Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665530 | XP_013454668.1 | 96.255 | 267 | 10 | 0 | 1 | 267 | 1 | 267 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665530 | sp|Q9FV53|DEF1A_ARATH | 71.905 | 210 | 56 | 1 | 58 | 267 | 63 | 269 | 2.95e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665530 | A0A072UG23 | 96.255 | 267 | 10 | 0 | 1 | 267 | 1 | 267 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023480 | Msa0665530 | -0.822011 | 2.975286e-53 | -8.615850e-47 |
| Msa0030700 | Msa0665530 | -0.804926 | 1.708132e-49 | -8.615850e-47 |
| Msa0046110 | Msa0665530 | 0.845305 | 4.413033e-59 | -8.615850e-47 |
| Msa0078120 | Msa0665530 | -0.811346 | 7.330659e-51 | -8.615850e-47 |
| Msa0089730 | Msa0665530 | -0.802396 | 5.722331e-49 | -8.615850e-47 |
| Msa0090510 | Msa0665530 | -0.821182 | 4.624892e-53 | -8.615850e-47 |
| Msa0092480 | Msa0665530 | 0.801661 | 8.105391e-49 | -8.615850e-47 |
| Msa0104670 | Msa0665530 | -0.816918 | 4.315374e-52 | -8.615850e-47 |
| Msa0611540 | Msa0665530 | 0.841722 | 4.000524e-58 | -8.615850e-47 |
| Msa0646410 | Msa0665530 | 0.812482 | 4.146738e-51 | -8.615850e-47 |
| Msa0651560 | Msa0665530 | -0.826243 | 3.019241e-54 | -8.615850e-47 |
| Msa0665530 | Msa0743930 | -0.818472 | 1.925946e-52 | -8.615850e-47 |
| Msa0665530 | Msa0772280 | -0.830118 | 3.515390e-55 | -8.615850e-47 |
| Msa0665530 | Msa0775170 | 0.837834 | 4.114681e-57 | -8.615850e-47 |
| Msa0665530 | Msa0810440 | -0.815432 | 9.271399e-52 | -8.615850e-47 |
| Msa0665530 | Msa0816130 | -0.817575 | 3.070997e-52 | -8.615850e-47 |
| Msa0665530 | Msa0823540 | -0.807022 | 6.191870e-50 | -8.615850e-47 |
| Msa0665530 | Msa0846860 | -0.822177 | 2.723553e-53 | -8.615850e-47 |
| Msa0665530 | Msa0910620 | -0.806392 | 8.411097e-50 | -8.615850e-47 |
| Msa0665530 | Msa0934140 | -0.814438 | 1.540653e-51 | -8.615850e-47 |
| Msa0665530 | Msa0985180 | -0.800555 | 1.364272e-48 | -8.615850e-47 |
| Msa0665530 | Msa0992510 | -0.811090 | 8.329116e-51 | -8.615850e-47 |
| Msa0665530 | Msa1002960 | -0.821599 | 3.705844e-53 | -8.615850e-47 |
| Msa0665530 | Msa1087520 | 0.852319 | 4.992297e-61 | -8.615850e-47 |
| Msa0665530 | Msa1089450 | -0.814816 | 1.270765e-51 | -8.615850e-47 |
| Msa0665530 | Msa1128270 | -0.816830 | 4.518125e-52 | -8.615850e-47 |
| Msa0665530 | Msa1128280 | -0.806633 | 7.482105e-50 | -8.615850e-47 |
| Msa0665530 | Msa1190100 | 0.834851 | 2.359552e-56 | -8.615850e-47 |
| Msa0665530 | Msa1196610 | 0.802506 | 5.432423e-49 | -8.615850e-47 |
| Msa0665530 | Msa1208450 | 0.810429 | 1.157787e-50 | -8.615850e-47 |
| Msa0665530 | Msa1225860 | 0.820202 | 7.767231e-53 | -8.615850e-47 |
| Msa0665530 | Msa1228040 | -0.801507 | 8.715258e-49 | -8.615850e-47 |
| Msa0665530 | Msa1236110 | 0.811592 | 6.483252e-51 | -8.615850e-47 |
| Msa0665530 | Msa1258030 | 0.833336 | 5.654407e-56 | -8.615850e-47 |
| Msa0665530 | Msa1307180 | -0.820973 | 5.167255e-53 | -8.615850e-47 |
| Msa0665530 | Msa1308220 | -0.842651 | 2.270254e-58 | -8.615850e-47 |
| Msa0665530 | Msa1316360 | -0.804618 | 1.981360e-49 | -8.615850e-47 |
| Msa0665530 | Msa1340200 | -0.824249 | 8.942591e-54 | -8.615850e-47 |
| Msa0665530 | Msa1363820 | 0.832054 | 1.176536e-55 | -8.615850e-47 |
| Msa0665530 | Msa1364350 | 0.824754 | 6.799990e-54 | -8.615850e-47 |
| Msa0665530 | Msa1369920 | 0.833580 | 4.914021e-56 | -8.615850e-47 |
| Msa0665530 | Msa1407190 | -0.801094 | 1.058759e-48 | -8.615850e-47 |
| Msa0665530 | Msa1432130 | -0.801389 | 9.215878e-49 | -8.615850e-47 |
| Msa0665530 | Msa1442920 | -0.805372 | 1.377860e-49 | -8.615850e-47 |
| Msa0665530 | Msa1452710 | -0.828066 | 1.104911e-54 | -8.615850e-47 |
| Msa0665530 | Msa1464090 | -0.802298 | 5.996284e-49 | -8.615850e-47 |
| Msa0120880 | Msa0665530 | -0.813149 | 2.962183e-51 | -8.615850e-47 |
| Msa0139550 | Msa0665530 | 0.801663 | 8.095753e-49 | -8.615850e-47 |
| Msa0144530 | Msa0665530 | -0.802308 | 5.967393e-49 | -8.615850e-47 |
| Msa0150860 | Msa0665530 | -0.808915 | 2.449106e-50 | -8.615850e-47 |
| Msa0160960 | Msa0665530 | -0.811202 | 7.875310e-51 | -8.615850e-47 |
| Msa0173800 | Msa0665530 | -0.809094 | 2.242371e-50 | -8.615850e-47 |
| Msa0183910 | Msa0665530 | -0.816291 | 5.966367e-52 | -8.615850e-47 |
| Msa0194920 | Msa0665530 | -0.800726 | 1.258832e-48 | -8.615850e-47 |
| Msa0204960 | Msa0665530 | -0.802532 | 5.364649e-49 | -8.615850e-47 |
| Msa0217670 | Msa0665530 | -0.804977 | 1.667206e-49 | -8.615850e-47 |
| Msa0220400 | Msa0665530 | 0.826117 | 3.234889e-54 | -8.615850e-47 |
| Msa0237300 | Msa0665530 | -0.820923 | 5.307071e-53 | -8.615850e-47 |
| Msa0382370 | Msa0665530 | -0.812763 | 3.599759e-51 | -8.615850e-47 |
| Msa0385500 | Msa0665530 | -0.813481 | 2.504812e-51 | -8.615850e-47 |
| Msa0403470 | Msa0665530 | 0.828255 | 9.949670e-55 | -8.615850e-47 |
