AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565000 MtrunA17_Chr8g0379151 94.780 364 19 0 1 364 17 380 0.0 729
Msa0565000 MtrunA17_Chr2g0283741 46.849 365 179 8 2 357 1 359 3.58e-108 321
Msa0565000 MtrunA17_Chr2g0283901 50.145 345 161 8 18 357 18 356 1.97e-106 321
Msa0565000 MtrunA17_Chr3g0144281 41.292 356 181 14 14 357 9 348 4.27e-78 243
Msa0565000 MtrunA17_Chr4g0053311 39.946 373 184 12 6 363 1 348 8.00e-77 241
Msa0565000 MtrunA17_Chr3g0134231 40.608 362 192 11 10 357 10 362 1.81e-76 243
Msa0565000 MtrunA17_Chr3g0142071 42.500 320 166 9 49 359 48 358 1.17e-75 241
Msa0565000 MtrunA17_Chr4g0040851 40.385 364 190 15 1 356 15 359 2.43e-75 237
Msa0565000 MtrunA17_Chr3g0116551 41.011 356 185 13 15 359 6 347 1.32e-74 235
Msa0565000 MtrunA17_Chr1g0208261 42.308 338 171 13 32 357 71 396 1.30e-73 237
Msa0565000 MtrunA17_Chr2g0283751 45.421 273 137 7 9 274 11 278 8.01e-71 223
Msa0565000 MtrunA17_Chr2g0325121 41.720 314 161 11 51 357 39 337 1.03e-70 224
Msa0565000 MtrunA17_Chr4g0041481 40.063 317 164 11 49 355 38 338 6.11e-69 219
Msa0565000 MtrunA17_Chr4g0024411 38.994 318 179 9 45 355 32 341 1.89e-68 218
Msa0565000 MtrunA17_Chr4g0041521 40.379 317 163 11 49 355 38 338 2.15e-68 218
Msa0565000 MtrunA17_Chr1g0153011 37.602 367 194 11 2 357 1 343 3.30e-68 221
Msa0565000 MtrunA17_Chr7g0248391 40.575 313 166 9 49 356 40 337 2.29e-67 216
Msa0565000 MtrunA17_Chr4g0058081 38.889 360 187 15 14 359 6 346 6.87e-67 215
Msa0565000 MtrunA17_Chr5g0405751 38.509 322 177 10 44 355 32 342 2.87e-66 213
Msa0565000 MtrunA17_Chr4g0040881 36.957 322 187 8 41 355 31 343 2.40e-64 208
Msa0565000 MtrunA17_Chr4g0041061 37.304 319 184 8 44 355 34 343 3.21e-64 207
Msa0565000 MtrunA17_Chr4g0041471 36.512 367 182 14 9 356 7 341 6.38e-64 207
Msa0565000 MtrunA17_Chr4g0060251 37.695 321 179 10 45 355 34 343 7.48e-64 207
Msa0565000 MtrunA17_Chr7g0248811 39.423 312 170 11 49 355 37 334 1.16e-62 203
Msa0565000 MtrunA17_Chr4g0041081 36.760 321 183 9 44 355 34 343 6.86e-62 201
Msa0565000 MtrunA17_Chr2g0315491 35.180 361 187 11 11 355 10 339 9.14e-62 201
Msa0565000 MtrunA17_Chr2g0319991 37.963 324 178 12 46 356 30 343 5.99e-61 199
Msa0565000 MtrunA17_Chr1g0155781 35.826 321 172 12 51 352 51 356 3.27e-56 187
Msa0565000 MtrunA17_Chr4g0035551 33.690 374 202 13 3 352 1 352 7.44e-56 186
Msa0565000 MtrunA17_Chr1g0199131 32.620 374 212 11 6 352 2 362 1.91e-54 183
Msa0565000 MtrunA17_Chr2g0311381 35.514 321 169 12 51 348 36 341 1.79e-53 180
Msa0565000 MtrunA17_Chr2g0311471 37.539 317 170 11 54 354 39 343 2.91e-53 179
Msa0565000 MtrunA17_Chr0c27g0493921 33.654 312 187 7 51 356 51 348 5.40e-49 168
Msa0565000 MtrunA17_Chr4g0070441 35.540 287 171 6 51 331 51 329 2.92e-48 166
Msa0565000 MtrunA17_Chr2g0311391 33.918 342 176 13 54 355 39 370 6.99e-48 166
Msa0565000 MtrunA17_Chr2g0283671 42.342 222 118 6 139 356 12 227 2.99e-45 155
Msa0565000 MtrunA17_Chr4g0036731 32.092 349 187 11 14 352 8 316 5.39e-43 152
Msa0565000 MtrunA17_Chr4g0037291 31.638 354 186 12 14 352 49 361 4.49e-42 150
Msa0565000 MtrunA17_Chr4g0036281 33.657 309 162 10 51 352 48 320 2.28e-41 147
Msa0565000 MtrunA17_Chr1g0156161 38.009 221 126 6 139 354 47 261 2.22e-40 143
Msa0565000 MtrunA17_Chr1g0156771 48.077 104 51 2 139 239 53 156 1.18e-26 103
Msa0565000 MtrunA17_Chr2g0283661 26.496 351 173 11 8 355 2 270 2.74e-26 105
Msa0565000 MtrunA17_Chr7g0248421 40.288 139 80 2 166 301 58 196 6.05e-25 100
Msa0565000 MtrunA17_Chr2g0311091 36.424 151 80 5 54 191 37 184 2.26e-22 93.2
Msa0565000 MtrunA17_Chr7g0248371 44.954 109 50 6 250 356 31 131 2.65e-18 81.3
Msa0565000 MtrunA17_Chr7g0271031 24.199 281 171 10 102 352 110 378 1.69e-12 68.2
Msa0565000 MtrunA17_Chr8g0379671 30.709 127 79 4 182 306 23 142 6.56e-12 63.5
Msa0565000 MtrunA17_Chr7g0248661 44.444 81 38 4 277 356 2 76 8.18e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565000 AT5G43060.1 42.222 360 179 12 13 357 9 354 3.24e-83 261
Msa0565000 AT4G23520.1 39.516 372 197 13 2 363 3 356 2.55e-81 252
Msa0565000 AT4G35350.1 41.111 360 192 12 6 358 8 354 9.42e-80 248
Msa0565000 AT1G20850.1 44.543 339 166 13 29 358 30 355 6.08e-79 246
Msa0565000 AT1G09850.1 44.062 320 163 9 45 358 26 335 1.25e-78 248
Msa0565000 AT1G47128.1 43.653 323 163 11 43 357 42 353 5.55e-77 244
Msa0565000 AT5G50260.1 41.341 358 183 14 13 359 4 345 1.26e-74 235
Msa0565000 AT4G11310.1 38.904 365 193 13 13 362 9 358 1.63e-74 235
Msa0565000 AT4G11320.2 37.534 373 206 12 4 362 6 365 7.99e-73 231
Msa0565000 AT4G11320.1 37.534 373 206 12 4 362 6 365 7.99e-73 231
Msa0565000 AT4G36880.1 40.000 350 186 12 25 357 20 362 1.74e-72 230
Msa0565000 AT3G48340.1 38.315 368 189 12 11 362 4 349 7.43e-71 226
Msa0565000 AT3G19400.1 40.361 332 177 13 43 364 36 356 6.42e-70 223
