AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657180 MtrunA17_Chr8g0379151 94.780 364 19 0 1 364 17 380 0.0 727
Msa0657180 MtrunA17_Chr2g0283741 46.301 365 181 8 2 357 1 359 4.36e-107 318
Msa0657180 MtrunA17_Chr2g0283901 50.145 345 161 8 18 357 18 356 7.76e-107 322
Msa0657180 MtrunA17_Chr3g0144281 41.292 356 181 14 14 357 9 348 4.81e-78 243
Msa0657180 MtrunA17_Chr3g0134231 41.484 364 186 13 10 357 10 362 6.74e-77 244
Msa0657180 MtrunA17_Chr4g0053311 39.678 373 185 12 6 363 1 348 1.33e-76 240
Msa0657180 MtrunA17_Chr3g0142071 42.500 320 166 9 49 359 48 358 1.35e-75 240
Msa0657180 MtrunA17_Chr3g0116551 40.730 356 186 13 15 359 6 347 3.20e-74 234
Msa0657180 MtrunA17_Chr4g0040851 39.669 363 194 14 1 356 15 359 3.51e-74 234
Msa0657180 MtrunA17_Chr1g0208261 42.308 338 171 13 32 357 71 396 1.30e-73 237
Msa0657180 MtrunA17_Chr2g0283751 45.055 273 138 7 9 274 11 278 1.42e-70 222
Msa0657180 MtrunA17_Chr2g0325121 41.401 314 162 11 51 357 39 337 3.30e-70 223
Msa0657180 MtrunA17_Chr4g0041481 40.063 317 164 11 49 355 38 338 1.09e-68 219
Msa0657180 MtrunA17_Chr4g0024411 38.994 318 179 8 45 355 32 341 2.39e-68 218
Msa0657180 MtrunA17_Chr1g0153011 38.268 358 186 11 11 357 10 343 2.90e-68 221
Msa0657180 MtrunA17_Chr4g0041521 40.379 317 163 11 49 355 38 338 3.41e-68 218
Msa0657180 MtrunA17_Chr7g0248391 40.575 313 166 9 49 356 40 337 3.34e-67 215
Msa0657180 MtrunA17_Chr4g0058081 38.889 360 187 15 14 359 6 346 8.99e-67 214
Msa0657180 MtrunA17_Chr5g0405751 36.188 362 196 10 3 355 7 342 1.04e-66 214
Msa0657180 MtrunA17_Chr4g0040881 36.957 322 187 8 41 355 31 343 3.57e-64 207
Msa0657180 MtrunA17_Chr4g0041061 37.304 319 184 8 44 355 34 343 3.76e-64 207
Msa0657180 MtrunA17_Chr4g0041471 36.512 367 182 14 9 356 7 341 8.89e-64 206
Msa0657180 MtrunA17_Chr4g0060251 37.695 321 179 10 45 355 34 343 1.03e-63 206
Msa0657180 MtrunA17_Chr7g0248811 39.423 312 170 11 49 355 37 334 1.80e-62 203
Msa0657180 MtrunA17_Chr4g0041081 36.760 321 183 9 44 355 34 343 7.97e-62 201
Msa0657180 MtrunA17_Chr2g0315491 34.595 370 195 11 2 355 1 339 1.01e-61 201
Msa0657180 MtrunA17_Chr2g0319991 37.963 324 178 12 46 356 30 343 1.10e-60 198
Msa0657180 MtrunA17_Chr1g0155781 35.514 321 173 12 51 352 51 356 7.75e-56 186
Msa0657180 MtrunA17_Chr4g0035551 33.602 372 201 13 5 352 3 352 4.21e-55 184
Msa0657180 MtrunA17_Chr1g0199131 32.620 374 212 11 6 352 2 362 2.44e-54 183
Msa0657180 MtrunA17_Chr2g0311381 35.514 321 169 12 51 348 36 341 2.13e-53 180
Msa0657180 MtrunA17_Chr2g0311471 37.539 317 170 11 54 354 39 343 5.05e-53 179
Msa0657180 MtrunA17_Chr0c27g0493921 31.844 358 222 8 7 356 5 348 4.91e-49 168
Msa0657180 MtrunA17_Chr4g0070441 33.333 333 206 7 7 331 5 329 3.31e-48 166
Msa0657180 MtrunA17_Chr2g0311391 32.564 390 192 16 14 355 4 370 7.29e-48 166
Msa0657180 MtrunA17_Chr2g0283671 42.342 222 118 6 139 356 12 227 3.06e-45 155
Msa0657180 MtrunA17_Chr4g0036731 31.519 349 189 11 14 352 8 316 7.68e-42 149
Msa0657180 MtrunA17_Chr4g0036281 33.333 309 163 10 51 352 48 320 5.91e-41 146
Msa0657180 MtrunA17_Chr4g0037291 31.073 354 188 12 14 352 49 361 9.10e-41 147
Msa0657180 MtrunA17_Chr1g0156161 38.009 221 126 6 139 354 47 261 2.18e-40 143
Msa0657180 MtrunA17_Chr1g0156771 48.077 104 51 2 139 239 53 156 1.21e-26 103
Msa0657180 MtrunA17_Chr2g0283661 26.496 351 173 11 8 355 2 270 1.88e-26 106
Msa0657180 MtrunA17_Chr7g0248421 40.288 139 80 2 166 301 58 196 5.81e-25 100
Msa0657180 MtrunA17_Chr2g0311091 36.424 151 80 5 54 191 37 184 2.98e-22 92.8
Msa0657180 MtrunA17_Chr7g0248371 44.954 109 50 6 250 356 31 131 2.81e-18 80.9
Msa0657180 MtrunA17_Chr7g0271031 24.199 281 171 10 102 352 110 378 1.67e-12 68.2
Msa0657180 MtrunA17_Chr8g0379671 30.709 127 79 4 182 306 23 142 7.30e-12 63.2
Msa0657180 MtrunA17_Chr7g0248661 44.444 81 38 4 277 356 2 76 8.43e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657180 AT5G43060.1 42.222 360 179 12 13 357 9 354 6.58e-83 260
Msa0657180 AT4G23520.1 40.385 364 189 13 10 363 11 356 3.31e-81 252
Msa0657180 AT4G35350.1 41.111 360 192 12 6 358 8 354 1.25e-79 248
Msa0657180 AT1G20850.1 44.543 339 166 13 29 358 30 355 1.02e-78 246
Msa0657180 AT1G09850.1 44.062 320 163 9 45 358 26 335 1.55e-78 248
Msa0657180 AT1G47128.1 40.548 365 190 13 1 357 8 353 5.85e-77 244
Msa0657180 AT4G11310.1 39.178 365 192 13 13 362 9 358 3.89e-75 237
