AlfalfaGEDB | Msa0657180

M. sativa cultivar zhongmu-4 / Msa0657180

KEGG: -
GO: -
PFAM: PF08246.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657180	XP_013456193.2	94.780	364	19	0	1	364	17	380	0.0	727

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657180	sp\|P22895\|P34_SOYBN	49.851	335	145	11	38	357	31	357	3.98e-99	301

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657180	A0A396GND9	94.780	364	19	0	1	364	17	380	0.0	727

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081520	Msa0657180	0.833041	6.696070e-56	-8.615850e-47
Msa0094780	Msa0657180	0.803156	3.988572e-49	-8.615850e-47
Msa0106620	Msa0657180	0.806644	7.440815e-50	-8.615850e-47
Msa0173890	Msa0657180	0.814925	1.201533e-51	-8.615850e-47
Msa0225860	Msa0657180	0.818436	1.961952e-52	-8.615850e-47
Msa0255090	Msa0657180	0.803215	3.878013e-49	-8.615850e-47
Msa0271880	Msa0657180	0.800028	1.746248e-48	-8.615850e-47
Msa0277180	Msa0657180	0.803674	3.113888e-49	-8.615850e-47
Msa0287740	Msa0657180	0.803258	3.798024e-49	-8.615850e-47
Msa0298470	Msa0657180	0.812524	4.059065e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657180	MtrunA17_Chr8g0379151	94.780	364	19	0	1	364	17	380	0.0	727
Msa0657180	MtrunA17_Chr2g0283741	46.301	365	181	8	2	357	1	359	4.36e-107	318
Msa0657180	MtrunA17_Chr2g0283901	50.145	345	161	8	18	357	18	356	7.76e-107	322
Msa0657180	MtrunA17_Chr3g0144281	41.292	356	181	14	14	357	9	348	4.81e-78	243
Msa0657180	MtrunA17_Chr3g0134231	41.484	364	186	13	10	357	10	362	6.74e-77	244
Msa0657180	MtrunA17_Chr4g0053311	39.678	373	185	12	6	363	1	348	1.33e-76	240
Msa0657180	MtrunA17_Chr3g0142071	42.500	320	166	9	49	359	48	358	1.35e-75	240
Msa0657180	MtrunA17_Chr3g0116551	40.730	356	186	13	15	359	6	347	3.20e-74	234
Msa0657180	MtrunA17_Chr4g0040851	39.669	363	194	14	1	356	15	359	3.51e-74	234
Msa0657180	MtrunA17_Chr1g0208261	42.308	338	171	13	32	357	71	396	1.30e-73	237

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657180	AT5G43060.1	42.222	360	179	12	13	357	9	354	6.58e-83	260
Msa0657180	AT4G23520.1	40.385	364	189	13	10	363	11	356	3.31e-81	252
Msa0657180	AT4G35350.1	41.111	360	192	12	6	358	8	354	1.25e-79	248
Msa0657180	AT1G20850.1	44.543	339	166	13	29	358	30	355	1.02e-78	246
Msa0657180	AT1G09850.1	44.062	320	163	9	45	358	26	335	1.55e-78	248
Msa0657180	AT1G47128.1	40.548	365	190	13	1	357	8	353	5.85e-77	244
Msa0657180	AT4G11310.1	39.178	365	192	13	13	362	9	358	3.89e-75	237
Msa0657180	AT5G50260.1	41.341	358	183	14	13	359	4	345	1.58e-74	235
Msa0657180	AT4G11320.2	37.432	366	206	11	9	362	11	365	6.11e-73	231
Msa0657180	AT4G11320.1	37.432	366	206	11	9	362	11	365	6.11e-73	231