Msa0565000 AT3G19390.1 37.940 369 201 16 2 361 1 350 4.18e-69 224
Msa0565000 AT1G06260.1 37.394 353 197 10 12 357 8 343 3.79e-67 216
Msa0565000 AT1G29090.1 39.335 361 182 14 13 356 14 354 1.79e-66 214
Msa0565000 AT2G34080.1 36.517 356 205 12 10 356 1 344 3.32e-66 213
Msa0565000 AT3G48350.1 37.989 358 195 14 11 357 3 344 5.07e-66 213
Msa0565000 AT3G43960.1 40.549 328 177 12 46 364 36 354 1.13e-65 213
Msa0565000 AT5G45890.1 35.598 368 200 14 1 355 1 344 4.54e-65 210
Msa0565000 AT1G29080.1 37.931 319 181 10 47 356 35 345 3.87e-64 208
Msa0565000 AT3G49340.1 35.652 345 199 11 22 356 9 340 1.29e-63 206
Msa0565000 AT2G27420.1 37.363 364 194 15 10 356 1 347 7.52e-61 199
Msa0565000 AT4G35350.2 39.437 284 158 9 6 282 8 284 4.75e-57 187
Msa0565000 AT1G29110.1 33.983 359 188 14 15 356 7 333 1.58e-55 185
Msa0565000 AT3G54940.2 35.455 330 182 9 51 362 51 367 7.26e-55 184
Msa0565000 AT4G39090.1 34.535 333 182 11 51 363 51 367 1.70e-54 183
Msa0565000 AT5G60360.1 35.256 312 182 8 51 356 59 356 6.66e-53 179
Msa0565000 AT2G21430.1 36.304 303 163 11 51 333 48 340 4.45e-52 177
Msa0565000 AT5G60360.2 36.934 287 167 7 51 331 59 337 9.11e-52 176
Msa0565000 AT5G60360.3 36.934 287 167 7 51 331 59 337 1.35e-51 176
Msa0565000 AT4G16190.1 31.551 374 205 14 13 352 6 362 4.95e-50 172
Msa0565000 AT3G45310.1 33.333 312 188 9 51 356 59 356 2.80e-48 167
Msa0565000 AT3G48350.2 35.593 295 168 11 11 294 3 286 9.00e-48 164
Msa0565000 AT3G45310.2 35.192 287 172 8 51 331 59 337 1.22e-47 165
Msa0565000 AT3G19400.2 40.496 242 131 8 46 279 39 275 1.34e-47 163
Msa0565000 AT3G54940.3 35.644 202 117 3 51 243 51 248 3.98e-35 130
Msa0565000 AT4G01610.1 27.181 298 169 13 81 342 49 334 1.96e-12 68.2

Find 103 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAATTTGCAACAAATTT+TGG 0.104201 4_1:+65835850 None:intergenic
TGTAGTGCTAGCATGGAATT+TGG 0.210591 4_1:-65836106 Msa0565000:three_prime_UTR
TATTGACAACCTTCTGGTTT+TGG 0.238326 4_1:-65836844 Msa0565000:CDS
CCTATCAGCACAAGAAATTA+TGG 0.278118 4_1:-65837143 Msa0565000:CDS
CGGTGAATGGTGAAGACTAT+TGG 0.304070 4_1:-65836362 Msa0565000:CDS
GTTATTGAAGATTGGCCTTA+TGG 0.314718 4_1:-65836276 Msa0565000:CDS
CTTAGAAAAGGGAAACTAAA+TGG 0.315033 4_1:+65835983 None:intergenic
TTTACTTTAATGCATTTGGC+TGG 0.318534 4_1:-65837084 Msa0565000:CDS
TTTGGCTGGGTTATTGAAAA+TGG 0.328155 4_1:-65837070 Msa0565000:CDS
GTTACCAATGTTTGATCTCT+TGG 0.334563 4_1:+65838031 None:intergenic
CCATAATTTCTTGTGCTGAT+AGG 0.338269 4_1:+65837143 None:intergenic
CGTGCTCCTTCTTCCACAAT+TGG 0.339247 4_1:+65837846 None:intergenic
ACAACCTCTTAGTGTGAGTT+TGG 0.347332 4_1:-65836784 Msa0565000:CDS
CATCTCTATCTTTGGTAAGT+AGG 0.351412 4_1:+65837658 None:intergenic
TGTTAGTATTGACAACCTTC+TGG 0.352494 4_1:-65836850 Msa0565000:CDS
GTAGTGCTAGCATGGAATTT+GGG 0.355855 4_1:-65836105 Msa0565000:three_prime_UTR
ACCTTCCCACTTCTGTAGAT+TGG 0.361626 4_1:-65837580 Msa0565000:CDS
AAGGAGCTGTGACTGAAGTT+AGG 0.364375 4_1:-65837550 Msa0565000:CDS
CATTGGGCATTCTCAGTCAC+TGG 0.368149 4_1:-65837211 Msa0565000:CDS
AATGTTTGATCTCTTGGTCT+TGG 0.369653 4_1:+65838037 None:intergenic
TTTAAATATCTCAAATCTCT+TGG 0.377256 4_1:+65837790 None:intergenic
AAAGGAATGTTATTGAAGAT+TGG 0.377330 4_1:-65836284 Msa0565000:CDS
TGACTAAAATAGGGAGTCTA+TGG 0.386085 4_1:-65836450 Msa0565000:intron
TCTCATAATATATATAATAA+TGG 0.390953 4_1:-65836031 Msa0565000:three_prime_UTR
TCTGTAGATTGGAGGGAAAA+AGG 0.392044 4_1:-65837569 Msa0565000:CDS
AAACTCATGGGGAAAAGATT+GGG 0.397399 4_1:-65836331 Msa0565000:CDS
AGTACTAGTACATACATAAA+GGG 0.400009 4_1:+65836057 None:intergenic
TAGTACTAGTACATACATAA+AGG 0.400483 4_1:+65836056 None:intergenic
TCCATGCTAGCACTACAATA+TGG 0.402696 4_1:+65836112 None:intergenic
GGAATCTGCATCTCTATCTT+TGG 0.403742 4_1:+65837650 None:intergenic
AAGGTTACTTGTTTATCAAA+AGG 0.408095 4_1:-65836302 Msa0565000:CDS
GGACTGTGACCCTGCTAGTA+AGG 0.414218 4_1:-65837122 Msa0565000:CDS
GGCAAATGAAAGACATGTAA+TGG 0.429471 4_1:+65837946 None:intergenic
TCAGTCACTGGGGCAATTGA+AGG 0.431508 4_1:-65837199 Msa0565000:CDS
TCAAGGAATGCAAATCTTGT+TGG 0.438289 4_1:-65836405 Msa0565000:CDS
AAAACTCATGGGGAAAAGAT+TGG 0.442756 4_1:-65836332 Msa0565000:CDS
AAATCTTACGACAATTTCCT+TGG 0.443422 4_1:+65837525 None:intergenic
GCTTAGAGAAACCTATAGAT+AGG 0.448533 4_1:+65836139 None:intergenic
ATCTTCAGCCATGTAGTGGT+TGG 0.459545 4_1:-65836205 Msa0565000:exon
ACCTATAGATAGGTCTCAAA+AGG 0.463780 4_1:+65836149 None:intergenic
TCTAATCGTGGGTTATGATT+CGG 0.463790 4_1:-65836382 Msa0565000:CDS
AGGAGCTGTGACTGAAGTTA+GGG 0.480944 4_1:-65837549 Msa0565000:CDS
TTACACCAGCATAGAATTGA+AGG 0.485435 4_1:+65836751 None:intergenic
AGTGTGAGTTTGGATGCAAC+TGG 0.487456 4_1:-65836774 Msa0565000:CDS
AGATGCAGATTCCCTCCAAT+CGG 0.487597 4_1:-65837640 Msa0565000:CDS
CCTGCTAGTAAGGGTTGTGC+TGG 0.489644 4_1:-65837112 Msa0565000:CDS