Msa0657180 AT5G50260.1 41.341 358 183 14 13 359 4 345 1.58e-74 235
Msa0657180 AT4G11320.2 37.432 366 206 11 9 362 11 365 6.11e-73 231
Msa0657180 AT4G11320.1 37.432 366 206 11 9 362 11 365 6.11e-73 231
Msa0657180 AT4G36880.1 40.000 350 186 12 25 357 20 362 4.47e-72 229
Msa0657180 AT3G48340.1 38.315 368 189 12 11 362 4 349 8.19e-71 226
Msa0657180 AT3G19400.1 40.483 331 176 13 43 363 36 355 7.23e-70 223
Msa0657180 AT3G19390.1 37.940 369 201 16 2 361 1 350 1.44e-68 223
Msa0657180 AT1G06260.1 37.394 353 197 10 12 357 8 343 3.59e-67 216
Msa0657180 AT1G29090.1 39.335 361 182 14 13 356 14 354 2.36e-66 214
Msa0657180 AT2G34080.1 36.517 356 205 12 10 356 1 344 3.95e-66 213
Msa0657180 AT3G48350.1 37.430 358 197 14 11 357 3 344 6.85e-66 213
Msa0657180 AT3G43960.1 40.549 328 177 12 46 364 36 354 1.54e-65 212
Msa0657180 AT5G45890.1 35.598 368 200 14 1 355 1 344 9.41e-65 209
Msa0657180 AT1G29080.1 36.134 357 205 12 9 356 3 345 3.19e-64 208
Msa0657180 AT3G49340.1 35.942 345 198 11 22 356 9 340 5.06e-64 207
Msa0657180 AT2G27420.1 37.363 364 194 15 10 356 1 347 3.10e-61 200
Msa0657180 AT4G35350.2 39.437 284 158 9 6 282 8 284 7.45e-57 187
Msa0657180 AT1G29110.1 33.705 359 189 13 15 356 7 333 1.16e-55 186
Msa0657180 AT3G54940.2 35.455 330 182 9 51 362 51 367 9.77e-55 184
Msa0657180 AT4G39090.1 34.535 333 182 11 51 363 51 367 2.63e-54 183
Msa0657180 AT5G60360.1 35.256 312 182 8 51 356 59 356 1.04e-52 178
Msa0657180 AT2G21430.1 36.304 303 163 11 51 333 48 340 8.58e-52 176
Msa0657180 AT5G60360.2 36.934 287 167 7 51 331 59 337 1.42e-51 176
Msa0657180 AT5G60360.3 36.934 287 167 7 51 331 59 337 2.04e-51 175
Msa0657180 AT4G16190.1 31.818 374 204 14 13 352 6 362 2.60e-50 172
Msa0657180 AT3G45310.1 33.333 312 188 9 51 356 59 356 4.22e-48 166
Msa0657180 AT3G48350.2 34.915 295 170 11 11 294 3 286 1.33e-47 163
Msa0657180 AT3G19400.2 40.496 242 131 8 46 279 39 275 1.88e-47 163
Msa0657180 AT3G45310.2 35.192 287 172 8 51 331 59 337 1.92e-47 165
Msa0657180 AT3G54940.3 35.644 202 117 3 51 243 51 248 5.11e-35 130
Msa0657180 AT4G01610.1 27.181 298 169 13 81 342 49 334 2.31e-12 67.8

Find 104 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAATTTGCAACAAATTT+TGG 0.101082 4_3:-66728703 None:intergenic
CAAAATTTGTTGCAAATTAT+TGG 0.108351 4_3:+66728704 Msa0657180:three_prime_UTR
CTCATTGATATACTTAAAAT+TGG 0.205591 4_3:-66726719 None:intergenic
TGTAGTGCTAGCATGGAATT+TGG 0.210591 4_3:+66728446 Msa0657180:three_prime_UTR
TATTGACAACCTTCTGGTTT+TGG 0.238326 4_3:+66727638 Msa0657180:CDS
CCTATCAGCACAAGAAATTA+TGG 0.278118 4_3:+66727340 Msa0657180:CDS
CGGTGAATGGTGAAGACTAT+TGG 0.304070 4_3:+66728190 Msa0657180:CDS
TGCTCTAACCAACCACTAAA+TGG 0.307125 4_3:-66728355 None:intergenic
GTTATTGAAGATTGGCCTTA+TGG 0.314718 4_3:+66728276 Msa0657180:CDS
CTTAGAAAAGGGAAACTAAA+TGG 0.315033 4_3:-66728570 None:intergenic
TTTACTTTAATGCATTTGGC+TGG 0.318534 4_3:+66727399 Msa0657180:CDS
TTTGGCTGGGTTATTGAAAA+TGG 0.328155 4_3:+66727413 Msa0657180:CDS
GTTACCAATGTTTGATCTCT+TGG 0.334563 4_3:-66726454 None:intergenic
CCATAATTTCTTGTGCTGAT+AGG 0.338269 4_3:-66727340 None:intergenic
CGTGCTCCTTCTTCCACAAT+TGG 0.339247 4_3:-66726639 None:intergenic
ACAACCTCTTAGTGTGAGTT+TGG 0.347332 4_3:+66727698 Msa0657180:CDS
CATCTCTATCTTTGGTAAGT+AGG 0.351412 4_3:-66726827 None:intergenic
TGTTAGTATTGACAACCTTC+TGG 0.352494 4_3:+66727632 Msa0657180:CDS
GTAGTGCTAGCATGGAATTT+GGG 0.355855 4_3:+66728447 Msa0657180:three_prime_UTR
ACCTTCCCACTTCTGTAGAT+TGG 0.361626 4_3:+66726905 Msa0657180:CDS
AAGGAGCTGTGACTGAAGTT+AGG 0.364375 4_3:+66726935 Msa0657180:CDS
CTTTATCTTCAGCCATTTAG+TGG 0.368103 4_3:+66728343 Msa0657180:CDS
CATTGGGCATTCTCAGTCAC+TGG 0.368149 4_3:+66727272 Msa0657180:CDS
AATGTTTGATCTCTTGGTCT+TGG 0.369653 4_3:-66726448 None:intergenic
AAAGGAATGTTATTGAAGAT+TGG 0.377330 4_3:+66728268 Msa0657180:CDS
TTTAAATATCTCAAATCTCT+TGG 0.377666 4_3:-66726695 None:intergenic
TGACTAAAATAGGGAGTCTA+TGG 0.386085 4_3:+66728102 Msa0657180:intron
TCTCATAATATATATAATAA+TGG 0.390953 4_3:+66728521 Msa0657180:three_prime_UTR
TCTGTAGATTGGAGGGAAAA+AGG 0.392044 4_3:+66726916 Msa0657180:CDS
AAACTCATGGGGAAAAGATT+GGG 0.397399 4_3:+66728221 Msa0657180:CDS
AGTACTAGTACATACATAAA+GGG 0.400009 4_3:-66728495 None:intergenic
TAGTACTAGTACATACATAA+AGG 0.400483 4_3:-66728496 None:intergenic
TCCATGCTAGCACTACAATA+TGG 0.402696 4_3:-66728440 None:intergenic
