AlfalfaGEDB | Msa0869680

M. sativa cultivar zhongmu-4 / Msa0869680

KEGG: K10529
GO: GO:0000302 GO:0001101 GO:0001516 GO:0001561 GO:0001676 GO:0002376 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004601 GO:0004666 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005811 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006690 GO:0006692 GO:0006693 GO:0006805 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008219 GO:0008610 GO:0009056 GO:0009058 GO:0009062 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009814 GO:0009987 GO:0010033 GO:0010035 GO:0012505 GO:0012511 GO:0014070 GO:0016020 GO:0016042 GO:0016053 GO:0016054 GO:0016209 GO:0016491 GO:0016684 GO:0016701 GO:0016702 GO:0016705 GO:0019369 GO:0019371 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031984 GO:0032501 GO:0032787 GO:0032870 GO:0033554 GO:0033559 GO:0033993 GO:0034440 GO:0034599 GO:0034614 GO:0035690 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046394 GO:0046395 GO:0046456 GO:0046457 GO:0046677 GO:0050832 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071236 GO:0071241 GO:0071310 GO:0071407 GO:0071446 GO:0071466 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0072329 GO:0072330 GO:0097237 GO:0097305 GO:0097366 GO:0098542 GO:0098754 GO:0098827 GO:0098869 GO:1901568 GO:1901570 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902609 GO:1990748
PFAM: PF03098.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869680	XP_024641666.1	79.969	644	35	5	1	551	1	643	0.0	1015

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869680	sp\|Q5GQ66\|PIOX_PEA	66.149	644	124	6	1	551	1	643	0.0	842

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869680	A0A072U5H0	78.642	604	35	5	41	551	19	621	0.0	934

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081520	Msa0869680	0.808134	3.596017e-50	-8.615850e-47
Msa0197420	Msa0869680	0.823062	1.695374e-53	-8.615850e-47
Msa0206840	Msa0869680	0.817953	2.523571e-52	-8.615850e-47
Msa0239190	Msa0869680	0.803777	2.965292e-49	-8.615850e-47
Msa0316810	Msa0869680	0.810082	1.375810e-50	-8.615850e-47
Msa0322900	Msa0869680	0.800783	1.225423e-48	-8.615850e-47
Msa0405710	Msa0869680	0.810391	1.179892e-50	-8.615850e-47
Msa0475790	Msa0869680	0.813465	2.525001e-51	-8.615850e-47
Msa0565000	Msa0869680	0.815256	1.014736e-51	-8.615850e-47
Msa0638480	Msa0869680	0.807819	4.195080e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0869680	MtrunA17_Chr6g0451291	78.773	603	34	5	42	551	14	615	933
Msa0869680	MtrunA17_Chr6g0451281	68.896	643	107	5	1	551	1	642	900
Msa0869680	MtrunA17_Chr6g0451261	69.193	607	90	6	41	551	309	914	830
Msa0869680	MtrunA17_Chr8g0392711	52.666	619	192	8	22	548	12	621	607

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0869680	AT3G01420.1	62.893	636	143	5	9	551	4	639	788
Msa0869680	AT1G73680.1	57.443	618	173	4	21	548	11	628	697
Msa0869680	AT1G73680.2	56.300	627	175	6	21	548	11	637	682
Msa0869680	AT1G73680.3	57.834	517	138	3	112	548	3	519	580
Msa0869680	AT1G73680.4	57.806	474	120	3	155	548	1	474	531