| Msa0432160 | Msa0665530 | -0.805309 | 1.420366e-49 | -8.615850e-47 |
| Msa0440510 | Msa0665530 | -0.801060 | 1.075973e-48 | -8.615850e-47 |
| Msa0450400 | Msa0665530 | 0.815842 | 7.513568e-52 | -8.615850e-47 |
| Msa0476680 | Msa0665530 | -0.812716 | 3.685306e-51 | -8.615850e-47 |
| Msa0240900 | Msa0665530 | -0.814728 | 1.329231e-51 | -8.615850e-47 |
| Msa0249310 | Msa0665530 | -0.804191 | 2.431871e-49 | -8.615850e-47 |
| Msa0257490 | Msa0665530 | -0.810903 | 9.146381e-51 | -8.615850e-47 |
| Msa0274720 | Msa0665530 | -0.825415 | 4.745752e-54 | -8.615850e-47 |
| Msa0288010 | Msa0665530 | 0.847422 | 1.168297e-59 | -8.615850e-47 |
| Msa0296790 | Msa0665530 | -0.810957 | 8.902718e-51 | -8.615850e-47 |
| Msa0304730 | Msa0665530 | -0.801967 | 7.014220e-49 | -8.615850e-47 |
| Msa0315520 | Msa0665530 | -0.816118 | 6.520456e-52 | -8.615850e-47 |
| Msa0317970 | Msa0665530 | -0.809531 | 1.807088e-50 | -8.615850e-47 |
| Msa0321690 | Msa0665530 | -0.800010 | 1.761554e-48 | -8.615850e-47 |
| Msa0339910 | Msa0665530 | -0.814673 | 1.366456e-51 | -8.615850e-47 |
| Msa0500610 | Msa0665530 | 0.807580 | 4.715404e-50 | -8.615850e-47 |
| Msa0519160 | Msa0665530 | -0.803711 | 3.059814e-49 | -8.615850e-47 |
| Msa0521010 | Msa0665530 | -0.811982 | 5.331123e-51 | -8.615850e-47 |
| Msa0523430 | Msa0665530 | 0.801453 | 8.940840e-49 | -8.615850e-47 |
| Msa0527540 | Msa0665530 | -0.830514 | 2.814271e-55 | -8.615850e-47 |
| Msa0536350 | Msa0665530 | -0.816560 | 5.194119e-52 | -8.615850e-47 |
| Msa0542560 | Msa0665530 | -0.801930 | 7.135790e-49 | -8.615850e-47 |
| Msa0556230 | Msa0665530 | 0.820864 | 5.476138e-53 | -8.615850e-47 |
| Msa0559450 | Msa0665530 | 0.818313 | 2.091908e-52 | -8.615850e-47 |
| Msa0572550 | Msa0665530 | 0.822253 | 2.615285e-53 | -8.615850e-47 |
| Msa0576120 | Msa0665530 | 0.807210 | 5.649892e-50 | -8.615850e-47 |
| Msa0583360 | Msa0665530 | 0.820259 | 7.538413e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665530 | MtrunA17_Chr4g0003601 | 96.255 | 267 | 10 | 0 | 1 | 267 | 1 | 267 | 0.0 | 530 |
| Msa0665530 | MtrunA17_Chr2g0332821 | 71.308 | 237 | 50 | 2 | 31 | 267 | 38 | 256 | 9.16e-115 | 330 |
| Msa0665530 | MtrunA17_Chr2g0332811 | 70.899 | 189 | 55 | 0 | 72 | 260 | 72 | 260 | 4.11e-93 | 276 |
| Msa0665530 | MtrunA17_Chr7g0228371 | 29.907 | 214 | 119 | 5 | 42 | 250 | 28 | 215 | 1.88e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665530 | AT1G15390.1 | 71.905 | 210 | 56 | 1 | 58 | 267 | 63 | 269 | 3.00e-111 | 322 |
| Msa0665530 | AT5G14660.1 | 32.093 | 215 | 122 | 5 | 43 | 250 | 38 | 235 | 1.25e-23 | 97.1 |
| Msa0665530 | AT5G14660.3 | 32.093 | 215 | 122 | 5 | 43 | 250 | 38 | 235 | 1.25e-23 | 97.1 |
| Msa0665530 | AT5G14660.2 | 32.093 | 215 | 122 | 5 | 43 | 250 | 38 | 235 | 1.25e-23 | 97.1 |
Find 91 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGATAAGGGTGGGTTTA+TGG | 0.136478 | 4_4:-5115448 | None:intergenic |
| TTGTTCTGTTTATTCTTCTA+TGG | 0.194919 | 4_4:-5115424 | None:intergenic |
| TACTCTTCAGCTTGGGATTC+AGG | 0.215687 | 4_4:-5118007 | None:intergenic |
| CTCAGATTGGAGTTTCTTCT+AGG | 0.243478 | 4_4:+5115879 | Msa0665530:CDS |
| GCCCTCGGTAACGCAGGTTT+CGG | 0.251098 | 4_4:+5118719 | Msa0665530:exon |
| GAAAATGGTGATAGAGATAA+TGG | 0.253015 | 4_4:-5115584 | None:intergenic |
| GGCATAACTAATAAATTCTT+TGG | 0.259044 | 4_4:-5117824 | None:intergenic |
| GAGCTTTGAGCACTTCCTTT+GGG | 0.263811 | 4_4:-5117846 | None:intergenic |
| CACTATGCAGATAATTGTTT+TGG | 0.265370 | 4_4:+5117795 | Msa0665530:intron |
| GATGATAAGGTTAAAGTTAA+TGG | 0.268448 | 4_4:-5115617 | None:intergenic |
| GAAACGGCTTATCATGAAAA+AGG | 0.277851 | 4_4:-5118925 | None:intergenic |
| GTTACCGAGGGCCAAGTTTC+GGG | 0.283063 | 4_4:-5118708 | None:intergenic |
| CCCTCGGTAACGCAGGTTTC+GGG | 0.283162 | 4_4:+5118720 | Msa0665530:exon |
| CACGATAAGGGTGGGTTTAT+GGG | 0.287396 | 4_4:-5115447 | None:intergenic |
| TCTATGGTTCTGAAAGTTCT+AGG | 0.293273 | 4_4:-5118655 | None:intergenic |
| TACCTTGACGTTGAAGTTAC+AGG | 0.294274 | 4_4:+5118520 | Msa0665530:CDS |
| TTCAGTGTTAAATATTATAC+TGG | 0.295687 | 4_4:+5118956 | Msa0665530:three_prime_UTR |
| CGTTACCGAGGGCCAAGTTT+CGG | 0.309235 | 4_4:-5118709 | None:intergenic |
| AAATTATTGATGATATGATT+AGG | 0.316488 | 4_4:+5115819 | Msa0665530:CDS |
| TGAGCTTTGAGCACTTCCTT+TGG | 0.336549 | 4_4:-5117847 | None:intergenic |
| CACATTCATGTTGTAAAATC+CGG | 0.342414 | 4_4:-5118594 | None:intergenic |
| CCAATCAAAATAACTGCTTC+TGG | 0.342745 | 4_4:+5118562 | Msa0665530:CDS |
| TCACCAGCTTTAACAGTATC+AGG | 0.343078 | 4_4:-5115731 | None:intergenic |
| AATTATTGATGATATGATTA+GGG | 0.344880 | 4_4:+5115820 | Msa0665530:CDS |
| TATAATGCAATGACAAAATT+CGG | 0.364017 | 4_4:-5118898 | None:intergenic |
| ATTCTTCTATGGAACACAAT+AGG | 0.366896 | 4_4:-5115413 | None:intergenic |