CTTGAAGGAAAATGCAAACA+AGG 0.490268 4_1:-65836874 Msa0565000:intron
GCATCCAAACTCACACTAAG+AGG 0.491176 4_1:+65836780 None:intergenic
CCAGCACAACCCTTACTAGC+AGG 0.492421 4_1:+65837112 None:intergenic
TTACTTTAATGCATTTGGCT+GGG 0.503500 4_1:-65837083 Msa0565000:CDS
AAGCTTCGCATTGTCCCGAT+TGG 0.506284 4_1:+65837625 None:intergenic
GGCTGGGTTATTGAAAATGG+TGG 0.510307 4_1:-65837067 Msa0565000:CDS
CTTCGCATTGTCCCGATTGG+AGG 0.510526 4_1:+65837628 None:intergenic
GCCATATTGTAGTGCTAGCA+TGG 0.511168 4_1:-65836113 Msa0565000:three_prime_UTR
ACTCTTCCAATTGTGGAAGA+AGG 0.517582 4_1:-65837852 Msa0565000:CDS
GGAAAAGATTGGGGAGAGAA+AGG 0.518533 4_1:-65836321 Msa0565000:CDS
GCTAGTAAGGGTTGTGCTGG+AGG 0.520226 4_1:-65837109 Msa0565000:CDS
ACTGGCCTTCAATTCTATGC+TGG 0.521431 4_1:-65836756 Msa0565000:CDS
TTCCCACTTCTGTAGATTGG+AGG 0.523180 4_1:-65837577 Msa0565000:CDS
TTCCCTCCAATCTACAGAAG+TGG 0.526210 4_1:+65837574 None:intergenic
TCCCTCCAATCTACAGAAGT+GGG 0.527833 4_1:+65837575 None:intergenic
AAAGACATGTAATGGAAATG+AGG 0.531576 4_1:+65837954 None:intergenic
TGTTTGAACTCTTCCAATTG+TGG 0.531957 4_1:-65837859 Msa0565000:CDS
CTTTATCTTCAGCCATGTAG+TGG 0.532318 4_1:-65836209 Msa0565000:exon
TTGATTGCACATACACCATA+AGG 0.533070 4_1:+65836261 None:intergenic
GTGGGTTATGATTCGGTGAA+TGG 0.534697 4_1:-65836375 Msa0565000:CDS
TGCTCTAACCAACCACTACA+TGG 0.537247 4_1:+65836197 None:intergenic
GATGCAGATTCCCTCCAATC+GGG 0.537566 4_1:-65837639 Msa0565000:CDS
TTCGCATTGTCCCGATTGGA+GGG 0.550989 4_1:+65837629 None:intergenic
GCTGGGTTATTGAAAATGGT+GGG 0.551387 4_1:-65837066 Msa0565000:CDS
AATCTTGTTGGTCTAATCGT+GGG 0.553988 4_1:-65836393 Msa0565000:CDS
TCCCACTTCTGTAGATTGGA+GGG 0.556871 4_1:-65837576 Msa0565000:CDS
TTCAAACACTTCTTCATCAG+AGG 0.560590 4_1:+65837874 None:intergenic
AATTTCTAACCATGGCAAGT+TGG 0.562963 4_1:-65837906 Msa0565000:CDS
GACTGTGACCCTGCTAGTAA+GGG 0.569928 4_1:-65837121 Msa0565000:CDS
ATTGGGCATTCTCAGTCACT+GGG 0.573858 4_1:-65837210 Msa0565000:CDS
AAAACTTGTCCAACTTGCCA+TGG 0.574431 4_1:+65837897 None:intergenic
AAATCTTGTTGGTCTAATCG+TGG 0.581439 4_1:-65836394 Msa0565000:CDS
CAGAATGAACTTTGTGATGT+GGG 0.582146 4_1:+65837988 None:intergenic
TAGTGCTAGCATGGAATTTG+GGG 0.591842 4_1:-65836104 Msa0565000:three_prime_UTR
GGACTAAACAAAATAGTCAC+GGG 0.593846 4_1:-65837178 Msa0565000:CDS
AATTGTGGAAGAAGGAGCAC+GGG 0.602772 4_1:-65837844 Msa0565000:CDS
CTAAAATAGGGAGTCTATGG+TGG 0.604269 4_1:-65836447 Msa0565000:intron
CAATTGTGGAAGAAGGAGCA+CGG 0.616767 4_1:-65837845 Msa0565000:CDS
ACAGAATGAACTTTGTGATG+TGG 0.621850 4_1:+65837987 None:intergenic
AGGACTAAACAAAATAGTCA+CGG 0.622654 4_1:-65837179 Msa0565000:CDS
GTGACTGAAGTTAGGGACCA+AGG 0.628455 4_1:-65837542 Msa0565000:CDS
AACTCATGGGGAAAAGATTG+GGG 0.629466 4_1:-65836330 Msa0565000:CDS
CATAATATATATAATAATGG+TGG 0.629674 4_1:-65836028 Msa0565000:three_prime_UTR
TCCAATCTACAGAAGTGGGA+AGG 0.633136 4_1:+65837579 None:intergenic
CAGCACAACCCTTACTAGCA+GGG 0.633326 4_1:+65837113 None:intergenic
CTGATCCATCCAAAACCAGA+AGG 0.636040 4_1:+65836835 None:intergenic
TGTGCAATCAATGCTGCGGT+TGG 0.646120 4_1:-65836249 Msa0565000:CDS
GTACTAGTACATACATAAAG+GGG 0.652331 4_1:+65836058 None:intergenic
CAGTGACTGAGAATGCCCAA+TGG 0.662774 4_1:+65837212 None:intergenic
AATTGAGTACTCACTAGACA+AGG 0.669581 4_1:+65837925 None:intergenic
AGACTATGCCAATTCAGAGG+AGG 0.671634 4_1:-65837819 Msa0565000:CDS
GCGAGACTATGCCAATTCAG+AGG 0.673652 4_1:-65837822 Msa0565000:CDS
GTTTGCTGATATGAGTCCTG+AGG 0.681956 4_1:-65837693 Msa0565000:CDS
AAGACCAAGAGATCAAACAT+TGG 0.686288 4_1:-65838035 Msa0565000:five_prime_UTR
GAGTACTCAATTTCTAACCA+TGG 0.687499 4_1:-65837914 Msa0565000:CDS
TTGGGCATTCTCAGTCACTG+GGG 0.757924 4_1:-65837209 Msa0565000:CDS
TGTATGTGCAATCAATGCTG+CGG 0.774207 4_1:-65836253 Msa0565000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTCATAAACATATAT+AGG + chr4_1:65836444-65836463 None:intergenic 10.0%
!!! AATATATAAGTGAATTTTTA+AGG - chr4_1:65836552-65836571 Msa0565000:intron 10.0%
!! AAAAAAAACATATAATTTGA+TGG + chr4_1:65836997-65837016 None:intergenic 10.0%
!! TCTCATAATATATATAATAA+TGG - chr4_1:65837861-65837880 Msa0565000:CDS 10.0%
!! ATAAAAATATACTTAGAAAA+GGG + chr4_1:65837923-65837942 None:intergenic 10.0%
!! TATAAAAATATACTTAGAAA+AGG + chr4_1:65837924-65837943 None:intergenic 10.0%
!! TTAAATTCATAAACATATAT+AGG + chr4_1:65836444-65836463 None:intergenic 10.0%
!!! AATATATAAGTGAATTTTTA+AGG - chr4_1:65836552-65836571 Msa0565000:intron 10.0%
!! AAAAAAAACATATAATTTGA+TGG + chr4_1:65836997-65837016 None:intergenic 10.0%
!! TCTCATAATATATATAATAA+TGG - chr4_1:65837861-65837880 Msa0565000:CDS 10.0%
!! ATAAAAATATACTTAGAAAA+GGG + chr4_1:65837923-65837942 None:intergenic 10.0%
!! TATAAAAATATACTTAGAAA+AGG + chr4_1:65837924-65837943 None:intergenic 10.0%