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Find 191 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGACACTTTGCTTGC+AGG	0.303248	6_1:+3955100	Msa0869680:CDS
AAACACAAAGGAAGAAGATA+AGG	0.532191	6_1:-3957421	None:intergenic
AAAGTATTGGAAGAGGTATA+TGG	0.283665	6_1:+3956359	Msa0869680:CDS
AAAGTTGTGTCGTGGTAATA+AGG	0.336139	6_1:+3958173	Msa0869680:three_prime_UTR
AACGAAAGGGCTGGAAGTCA+AGG	0.505523	6_1:+3953639	Msa0869680:CDS
AACTCGGCAAAATCCATCAC+AGG	0.588313	6_1:-3957915	None:intergenic
AAGAAATTCAAGGACACATT+TGG	0.278325	6_1:+3955480	Msa0869680:CDS
AAGACAAAGGAAATTCCAAC+GGG	0.522014	6_1:+3954306	Msa0869680:CDS
AAGATCTGATCATGTGGACA+TGG	0.657118	6_1:+3956115	Msa0869680:CDS
AAGGACACATTTGGGCATGT+TGG	0.534091	6_1:+3955489	Msa0869680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTATCAAGCAAAATCATG+TGG	+	chr6_1:3952456-3952475	Msa0869680:exon	30.0%
TGTTTATTATTGAGGGAACA+AGG	-	chr6_1:3952636-3952655	None:intergenic	30.0%
GTAGATAAACTCAAACAAGT+TGG	-	chr6_1:3952678-3952697	None:intergenic	30.0%
AACAACTTATTTACGGCTTA+CGG	-	chr6_1:3952922-3952941	None:intergenic	30.0%
ATTCTCTCTAGTACCAATTT+AGG	-	chr6_1:3952999-3953018	None:intergenic	30.0%
GATTAATTACACTTGTAGTG+TGG	-	chr6_1:3953314-3953333	None:intergenic	30.0%
ACATGATTGGATAGATCATT+TGG	+	chr6_1:3954024-3954043	Msa0869680:CDS	30.0%
CAACACGAACATTAAAATGT+TGG	-	chr6_1:3954179-3954198	None:intergenic	30.0%
TGCCATAGTTTCAAATCAAT+AGG	-	chr6_1:3954521-3954540	None:intergenic	30.0%
GCATGCAACTATATGATAAA+AGG	+	chr6_1:3954659-3954678	Msa0869680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	3952426	3958199	3952426	ID=Msa0869680;Name=Msa0869680
chr6_1	mRNA	3952426	3958199	3952426	ID=Msa0869680-mRNA-1;Parent=Msa0869680;Name=Msa0869680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=47\|0.77\|0.6\|1\|0.66\|0.5\|10\|1142\|551
chr6_1	exon	3952426	3952595	3952426	ID=Msa0869680-mRNA-1:exon:1153;Parent=Msa0869680-mRNA-1
chr6_1	exon	3953477	3953707	3953477	ID=Msa0869680-mRNA-1:exon:1154;Parent=Msa0869680-mRNA-1
chr6_1	exon	3953911	3954060	3953911	ID=Msa0869680-mRNA-1:exon:1155;Parent=Msa0869680-mRNA-1
chr6_1	exon	3954243	3954327	3954243	ID=Msa0869680-mRNA-1:exon:1156;Parent=Msa0869680-mRNA-1
chr6_1	exon	3954713	3954894	3954713	ID=Msa0869680-mRNA-1:exon:1157;Parent=Msa0869680-mRNA-1
chr6_1	exon	3954992	3955137	3954992	ID=Msa0869680-mRNA-1:exon:1158;Parent=Msa0869680-mRNA-1
chr6_1	exon	3955464	3955590	3955464	ID=Msa0869680-mRNA-1:exon:1159;Parent=Msa0869680-mRNA-1
chr6_1	exon	3956008	3956149	3956008	ID=Msa0869680-mRNA-1:exon:1160;Parent=Msa0869680-mRNA-1
chr6_1	exon	3956249	3956492	3956249	ID=Msa0869680-mRNA-1:exon:1161;Parent=Msa0869680-mRNA-1
chr6_1	exon	3956832	3958199	3956832	ID=Msa0869680-mRNA-1:exon:1162;Parent=Msa0869680-mRNA-1
chr6_1	five_prime_UTR	3952426	3952472	3952426	ID=Msa0869680-mRNA-1:five_prime_utr;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3952473	3952595	3952473	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3953477	3953707	3953477	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3953911	3954060	3953911	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3954243	3954327	3954243	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3954713	3954894	3954713	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3954992	3955137	3954992	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3955464	3955590	3955464	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3956008	3956149	3956008	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3956249	3956492	3956249	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	CDS	3956832	3957057	3956832	ID=Msa0869680-mRNA-1:cds;Parent=Msa0869680-mRNA-1
chr6_1	three_prime_UTR	3957058	3958199	3957058	ID=Msa0869680-mRNA-1:three_prime_utr;Parent=Msa0869680-mRNA-1