| CTGCTTCTGGTTGGCAGGCC+CGG | 0.375678 | 4_4:+5118575 | Msa0665530:CDS |
| GGTTTAGCTGCTCCTCAGAT+TGG | 0.386408 | 4_4:+5115866 | Msa0665530:CDS |
| TTGAGAAGATGAAGATGATA+AGG | 0.388406 | 4_4:-5115630 | None:intergenic |
| TGAGCAGGTTCATGAAGAAC+AGG | 0.402971 | 4_4:-5115755 | None:intergenic |
| TCTGTAAGAAAATCACGATA+AGG | 0.419805 | 4_4:-5115460 | None:intergenic |
| AAAATGGTGATAGAGATAAT+GGG | 0.423760 | 4_4:-5115583 | None:intergenic |
| ATGATATGATTAGGGTTATG+AGG | 0.426883 | 4_4:+5115828 | Msa0665530:CDS |
| CGTTGCTGCTGCCTCTGATA+AGG | 0.427764 | 4_4:+5118744 | Msa0665530:three_prime_UTR |
| GCTCAGGGATGCCCGAAACT+TGG | 0.436382 | 4_4:+5118697 | Msa0665530:CDS |
| TTGCTCGTACTCTTCAGCTT+GGG | 0.439554 | 4_4:-5118014 | None:intergenic |
| CATGGACCTTCCTCTTGCTC+AGG | 0.439770 | 4_4:+5118681 | Msa0665530:CDS |
| ACACTGAAACTTAAATGAAA+CGG | 0.445404 | 4_4:-5118941 | None:intergenic |
| TTTGCTCGTACTCTTCAGCT+TGG | 0.449767 | 4_4:-5118015 | None:intergenic |
| GCACAAGAAACCTGTGTTGA+CGG | 0.461138 | 4_4:-5118767 | None:intergenic |
| AATAACTGCTTCTGGTTGGC+AGG | 0.461517 | 4_4:+5118570 | Msa0665530:CDS |
| GAACATACCAAAAGATCAAA+AGG | 0.463797 | 4_4:-5117880 | None:intergenic |
| TCAGATTGGAGTTTCTTCTA+GGG | 0.471837 | 4_4:+5115880 | Msa0665530:CDS |
| CTATGGAAGCTTTACACTTA+CGG | 0.473557 | 4_4:+5115504 | Msa0665530:CDS |
| AACTCTATATGTTGATAAGA+TGG | 0.483415 | 4_4:+5118630 | Msa0665530:CDS |
| CTTGCGTTAAAGCTGAGAAA+TGG | 0.484360 | 4_4:-5119022 | None:intergenic |
| ATGAGGAAAGCTCCTGGTGT+TGG | 0.494343 | 4_4:+5115845 | Msa0665530:CDS |
| AAGGTTAAAGTTAATGGTGG+GGG | 0.496150 | 4_4:-5115611 | None:intergenic |
| AGCTGAAGAGTACGAGCAAA+AGG | 0.511255 | 4_4:+5118018 | Msa0665530:CDS |
| CTGTAAGAAAATCACGATAA+GGG | 0.516073 | 4_4:-5115459 | None:intergenic |
| TTGCCTGATACTGTTAAAGC+TGG | 0.517276 | 4_4:+5115728 | Msa0665530:CDS |
| TATTCAGAAAATGAAGGCTA+TGG | 0.517748 | 4_4:+5115487 | Msa0665530:exon |
| TCTTCATGAACCTGCTCAAG+AGG | 0.520105 | 4_4:+5115760 | Msa0665530:CDS |
| AATTCGGCATAGAAAATTGA+GGG | 0.527496 | 4_4:-5118882 | None:intergenic |
| ATAAGGTTAAAGTTAATGGT+GGG | 0.530548 | 4_4:-5115613 | None:intergenic |
| CTAGGATCAACCTCTTGAGC+AGG | 0.531181 | 4_4:-5115770 | None:intergenic |
| GATAAGGTTAAAGTTAATGG+TGG | 0.535661 | 4_4:-5115614 | None:intergenic |
| ACAACATGAATGTGATCACT+TGG | 0.545261 | 4_4:+5118603 | Msa0665530:CDS |
| CATGAATGTGATCACTTGGA+TGG | 0.545479 | 4_4:+5118607 | Msa0665530:CDS |
| AGCTTTGAGCACTTCCTTTG+GGG | 0.546333 | 4_4:-5117845 | None:intergenic |
| ACATTCATGTTGTAAAATCC+GGG | 0.546437 | 4_4:-5118593 | None:intergenic |
| GAGAGATATTCAGAAAATGA+AGG | 0.546950 | 4_4:+5115481 | Msa0665530:exon |
| AACTTGGCCCTCGGTAACGC+AGG | 0.553944 | 4_4:+5118713 | Msa0665530:exon |
| TCTGATAAGGCCGTCAACAC+AGG | 0.553984 | 4_4:+5118757 | Msa0665530:three_prime_UTR |
| TCAAAATAACTGCTTCTGGT+TGG | 0.559785 | 4_4:+5118566 | Msa0665530:CDS |
| AAATTCGGCATAGAAAATTG+AGG | 0.572113 | 4_4:-5118883 | None:intergenic |
| TAAGGTTAAAGTTAATGGTG+GGG | 0.574273 | 4_4:-5115612 | None:intergenic |
| ATGGACCTTCCTCTTGCTCA+GGG | 0.583904 | 4_4:+5118682 | Msa0665530:CDS |
| AAAATTGAGGGAGATTTCAT+CGG | 0.585633 | 4_4:-5118870 | None:intergenic |
| AAGAAAATCACGATAAGGGT+GGG | 0.586340 | 4_4:-5115455 | None:intergenic |
| TTCGGGCATCCCTGAGCAAG+AGG | 0.590647 | 4_4:-5118691 | None:intergenic |
| TTATCAGACATTATCTCACT+AGG | 0.592235 | 4_4:-5115788 | None:intergenic |
| GGCATCCCTGAGCAAGAGGA+AGG | 0.592254 | 4_4:-5118687 | None:intergenic |
| TGATGGATTTAGAGCTGTGG+TGG | 0.598884 | 4_4:+5118492 | Msa0665530:CDS |
| AGGGTTATGAGGAAAGCTCC+TGG | 0.599633 | 4_4:+5115839 | Msa0665530:CDS |
| ATTTATTAGTTATGCCCCAA+AGG | 0.600743 | 4_4:+5117831 | Msa0665530:CDS |
| TAAGAAAATCACGATAAGGG+TGG | 0.602629 | 4_4:-5115456 | None:intergenic |
| GATGCCCGAAACTTGGCCCT+CGG | 0.604972 | 4_4:+5118704 | Msa0665530:CDS |
| CCCGAAACCTGCGTTACCGA+GGG | 0.605439 | 4_4:-5118720 | None:intergenic |
| AACCTGTAACTTCAACGTCA+AGG | 0.605691 | 4_4:-5118522 | None:intergenic |
| TCCCGAAACCTGCGTTACCG+AGG | 0.608309 | 4_4:-5118721 | None:intergenic |
| TTTCAGAACCATAGAAAACA+TGG | 0.609699 | 4_4:+5118663 | Msa0665530:CDS |
| AAACTGCTACTGTAAGAACA+AGG | 0.615173 | 4_4:+5115651 | Msa0665530:CDS |
| GCTACTGTAAGAACAAGGGC+AGG | 0.619022 | 4_4:+5115656 | Msa0665530:CDS |
| TGTTGATGGATTTAGAGCTG+TGG | 0.633917 | 4_4:+5118489 | Msa0665530:CDS |
| TGTGTTGACGGCCTTATCAG+AGG | 0.635968 | 4_4:-5118755 | None:intergenic |
| CTAGAAGAAACTCCAATCTG+AGG | 0.652902 | 4_4:-5115878 | None:intergenic |
| AAATGGTGATAGAGATAATG+GGG | 0.673193 | 4_4:-5115582 | None:intergenic |
| AACTGCTACTGTAAGAACAA+GGG | 0.673682 | 4_4:+5115652 | Msa0665530:CDS |
| GGAGCAGCTAAACCAACACC+AGG | 0.676457 | 4_4:-5115857 | None:intergenic |