!!! TAATAATCCATATATTTTCT+TGG - chr4_1:65836623-65836642 Msa0565000:intron 15.0%
!!! TATATGTTTTTTTTTCTTGA+AGG - chr4_1:65837003-65837022 Msa0565000:intron 15.0%
!!! CAAGTTAATGTTTTAAAAAT+TGG + chr4_1:65837256-65837275 None:intergenic 15.0%
!!! CAATTTTTAAAACATTAACT+TGG - chr4_1:65837254-65837273 Msa0565000:intron 15.0%
!! CATAATATATATAATAATGG+TGG - chr4_1:65837864-65837883 Msa0565000:CDS 15.0%
!!! TAATAATCCATATATTTTCT+TGG - chr4_1:65836623-65836642 Msa0565000:intron 15.0%
!!! TATATGTTTTTTTTTCTTGA+AGG - chr4_1:65837003-65837022 Msa0565000:intron 15.0%
!!! CAAGTTAATGTTTTAAAAAT+TGG + chr4_1:65837256-65837275 None:intergenic 15.0%
!!! CAATTTTTAAAACATTAACT+TGG - chr4_1:65837254-65837273 Msa0565000:intron 15.0%
!! CATAATATATATAATAATGG+TGG - chr4_1:65837864-65837883 Msa0565000:CDS 15.0%
!! TTTAAATATCTCAAATCTCT+TGG + chr4_1:65836105-65836124 None:intergenic 20.0%
!! TGAAAATTACTAATAAAGAG+TGG + chr4_1:65836406-65836425 None:intergenic 20.0%
!!! TACCTTTAGAAAGTATATAT+AGG - chr4_1:65836472-65836491 Msa0565000:intron 20.0%
!! TTCCTATATATACTTTCTAA+AGG + chr4_1:65836477-65836496 None:intergenic 20.0%
!! AATAAGTCCAAGAAAATATA+TGG + chr4_1:65836633-65836652 None:intergenic 20.0%
!!! TATCCTTATTTAGCTAAAAA+TGG - chr4_1:65836867-65836886 Msa0565000:CDS 20.0%
!! TTAGAAAAGACAAATAGTTA+AGG + chr4_1:65836929-65836948 None:intergenic 20.0%
!!! ATTGTTGTTTTGACTAAAAT+AGG - chr4_1:65837432-65837451 Msa0565000:intron 20.0%
!!! TTGTTGTTTTGACTAAAATA+GGG - chr4_1:65837433-65837452 Msa0565000:intron 20.0%
!! TTTAAATATCTCAAATCTCT+TGG + chr4_1:65836105-65836124 None:intergenic 20.0%
!! TGAAAATTACTAATAAAGAG+TGG + chr4_1:65836406-65836425 None:intergenic 20.0%
!!! TACCTTTAGAAAGTATATAT+AGG - chr4_1:65836472-65836491 Msa0565000:intron 20.0%
!! TTCCTATATATACTTTCTAA+AGG + chr4_1:65836477-65836496 None:intergenic 20.0%
!! AATAAGTCCAAGAAAATATA+TGG + chr4_1:65836633-65836652 None:intergenic 20.0%
!!! TATCCTTATTTAGCTAAAAA+TGG - chr4_1:65836867-65836886 Msa0565000:CDS 20.0%
!! TTAGAAAAGACAAATAGTTA+AGG + chr4_1:65836929-65836948 None:intergenic 20.0%
!!! ATTGTTGTTTTGACTAAAAT+AGG - chr4_1:65837432-65837451 Msa0565000:intron 20.0%
!!! TTGTTGTTTTGACTAAAATA+GGG - chr4_1:65837433-65837452 Msa0565000:intron 20.0%
!! GGTTTTTACTTTAATGCATT+TGG - chr4_1:65836804-65836823 Msa0565000:CDS 25.0%
!!! GTACCATTTTTAGCTAAATA+AGG + chr4_1:65836873-65836892 None:intergenic 25.0%
! GTGTTCATATATGTTTCAAA+AGG - chr4_1:65837325-65837344 Msa0565000:intron 25.0%
! AAGGTTACTTGTTTATCAAA+AGG - chr4_1:65837590-65837609 Msa0565000:CDS 25.0%
! AAAGGAATGTTATTGAAGAT+TGG - chr4_1:65837608-65837627 Msa0565000:CDS 25.0%
!!! AAGATAAAGCTGTTTTGATT+GGG + chr4_1:65837672-65837691 None:intergenic 25.0%
! AGTACTAGTACATACATAAA+GGG + chr4_1:65837838-65837857 None:intergenic 25.0%
! TAGTACTAGTACATACATAA+AGG + chr4_1:65837839-65837858 None:intergenic 25.0%
!! GGTTTTTACTTTAATGCATT+TGG - chr4_1:65836804-65836823 Msa0565000:CDS 25.0%
!!! GTACCATTTTTAGCTAAATA+AGG + chr4_1:65836873-65836892 None:intergenic 25.0%
! GTGTTCATATATGTTTCAAA+AGG - chr4_1:65837325-65837344 Msa0565000:intron 25.0%
! AAGGTTACTTGTTTATCAAA+AGG - chr4_1:65837590-65837609 Msa0565000:CDS 25.0%
! AAAGGAATGTTATTGAAGAT+TGG - chr4_1:65837608-65837627 Msa0565000:CDS 25.0%
!!! AAGATAAAGCTGTTTTGATT+GGG + chr4_1:65837672-65837691 None:intergenic 25.0%
! AGTACTAGTACATACATAAA+GGG + chr4_1:65837838-65837857 None:intergenic 25.0%
! TAGTACTAGTACATACATAA+AGG + chr4_1:65837839-65837858 None:intergenic 25.0%
! AAAGACATGTAATGGAAATG+AGG + chr4_1:65835941-65835960 None:intergenic 30.0%
AAATCTTACGACAATTTCCT+TGG + chr4_1:65836370-65836389 None:intergenic 30.0%
!! TTATTTTCTAGAGAGCCATT+GGG - chr4_1:65836665-65836684 Msa0565000:intron 30.0%
AGGACTAAACAAAATAGTCA+CGG - chr4_1:65836713-65836732 Msa0565000:intron 30.0%
TTTACTTTAATGCATTTGGC+TGG - chr4_1:65836808-65836827 Msa0565000:CDS 30.0%
TTACTTTAATGCATTTGGCT+GGG - chr4_1:65836809-65836828 Msa0565000:CDS 30.0%
TAAACTTTAGTGCTAATGTG+AGG - chr4_1:65837303-65837322 Msa0565000:intron 30.0%
TTAGATAGATAGATCACATC+AGG + chr4_1:65837356-65837375 None:intergenic 30.0%
AGAACTGCAAAAAAGATTCA+AGG - chr4_1:65837470-65837489 Msa0565000:intron 30.0%
ATTGGATTGTGAAAAACTCA+TGG - chr4_1:65837548-65837567 Msa0565000:CDS 30.0%
TTGGATTGTGAAAAACTCAT+GGG - chr4_1:65837549-65837568 Msa0565000:CDS 30.0%
!!! GAAGATAAAGCTGTTTTGAT+TGG + chr4_1:65837673-65837692 None:intergenic 30.0%
GTACTAGTACATACATAAAG+GGG + chr4_1:65837837-65837856 None:intergenic 30.0%
CTTAGAAAAGGGAAACTAAA+TGG + chr4_1:65837912-65837931 None:intergenic 30.0%
!!! ATTTGCAACAAATTTTGGCT+CGG + chr4_1:65838040-65838059 None:intergenic 30.0%
! AAAGACATGTAATGGAAATG+AGG + chr4_1:65835941-65835960 None:intergenic 30.0%
AAATCTTACGACAATTTCCT+TGG + chr4_1:65836370-65836389 None:intergenic 30.0%