GGAATCTGCATCTCTATCTT+TGG 0.403742 4_3:-66726835 None:intergenic
AAGGTTACTTGTTTATCAAA+AGG 0.408095 4_3:+66728250 Msa0657180:CDS
GGACTGTGACCCTGCTAGTA+AGG 0.414218 4_3:+66727361 Msa0657180:CDS
GGCAAATGAAAGACATGTAA+TGG 0.429471 4_3:-66726539 None:intergenic
TCAGTCACTGGGGCAATTGA+AGG 0.431508 4_3:+66727284 Msa0657180:CDS
ATCTTCAGCCATTTAGTGGT+TGG 0.436614 4_3:+66728347 Msa0657180:exon
TCAAGGAATGCAAATCTTGT+TGG 0.438289 4_3:+66728147 Msa0657180:CDS
AAAACTCATGGGGAAAAGAT+TGG 0.442756 4_3:+66728220 Msa0657180:CDS
AAATCTTACGACAATTTCCT+TGG 0.443422 4_3:-66726960 None:intergenic
GCTTAGAGAAACCGATAGAT+AGG 0.462516 4_3:-66728413 None:intergenic
TCTAATCGTGGGTTATGATT+CGG 0.463790 4_3:+66728170 Msa0657180:CDS
ACCGATAGATAGGTCTCAAA+AGG 0.478652 4_3:-66728403 None:intergenic
AGGAGCTGTGACTGAAGTTA+GGG 0.480944 4_3:+66726936 Msa0657180:CDS
TTACACCAGCATAGAATTGA+AGG 0.485435 4_3:-66727731 None:intergenic
AGTGTGAGTTTGGATGCAAC+TGG 0.487456 4_3:+66727708 Msa0657180:CDS
AGATGCAGATTCCCTCCAAT+CGG 0.487597 4_3:+66726845 Msa0657180:CDS
CCTGCTAGTAAGGGTTGTGC+TGG 0.489644 4_3:+66727371 Msa0657180:CDS
CTTGAAGGAAAATGCAAACA+AGG 0.490268 4_3:+66727608 Msa0657180:intron
GCATCCAAACTCACACTAAG+AGG 0.491176 4_3:-66727702 None:intergenic
CCAGCACAACCCTTACTAGC+AGG 0.492421 4_3:-66727371 None:intergenic
TTACTTTAATGCATTTGGCT+GGG 0.503500 4_3:+66727400 Msa0657180:CDS
AAGCTTCGCATTGTCCCGAT+TGG 0.506284 4_3:-66726860 None:intergenic
GGCTGGGTTATTGAAAATGG+TGG 0.510307 4_3:+66727416 Msa0657180:CDS
CTTCGCATTGTCCCGATTGG+AGG 0.510526 4_3:-66726857 None:intergenic
GCCATATTGTAGTGCTAGCA+TGG 0.511168 4_3:+66728439 Msa0657180:three_prime_UTR
ACTCTTCCAATTGTGGAAGA+AGG 0.517582 4_3:+66726633 Msa0657180:CDS
GGAAAAGATTGGGGAGAGAA+AGG 0.518533 4_3:+66728231 Msa0657180:CDS
GCTAGTAAGGGTTGTGCTGG+AGG 0.520226 4_3:+66727374 Msa0657180:CDS
ACTGGCCTTCAATTCTATGC+TGG 0.521431 4_3:+66727726 Msa0657180:CDS
TTCCCACTTCTGTAGATTGG+AGG 0.523180 4_3:+66726908 Msa0657180:CDS
TTCCCTCCAATCTACAGAAG+TGG 0.526210 4_3:-66726911 None:intergenic
TCCCTCCAATCTACAGAAGT+GGG 0.527833 4_3:-66726910 None:intergenic
AAAGACATGTAATGGAAATG+AGG 0.531576 4_3:-66726531 None:intergenic
TGTTTGAACTCTTCCAATTG+TGG 0.531957 4_3:+66726626 Msa0657180:CDS
TTGATTGCACATACACCATA+AGG 0.533070 4_3:-66728291 None:intergenic
GTGGGTTATGATTCGGTGAA+TGG 0.534697 4_3:+66728177 Msa0657180:CDS
GATGCAGATTCCCTCCAATC+GGG 0.537566 4_3:+66726846 Msa0657180:CDS
TTCGCATTGTCCCGATTGGA+GGG 0.550989 4_3:-66726856 None:intergenic
GCTGGGTTATTGAAAATGGT+GGG 0.551387 4_3:+66727417 Msa0657180:CDS
AATCTTGTTGGTCTAATCGT+GGG 0.553988 4_3:+66728159 Msa0657180:CDS
TCCCACTTCTGTAGATTGGA+GGG 0.556871 4_3:+66726909 Msa0657180:CDS
TTCAAACACTTCTTCATCAG+AGG 0.560590 4_3:-66726611 None:intergenic
AATTTCTAGCCATGGCAAGT+TGG 0.565364 4_3:+66726579 Msa0657180:CDS
GACTGTGACCCTGCTAGTAA+GGG 0.569928 4_3:+66727362 Msa0657180:CDS
ATTGGGCATTCTCAGTCACT+GGG 0.573858 4_3:+66727273 Msa0657180:CDS
AAATCTTGTTGGTCTAATCG+TGG 0.581439 4_3:+66728158 Msa0657180:CDS
TAGTGCTAGCATGGAATTTG+GGG 0.591842 4_3:+66728448 Msa0657180:three_prime_UTR
GGACTAAACAAAATAGTCAC+GGG 0.593846 4_3:+66727305 Msa0657180:CDS
AAAACTTGTCCAACTTGCCA+TGG 0.594424 4_3:-66726588 None:intergenic
GAGTACTCAATTTCTAGCCA+TGG 0.600592 4_3:+66726571 Msa0657180:CDS
AATTGTGGAAGAAGGAGCAC+GGG 0.602772 4_3:+66726641 Msa0657180:CDS
CTAAAATAGGGAGTCTATGG+TGG 0.604269 4_3:+66728105 Msa0657180:intron
CAATTGTGGAAGAAGGAGCA+CGG 0.616767 4_3:+66726640 Msa0657180:CDS
AGGACTAAACAAAATAGTCA+CGG 0.622654 4_3:+66727304 Msa0657180:CDS
GTGACTGAAGTTAGGGACCA+AGG 0.628455 4_3:+66726943 Msa0657180:CDS
AACTCATGGGGAAAAGATTG+GGG 0.629466 4_3:+66728222 Msa0657180:CDS
CATAATATATATAATAATGG+TGG 0.629674 4_3:+66728524 Msa0657180:three_prime_UTR
TCCAATCTACAGAAGTGGGA+AGG 0.633136 4_3:-66726906 None:intergenic
CAGCACAACCCTTACTAGCA+GGG 0.633326 4_3:-66727370 None:intergenic
CTGATCCATCCAAAACCAGA+AGG 0.636040 4_3:-66727647 None:intergenic
TGTGCAATCAATGCTGCGGT+TGG 0.646120 4_3:+66728303 Msa0657180:CDS
GTACTAGTACATACATAAAG+GGG 0.652331 4_3:-66728494 None:intergenic
CAGTGACTGAGAATGCCCAA+TGG 0.662774 4_3:-66727271 None:intergenic
AATTGAGTACTCACTAGACA+AGG 0.669581 4_3:-66726560 None:intergenic
AGACTATGCCAATTCAGAGG+AGG 0.671634 4_3:+66726666 Msa0657180:CDS
GCGAGACTATGCCAATTCAG+AGG 0.673652 4_3:+66726663 Msa0657180:CDS