| GAGCAGGTTCATGAAGAACA+GGG | 0.696995 | 4_4:-5115754 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTTTATCTTAAATTAT+TGG | - | chr4_4:5116391-5116410 | None:intergenic | 10.0% |
| !!! | AAATTATTGATGATATGATT+AGG | + | chr4_4:5115819-5115838 | Msa0665530:CDS | 15.0% |
| !!! | AATTATTGATGATATGATTA+GGG | + | chr4_4:5115820-5115839 | Msa0665530:CDS | 15.0% |
| !!! | TAAATATGTTTTTATAAGTG+GGG | - | chr4_4:5116034-5116053 | None:intergenic | 15.0% |
| !!! | CTAAATATGTTTTTATAAGT+GGG | - | chr4_4:5116035-5116054 | None:intergenic | 15.0% |
| !!! | TCTAAATATGTTTTTATAAG+TGG | - | chr4_4:5116036-5116055 | None:intergenic | 15.0% |
| !!! | TTTGAAATTTAGTTAATTTC+AGG | + | chr4_4:5117441-5117460 | Msa0665530:intron | 15.0% |
| !! | TCAAATTACTTTCAATTTAT+AGG | - | chr4_4:5117755-5117774 | None:intergenic | 15.0% |
| !! | CTTTAATACATATAATTCAT+TGG | + | chr4_4:5117965-5117984 | Msa0665530:intron | 15.0% |
| !! | AAATTTCTTAGATTAAAAGA+GGG | - | chr4_4:5118197-5118216 | None:intergenic | 15.0% |
| !!! | GAATTTTAACAAATTGTTAT+TGG | + | chr4_4:5118289-5118308 | Msa0665530:intron | 15.0% |
| !! | AATTTATTAAAGTTAGTACA+GGG | - | chr4_4:5118322-5118341 | None:intergenic | 15.0% |
| !! | ATTTCAAAAATATTTGAATC+TGG | - | chr4_4:5118835-5118854 | None:intergenic | 15.0% |
| !!! | AAATATGTTTTTATAAGTGG+GGG | - | chr4_4:5116033-5116052 | None:intergenic | 20.0% |
| !! | TAAAGTTAGTTAACAAAGTT+CGG | + | chr4_4:5116149-5116168 | Msa0665530:intron | 20.0% |
| !!! | TTTTTTCTCTATCACTAAAA+TGG | - | chr4_4:5116216-5116235 | None:intergenic | 20.0% |
| !! | ATATGACTGATACATATAAA+AGG | - | chr4_4:5116549-5116568 | None:intergenic | 20.0% |
| !!! | AGATGAAGAGAAATTTTTAT+TGG | + | chr4_4:5116867-5116886 | Msa0665530:intron | 20.0% |
| !!! | CACTTAATTTATTTTCGTAT+TGG | - | chr4_4:5116946-5116965 | None:intergenic | 20.0% |
| !!! | ATATTTACTTTTTGTCGTAA+AGG | + | chr4_4:5117935-5117954 | Msa0665530:intron | 20.0% |
| !! | CAAATTTCTTAGATTAAAAG+AGG | - | chr4_4:5118198-5118217 | None:intergenic | 20.0% |
| !!! | TTTAACAAATTGTTATTGGT+TGG | + | chr4_4:5118293-5118312 | Msa0665530:intron | 20.0% |
| !! | GAATTTATTAAAGTTAGTAC+AGG | - | chr4_4:5118323-5118342 | None:intergenic | 20.0% |
| !!! | ATAGTAGTTTTGATAATTTC+CGG | + | chr4_4:5118343-5118362 | Msa0665530:intron | 20.0% |
| !! | ATAACAATTGAACATGTTAA+TGG | - | chr4_4:5118455-5118474 | None:intergenic | 20.0% |
| !! | TATAATGCAATGACAAAATT+CGG | - | chr4_4:5118901-5118920 | None:intergenic | 20.0% |
| !!! | ATTTTGTCATTGCATTATAA+TGG | + | chr4_4:5118902-5118921 | Msa0665530:three_prime_UTR | 20.0% |
| !! | TTCAGTGTTAAATATTATAC+TGG | + | chr4_4:5118956-5118975 | Msa0665530:three_prime_UTR | 20.0% |
| !! | TTATACTGGAAAAATTTCTT+AGG | + | chr4_4:5118970-5118989 | Msa0665530:three_prime_UTR | 20.0% |
| ! | TTGTTCTGTTTATTCTTCTA+TGG | - | chr4_4:5115427-5115446 | None:intergenic | 25.0% |
| ! | AAAATGGTGATAGAGATAAT+GGG | - | chr4_4:5115586-5115605 | None:intergenic | 25.0% |
| ! | ATAAGGTTAAAGTTAATGGT+GGG | - | chr4_4:5115616-5115635 | None:intergenic | 25.0% |
| ! | GATGATAAGGTTAAAGTTAA+TGG | - | chr4_4:5115620-5115639 | None:intergenic | 25.0% |
| ! | TTAACTAATCCTTACAAAAC+CGG | + | chr4_4:5115995-5116014 | Msa0665530:intron | 25.0% |
| !! | TACTTTGTAATCTAAGACAT+AGG | - | chr4_4:5116184-5116203 | None:intergenic | 25.0% |
| ! | TTAGTGATAGAGAAAAAAGT+AGG | + | chr4_4:5116218-5116237 | Msa0665530:intron | 25.0% |
| ! | TAGTGATAGAGAAAAAAGTA+GGG | + | chr4_4:5116219-5116238 | Msa0665530:intron | 25.0% |
| ! | TATCATCATCATCATTATCA+TGG | + | chr4_4:5116681-5116700 | Msa0665530:intron | 25.0% |
| !!! | TTTTGAGTCAATCATCTATT+TGG | + | chr4_4:5116724-5116743 | Msa0665530:intron | 25.0% |
| !!! | TATTTGGTTTTGAAATTGCA+GGG | + | chr4_4:5116740-5116759 | Msa0665530:intron | 25.0% |
| ! | ATCAATAAGACTAGTATGAT+CGG | - | chr4_4:5116831-5116850 | None:intergenic | 25.0% |
| !!! | TCATACTAGTCTTATTGATA+CGG | + | chr4_4:5116832-5116851 | Msa0665530:intron | 25.0% |
| ! | AAATTTCTCTTCATCTTGAT+CGG | - | chr4_4:5116863-5116882 | None:intergenic | 25.0% |
| ! | TAGGACTAAATTGACTAAAT+TGG | + | chr4_4:5117498-5117517 | Msa0665530:intron | 25.0% |
| !!! | TGATTTGCTCAATATTTTGA+AGG | + | chr4_4:5117521-5117540 | Msa0665530:intron | 25.0% |
| !! | TTATTCCTTTATTTGAAGTG+TGG | - | chr4_4:5117591-5117610 | None:intergenic | 25.0% |
| ! | CTTCAAATAAAGGAATAAGA+AGG | + | chr4_4:5117593-5117612 | Msa0665530:intron | 25.0% |
| ! | TAAGAAGGAAAAGAAACAAA+AGG | + | chr4_4:5117608-5117627 | Msa0665530:intron | 25.0% |
| ! | AAGAAGGAAAAGAAACAAAA+GGG | + | chr4_4:5117609-5117628 | Msa0665530:intron | 25.0% |
| !! | AATCATGAAGTACTTTCAAA+TGG | - | chr4_4:5117646-5117665 | None:intergenic | 25.0% |
| ! | GAAAATTGAAAGTGAATTTG+TGG | + | chr4_4:5117692-5117711 | Msa0665530:intron | 25.0% |
| ! | GGCATAACTAATAAATTCTT+TGG | - | chr4_4:5117827-5117846 | None:intergenic | 25.0% |