!! TTATTTTCTAGAGAGCCATT+GGG - chr4_1:65836665-65836684 Msa0565000:intron 30.0%
AGGACTAAACAAAATAGTCA+CGG - chr4_1:65836713-65836732 Msa0565000:intron 30.0%
TTTACTTTAATGCATTTGGC+TGG - chr4_1:65836808-65836827 Msa0565000:CDS 30.0%
TTACTTTAATGCATTTGGCT+GGG - chr4_1:65836809-65836828 Msa0565000:CDS 30.0%
TAAACTTTAGTGCTAATGTG+AGG - chr4_1:65837303-65837322 Msa0565000:intron 30.0%
TTAGATAGATAGATCACATC+AGG + chr4_1:65837356-65837375 None:intergenic 30.0%
AGAACTGCAAAAAAGATTCA+AGG - chr4_1:65837470-65837489 Msa0565000:intron 30.0%
ATTGGATTGTGAAAAACTCA+TGG - chr4_1:65837548-65837567 Msa0565000:CDS 30.0%
TTGGATTGTGAAAAACTCAT+GGG - chr4_1:65837549-65837568 Msa0565000:CDS 30.0%
!!! GAAGATAAAGCTGTTTTGAT+TGG + chr4_1:65837673-65837692 None:intergenic 30.0%
GTACTAGTACATACATAAAG+GGG + chr4_1:65837837-65837856 None:intergenic 30.0%
CTTAGAAAAGGGAAACTAAA+TGG + chr4_1:65837912-65837931 None:intergenic 30.0%
!!! ATTTGCAACAAATTTTGGCT+CGG + chr4_1:65838040-65838059 None:intergenic 30.0%
AATGTTTGATCTCTTGGTCT+TGG + chr4_1:65835858-65835877 None:intergenic 35.0%
AAGACCAAGAGATCAAACAT+TGG - chr4_1:65835857-65835876 Msa0565000:three_prime_UTR 35.0%
GTTACCAATGTTTGATCTCT+TGG + chr4_1:65835864-65835883 None:intergenic 35.0%
CAGAATGAACTTTGTGATGT+GGG + chr4_1:65835907-65835926 None:intergenic 35.0%
ACAGAATGAACTTTGTGATG+TGG + chr4_1:65835908-65835927 None:intergenic 35.0%
GGCAAATGAAAGACATGTAA+TGG + chr4_1:65835949-65835968 None:intergenic 35.0%
AATTGAGTACTCACTAGACA+AGG + chr4_1:65835970-65835989 None:intergenic 35.0%
GAGTACTCAATTTCTAACCA+TGG - chr4_1:65835978-65835997 Msa0565000:three_prime_UTR 35.0%
AATTTCTAACCATGGCAAGT+TGG - chr4_1:65835986-65836005 Msa0565000:three_prime_UTR 35.0%
TTCAAACACTTCTTCATCAG+AGG + chr4_1:65836021-65836040 None:intergenic 35.0%
TGTTTGAACTCTTCCAATTG+TGG - chr4_1:65836033-65836052 Msa0565000:three_prime_UTR 35.0%
! TAGGTTTTACTAAACTCCTC+AGG + chr4_1:65836218-65836237 None:intergenic 35.0%
CATCTCTATCTTTGGTAAGT+AGG + chr4_1:65836237-65836256 None:intergenic 35.0%
!! GTTATTTTCTAGAGAGCCAT+TGG - chr4_1:65836664-65836683 Msa0565000:intron 35.0%
GGACTAAACAAAATAGTCAC+GGG - chr4_1:65836714-65836733 Msa0565000:intron 35.0%
! CCATAATTTCTTGTGCTGAT+AGG + chr4_1:65836752-65836771 None:intergenic 35.0%
CCTATCAGCACAAGAAATTA+TGG - chr4_1:65836749-65836768 Msa0565000:intron 35.0%
TTTGGCTGGGTTATTGAAAA+TGG - chr4_1:65836822-65836841 Msa0565000:CDS 35.0%
AGCTAAAAATGGTACTTGCA+AGG - chr4_1:65836878-65836897 Msa0565000:intron 35.0%
! CATTCTAACATCTTAGCTTG+TGG - chr4_1:65836969-65836988 Msa0565000:intron 35.0%
CTTGAAGGAAAATGCAAACA+AGG - chr4_1:65837018-65837037 Msa0565000:CDS 35.0%
!! TGTTAGTATTGACAACCTTC+TGG - chr4_1:65837042-65837061 Msa0565000:CDS 35.0%
!!! TATTGACAACCTTCTGGTTT+TGG - chr4_1:65837048-65837067 Msa0565000:CDS 35.0%
TTACACCAGCATAGAATTGA+AGG + chr4_1:65837144-65837163 None:intergenic 35.0%
TGACTAAAATAGGGAGTCTA+TGG - chr4_1:65837442-65837461 Msa0565000:intron 35.0%
TCAAGGAATGCAAATCTTGT+TGG - chr4_1:65837487-65837506 Msa0565000:intron 35.0%
! AAATCTTGTTGGTCTAATCG+TGG - chr4_1:65837498-65837517 Msa0565000:intron 35.0%
! AATCTTGTTGGTCTAATCGT+GGG - chr4_1:65837499-65837518 Msa0565000:intron 35.0%
! TCTAATCGTGGGTTATGATT+CGG - chr4_1:65837510-65837529 Msa0565000:intron 35.0%
TGGATTGTGAAAAACTCATG+GGG - chr4_1:65837550-65837569 Msa0565000:CDS 35.0%
AAAACTCATGGGGAAAAGAT+TGG - chr4_1:65837560-65837579 Msa0565000:CDS 35.0%
AAACTCATGGGGAAAAGATT+GGG - chr4_1:65837561-65837580 Msa0565000:CDS 35.0%
!! GTTATTGAAGATTGGCCTTA+TGG - chr4_1:65837616-65837635 Msa0565000:CDS 35.0%
TTGATTGCACATACACCATA+AGG + chr4_1:65837634-65837653 None:intergenic 35.0%
!!! TCCTTTTGAGACCTATCTAT+AGG - chr4_1:65837742-65837761 Msa0565000:CDS 35.0%
ACCTATAGATAGGTCTCAAA+AGG + chr4_1:65837746-65837765 None:intergenic 35.0%
GCTTAGAGAAACCTATAGAT+AGG + chr4_1:65837756-65837775 None:intergenic 35.0%
! GTCAACTCATTTTGTATGCT+GGG + chr4_1:65838017-65838036 None:intergenic 35.0%
!!! TTTGCAACAAATTTTGGCTC+GGG + chr4_1:65838039-65838058 None:intergenic 35.0%
AATGTTTGATCTCTTGGTCT+TGG + chr4_1:65835858-65835877 None:intergenic 35.0%
AAGACCAAGAGATCAAACAT+TGG - chr4_1:65835857-65835876 Msa0565000:three_prime_UTR 35.0%
GTTACCAATGTTTGATCTCT+TGG + chr4_1:65835864-65835883 None:intergenic 35.0%
CAGAATGAACTTTGTGATGT+GGG + chr4_1:65835907-65835926 None:intergenic 35.0%
ACAGAATGAACTTTGTGATG+TGG + chr4_1:65835908-65835927 None:intergenic 35.0%
GGCAAATGAAAGACATGTAA+TGG + chr4_1:65835949-65835968 None:intergenic 35.0%
AATTGAGTACTCACTAGACA+AGG + chr4_1:65835970-65835989 None:intergenic 35.0%
GAGTACTCAATTTCTAACCA+TGG - chr4_1:65835978-65835997 Msa0565000:three_prime_UTR 35.0%
AATTTCTAACCATGGCAAGT+TGG - chr4_1:65835986-65836005 Msa0565000:three_prime_UTR 35.0%