ACAGAATGAACTTTGTGATG+TGG 0.681459 4_3:-66726498 None:intergenic
GTTTGCTGATATGAGTCCTG+AGG 0.681956 4_3:+66726792 Msa0657180:CDS
AAGACCAAGAGATCAAACAT+TGG 0.686288 4_3:+66726450 Msa0657180:five_prime_UTR
TTGGGCATTCTCAGTCACTG+GGG 0.757924 4_3:+66727274 Msa0657180:CDS
TGTATGTGCAATCAATGCTG+CGG 0.774207 4_3:+66728299 Msa0657180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTCATAAACATATAT+AGG - chr4_3:66727037-66727056 None:intergenic 10.0%
!!! AATATATAAGTGAATTTTTA+AGG + chr4_3:66727143-66727162 Msa0657180:intron 10.0%
!! AAAAAAAACATATAATTTGA+TGG - chr4_3:66727588-66727607 None:intergenic 10.0%
!!! AAATTTTTAAAACATTAACT+TGG + chr4_3:66727862-66727881 Msa0657180:intron 10.0%
!! TCTCATAATATATATAATAA+TGG + chr4_3:66728521-66728540 Msa0657180:three_prime_UTR 10.0%
!! ATAAAAATATACTTAGAAAA+GGG - chr4_3:66728584-66728603 None:intergenic 10.0%
!! TATAAAAATATACTTAGAAA+AGG - chr4_3:66728585-66728604 None:intergenic 10.0%
!! TTAAATTCATAAACATATAT+AGG - chr4_3:66727037-66727056 None:intergenic 10.0%
!!! AATATATAAGTGAATTTTTA+AGG + chr4_3:66727143-66727162 Msa0657180:intron 10.0%
!! AAAAAAAACATATAATTTGA+TGG - chr4_3:66727588-66727607 None:intergenic 10.0%
!!! AAATTTTTAAAACATTAACT+TGG + chr4_3:66727862-66727881 Msa0657180:intron 10.0%
!! TCTCATAATATATATAATAA+TGG + chr4_3:66728521-66728540 Msa0657180:three_prime_UTR 10.0%
!! ATAAAAATATACTTAGAAAA+GGG - chr4_3:66728584-66728603 None:intergenic 10.0%
!! TATAAAAATATACTTAGAAA+AGG - chr4_3:66728585-66728604 None:intergenic 10.0%
!! TGAAAATTACTAATAAAGAA+TGG - chr4_3:66726999-66727018 None:intergenic 15.0%
!!! TAATAATCCATATATTTTCT+TGG + chr4_3:66727214-66727233 Msa0657180:intron 15.0%
!!! TTATATGTTTTTTTTCTTGA+AGG + chr4_3:66727593-66727612 Msa0657180:intron 15.0%
!! CATAATATATATAATAATGG+TGG + chr4_3:66728524-66728543 Msa0657180:three_prime_UTR 15.0%
!! TGAAAATTACTAATAAAGAA+TGG - chr4_3:66726999-66727018 None:intergenic 15.0%
!!! TAATAATCCATATATTTTCT+TGG + chr4_3:66727214-66727233 Msa0657180:intron 15.0%
!!! TTATATGTTTTTTTTCTTGA+AGG + chr4_3:66727593-66727612 Msa0657180:intron 15.0%
!! CATAATATATATAATAATGG+TGG + chr4_3:66728524-66728543 Msa0657180:three_prime_UTR 15.0%
!! TTTAAATATCTCAAATCTCT+TGG - chr4_3:66726698-66726717 None:intergenic 20.0%
!! CTCATTGATATACTTAAAAT+TGG - chr4_3:66726722-66726741 None:intergenic 20.0%
!!! TACCTTTAGAAAGTATATAT+AGG + chr4_3:66727065-66727084 Msa0657180:intron 20.0%
!! TTCCTATATATACTTTCTAA+AGG - chr4_3:66727070-66727089 None:intergenic 20.0%
!! AATAAGTCCAAGAAAATATA+TGG - chr4_3:66727224-66727243 None:intergenic 20.0%
!!! TATCCTTATTTAGCTAAAAA+TGG + chr4_3:66727458-66727477 Msa0657180:CDS 20.0%
!! TTAGAAAAGACAAATAGTTA+AGG - chr4_3:66727520-66727539 None:intergenic 20.0%
!!! TGCACTTAAGAAATTTTTTT+AGG + chr4_3:66727887-66727906 Msa0657180:intron 20.0%
!!! ATTGTTGTTTTGACTAAAAT+AGG + chr4_3:66728092-66728111 Msa0657180:intron 20.0%
!!! TTGTTGTTTTGACTAAAATA+GGG + chr4_3:66728093-66728112 Msa0657180:intron 20.0%
!! TTTAAATATCTCAAATCTCT+TGG - chr4_3:66726698-66726717 None:intergenic 20.0%
!! CTCATTGATATACTTAAAAT+TGG - chr4_3:66726722-66726741 None:intergenic 20.0%
!!! TACCTTTAGAAAGTATATAT+AGG + chr4_3:66727065-66727084 Msa0657180:intron 20.0%
!! TTCCTATATATACTTTCTAA+AGG - chr4_3:66727070-66727089 None:intergenic 20.0%
!! AATAAGTCCAAGAAAATATA+TGG - chr4_3:66727224-66727243 None:intergenic 20.0%
!!! TATCCTTATTTAGCTAAAAA+TGG + chr4_3:66727458-66727477 Msa0657180:CDS 20.0%
!! TTAGAAAAGACAAATAGTTA+AGG - chr4_3:66727520-66727539 None:intergenic 20.0%
!!! TGCACTTAAGAAATTTTTTT+AGG + chr4_3:66727887-66727906 Msa0657180:intron 20.0%
!!! ATTGTTGTTTTGACTAAAAT+AGG + chr4_3:66728092-66728111 Msa0657180:intron 20.0%
!!! TTGTTGTTTTGACTAAAATA+GGG + chr4_3:66728093-66728112 Msa0657180:intron 20.0%
!! GGTTTTTACTTTAATGCATT+TGG + chr4_3:66727395-66727414 Msa0657180:CDS 25.0%
!!! GTACCATTTTTAGCTAAATA+AGG - chr4_3:66727464-66727483 None:intergenic 25.0%
!! AAAGTCAATTGGTTTAACTA+TGG - chr4_3:66727834-66727853 None:intergenic 25.0%
! TTTGACTATTGAAAGTCAAT+TGG - chr4_3:66727845-66727864 None:intergenic 25.0%
! AAGGTTACTTGTTTATCAAA+AGG + chr4_3:66728250-66728269 Msa0657180:CDS 25.0%
! AAAGGAATGTTATTGAAGAT+TGG + chr4_3:66728268-66728287 Msa0657180:CDS 25.0%
!!! AAGATAAAGCTGTTTTGATT+GGG - chr4_3:66728332-66728351 None:intergenic 25.0%