| !!! | ATATCATGATTTGTCCTTTT+CGG | + | chr4_4:5118072-5118091 | Msa0665530:intron | 25.0% |
| ! | GAACAAGTAAATGAATAGTT+AGG | - | chr4_4:5118132-5118151 | None:intergenic | 25.0% |
| ! | AGCATAAGCATATTAATTTC+CGG | - | chr4_4:5118365-5118384 | None:intergenic | 25.0% |
| ! | TTAATATGCTTATGCTTAGA+TGG | + | chr4_4:5118369-5118388 | Msa0665530:intron | 25.0% |
| !! | AACTCTATATGTTGATAAGA+TGG | + | chr4_4:5118630-5118649 | Msa0665530:CDS | 25.0% |
| ! | ACACTGAAACTTAAATGAAA+CGG | - | chr4_4:5118944-5118963 | None:intergenic | 25.0% |
| ATTCTTCTATGGAACACAAT+AGG | - | chr4_4:5115416-5115435 | None:intergenic | 30.0% | |
| CTGTAAGAAAATCACGATAA+GGG | - | chr4_4:5115462-5115481 | None:intergenic | 30.0% | |
| TCTGTAAGAAAATCACGATA+AGG | - | chr4_4:5115463-5115482 | None:intergenic | 30.0% | |
| GAGAGATATTCAGAAAATGA+AGG | + | chr4_4:5115481-5115500 | Msa0665530:exon | 30.0% | |
| TATTCAGAAAATGAAGGCTA+TGG | + | chr4_4:5115487-5115506 | Msa0665530:exon | 30.0% | |
| !!! | AAAGAGAGAGTTTTTGGTTA+TGG | - | chr4_4:5115546-5115565 | None:intergenic | 30.0% |
| ! | AAGTGTAAAGAGAGAGTTTT+TGG | - | chr4_4:5115552-5115571 | None:intergenic | 30.0% |
| AAATGGTGATAGAGATAATG+GGG | - | chr4_4:5115585-5115604 | None:intergenic | 30.0% | |
| GAAAATGGTGATAGAGATAA+TGG | - | chr4_4:5115587-5115606 | None:intergenic | 30.0% | |
| TAAGGTTAAAGTTAATGGTG+GGG | - | chr4_4:5115615-5115634 | None:intergenic | 30.0% | |
| GATAAGGTTAAAGTTAATGG+TGG | - | chr4_4:5115617-5115636 | None:intergenic | 30.0% | |
| TTGAGAAGATGAAGATGATA+AGG | - | chr4_4:5115633-5115652 | None:intergenic | 30.0% | |
| TTATCAGACATTATCTCACT+AGG | - | chr4_4:5115791-5115810 | None:intergenic | 30.0% | |
| ATGATATGATTAGGGTTATG+AGG | + | chr4_4:5115828-5115847 | Msa0665530:CDS | 30.0% | |
| !!! | CTATTTGGTTTTGAAATTGC+AGG | + | chr4_4:5116739-5116758 | Msa0665530:intron | 30.0% |
| TCAATAAGACTAGTATGATC+GGG | - | chr4_4:5116830-5116849 | None:intergenic | 30.0% | |
| ! | TCTACCATCTTTTCAACAAT+AGG | - | chr4_4:5117060-5117079 | None:intergenic | 30.0% |
| ! | AACTTGTGGATTATGTAGTT+AGG | + | chr4_4:5117115-5117134 | Msa0665530:intron | 30.0% |
| ! | TAATGAGTTGGATGGAAATA+TGG | + | chr4_4:5117230-5117249 | Msa0665530:intron | 30.0% |
| ! | GATGGAAATATGGTTTTTGA+TGG | + | chr4_4:5117240-5117259 | Msa0665530:intron | 30.0% |
| !!! | TGTTGTTGTACTAGTCTTTT+TGG | + | chr4_4:5117325-5117344 | Msa0665530:intron | 30.0% |
| !!! | TTGTACTAGTCTTTTTGGAT+AGG | + | chr4_4:5117330-5117349 | Msa0665530:intron | 30.0% |
| TTCAGAGACGAGATAATTTA+CGG | - | chr4_4:5117370-5117389 | None:intergenic | 30.0% | |
| ! | TGAGAATGCTCTACAATTTT+AGG | + | chr4_4:5117479-5117498 | Msa0665530:intron | 30.0% |
| !! | TCAATATTTTGAAGGAGCTA+AGG | + | chr4_4:5117529-5117548 | Msa0665530:intron | 30.0% |
| TGTTACCACACTTCAAATAA+AGG | + | chr4_4:5117583-5117602 | Msa0665530:intron | 30.0% | |
| AGAAGGAAAAGAAACAAAAG+GGG | + | chr4_4:5117610-5117629 | Msa0665530:intron | 30.0% | |
| GCTTATGACAACTATAATGT+TGG | + | chr4_4:5117670-5117689 | Msa0665530:intron | 30.0% | |
| ! | CACTATGCAGATAATTGTTT+TGG | + | chr4_4:5117795-5117814 | Msa0665530:intron | 30.0% |
| ATTTATTAGTTATGCCCCAA+AGG | + | chr4_4:5117831-5117850 | Msa0665530:CDS | 30.0% | |
| ! | TAGACATCCTTTTGATCTTT+TGG | + | chr4_4:5117873-5117892 | Msa0665530:CDS | 30.0% |
| GAACATACCAAAAGATCAAA+AGG | - | chr4_4:5117883-5117902 | None:intergenic | 30.0% | |
| TATGTTCTTATGCTGAGAAA+AGG | + | chr4_4:5117896-5117915 | Msa0665530:intron | 30.0% | |
| !! | TACTTTTTGTCGTAAAGGTT+CGG | + | chr4_4:5117940-5117959 | Msa0665530:intron | 30.0% |
| TTACTTGTGTTGTCTAATAG+CGG | + | chr4_4:5118239-5118258 | Msa0665530:intron | 30.0% | |
| !! | ATAACATTTTGCAGTGTTGA+TGG | + | chr4_4:5118475-5118494 | Msa0665530:intron | 30.0% |
| ACATTCATGTTGTAAAATCC+GGG | - | chr4_4:5118596-5118615 | None:intergenic | 30.0% | |
| CACATTCATGTTGTAAAATC+CGG | - | chr4_4:5118597-5118616 | None:intergenic | 30.0% | |
| TTTCAGAACCATAGAAAACA+TGG | + | chr4_4:5118663-5118682 | Msa0665530:CDS | 30.0% | |
| ! | TTGAATCTGGTCTCAATTTT+AGG | - | chr4_4:5118822-5118841 | None:intergenic | 30.0% |
| AAAATTGAGGGAGATTTCAT+CGG | - | chr4_4:5118873-5118892 | None:intergenic | 30.0% | |
| AATTCGGCATAGAAAATTGA+GGG | - | chr4_4:5118885-5118904 | None:intergenic | 30.0% | |
| AAATTCGGCATAGAAAATTG+AGG | - | chr4_4:5118886-5118905 | None:intergenic | 30.0% | |
| AAAAATTTCTTAGGTCTGCA+AGG | + | chr4_4:5118979-5118998 | Msa0665530:three_prime_UTR | 30.0% | |
| AAGAAAATCACGATAAGGGT+GGG | - | chr4_4:5115458-5115477 | None:intergenic | 35.0% | |
| TAAGAAAATCACGATAAGGG+TGG | - | chr4_4:5115459-5115478 | None:intergenic | 35.0% | |
| CTATGGAAGCTTTACACTTA+CGG | + | chr4_4:5115504-5115523 | Msa0665530:CDS | 35.0% | |
| !!! | GAGTTTTTGGTTATGGATAG+TGG | - | chr4_4:5115539-5115558 | None:intergenic | 35.0% |