TTCAAACACTTCTTCATCAG+AGG + chr4_1:65836021-65836040 None:intergenic 35.0%
TGTTTGAACTCTTCCAATTG+TGG - chr4_1:65836033-65836052 Msa0565000:three_prime_UTR 35.0%
! TAGGTTTTACTAAACTCCTC+AGG + chr4_1:65836218-65836237 None:intergenic 35.0%
CATCTCTATCTTTGGTAAGT+AGG + chr4_1:65836237-65836256 None:intergenic 35.0%
!! GTTATTTTCTAGAGAGCCAT+TGG - chr4_1:65836664-65836683 Msa0565000:intron 35.0%
GGACTAAACAAAATAGTCAC+GGG - chr4_1:65836714-65836733 Msa0565000:intron 35.0%
! CCATAATTTCTTGTGCTGAT+AGG + chr4_1:65836752-65836771 None:intergenic 35.0%
CCTATCAGCACAAGAAATTA+TGG - chr4_1:65836749-65836768 Msa0565000:intron 35.0%
TTTGGCTGGGTTATTGAAAA+TGG - chr4_1:65836822-65836841 Msa0565000:CDS 35.0%
AGCTAAAAATGGTACTTGCA+AGG - chr4_1:65836878-65836897 Msa0565000:intron 35.0%
! CATTCTAACATCTTAGCTTG+TGG - chr4_1:65836969-65836988 Msa0565000:intron 35.0%
CTTGAAGGAAAATGCAAACA+AGG - chr4_1:65837018-65837037 Msa0565000:CDS 35.0%
!! TGTTAGTATTGACAACCTTC+TGG - chr4_1:65837042-65837061 Msa0565000:CDS 35.0%
!!! TATTGACAACCTTCTGGTTT+TGG - chr4_1:65837048-65837067 Msa0565000:CDS 35.0%
TTACACCAGCATAGAATTGA+AGG + chr4_1:65837144-65837163 None:intergenic 35.0%
TGACTAAAATAGGGAGTCTA+TGG - chr4_1:65837442-65837461 Msa0565000:intron 35.0%
TCAAGGAATGCAAATCTTGT+TGG - chr4_1:65837487-65837506 Msa0565000:intron 35.0%
! AAATCTTGTTGGTCTAATCG+TGG - chr4_1:65837498-65837517 Msa0565000:intron 35.0%
! AATCTTGTTGGTCTAATCGT+GGG - chr4_1:65837499-65837518 Msa0565000:intron 35.0%
! TCTAATCGTGGGTTATGATT+CGG - chr4_1:65837510-65837529 Msa0565000:intron 35.0%
TGGATTGTGAAAAACTCATG+GGG - chr4_1:65837550-65837569 Msa0565000:CDS 35.0%
AAAACTCATGGGGAAAAGAT+TGG - chr4_1:65837560-65837579 Msa0565000:CDS 35.0%
AAACTCATGGGGAAAAGATT+GGG - chr4_1:65837561-65837580 Msa0565000:CDS 35.0%
!! GTTATTGAAGATTGGCCTTA+TGG - chr4_1:65837616-65837635 Msa0565000:CDS 35.0%
TTGATTGCACATACACCATA+AGG + chr4_1:65837634-65837653 None:intergenic 35.0%
!!! TCCTTTTGAGACCTATCTAT+AGG - chr4_1:65837742-65837761 Msa0565000:CDS 35.0%
ACCTATAGATAGGTCTCAAA+AGG + chr4_1:65837746-65837765 None:intergenic 35.0%
GCTTAGAGAAACCTATAGAT+AGG + chr4_1:65837756-65837775 None:intergenic 35.0%
! GTCAACTCATTTTGTATGCT+GGG + chr4_1:65838017-65838036 None:intergenic 35.0%
!!! TTTGCAACAAATTTTGGCTC+GGG + chr4_1:65838039-65838058 None:intergenic 35.0%
AAAACTTGTCCAACTTGCCA+TGG + chr4_1:65835998-65836017 None:intergenic 40.0%
ACTCTTCCAATTGTGGAAGA+AGG - chr4_1:65836040-65836059 Msa0565000:three_prime_UTR 40.0%
GGAATCTGCATCTCTATCTT+TGG + chr4_1:65836245-65836264 None:intergenic 40.0%
TCTGTAGATTGGAGGGAAAA+AGG - chr4_1:65836323-65836342 Msa0565000:CDS 40.0%
GCTGGGTTATTGAAAATGGT+GGG - chr4_1:65836826-65836845 Msa0565000:CDS 40.0%
ACAACCTCTTAGTGTGAGTT+TGG - chr4_1:65837108-65837127 Msa0565000:CDS 40.0%
CTAAAATAGGGAGTCTATGG+TGG - chr4_1:65837445-65837464 Msa0565000:intron 40.0%
AACTCATGGGGAAAAGATTG+GGG - chr4_1:65837562-65837581 Msa0565000:CDS 40.0%
TGTATGTGCAATCAATGCTG+CGG - chr4_1:65837639-65837658 Msa0565000:CDS 40.0%
CTTTATCTTCAGCCATGTAG+TGG - chr4_1:65837683-65837702 Msa0565000:CDS 40.0%
TCCATGCTAGCACTACAATA+TGG + chr4_1:65837783-65837802 None:intergenic 40.0%
TGTAGTGCTAGCATGGAATT+TGG - chr4_1:65837786-65837805 Msa0565000:CDS 40.0%
GTAGTGCTAGCATGGAATTT+GGG - chr4_1:65837787-65837806 Msa0565000:CDS 40.0%
TAGTGCTAGCATGGAATTTG+GGG - chr4_1:65837788-65837807 Msa0565000:CDS 40.0%
! GGTCAACTCATTTTGTATGC+TGG + chr4_1:65838018-65838037 None:intergenic 40.0%
AAAACTTGTCCAACTTGCCA+TGG + chr4_1:65835998-65836017 None:intergenic 40.0%
ACTCTTCCAATTGTGGAAGA+AGG - chr4_1:65836040-65836059 Msa0565000:three_prime_UTR 40.0%
GGAATCTGCATCTCTATCTT+TGG + chr4_1:65836245-65836264 None:intergenic 40.0%
TCTGTAGATTGGAGGGAAAA+AGG - chr4_1:65836323-65836342 Msa0565000:CDS 40.0%
GCTGGGTTATTGAAAATGGT+GGG - chr4_1:65836826-65836845 Msa0565000:CDS 40.0%
ACAACCTCTTAGTGTGAGTT+TGG - chr4_1:65837108-65837127 Msa0565000:CDS 40.0%
CTAAAATAGGGAGTCTATGG+TGG - chr4_1:65837445-65837464 Msa0565000:intron 40.0%
AACTCATGGGGAAAAGATTG+GGG - chr4_1:65837562-65837581 Msa0565000:CDS 40.0%
TGTATGTGCAATCAATGCTG+CGG - chr4_1:65837639-65837658 Msa0565000:CDS 40.0%
CTTTATCTTCAGCCATGTAG+TGG - chr4_1:65837683-65837702 Msa0565000:CDS 40.0%
TCCATGCTAGCACTACAATA+TGG + chr4_1:65837783-65837802 None:intergenic 40.0%
TGTAGTGCTAGCATGGAATT+TGG - chr4_1:65837786-65837805 Msa0565000:CDS 40.0%
GTAGTGCTAGCATGGAATTT+GGG - chr4_1:65837787-65837806 Msa0565000:CDS 40.0%
TAGTGCTAGCATGGAATTTG+GGG - chr4_1:65837788-65837807 Msa0565000:CDS 40.0%
! GGTCAACTCATTTTGTATGC+TGG + chr4_1:65838018-65838037 None:intergenic 40.0%
CAATTGTGGAAGAAGGAGCA+CGG - chr4_1:65836047-65836066 Msa0565000:three_prime_UTR 45.0%
! AATTGTGGAAGAAGGAGCAC+GGG - chr4_1:65836048-65836067 Msa0565000:three_prime_UTR 45.0%