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Find 104 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATGGGGAAAAGAT+TGG	0.442756	4_3:+66728220	Msa0657180:CDS
AAAACTTGTCCAACTTGCCA+TGG	0.594424	4_3:-66726588	None:intergenic
AAACTCATGGGGAAAAGATT+GGG	0.397399	4_3:+66728221	Msa0657180:CDS
AAAGACATGTAATGGAAATG+AGG	0.531576	4_3:-66726531	None:intergenic
AAAGGAATGTTATTGAAGAT+TGG	0.377330	4_3:+66728268	Msa0657180:CDS
AAATCTTACGACAATTTCCT+TGG	0.443422	4_3:-66726960	None:intergenic
AAATCTTGTTGGTCTAATCG+TGG	0.581439	4_3:+66728158	Msa0657180:CDS
AACTCATGGGGAAAAGATTG+GGG	0.629466	4_3:+66728222	Msa0657180:CDS
AAGACCAAGAGATCAAACAT+TGG	0.686288	4_3:+66726450	Msa0657180:five_prime_UTR
AAGCTTCGCATTGTCCCGAT+TGG	0.506284	4_3:-66726860	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTTACGACAATTTCCT+TGG	-	chr4_3:66726963-66726982	None:intergenic	30.0%
AGGACTAAACAAAATAGTCA+CGG	+	chr4_3:66727304-66727323	Msa0657180:CDS	30.0%
TTTACTTTAATGCATTTGGC+TGG	+	chr4_3:66727399-66727418	Msa0657180:CDS	30.0%
TTACTTTAATGCATTTGGCT+GGG	+	chr4_3:66727400-66727419	Msa0657180:CDS	30.0%
ATCTTTCAAAAGGTTGAATC+TGG	+	chr4_3:66727943-66727962	Msa0657180:intron	30.0%
AGAACTGCAAAAAAGATTCA+AGG	+	chr4_3:66728130-66728149	Msa0657180:CDS	30.0%
ATTGGATTGTGAAAAACTCA+TGG	+	chr4_3:66728208-66728227	Msa0657180:CDS	30.0%
TTGGATTGTGAAAAACTCAT+GGG	+	chr4_3:66728209-66728228	Msa0657180:CDS	30.0%
GTACTAGTACATACATAAAG+GGG	-	chr4_3:66728497-66728516	None:intergenic	30.0%
CTTAGAAAAGGGAAACTAAA+TGG	-	chr4_3:66728573-66728592	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	66726444	66728724	66726444	ID=Msa0657180;Name=Msa0657180
chr4_3	mRNA	66726444	66728724	66726444	ID=Msa0657180-mRNA-1;Parent=Msa0657180;Name=Msa0657180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43\|1\|1\|1\|1\|1\|4\|362\|364
chr4_3	exon	66726444	66726973	66726444	ID=Msa0657180-mRNA-1:exon:19200;Parent=Msa0657180-mRNA-1
chr4_3	exon	66727267	66727490	66727267	ID=Msa0657180-mRNA-1:exon:19201;Parent=Msa0657180-mRNA-1
chr4_3	exon	66727615	66727749	66727615	ID=Msa0657180-mRNA-1:exon:19202;Parent=Msa0657180-mRNA-1
chr4_3	exon	66728114	66728724	66728114	ID=Msa0657180-mRNA-1:exon:19203;Parent=Msa0657180-mRNA-1
chr4_3	five_prime_UTR	66726444	66726486	66726444	ID=Msa0657180-mRNA-1:five_prime_utr;Parent=Msa0657180-mRNA-1
chr4_3	CDS	66726487	66726973	66726487	ID=Msa0657180-mRNA-1:cds;Parent=Msa0657180-mRNA-1
chr4_3	CDS	66727267	66727490	66727267	ID=Msa0657180-mRNA-1:cds;Parent=Msa0657180-mRNA-1
chr4_3	CDS	66727615	66727749	66727615	ID=Msa0657180-mRNA-1:cds;Parent=Msa0657180-mRNA-1
chr4_3	CDS	66728114	66728362	66728114	ID=Msa0657180-mRNA-1:cds;Parent=Msa0657180-mRNA-1
chr4_3	three_prime_UTR	66728363	66728724	66728363	ID=Msa0657180-mRNA-1:three_prime_utr;Parent=Msa0657180-mRNA-1

Gene Sequence

>Msa0657180

ATGATGATATACCACATCACAAAGTTCATTCTGTCTTTTTTAATCCTCATTTCCATTACATGTCTTTCATTTGCCTTGTCTAGTGAGTACTCAATTTCTAGCCATGGCAAGTTGGACAAGTTTTCCTCTGATGAAGAAGTGTTTGAACTCTTCCAATTGTGGAAGAAGGAGCACGGGCGAGACTATGCCAATTCAGAGGAGGAAAATGCCAAGAGATTTGAGATATTTAAAACCAATTTTAAGTATATCAATGAGATGAATGCAAAGAGAAAATCGCAAACACAACATCGTTTGAGTCTCAACAAGTTTGCTGATATGAGTCCTGAGGAGTTTAGTAAAACCTACTTACCAAAGATAGAGATGCAGATTCCCTCCAATCGGGACAATGCGAAGCTTAGAGATGATGATGATTGTGAAAACCTTCCCACTTCTGTAGATTGGAGGGAAAAAGGAGCTGTGACTGAAGTTAGGGACCAAGGAAATTGTCAGAGCCATTGGGCATTCTCAGTCACTGGGGCAATTGAAGGACTAAACAAAATAGTCACGGGAAATCTTATCAACCTATCAGCACAAGAAATTATGGACTGTGACCCTGCTAGTAAGGGTTGTGCTGGAGGTTTTTACTTTAATGCATTTGGCTGGGTTATTGAAAATGGTGGGATTGATACAGAAGCTAACTATCCTTATTTAGCTAAAAATGGTACTTGCAAGGAAAATGCAAACAAGGTTGTTAGTATTGACAACCTTCTGGTTTTGGATGGATCAGAAGAAGCACTTTTGTGTCGTTCTAGTAAACAACCTCTTAGTGTGAGTTTGGATGCAACTGGCCTTCAATTCTATGCTGGTGGAGTCTATGGTGGTGAGAACTGCAAAAAAGATTCAAGGAATGCAAATCTTGTTGGTCTAATCGTGGGTTATGATTCGGTGAATGGTGAAGACTATTGGATTGTGAAAAACTCATGGGGAAAAGATTGGGGAGAGAAAGGTTACTTGTTTATCAAAAGGAATGTTATTGAAGATTGGCCTTATGGTGTATGTGCAATCAATGCTGCGGTTGGTTACCCAATCAAAACAGCTTTATCTTCAGCCATTTAG

Protein sequence

>Msa0657180

MMIYHITKFILSFLILISITCLSFALSSEYSISSHGKLDKFSSDEEVFELFQLWKKEHGRDYANSEEENAKRFEIFKTNFKYINEMNAKRKSQTQHRLSLNKFADMSPEEFSKTYLPKIEMQIPSNRDNAKLRDDDDCENLPTSVDWREKGAVTEVRDQGNCQSHWAFSVTGAIEGLNKIVTGNLINLSAQEIMDCDPASKGCAGGFYFNAFGWVIENGGIDTEANYPYLAKNGTCKENANKVVSIDNLLVLDGSEEALLCRSSKQPLSVSLDATGLQFYAGGVYGGENCKKDSRNANLVGLIVGYDSVNGEDYWIVKNSWGKDWGEKGYLFIKRNVIEDWPYGVCAINAAVGYPIKTALSSAI*