| AAGGTTAAAGTTAATGGTGG+GGG | - | chr4_4:5115614-5115633 | None:intergenic | 35.0% | |
| AAACTGCTACTGTAAGAACA+AGG | + | chr4_4:5115651-5115670 | Msa0665530:CDS | 35.0% | |
| AACTGCTACTGTAAGAACAA+GGG | + | chr4_4:5115652-5115671 | Msa0665530:CDS | 35.0% | |
| !!! | ACAAGGGCAGGTTTTTTTTT+TGG | + | chr4_4:5115668-5115687 | Msa0665530:CDS | 35.0% |
| TCAGATTGGAGTTTCTTCTA+GGG | + | chr4_4:5115880-5115899 | Msa0665530:CDS | 35.0% | |
| TTAGTCTCATGTCAGAAAAC+TGG | - | chr4_4:5116059-5116078 | None:intergenic | 35.0% | |
| ! | ATCTAAGACATAGGCGAAAT+TGG | - | chr4_4:5116175-5116194 | None:intergenic | 35.0% |
| TAAGTTACAACTCGATGTCT+TGG | + | chr4_4:5116264-5116283 | Msa0665530:intron | 35.0% | |
| ! | ATAGACACTAGACATGGTTT+TGG | + | chr4_4:5116346-5116365 | Msa0665530:intron | 35.0% |
| TGATTAAACGTAACCGTATG+AGG | + | chr4_4:5116407-5116426 | Msa0665530:intron | 35.0% | |
| GATTAAACGTAACCGTATGA+GGG | + | chr4_4:5116408-5116427 | Msa0665530:intron | 35.0% | |
| ATTAAACGTAACCGTATGAG+GGG | + | chr4_4:5116409-5116428 | Msa0665530:intron | 35.0% | |
| TGTTGTCATGTGACTGAAAA+CGG | + | chr4_4:5116456-5116475 | Msa0665530:intron | 35.0% | |
| GATACATATAAAAGGCAAGC+TGG | - | chr4_4:5116541-5116560 | None:intergenic | 35.0% | |
| GTATCAGTCATATGTATCAG+TGG | + | chr4_4:5116556-5116575 | Msa0665530:intron | 35.0% | |
| CATATGTATCAGTGGTATGT+CGG | + | chr4_4:5116564-5116583 | Msa0665530:intron | 35.0% | |
| !! | TAACTGTGTGTGTGTTTTTG+TGG | + | chr4_4:5116618-5116637 | Msa0665530:intron | 35.0% |
| TGTTGTAAGTGACAGAATGT+TGG | + | chr4_4:5116909-5116928 | Msa0665530:intron | 35.0% | |
| GTTGTAAGTGACAGAATGTT+GGG | + | chr4_4:5116910-5116929 | Msa0665530:intron | 35.0% | |
| ACAACATTAGAGAGAGAGTT+GGG | + | chr4_4:5117028-5117047 | Msa0665530:intron | 35.0% | |
| AGCACCTATTGTTGAAAAGA+TGG | + | chr4_4:5117053-5117072 | Msa0665530:intron | 35.0% | |
| AGATGGTAGAAACTAGACTT+AGG | + | chr4_4:5117070-5117089 | Msa0665530:intron | 35.0% | |
| AAACTAGACTTAGGTGGTTT+AGG | + | chr4_4:5117079-5117098 | Msa0665530:intron | 35.0% | |
| ! | AGTTAGGAGAGTATATCAGA+TGG | + | chr4_4:5117131-5117150 | Msa0665530:intron | 35.0% |
| ATCTCTAGATCCTTCTTGAT+AGG | - | chr4_4:5117210-5117229 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGT+TGG | + | chr4_4:5117218-5117237 | Msa0665530:intron | 35.0% | |
| ! | CTAGAGATTAATGAGTTGGA+TGG | + | chr4_4:5117222-5117241 | Msa0665530:intron | 35.0% |
| TAGTACAACAACAACAACCA+AGG | - | chr4_4:5117318-5117337 | None:intergenic | 35.0% | |
| TCAGAGACGAGATAATTTAC+GGG | - | chr4_4:5117369-5117388 | None:intergenic | 35.0% | |
| CAAACACCCTTCAAAAAACA+GGG | - | chr4_4:5118048-5118067 | None:intergenic | 35.0% | |
| TCAAACACCCTTCAAAAAAC+AGG | - | chr4_4:5118049-5118068 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGAAGGGTGTTTG+AGG | + | chr4_4:5118048-5118067 | Msa0665530:CDS | 35.0% |
| ACAAAGATGGAAAACCGAAA+AGG | - | chr4_4:5118089-5118108 | None:intergenic | 35.0% | |
| AGTGTGGTAAGAAACAAAGA+TGG | - | chr4_4:5118102-5118121 | None:intergenic | 35.0% | |
| ATAGTTAGGCAAATCAAGTG+TGG | - | chr4_4:5118118-5118137 | None:intergenic | 35.0% | |
| !!! | CCAGAAGCAGTTATTTTGAT+TGG | - | chr4_4:5118565-5118584 | None:intergenic | 35.0% |
| CCAATCAAAATAACTGCTTC+TGG | + | chr4_4:5118562-5118581 | Msa0665530:CDS | 35.0% | |
| TCAAAATAACTGCTTCTGGT+TGG | + | chr4_4:5118566-5118585 | Msa0665530:CDS | 35.0% | |
| ACAACATGAATGTGATCACT+TGG | + | chr4_4:5118603-5118622 | Msa0665530:CDS | 35.0% | |
| !! | TCTATGGTTCTGAAAGTTCT+AGG | - | chr4_4:5118658-5118677 | None:intergenic | 35.0% |
| GAAACGGCTTATCATGAAAA+AGG | - | chr4_4:5118928-5118947 | None:intergenic | 35.0% | |
| !!! | AATGGTGGGGGTTTTGAAAA+TGG | - | chr4_4:5115602-5115621 | None:intergenic | 40.0% |
| TTGCCTGATACTGTTAAAGC+TGG | + | chr4_4:5115728-5115747 | Msa0665530:CDS | 40.0% | |
| ! | TCACCAGCTTTAACAGTATC+AGG | - | chr4_4:5115734-5115753 | None:intergenic | 40.0% |
| CTAGAAGAAACTCCAATCTG+AGG | - | chr4_4:5115881-5115900 | None:intergenic | 40.0% | |
| CTCAGATTGGAGTTTCTTCT+AGG | + | chr4_4:5115879-5115898 | Msa0665530:CDS | 40.0% | |
| GGGTTTACAGTGTTACAACT+TGG | + | chr4_4:5116239-5116258 | Msa0665530:intron | 40.0% | |
| !! | GCTCATTGGTATTGACAAGT+GGG | - | chr4_4:5116290-5116309 | None:intergenic | 40.0% |
| GACAAACACGATGTTGTGTA+TGG | - | chr4_4:5116312-5116331 | None:intergenic | 40.0% | |
| ACCATGTCTAGTGTCTATGT+CGG | - | chr4_4:5116344-5116363 | None:intergenic | 40.0% | |
| GTTGTCATGTGACTGAAAAC+GGG | + | chr4_4:5116457-5116476 | Msa0665530:intron | 40.0% | |
| AGCCTCTTGCGTAAAAAACA+GGG | + | chr4_4:5116496-5116515 | Msa0665530:intron | 40.0% | |
| !!! | TACCCTGTTTTTTACGCAAG+AGG | - | chr4_4:5116501-5116520 | None:intergenic | 40.0% |
| CTTGCGTAAAAAACAGGGTA+AGG | + | chr4_4:5116501-5116520 | Msa0665530:intron | 40.0% | |