AGACTATGCCAATTCAGAGG+AGG - chr4_1:65836073-65836092 Msa0565000:three_prime_UTR 45.0%
! GGCATTTTCCTCCTCTGAAT+TGG + chr4_1:65836084-65836103 None:intergenic 45.0%
! GTTTGCTGATATGAGTCCTG+AGG - chr4_1:65836199-65836218 Msa0565000:exon 45.0%
AGATGCAGATTCCCTCCAAT+CGG - chr4_1:65836252-65836271 Msa0565000:CDS 45.0%
ACCTTCCCACTTCTGTAGAT+TGG - chr4_1:65836312-65836331 Msa0565000:CDS 45.0%
TCCAATCTACAGAAGTGGGA+AGG + chr4_1:65836316-65836335 None:intergenic 45.0%
TTCCCACTTCTGTAGATTGG+AGG - chr4_1:65836315-65836334 Msa0565000:CDS 45.0%
TCCCACTTCTGTAGATTGGA+GGG - chr4_1:65836316-65836335 Msa0565000:CDS 45.0%
TCCCTCCAATCTACAGAAGT+GGG + chr4_1:65836320-65836339 None:intergenic 45.0%
TTCCCTCCAATCTACAGAAG+TGG + chr4_1:65836321-65836340 None:intergenic 45.0%
AAGGAGCTGTGACTGAAGTT+AGG - chr4_1:65836342-65836361 Msa0565000:CDS 45.0%
AGGAGCTGTGACTGAAGTTA+GGG - chr4_1:65836343-65836362 Msa0565000:CDS 45.0%
ATTGGGCATTCTCAGTCACT+GGG - chr4_1:65836682-65836701 Msa0565000:intron 45.0%
GGCTGGGTTATTGAAAATGG+TGG - chr4_1:65836825-65836844 Msa0565000:CDS 45.0%
!!! GACAACCTTCTGGTTTTGGA+TGG - chr4_1:65837052-65837071 Msa0565000:CDS 45.0%
CTGATCCATCCAAAACCAGA+AGG + chr4_1:65837060-65837079 None:intergenic 45.0%
GCATCCAAACTCACACTAAG+AGG + chr4_1:65837115-65837134 None:intergenic 45.0%
AGTGTGAGTTTGGATGCAAC+TGG - chr4_1:65837118-65837137 Msa0565000:CDS 45.0%
!! ACTGGCCTTCAATTCTATGC+TGG - chr4_1:65837136-65837155 Msa0565000:CDS 45.0%
!! GTGGGTTATGATTCGGTGAA+TGG - chr4_1:65837517-65837536 Msa0565000:intron 45.0%
CGGTGAATGGTGAAGACTAT+TGG - chr4_1:65837530-65837549 Msa0565000:intron 45.0%
GGAAAAGATTGGGGAGAGAA+AGG - chr4_1:65837571-65837590 Msa0565000:CDS 45.0%
ATCTTCAGCCATGTAGTGGT+TGG - chr4_1:65837687-65837706 Msa0565000:CDS 45.0%
TGCTCTAACCAACCACTACA+TGG + chr4_1:65837698-65837717 None:intergenic 45.0%
GCCATATTGTAGTGCTAGCA+TGG - chr4_1:65837779-65837798 Msa0565000:CDS 45.0%
CAATTGTGGAAGAAGGAGCA+CGG - chr4_1:65836047-65836066 Msa0565000:three_prime_UTR 45.0%
! AATTGTGGAAGAAGGAGCAC+GGG - chr4_1:65836048-65836067 Msa0565000:three_prime_UTR 45.0%
AGACTATGCCAATTCAGAGG+AGG - chr4_1:65836073-65836092 Msa0565000:three_prime_UTR 45.0%
! GGCATTTTCCTCCTCTGAAT+TGG + chr4_1:65836084-65836103 None:intergenic 45.0%
! GTTTGCTGATATGAGTCCTG+AGG - chr4_1:65836199-65836218 Msa0565000:exon 45.0%
AGATGCAGATTCCCTCCAAT+CGG - chr4_1:65836252-65836271 Msa0565000:CDS 45.0%
ACCTTCCCACTTCTGTAGAT+TGG - chr4_1:65836312-65836331 Msa0565000:CDS 45.0%
TCCAATCTACAGAAGTGGGA+AGG + chr4_1:65836316-65836335 None:intergenic 45.0%
TTCCCACTTCTGTAGATTGG+AGG - chr4_1:65836315-65836334 Msa0565000:CDS 45.0%
TCCCACTTCTGTAGATTGGA+GGG - chr4_1:65836316-65836335 Msa0565000:CDS 45.0%
TCCCTCCAATCTACAGAAGT+GGG + chr4_1:65836320-65836339 None:intergenic 45.0%
TTCCCTCCAATCTACAGAAG+TGG + chr4_1:65836321-65836340 None:intergenic 45.0%
AAGGAGCTGTGACTGAAGTT+AGG - chr4_1:65836342-65836361 Msa0565000:CDS 45.0%
AGGAGCTGTGACTGAAGTTA+GGG - chr4_1:65836343-65836362 Msa0565000:CDS 45.0%
ATTGGGCATTCTCAGTCACT+GGG - chr4_1:65836682-65836701 Msa0565000:intron 45.0%
GGCTGGGTTATTGAAAATGG+TGG - chr4_1:65836825-65836844 Msa0565000:CDS 45.0%
!!! GACAACCTTCTGGTTTTGGA+TGG - chr4_1:65837052-65837071 Msa0565000:CDS 45.0%
CTGATCCATCCAAAACCAGA+AGG + chr4_1:65837060-65837079 None:intergenic 45.0%
GCATCCAAACTCACACTAAG+AGG + chr4_1:65837115-65837134 None:intergenic 45.0%
AGTGTGAGTTTGGATGCAAC+TGG - chr4_1:65837118-65837137 Msa0565000:CDS 45.0%
!! ACTGGCCTTCAATTCTATGC+TGG - chr4_1:65837136-65837155 Msa0565000:CDS 45.0%
!! GTGGGTTATGATTCGGTGAA+TGG - chr4_1:65837517-65837536 Msa0565000:intron 45.0%
CGGTGAATGGTGAAGACTAT+TGG - chr4_1:65837530-65837549 Msa0565000:intron 45.0%
GGAAAAGATTGGGGAGAGAA+AGG - chr4_1:65837571-65837590 Msa0565000:CDS 45.0%
ATCTTCAGCCATGTAGTGGT+TGG - chr4_1:65837687-65837706 Msa0565000:CDS 45.0%
TGCTCTAACCAACCACTACA+TGG + chr4_1:65837698-65837717 None:intergenic 45.0%
GCCATATTGTAGTGCTAGCA+TGG - chr4_1:65837779-65837798 Msa0565000:CDS 45.0%
CGTGCTCCTTCTTCCACAAT+TGG + chr4_1:65836049-65836068 None:intergenic 50.0%
GCGAGACTATGCCAATTCAG+AGG - chr4_1:65836070-65836089 Msa0565000:three_prime_UTR 50.0%
GATGCAGATTCCCTCCAATC+GGG - chr4_1:65836253-65836272 Msa0565000:CDS 50.0%
TTCGCATTGTCCCGATTGGA+GGG + chr4_1:65836266-65836285 None:intergenic 50.0%
AAGCTTCGCATTGTCCCGAT+TGG + chr4_1:65836270-65836289 None:intergenic 50.0%
GTGACTGAAGTTAGGGACCA+AGG - chr4_1:65836350-65836369 Msa0565000:CDS 50.0%
CAGTGACTGAGAATGCCCAA+TGG + chr4_1:65836683-65836702 None:intergenic 50.0%
CATTGGGCATTCTCAGTCAC+TGG - chr4_1:65836681-65836700 Msa0565000:intron 50.0%
TTGGGCATTCTCAGTCACTG+GGG - chr4_1:65836683-65836702 Msa0565000:intron 50.0%
TCAGTCACTGGGGCAATTGA+AGG - chr4_1:65836693-65836712 Msa0565000:intron 50.0%