! AGTACTAGTACATACATAAA+GGG - chr4_3:66728498-66728517 None:intergenic 25.0%
! TAGTACTAGTACATACATAA+AGG - chr4_3:66728499-66728518 None:intergenic 25.0%
!! GGTTTTTACTTTAATGCATT+TGG + chr4_3:66727395-66727414 Msa0657180:CDS 25.0%
!!! GTACCATTTTTAGCTAAATA+AGG - chr4_3:66727464-66727483 None:intergenic 25.0%
!! AAAGTCAATTGGTTTAACTA+TGG - chr4_3:66727834-66727853 None:intergenic 25.0%
! TTTGACTATTGAAAGTCAAT+TGG - chr4_3:66727845-66727864 None:intergenic 25.0%
! AAGGTTACTTGTTTATCAAA+AGG + chr4_3:66728250-66728269 Msa0657180:CDS 25.0%
! AAAGGAATGTTATTGAAGAT+TGG + chr4_3:66728268-66728287 Msa0657180:CDS 25.0%
!!! AAGATAAAGCTGTTTTGATT+GGG - chr4_3:66728332-66728351 None:intergenic 25.0%
! AGTACTAGTACATACATAAA+GGG - chr4_3:66728498-66728517 None:intergenic 25.0%
! TAGTACTAGTACATACATAA+AGG - chr4_3:66728499-66728518 None:intergenic 25.0%
! AAAGACATGTAATGGAAATG+AGG - chr4_3:66726534-66726553 None:intergenic 30.0%
AAATCTTACGACAATTTCCT+TGG - chr4_3:66726963-66726982 None:intergenic 30.0%
!! TTATTTTCTAGAGAGCCATT+GGG + chr4_3:66727256-66727275 Msa0657180:intron 30.0%
AGGACTAAACAAAATAGTCA+CGG + chr4_3:66727304-66727323 Msa0657180:CDS 30.0%
TTTACTTTAATGCATTTGGC+TGG + chr4_3:66727399-66727418 Msa0657180:CDS 30.0%
TTACTTTAATGCATTTGGCT+GGG + chr4_3:66727400-66727419 Msa0657180:CDS 30.0%
! GTGTCGATATATCTTTCAAA+AGG + chr4_3:66727933-66727952 Msa0657180:intron 30.0%
ATCTTTCAAAAGGTTGAATC+TGG + chr4_3:66727943-66727962 Msa0657180:intron 30.0%
AGAACTGCAAAAAAGATTCA+AGG + chr4_3:66728130-66728149 Msa0657180:CDS 30.0%
ATTGGATTGTGAAAAACTCA+TGG + chr4_3:66728208-66728227 Msa0657180:CDS 30.0%
TTGGATTGTGAAAAACTCAT+GGG + chr4_3:66728209-66728228 Msa0657180:CDS 30.0%
!!! GAAGATAAAGCTGTTTTGAT+TGG - chr4_3:66728333-66728352 None:intergenic 30.0%
GTACTAGTACATACATAAAG+GGG - chr4_3:66728497-66728516 None:intergenic 30.0%
CTTAGAAAAGGGAAACTAAA+TGG - chr4_3:66728573-66728592 None:intergenic 30.0%
!!! ATTTGCAACAAATTTTGGCT+CGG - chr4_3:66728701-66728720 None:intergenic 30.0%
! AAAGACATGTAATGGAAATG+AGG - chr4_3:66726534-66726553 None:intergenic 30.0%
AAATCTTACGACAATTTCCT+TGG - chr4_3:66726963-66726982 None:intergenic 30.0%
!! TTATTTTCTAGAGAGCCATT+GGG + chr4_3:66727256-66727275 Msa0657180:intron 30.0%
AGGACTAAACAAAATAGTCA+CGG + chr4_3:66727304-66727323 Msa0657180:CDS 30.0%
TTTACTTTAATGCATTTGGC+TGG + chr4_3:66727399-66727418 Msa0657180:CDS 30.0%
TTACTTTAATGCATTTGGCT+GGG + chr4_3:66727400-66727419 Msa0657180:CDS 30.0%
! GTGTCGATATATCTTTCAAA+AGG + chr4_3:66727933-66727952 Msa0657180:intron 30.0%
ATCTTTCAAAAGGTTGAATC+TGG + chr4_3:66727943-66727962 Msa0657180:intron 30.0%
AGAACTGCAAAAAAGATTCA+AGG + chr4_3:66728130-66728149 Msa0657180:CDS 30.0%
ATTGGATTGTGAAAAACTCA+TGG + chr4_3:66728208-66728227 Msa0657180:CDS 30.0%
TTGGATTGTGAAAAACTCAT+GGG + chr4_3:66728209-66728228 Msa0657180:CDS 30.0%
!!! GAAGATAAAGCTGTTTTGAT+TGG - chr4_3:66728333-66728352 None:intergenic 30.0%
GTACTAGTACATACATAAAG+GGG - chr4_3:66728497-66728516 None:intergenic 30.0%
CTTAGAAAAGGGAAACTAAA+TGG - chr4_3:66728573-66728592 None:intergenic 30.0%
!!! ATTTGCAACAAATTTTGGCT+CGG - chr4_3:66728701-66728720 None:intergenic 30.0%
AATGTTTGATCTCTTGGTCT+TGG - chr4_3:66726451-66726470 None:intergenic 35.0%
AAGACCAAGAGATCAAACAT+TGG + chr4_3:66726450-66726469 Msa0657180:five_prime_UTR 35.0%
GTTACCAATGTTTGATCTCT+TGG - chr4_3:66726457-66726476 None:intergenic 35.0%
ACAGAATGAACTTTGTGATG+TGG - chr4_3:66726501-66726520 None:intergenic 35.0%
GGCAAATGAAAGACATGTAA+TGG - chr4_3:66726542-66726561 None:intergenic 35.0%
AATTGAGTACTCACTAGACA+AGG - chr4_3:66726563-66726582 None:intergenic 35.0%
TTCAAACACTTCTTCATCAG+AGG - chr4_3:66726614-66726633 None:intergenic 35.0%
TGTTTGAACTCTTCCAATTG+TGG + chr4_3:66726626-66726645 Msa0657180:CDS 35.0%
! TAGGTTTTACTAAACTCCTC+AGG - chr4_3:66726811-66726830 None:intergenic 35.0%
CATCTCTATCTTTGGTAAGT+AGG - chr4_3:66726830-66726849 None:intergenic 35.0%
!! GTTATTTTCTAGAGAGCCAT+TGG + chr4_3:66727255-66727274 Msa0657180:intron 35.0%
GGACTAAACAAAATAGTCAC+GGG + chr4_3:66727305-66727324 Msa0657180:CDS 35.0%
! CCATAATTTCTTGTGCTGAT+AGG - chr4_3:66727343-66727362 None:intergenic 35.0%
CCTATCAGCACAAGAAATTA+TGG + chr4_3:66727340-66727359 Msa0657180:CDS 35.0%
TTTGGCTGGGTTATTGAAAA+TGG + chr4_3:66727413-66727432 Msa0657180:CDS 35.0%
AGCTAAAAATGGTACTTGCA+AGG + chr4_3:66727469-66727488 Msa0657180:CDS 35.0%