| TTATTGGACAGCTGTAAGAC+CGG | + | chr4_4:5116883-5116902 | Msa0665530:intron | 40.0% | |
| AATTAAGTGCGACAGAGATG+AGG | + | chr4_4:5116957-5116976 | Msa0665530:intron | 40.0% | |
| GACAACATTAGAGAGAGAGT+TGG | + | chr4_4:5117027-5117046 | Msa0665530:intron | 40.0% | |
| CAACATTAGAGAGAGAGTTG+GGG | + | chr4_4:5117029-5117048 | Msa0665530:intron | 40.0% | |
| TGGTAGAAACTAGACTTAGG+TGG | + | chr4_4:5117073-5117092 | Msa0665530:intron | 40.0% | |
| GCATGTAGAGAGAAAACTTG+TGG | + | chr4_4:5117101-5117120 | Msa0665530:intron | 40.0% | |
| ! | TAGGAGAGTATATCAGATGG+AGG | + | chr4_4:5117134-5117153 | Msa0665530:intron | 40.0% |
| ! | AGGAGAGTATATCAGATGGA+GGG | + | chr4_4:5117135-5117154 | Msa0665530:intron | 40.0% |
| !!! | GGCTCTCTTATGCTTTTTCT+AGG | - | chr4_4:5117189-5117208 | None:intergenic | 40.0% |
| CATAAGAGAGCCTATCAAGA+AGG | + | chr4_4:5117197-5117216 | Msa0665530:intron | 40.0% | |
| AAGGCTTATCCCATTAAGTG+GGG | - | chr4_4:5117299-5117318 | None:intergenic | 40.0% | |
| CAAGGCTTATCCCATTAAGT+GGG | - | chr4_4:5117300-5117319 | None:intergenic | 40.0% | |
| !! | TTCATTGGTTCTCTTGTTGC+AGG | + | chr4_4:5117980-5117999 | Msa0665530:intron | 40.0% |
| !! | TGTTGATGGATTTAGAGCTG+TGG | + | chr4_4:5118489-5118508 | Msa0665530:CDS | 40.0% |
| TACCTTGACGTTGAAGTTAC+AGG | + | chr4_4:5118520-5118539 | Msa0665530:CDS | 40.0% | |
| AACCTGTAACTTCAACGTCA+AGG | - | chr4_4:5118525-5118544 | None:intergenic | 40.0% | |
| !! | GTTACAGGTTTTGATCGCAA+TGG | + | chr4_4:5118535-5118554 | Msa0665530:CDS | 40.0% |
| CATGAATGTGATCACTTGGA+TGG | + | chr4_4:5118607-5118626 | Msa0665530:CDS | 40.0% | |
| ! | AGGAAGGTCCATGTTTTCTA+TGG | - | chr4_4:5118674-5118693 | None:intergenic | 40.0% |
| CTTGCGTTAAAGCTGAGAAA+TGG | - | chr4_4:5119025-5119044 | None:intergenic | 40.0% | |
| ! | CACGATAAGGGTGGGTTTAT+GGG | - | chr4_4:5115450-5115469 | None:intergenic | 45.0% |
| ! | TCACGATAAGGGTGGGTTTA+TGG | - | chr4_4:5115451-5115470 | None:intergenic | 45.0% |
| GAGCAGGTTCATGAAGAACA+GGG | - | chr4_4:5115757-5115776 | None:intergenic | 45.0% | |
| TGAGCAGGTTCATGAAGAAC+AGG | - | chr4_4:5115758-5115777 | None:intergenic | 45.0% | |
| TCTTCATGAACCTGCTCAAG+AGG | + | chr4_4:5115760-5115779 | Msa0665530:CDS | 45.0% | |
| ! | TCCTTACAAAACCGGCTTTC+AGG | + | chr4_4:5116003-5116022 | Msa0665530:intron | 45.0% |
| !! | ACCTGAAAGCCGGTTTTGTA+AGG | - | chr4_4:5116007-5116026 | None:intergenic | 45.0% |
| !! | GGCTCATTGGTATTGACAAG+TGG | - | chr4_4:5116291-5116310 | None:intergenic | 45.0% |
| CGATGTTGTGTATGGCTCAT+TGG | - | chr4_4:5116304-5116323 | None:intergenic | 45.0% | |
| ACCGACATAGACACTAGACA+TGG | + | chr4_4:5116340-5116359 | Msa0665530:intron | 45.0% | |
| CAACTTTATCAGTTGCGCCA+AGG | - | chr4_4:5116438-5116457 | None:intergenic | 45.0% | |
| CAGCCTCTTGCGTAAAAAAC+AGG | + | chr4_4:5116495-5116514 | Msa0665530:intron | 45.0% | |
| ACACACAGTTAGTAGCACTG+CGG | - | chr4_4:5116609-5116628 | None:intergenic | 45.0% | |
| ! | TCTGTCACTTACAACATCGC+CGG | - | chr4_4:5116905-5116924 | None:intergenic | 45.0% |
| CAGAGATGAGGATGTTGTGT+TGG | + | chr4_4:5116969-5116988 | Msa0665530:intron | 45.0% | |
| AGGATGTTGTGTTGGATGTG+CGG | + | chr4_4:5116977-5116996 | Msa0665530:intron | 45.0% | |
| ! | GGAGAGTATATCAGATGGAG+GGG | + | chr4_4:5117136-5117155 | Msa0665530:intron | 45.0% |
| GAGGGGAGTTAAATCACTAG+AGG | + | chr4_4:5117153-5117172 | Msa0665530:intron | 45.0% | |
| ATGTAGCCAACCCCACTTAA+TGG | + | chr4_4:5117286-5117305 | Msa0665530:intron | 45.0% | |
| TGTAGCCAACCCCACTTAAT+GGG | + | chr4_4:5117287-5117306 | Msa0665530:intron | 45.0% | |
| CTTATCCCATTAAGTGGGGT+TGG | - | chr4_4:5117295-5117314 | None:intergenic | 45.0% | |
| CCAAGGCTTATCCCATTAAG+TGG | - | chr4_4:5117301-5117320 | None:intergenic | 45.0% | |
| CCACTTAATGGGATAAGCCT+TGG | + | chr4_4:5117298-5117317 | Msa0665530:intron | 45.0% | |
| !! | AGCTTTGAGCACTTCCTTTG+GGG | - | chr4_4:5117848-5117867 | None:intergenic | 45.0% |
| !! | GAGCTTTGAGCACTTCCTTT+GGG | - | chr4_4:5117849-5117868 | None:intergenic | 45.0% |
| !! | TGAGCTTTGAGCACTTCCTT+TGG | - | chr4_4:5117850-5117869 | None:intergenic | 45.0% |
| TACTCTTCAGCTTGGGATTC+AGG | - | chr4_4:5118010-5118029 | None:intergenic | 45.0% | |
| TTGCTCGTACTCTTCAGCTT+GGG | - | chr4_4:5118017-5118036 | None:intergenic | 45.0% | |
| TTTGCTCGTACTCTTCAGCT+TGG | - | chr4_4:5118018-5118037 | None:intergenic | 45.0% | |
| ! | AGCTGAAGAGTACGAGCAAA+AGG | + | chr4_4:5118018-5118037 | Msa0665530:CDS | 45.0% |
| !!! | AGGACTGCCCTGTTTTTTGA+AGG | + | chr4_4:5118038-5118057 | Msa0665530:CDS | 45.0% |
| !!! | GGACTGCCCTGTTTTTTGAA+GGG | + | chr4_4:5118039-5118058 | Msa0665530:CDS | 45.0% |
| CGTGTGAAAAAACGTGTACG+CGG | + | chr4_4:5118412-5118431 | Msa0665530:intron | 45.0% | |
| TTAATGGTGCCCTGGATTGA+AGG | - | chr4_4:5118439-5118458 | None:intergenic | 45.0% | |