Gene Sequence

>Msa0869680

ATGTGGTCTTTAGTAACAGATCCCATTAGAAATCTTGTTACAATAGTTATACAACATTCCTTCCATAAAGATTTTCATGAAGTAGTGAAGAAAATGTCCATCATAGATGCTTTTCTTTTCTTTATTATTCACTCCATTGACAAGCTTGGAATATGGCACCGTTTACCTGTTCTCTTGGGCCTATTGTATTTGGCCATTAGACGCCATCTTCACCAACAATACAACCTCTTCAACCCTAATGATTATCCATATAGAACTGCTGATGGAAAATATAATGACCCTTTCAACGAAAGGGCTGGAAGTCAAGGGTCTTTCATTGGAAGAAATATTCTTCCTGTGGATCAGAAGGACAAGTTGTTGAAGCCAGACCCTATGGTGGTGGCCACAAAACTGTTGGAGAGAAAAACGTTCCAGGACAATGAAAAACAATTCAATGTGTTAGCAGCAGCTTGGATTCAATTTATGATACATGATTGGATAGATCATTTGGAGGACACTAATCAGATTGAACTCACTGCACCACGTGAAGTTGCAAGCCAATGTCCACTAAAATCATTCAAGTTCTTGAAGACAAAGGAAATTCCAACGGAAGTTTTGAACAGTGTGAGGAGTTTCAAAGATGGGAAGTTAAAAATATCAAAGGATGGTACCCTAATCCAAAATGAAGATGGAGTAGCAATTTCAGGTGATGTTCGTAATAGTTGGGCTGGTGTCTCAACTTTGCAGGCTCTTTTTATTCAAGAACACAATGCTGTTTGTGATGCTCTCAAGATGGAATATCCGGACTTAGAAGATGAAGATCTTTACCGCCATGCTAGATTGGTGACTTCAGCTGTGATTGCAAAGATTCATACCATAGATTGGACCGTGGAGCTCTTGAAAACTGACACTTTGCTTGCAGGCATGCGTGGAAATTGGTATGGATTATTGGGGAAGAAATTCAAGGACACATTTGGGCATGTTGGTGACGCTATCTTAGGTGGATTGGTGGGCATGAATAAACCAGATAATCATGGTGTTCCATACTCTCTAACTGAAGAATTTGGCATTAGTGTAGTGTCTATGGGTCATCAAACTTCTGGTGCCCTAACACTTGGAAACTATCCATCATTTCTCAGAGACCTTGTACCACAGAACATAGATGGCACAGAAAGATCTGATCATGTGGACATGGCTGCTCTTGAAATTTATAGGGATAGAGAGAGGAAAGTAGCCAGGTATAACCAATTCAGAAGAGCATTATTATTGATACCTATTTCAAAATGGGAAGATTTGACAGATGATAAGGAAGTAATCAAAGTATTGGAAGAGGTATATGGGAATGATGTTGAGGAGCTTGATACACTAGTAGGTCTCATGGCAGAGAAGAAGATAAAGGGTTTTGCAATTAGTGAGACATCTTTTGTAATATTCCTTGTCATGGCATCTAGGAGGCTAGAGGCTGATAGGTTTTTCACAAGCAACTTCAATGAGGAGACATACACCAAAAAGGGTTTGGAATGGGTGAACACAACTGAGAGCTTAAAGGAAGTGATTGATCGTCACCATCCAGGAATGACAGAAAAGTGGTTGAATGCTTCAAGTGCTTTCTCTGTTTGGGATGCACCCCCAAACAAAGACAATCCAATTCCACTTTATCTTCGTATTCCTAGTTAA

Protein sequence

>Msa0869680

MWSLVTDPIRNLVTIVIQHSFHKDFHEVVKKMSIIDAFLFFIIHSIDKLGIWHRLPVLLGLLYLAIRRHLHQQYNLFNPNDYPYRTADGKYNDPFNERAGSQGSFIGRNILPVDQKDKLLKPDPMVVATKLLERKTFQDNEKQFNVLAAAWIQFMIHDWIDHLEDTNQIELTAPREVASQCPLKSFKFLKTKEIPTEVLNSVRSFKDGKLKISKDGTLIQNEDGVAISGDVRNSWAGVSTLQALFIQEHNAVCDALKMEYPDLEDEDLYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRGNWYGLLGKKFKDTFGHVGDAILGGLVGMNKPDNHGVPYSLTEEFGISVVSMGHQTSGALTLGNYPSFLRDLVPQNIDGTERSDHVDMAALEIYRDRERKVARYNQFRRALLLIPISKWEDLTDDKEVIKVLEEVYGNDVEELDTLVGLMAEKKIKGFAISETSFVIFLVMASRRLEADRFFTSNFNEETYTKKGLEWVNTTESLKEVIDRHHPGMTEKWLNASSAFSVWDAPPNKDNPIPLYLRIPS*