! CATTCTAACATCTTAGCTTG+TGG + chr4_3:66727560-66727579 Msa0657180:intron 35.0%
CTTGAAGGAAAATGCAAACA+AGG + chr4_3:66727608-66727627 Msa0657180:intron 35.0%
!! TGTTAGTATTGACAACCTTC+TGG + chr4_3:66727632-66727651 Msa0657180:CDS 35.0%
!!! TATTGACAACCTTCTGGTTT+TGG + chr4_3:66727638-66727657 Msa0657180:CDS 35.0%
TTACACCAGCATAGAATTGA+AGG - chr4_3:66727734-66727753 None:intergenic 35.0%
TAAAGTTTAGTGCTAATGCG+AGG + chr4_3:66727911-66727930 Msa0657180:intron 35.0%
TGACTAAAATAGGGAGTCTA+TGG + chr4_3:66728102-66728121 Msa0657180:intron 35.0%
TCAAGGAATGCAAATCTTGT+TGG + chr4_3:66728147-66728166 Msa0657180:CDS 35.0%
! AAATCTTGTTGGTCTAATCG+TGG + chr4_3:66728158-66728177 Msa0657180:CDS 35.0%
! AATCTTGTTGGTCTAATCGT+GGG + chr4_3:66728159-66728178 Msa0657180:CDS 35.0%
! TCTAATCGTGGGTTATGATT+CGG + chr4_3:66728170-66728189 Msa0657180:CDS 35.0%
TGGATTGTGAAAAACTCATG+GGG + chr4_3:66728210-66728229 Msa0657180:CDS 35.0%
AAAACTCATGGGGAAAAGAT+TGG + chr4_3:66728220-66728239 Msa0657180:CDS 35.0%
AAACTCATGGGGAAAAGATT+GGG + chr4_3:66728221-66728240 Msa0657180:CDS 35.0%
!! GTTATTGAAGATTGGCCTTA+TGG + chr4_3:66728276-66728295 Msa0657180:CDS 35.0%
TTGATTGCACATACACCATA+AGG - chr4_3:66728294-66728313 None:intergenic 35.0%
CTTTATCTTCAGCCATTTAG+TGG + chr4_3:66728343-66728362 Msa0657180:CDS 35.0%
!!! TCCTTTTGAGACCTATCTAT+CGG + chr4_3:66728402-66728421 Msa0657180:three_prime_UTR 35.0%
! GTCTACTCATTTTGTATGCT+GGG - chr4_3:66728678-66728697 None:intergenic 35.0%
!!! TTTGCAACAAATTTTGGCTC+GGG - chr4_3:66728700-66728719 None:intergenic 35.0%
AATGTTTGATCTCTTGGTCT+TGG - chr4_3:66726451-66726470 None:intergenic 35.0%
AAGACCAAGAGATCAAACAT+TGG + chr4_3:66726450-66726469 Msa0657180:five_prime_UTR 35.0%
GTTACCAATGTTTGATCTCT+TGG - chr4_3:66726457-66726476 None:intergenic 35.0%
ACAGAATGAACTTTGTGATG+TGG - chr4_3:66726501-66726520 None:intergenic 35.0%
GGCAAATGAAAGACATGTAA+TGG - chr4_3:66726542-66726561 None:intergenic 35.0%
AATTGAGTACTCACTAGACA+AGG - chr4_3:66726563-66726582 None:intergenic 35.0%
TTCAAACACTTCTTCATCAG+AGG - chr4_3:66726614-66726633 None:intergenic 35.0%
TGTTTGAACTCTTCCAATTG+TGG + chr4_3:66726626-66726645 Msa0657180:CDS 35.0%
! TAGGTTTTACTAAACTCCTC+AGG - chr4_3:66726811-66726830 None:intergenic 35.0%
CATCTCTATCTTTGGTAAGT+AGG - chr4_3:66726830-66726849 None:intergenic 35.0%
!! GTTATTTTCTAGAGAGCCAT+TGG + chr4_3:66727255-66727274 Msa0657180:intron 35.0%
GGACTAAACAAAATAGTCAC+GGG + chr4_3:66727305-66727324 Msa0657180:CDS 35.0%
! CCATAATTTCTTGTGCTGAT+AGG - chr4_3:66727343-66727362 None:intergenic 35.0%
CCTATCAGCACAAGAAATTA+TGG + chr4_3:66727340-66727359 Msa0657180:CDS 35.0%
TTTGGCTGGGTTATTGAAAA+TGG + chr4_3:66727413-66727432 Msa0657180:CDS 35.0%
AGCTAAAAATGGTACTTGCA+AGG + chr4_3:66727469-66727488 Msa0657180:CDS 35.0%
! CATTCTAACATCTTAGCTTG+TGG + chr4_3:66727560-66727579 Msa0657180:intron 35.0%
CTTGAAGGAAAATGCAAACA+AGG + chr4_3:66727608-66727627 Msa0657180:intron 35.0%
!! TGTTAGTATTGACAACCTTC+TGG + chr4_3:66727632-66727651 Msa0657180:CDS 35.0%
!!! TATTGACAACCTTCTGGTTT+TGG + chr4_3:66727638-66727657 Msa0657180:CDS 35.0%
TTACACCAGCATAGAATTGA+AGG - chr4_3:66727734-66727753 None:intergenic 35.0%
TAAAGTTTAGTGCTAATGCG+AGG + chr4_3:66727911-66727930 Msa0657180:intron 35.0%
TGACTAAAATAGGGAGTCTA+TGG + chr4_3:66728102-66728121 Msa0657180:intron 35.0%
TCAAGGAATGCAAATCTTGT+TGG + chr4_3:66728147-66728166 Msa0657180:CDS 35.0%
! AAATCTTGTTGGTCTAATCG+TGG + chr4_3:66728158-66728177 Msa0657180:CDS 35.0%
! AATCTTGTTGGTCTAATCGT+GGG + chr4_3:66728159-66728178 Msa0657180:CDS 35.0%
! TCTAATCGTGGGTTATGATT+CGG + chr4_3:66728170-66728189 Msa0657180:CDS 35.0%
TGGATTGTGAAAAACTCATG+GGG + chr4_3:66728210-66728229 Msa0657180:CDS 35.0%
AAAACTCATGGGGAAAAGAT+TGG + chr4_3:66728220-66728239 Msa0657180:CDS 35.0%
AAACTCATGGGGAAAAGATT+GGG + chr4_3:66728221-66728240 Msa0657180:CDS 35.0%
!! GTTATTGAAGATTGGCCTTA+TGG + chr4_3:66728276-66728295 Msa0657180:CDS 35.0%
TTGATTGCACATACACCATA+AGG - chr4_3:66728294-66728313 None:intergenic 35.0%
CTTTATCTTCAGCCATTTAG+TGG + chr4_3:66728343-66728362 Msa0657180:CDS 35.0%
!!! TCCTTTTGAGACCTATCTAT+CGG + chr4_3:66728402-66728421 Msa0657180:three_prime_UTR 35.0%
! GTCTACTCATTTTGTATGCT+GGG - chr4_3:66728678-66728697 None:intergenic 35.0%
!!! TTTGCAACAAATTTTGGCTC+GGG - chr4_3:66728700-66728719 None:intergenic 35.0%