| TGAACATGTTAATGGTGCCC+TGG | - | chr4_4:5118447-5118466 | None:intergenic | 45.0% | |
| !! | TGATGGATTTAGAGCTGTGG+TGG | + | chr4_4:5118492-5118511 | Msa0665530:CDS | 45.0% |
| ! | AATAACTGCTTCTGGTTGGC+AGG | + | chr4_4:5118570-5118589 | Msa0665530:CDS | 45.0% |
| GCACAAGAAACCTGTGTTGA+CGG | - | chr4_4:5118770-5118789 | None:intergenic | 45.0% | |
| !! | AATAAAAAACAAAAAATAAA+GGG | - | chr4_4:5115945-5115964 | None:intergenic | 5.0% |
| !! | TAATAAAAAACAAAAAATAA+AGG | - | chr4_4:5115946-5115965 | None:intergenic | 5.0% |
| GCTACTGTAAGAACAAGGGC+AGG | + | chr4_4:5115656-5115675 | Msa0665530:CDS | 50.0% | |
| CTAGGATCAACCTCTTGAGC+AGG | - | chr4_4:5115773-5115792 | None:intergenic | 50.0% | |
| AGGGTTATGAGGAAAGCTCC+TGG | + | chr4_4:5115839-5115858 | Msa0665530:CDS | 50.0% | |
| ATGAGGAAAGCTCCTGGTGT+TGG | + | chr4_4:5115845-5115864 | Msa0665530:CDS | 50.0% | |
| GGTTTAGCTGCTCCTCAGAT+TGG | + | chr4_4:5115866-5115885 | Msa0665530:CDS | 50.0% | |
| AACCGTATGAGGGGTAACCT+TGG | + | chr4_4:5116418-5116437 | Msa0665530:intron | 50.0% | |
| ! | CTGAAAACGGGTTCAAGTCC+TGG | + | chr4_4:5116469-5116488 | Msa0665530:intron | 50.0% |
| ! | TTACGCAAGAGGCTGTTTCC+AGG | - | chr4_4:5116490-5116509 | None:intergenic | 50.0% |
| GGATGTGCGGTAAGACTAGA+AGG | + | chr4_4:5116990-5117009 | Msa0665530:intron | 50.0% | |
| ATGGACCTTCCTCTTGCTCA+GGG | + | chr4_4:5118682-5118701 | Msa0665530:CDS | 50.0% | |
| ! | TGTGTTGACGGCCTTATCAG+AGG | - | chr4_4:5118758-5118777 | None:intergenic | 50.0% |
| TCTGATAAGGCCGTCAACAC+AGG | + | chr4_4:5118757-5118776 | Msa0665530:three_prime_UTR | 50.0% | |
| GGAGCAGCTAAACCAACACC+AGG | - | chr4_4:5115860-5115879 | None:intergenic | 55.0% | |
| CGCCAAGGTTACCCCTCATA+CGG | - | chr4_4:5116423-5116442 | None:intergenic | 55.0% | |
| GCACTGCGGCTTCAGATTGA+AGG | - | chr4_4:5116595-5116614 | None:intergenic | 55.0% | |
| TGTACGCGGTCCTTCAATCC+AGG | + | chr4_4:5118426-5118445 | Msa0665530:intron | 55.0% | |
| GTACGCGGTCCTTCAATCCA+GGG | + | chr4_4:5118427-5118446 | Msa0665530:intron | 55.0% | |
| CATGGACCTTCCTCTTGCTC+AGG | + | chr4_4:5118681-5118700 | Msa0665530:CDS | 55.0% | |
| GTTACCGAGGGCCAAGTTTC+GGG | - | chr4_4:5118711-5118730 | None:intergenic | 55.0% | |
| CGTTACCGAGGGCCAAGTTT+CGG | - | chr4_4:5118712-5118731 | None:intergenic | 55.0% | |
| CGTTGCTGCTGCCTCTGATA+AGG | + | chr4_4:5118744-5118763 | Msa0665530:three_prime_UTR | 55.0% | |
| GTGGGGGCAAACCTGAAAGC+CGG | - | chr4_4:5116017-5116036 | None:intergenic | 60.0% | |
| GGCATCCCTGAGCAAGAGGA+AGG | - | chr4_4:5118690-5118709 | None:intergenic | 60.0% | |
| TTCGGGCATCCCTGAGCAAG+AGG | - | chr4_4:5118694-5118713 | None:intergenic | 60.0% | |
| GCTCAGGGATGCCCGAAACT+TGG | + | chr4_4:5118697-5118716 | Msa0665530:CDS | 60.0% | |
| GATGCCCGAAACTTGGCCCT+CGG | + | chr4_4:5118704-5118723 | Msa0665530:CDS | 60.0% | |
| AACTTGGCCCTCGGTAACGC+AGG | + | chr4_4:5118713-5118732 | Msa0665530:exon | 60.0% | |
| GCCCTCGGTAACGCAGGTTT+CGG | + | chr4_4:5118719-5118738 | Msa0665530:exon | 60.0% | |
| CCCGAAACCTGCGTTACCGA+GGG | - | chr4_4:5118723-5118742 | None:intergenic | 60.0% | |
| CCCTCGGTAACGCAGGTTTC+GGG | + | chr4_4:5118720-5118739 | Msa0665530:exon | 60.0% | |
| TCCCGAAACCTGCGTTACCG+AGG | - | chr4_4:5118724-5118743 | None:intergenic | 60.0% | |
| ! | CTGCTTCTGGTTGGCAGGCC+CGG | + | chr4_4:5118575-5118594 | Msa0665530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 5115402 | 5119071 | 5115402 | ID=Msa0665530;Name=Msa0665530 |
| chr4_4 | mRNA | 5115402 | 5119071 | 5115402 | ID=Msa0665530-mRNA-1;Parent=Msa0665530;Name=Msa0665530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=95|1|1|1|1|1|4|342|267 |
| chr4_4 | exon | 5115402 | 5115901 | 5115402 | ID=Msa0665530-mRNA-1:exon:1679;Parent=Msa0665530-mRNA-1 |
| chr4_4 | exon | 5117805 | 5117894 | 5117805 | ID=Msa0665530-mRNA-1:exon:1680;Parent=Msa0665530-mRNA-1 |
| chr4_4 | exon | 5118002 | 5118069 | 5118002 | ID=Msa0665530-mRNA-1:exon:1681;Parent=Msa0665530-mRNA-1 |
| chr4_4 | exon | 5118489 | 5119071 | 5118489 | ID=Msa0665530-mRNA-1:exon:1682;Parent=Msa0665530-mRNA-1 |
| chr4_4 | five_prime_UTR | 5115402 | 5115496 | 5115402 | ID=Msa0665530-mRNA-1:five_prime_utr;Parent=Msa0665530-mRNA-1 |
| chr4_4 | CDS | 5115497 | 5115901 | 5115497 | ID=Msa0665530-mRNA-1:cds;Parent=Msa0665530-mRNA-1 |
| chr4_4 | CDS | 5117805 | 5117894 | 5117805 | ID=Msa0665530-mRNA-1:cds;Parent=Msa0665530-mRNA-1 |
| chr4_4 | CDS | 5118002 | 5118069 | 5118002 | ID=Msa0665530-mRNA-1:cds;Parent=Msa0665530-mRNA-1 |
| chr4_4 | CDS | 5118489 | 5118729 | 5118489 | ID=Msa0665530-mRNA-1:cds;Parent=Msa0665530-mRNA-1 |
| chr4_4 | three_prime_UTR | 5118730 | 5119071 | 5118730 | ID=Msa0665530-mRNA-1:three_prime_utr;Parent=Msa0665530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