GACTGTGACCCTGCTAGTAA+GGG - chr4_1:65836771-65836790 Msa0565000:CDS 50.0%
CAGCACAACCCTTACTAGCA+GGG + chr4_1:65836782-65836801 None:intergenic 50.0%
TGTGCAATCAATGCTGCGGT+TGG - chr4_1:65837643-65837662 Msa0565000:CDS 50.0%
CGTGCTCCTTCTTCCACAAT+TGG + chr4_1:65836049-65836068 None:intergenic 50.0%
GCGAGACTATGCCAATTCAG+AGG - chr4_1:65836070-65836089 Msa0565000:three_prime_UTR 50.0%
GATGCAGATTCCCTCCAATC+GGG - chr4_1:65836253-65836272 Msa0565000:CDS 50.0%
TTCGCATTGTCCCGATTGGA+GGG + chr4_1:65836266-65836285 None:intergenic 50.0%
AAGCTTCGCATTGTCCCGAT+TGG + chr4_1:65836270-65836289 None:intergenic 50.0%
GTGACTGAAGTTAGGGACCA+AGG - chr4_1:65836350-65836369 Msa0565000:CDS 50.0%
CAGTGACTGAGAATGCCCAA+TGG + chr4_1:65836683-65836702 None:intergenic 50.0%
CATTGGGCATTCTCAGTCAC+TGG - chr4_1:65836681-65836700 Msa0565000:intron 50.0%
TTGGGCATTCTCAGTCACTG+GGG - chr4_1:65836683-65836702 Msa0565000:intron 50.0%
TCAGTCACTGGGGCAATTGA+AGG - chr4_1:65836693-65836712 Msa0565000:intron 50.0%
GACTGTGACCCTGCTAGTAA+GGG - chr4_1:65836771-65836790 Msa0565000:CDS 50.0%
CAGCACAACCCTTACTAGCA+GGG + chr4_1:65836782-65836801 None:intergenic 50.0%
TGTGCAATCAATGCTGCGGT+TGG - chr4_1:65837643-65837662 Msa0565000:CDS 50.0%
CTTCGCATTGTCCCGATTGG+AGG + chr4_1:65836267-65836286 None:intergenic 55.0%
GGACTGTGACCCTGCTAGTA+AGG - chr4_1:65836770-65836789 Msa0565000:CDS 55.0%
CCAGCACAACCCTTACTAGC+AGG + chr4_1:65836783-65836802 None:intergenic 55.0%
CCTGCTAGTAAGGGTTGTGC+TGG - chr4_1:65836780-65836799 Msa0565000:CDS 55.0%
GCTAGTAAGGGTTGTGCTGG+AGG - chr4_1:65836783-65836802 Msa0565000:CDS 55.0%
CTTCGCATTGTCCCGATTGG+AGG + chr4_1:65836267-65836286 None:intergenic 55.0%
GGACTGTGACCCTGCTAGTA+AGG - chr4_1:65836770-65836789 Msa0565000:CDS 55.0%
CCAGCACAACCCTTACTAGC+AGG + chr4_1:65836783-65836802 None:intergenic 55.0%
CCTGCTAGTAAGGGTTGTGC+TGG - chr4_1:65836780-65836799 Msa0565000:CDS 55.0%
GCTAGTAAGGGTTGTGCTGG+AGG - chr4_1:65836783-65836802 Msa0565000:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 65835851 65838063 65835851 ID=Msa0565000;Name=Msa0565000
chr4_1 mRNA 65835851 65838063 65835851 ID=Msa0565000-mRNA-1;Parent=Msa0565000;Name=Msa0565000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43|1|1|1|1|1|4|361|364
chr4_1 exon 65835851 65836460 65835851 ID=Msa0565000-mRNA-1:exon:21271;Parent=Msa0565000-mRNA-1
chr4_1 exon 65836755 65836889 65836755 ID=Msa0565000-mRNA-1:exon:21270;Parent=Msa0565000-mRNA-1
chr4_1 exon 65837015 65837238 65837015 ID=Msa0565000-mRNA-1:exon:21269;Parent=Msa0565000-mRNA-1
chr4_1 exon 65837534 65838063 65837534 ID=Msa0565000-mRNA-1:exon:21268;Parent=Msa0565000-mRNA-1
chr4_1 five_prime_UTR 65838021 65838063 65838021 ID=Msa0565000-mRNA-1:five_prime_utr;Parent=Msa0565000-mRNA-1
chr4_1 CDS 65837534 65838020 65837534 ID=Msa0565000-mRNA-1:cds;Parent=Msa0565000-mRNA-1
chr4_1 CDS 65837015 65837238 65837015 ID=Msa0565000-mRNA-1:cds;Parent=Msa0565000-mRNA-1
chr4_1 CDS 65836755 65836889 65836755 ID=Msa0565000-mRNA-1:cds;Parent=Msa0565000-mRNA-1
chr4_1 CDS 65836212 65836460 65836212 ID=Msa0565000-mRNA-1:cds;Parent=Msa0565000-mRNA-1
chr4_1 three_prime_UTR 65835851 65836211 65835851 ID=Msa0565000-mRNA-1:three_prime_utr;Parent=Msa0565000-mRNA-1
Gene Sequence

>Msa0565000

ATGATGATATCCCACATCACAAAGTTCATTCTGTCTTTTTTAATCCTCATTTCCATTACATGTCTTTCATTTGCCTTGTCTAGTGAGTACTCAATTTCTAACCATGGCAAGTTGGACAAGTTTTCCTCTGATGAAGAAGTGTTTGAACTCTTCCAATTGTGGAAGAAGGAGCACGGGCGAGACTATGCCAATTCAGAGGAGGAAAATGCCAAGAGATTTGAGATATTTAAAAGCAATTTTAAGTATATCAATGAGATGAATGCAAAGAGAAAATCACAAACACAACATCGTTTGAGTCTCAACAAGTTTGCTGATATGAGTCCTGAGGAGTTTAGTAAAACCTACTTACCAAAGATAGAGATGCAGATTCCCTCCAATCGGGACAATGCGAAGCTTAGAGATGATGATGATTGTGAAAACCTTCCCACTTCTGTAGATTGGAGGGAAAAAGGAGCTGTGACTGAAGTTAGGGACCAAGGAAATTGTCAGAGCCATTGGGCATTCTCAGTCACTGGGGCAATTGAAGGACTAAACAAAATAGTCACGGGAAATCTTATCAACCTATCAGCACAAGAAATTATGGACTGTGACCCTGCTAGTAAGGGTTGTGCTGGAGGTTTTTACTTTAATGCATTTGGCTGGGTTATTGAAAATGGTGGGATTGATACAGAAGCTAACTATCCTTATTTAGCTAAAAATGGTACTTGCAAGGAAAATGCAAACAAGGTTGTTAGTATTGACAACCTTCTGGTTTTGGATGGATCAGAAGAAGCACTTTTGTGTCGTTCTAGTAAACAACCTCTTAGTGTGAGTTTGGATGCAACTGGCCTTCAATTCTATGCTGGTGGAGTCTATGGTGGTGAGAACTGCAAAAAAGATTCAAGGAATGCAAATCTTGTTGGTCTAATCGTGGGTTATGATTCGGTGAATGGTGAAGACTATTGGATTGTGAAAAACTCATGGGGAAAAGATTGGGGAGAGAAAGGTTACTTGTTTATCAAAAGGAATGTTATTGAAGATTGGCCTTATGGTGTATGTGCAATCAATGCTGCGGTTGGTTACCCAATCAAAACAGCTTTATCTTCAGCCATGTAG
Protein sequence

>Msa0565000

MMISHITKFILSFLILISITCLSFALSSEYSISNHGKLDKFSSDEEVFELFQLWKKEHGRDYANSEEENAKRFEIFKSNFKYINEMNAKRKSQTQHRLSLNKFADMSPEEFSKTYLPKIEMQIPSNRDNAKLRDDDDCENLPTSVDWREKGAVTEVRDQGNCQSHWAFSVTGAIEGLNKIVTGNLINLSAQEIMDCDPASKGCAGGFYFNAFGWVIENGGIDTEANYPYLAKNGTCKENANKVVSIDNLLVLDGSEEALLCRSSKQPLSVSLDATGLQFYAGGVYGGENCKKDSRNANLVGLIVGYDSVNGEDYWIVKNSWGKDWGEKGYLFIKRNVIEDWPYGVCAINAAVGYPIKTALSSAM*