!! GAGTACTCAATTTCTAGCCA+TGG + chr4_3:66726571-66726590 Msa0657180:CDS 40.0%
!! AATTTCTAGCCATGGCAAGT+TGG + chr4_3:66726579-66726598 Msa0657180:CDS 40.0%
AAAACTTGTCCAACTTGCCA+TGG - chr4_3:66726591-66726610 None:intergenic 40.0%
ACTCTTCCAATTGTGGAAGA+AGG + chr4_3:66726633-66726652 Msa0657180:CDS 40.0%
GGAATCTGCATCTCTATCTT+TGG - chr4_3:66726838-66726857 None:intergenic 40.0%
TCTGTAGATTGGAGGGAAAA+AGG + chr4_3:66726916-66726935 Msa0657180:CDS 40.0%
GCTGGGTTATTGAAAATGGT+GGG + chr4_3:66727417-66727436 Msa0657180:CDS 40.0%
ACAACCTCTTAGTGTGAGTT+TGG + chr4_3:66727698-66727717 Msa0657180:CDS 40.0%
CTAAAATAGGGAGTCTATGG+TGG + chr4_3:66728105-66728124 Msa0657180:intron 40.0%
AACTCATGGGGAAAAGATTG+GGG + chr4_3:66728222-66728241 Msa0657180:CDS 40.0%
TGTATGTGCAATCAATGCTG+CGG + chr4_3:66728299-66728318 Msa0657180:CDS 40.0%
ATCTTCAGCCATTTAGTGGT+TGG + chr4_3:66728347-66728366 Msa0657180:exon 40.0%
TGCTCTAACCAACCACTAAA+TGG - chr4_3:66728358-66728377 None:intergenic 40.0%
ACCGATAGATAGGTCTCAAA+AGG - chr4_3:66728406-66728425 None:intergenic 40.0%
GCTTAGAGAAACCGATAGAT+AGG - chr4_3:66728416-66728435 None:intergenic 40.0%
TCCATGCTAGCACTACAATA+TGG - chr4_3:66728443-66728462 None:intergenic 40.0%
TGTAGTGCTAGCATGGAATT+TGG + chr4_3:66728446-66728465 Msa0657180:three_prime_UTR 40.0%
GTAGTGCTAGCATGGAATTT+GGG + chr4_3:66728447-66728466 Msa0657180:three_prime_UTR 40.0%
TAGTGCTAGCATGGAATTTG+GGG + chr4_3:66728448-66728467 Msa0657180:three_prime_UTR 40.0%
!!! GAGCTAGTTTGCTCATTTTC+AGG - chr4_3:66728630-66728649 None:intergenic 40.0%
! GGTCTACTCATTTTGTATGC+TGG - chr4_3:66728679-66728698 None:intergenic 40.0%
!! GAGTACTCAATTTCTAGCCA+TGG + chr4_3:66726571-66726590 Msa0657180:CDS 40.0%
!! AATTTCTAGCCATGGCAAGT+TGG + chr4_3:66726579-66726598 Msa0657180:CDS 40.0%
AAAACTTGTCCAACTTGCCA+TGG - chr4_3:66726591-66726610 None:intergenic 40.0%
ACTCTTCCAATTGTGGAAGA+AGG + chr4_3:66726633-66726652 Msa0657180:CDS 40.0%
GGAATCTGCATCTCTATCTT+TGG - chr4_3:66726838-66726857 None:intergenic 40.0%
TCTGTAGATTGGAGGGAAAA+AGG + chr4_3:66726916-66726935 Msa0657180:CDS 40.0%
GCTGGGTTATTGAAAATGGT+GGG + chr4_3:66727417-66727436 Msa0657180:CDS 40.0%
ACAACCTCTTAGTGTGAGTT+TGG + chr4_3:66727698-66727717 Msa0657180:CDS 40.0%
CTAAAATAGGGAGTCTATGG+TGG + chr4_3:66728105-66728124 Msa0657180:intron 40.0%
AACTCATGGGGAAAAGATTG+GGG + chr4_3:66728222-66728241 Msa0657180:CDS 40.0%
TGTATGTGCAATCAATGCTG+CGG + chr4_3:66728299-66728318 Msa0657180:CDS 40.0%
ATCTTCAGCCATTTAGTGGT+TGG + chr4_3:66728347-66728366 Msa0657180:exon 40.0%
TGCTCTAACCAACCACTAAA+TGG - chr4_3:66728358-66728377 None:intergenic 40.0%
ACCGATAGATAGGTCTCAAA+AGG - chr4_3:66728406-66728425 None:intergenic 40.0%
GCTTAGAGAAACCGATAGAT+AGG - chr4_3:66728416-66728435 None:intergenic 40.0%
TCCATGCTAGCACTACAATA+TGG - chr4_3:66728443-66728462 None:intergenic 40.0%
TGTAGTGCTAGCATGGAATT+TGG + chr4_3:66728446-66728465 Msa0657180:three_prime_UTR 40.0%
GTAGTGCTAGCATGGAATTT+GGG + chr4_3:66728447-66728466 Msa0657180:three_prime_UTR 40.0%
TAGTGCTAGCATGGAATTTG+GGG + chr4_3:66728448-66728467 Msa0657180:three_prime_UTR 40.0%
!!! GAGCTAGTTTGCTCATTTTC+AGG - chr4_3:66728630-66728649 None:intergenic 40.0%
! GGTCTACTCATTTTGTATGC+TGG - chr4_3:66728679-66728698 None:intergenic 40.0%
CAATTGTGGAAGAAGGAGCA+CGG + chr4_3:66726640-66726659 Msa0657180:CDS 45.0%
! AATTGTGGAAGAAGGAGCAC+GGG + chr4_3:66726641-66726660 Msa0657180:CDS 45.0%
AGACTATGCCAATTCAGAGG+AGG + chr4_3:66726666-66726685 Msa0657180:CDS 45.0%
! GGCATTTTCCTCCTCTGAAT+TGG - chr4_3:66726677-66726696 None:intergenic 45.0%
! GTTTGCTGATATGAGTCCTG+AGG + chr4_3:66726792-66726811 Msa0657180:CDS 45.0%
AGATGCAGATTCCCTCCAAT+CGG + chr4_3:66726845-66726864 Msa0657180:CDS 45.0%
ACCTTCCCACTTCTGTAGAT+TGG + chr4_3:66726905-66726924 Msa0657180:CDS 45.0%
TCCAATCTACAGAAGTGGGA+AGG - chr4_3:66726909-66726928 None:intergenic 45.0%
TTCCCACTTCTGTAGATTGG+AGG + chr4_3:66726908-66726927 Msa0657180:CDS 45.0%
TCCCACTTCTGTAGATTGGA+GGG + chr4_3:66726909-66726928 Msa0657180:CDS 45.0%
TCCCTCCAATCTACAGAAGT+GGG - chr4_3:66726913-66726932 None:intergenic 45.0%
TTCCCTCCAATCTACAGAAG+TGG - chr4_3:66726914-66726933 None:intergenic 45.0%
AAGGAGCTGTGACTGAAGTT+AGG + chr4_3:66726935-66726954 Msa0657180:CDS 45.0%
AGGAGCTGTGACTGAAGTTA+GGG + chr4_3:66726936-66726955 Msa0657180:CDS 45.0%
ATTGGGCATTCTCAGTCACT+GGG + chr4_3:66727273-66727292 Msa0657180:CDS 45.0%
GGCTGGGTTATTGAAAATGG+TGG + chr4_3:66727416-66727435 Msa0657180:CDS 45.0%
!!! GACAACCTTCTGGTTTTGGA+TGG + chr4_3:66727642-66727661 Msa0657180:CDS 45.0%
CTGATCCATCCAAAACCAGA+AGG - chr4_3:66727650-66727669 None:intergenic 45.0%
GCATCCAAACTCACACTAAG+AGG - chr4_3:66727705-66727724 None:intergenic 45.0%
AGTGTGAGTTTGGATGCAAC+TGG + chr4_3:66727708-66727727 Msa0657180:CDS 45.0%
!! ACTGGCCTTCAATTCTATGC+TGG + chr4_3:66727726-66727745 Msa0657180:CDS 45.0%
!! GTGGGTTATGATTCGGTGAA+TGG + chr4_3:66728177-66728196 Msa0657180:CDS 45.0%
CGGTGAATGGTGAAGACTAT+TGG + chr4_3:66728190-66728209 Msa0657180:CDS 45.0%
GGAAAAGATTGGGGAGAGAA+AGG + chr4_3:66728231-66728250 Msa0657180:CDS 45.0%
GCCATATTGTAGTGCTAGCA+TGG + chr4_3:66728439-66728458 Msa0657180:three_prime_UTR 45.0%
CAATTGTGGAAGAAGGAGCA+CGG + chr4_3:66726640-66726659 Msa0657180:CDS 45.0%
! AATTGTGGAAGAAGGAGCAC+GGG + chr4_3:66726641-66726660 Msa0657180:CDS 45.0%
AGACTATGCCAATTCAGAGG+AGG + chr4_3:66726666-66726685 Msa0657180:CDS 45.0%
! GGCATTTTCCTCCTCTGAAT+TGG - chr4_3:66726677-66726696 None:intergenic 45.0%
! GTTTGCTGATATGAGTCCTG+AGG + chr4_3:66726792-66726811 Msa0657180:CDS 45.0%
AGATGCAGATTCCCTCCAAT+CGG + chr4_3:66726845-66726864 Msa0657180:CDS 45.0%
ACCTTCCCACTTCTGTAGAT+TGG + chr4_3:66726905-66726924 Msa0657180:CDS 45.0%
TCCAATCTACAGAAGTGGGA+AGG - chr4_3:66726909-66726928 None:intergenic 45.0%
TTCCCACTTCTGTAGATTGG+AGG + chr4_3:66726908-66726927 Msa0657180:CDS 45.0%
TCCCACTTCTGTAGATTGGA+GGG + chr4_3:66726909-66726928 Msa0657180:CDS 45.0%
TCCCTCCAATCTACAGAAGT+GGG - chr4_3:66726913-66726932 None:intergenic 45.0%
TTCCCTCCAATCTACAGAAG+TGG - chr4_3:66726914-66726933 None:intergenic 45.0%
AAGGAGCTGTGACTGAAGTT+AGG + chr4_3:66726935-66726954 Msa0657180:CDS 45.0%
AGGAGCTGTGACTGAAGTTA+GGG + chr4_3:66726936-66726955 Msa0657180:CDS 45.0%
ATTGGGCATTCTCAGTCACT+GGG + chr4_3:66727273-66727292 Msa0657180:CDS 45.0%
GGCTGGGTTATTGAAAATGG+TGG + chr4_3:66727416-66727435 Msa0657180:CDS 45.0%
!!! GACAACCTTCTGGTTTTGGA+TGG + chr4_3:66727642-66727661 Msa0657180:CDS 45.0%
CTGATCCATCCAAAACCAGA+AGG - chr4_3:66727650-66727669 None:intergenic 45.0%
GCATCCAAACTCACACTAAG+AGG - chr4_3:66727705-66727724 None:intergenic 45.0%
AGTGTGAGTTTGGATGCAAC+TGG + chr4_3:66727708-66727727 Msa0657180:CDS 45.0%
!! ACTGGCCTTCAATTCTATGC+TGG + chr4_3:66727726-66727745 Msa0657180:CDS 45.0%
!! GTGGGTTATGATTCGGTGAA+TGG + chr4_3:66728177-66728196 Msa0657180:CDS 45.0%
CGGTGAATGGTGAAGACTAT+TGG + chr4_3:66728190-66728209 Msa0657180:CDS 45.0%
GGAAAAGATTGGGGAGAGAA+AGG + chr4_3:66728231-66728250 Msa0657180:CDS 45.0%
GCCATATTGTAGTGCTAGCA+TGG + chr4_3:66728439-66728458 Msa0657180:three_prime_UTR 45.0%
CGTGCTCCTTCTTCCACAAT+TGG - chr4_3:66726642-66726661 None:intergenic 50.0%
GCGAGACTATGCCAATTCAG+AGG + chr4_3:66726663-66726682 Msa0657180:CDS 50.0%
GATGCAGATTCCCTCCAATC+GGG + chr4_3:66726846-66726865 Msa0657180:CDS 50.0%
TTCGCATTGTCCCGATTGGA+GGG - chr4_3:66726859-66726878 None:intergenic 50.0%
AAGCTTCGCATTGTCCCGAT+TGG - chr4_3:66726863-66726882 None:intergenic 50.0%
GTGACTGAAGTTAGGGACCA+AGG + chr4_3:66726943-66726962 Msa0657180:CDS 50.0%
CAGTGACTGAGAATGCCCAA+TGG - chr4_3:66727274-66727293 None:intergenic 50.0%
CATTGGGCATTCTCAGTCAC+TGG + chr4_3:66727272-66727291 Msa0657180:CDS 50.0%
TTGGGCATTCTCAGTCACTG+GGG + chr4_3:66727274-66727293 Msa0657180:CDS 50.0%
TCAGTCACTGGGGCAATTGA+AGG + chr4_3:66727284-66727303 Msa0657180:CDS 50.0%
GACTGTGACCCTGCTAGTAA+GGG + chr4_3:66727362-66727381 Msa0657180:CDS 50.0%
CAGCACAACCCTTACTAGCA+GGG - chr4_3:66727373-66727392 None:intergenic 50.0%
TGTGCAATCAATGCTGCGGT+TGG + chr4_3:66728303-66728322 Msa0657180:CDS 50.0%
CGTGCTCCTTCTTCCACAAT+TGG - chr4_3:66726642-66726661 None:intergenic 50.0%
GCGAGACTATGCCAATTCAG+AGG + chr4_3:66726663-66726682 Msa0657180:CDS 50.0%
GATGCAGATTCCCTCCAATC+GGG + chr4_3:66726846-66726865 Msa0657180:CDS 50.0%
TTCGCATTGTCCCGATTGGA+GGG - chr4_3:66726859-66726878 None:intergenic 50.0%
AAGCTTCGCATTGTCCCGAT+TGG - chr4_3:66726863-66726882 None:intergenic 50.0%
GTGACTGAAGTTAGGGACCA+AGG + chr4_3:66726943-66726962 Msa0657180:CDS 50.0%
CAGTGACTGAGAATGCCCAA+TGG - chr4_3:66727274-66727293 None:intergenic 50.0%
CATTGGGCATTCTCAGTCAC+TGG + chr4_3:66727272-66727291 Msa0657180:CDS 50.0%
TTGGGCATTCTCAGTCACTG+GGG + chr4_3:66727274-66727293 Msa0657180:CDS 50.0%
TCAGTCACTGGGGCAATTGA+AGG + chr4_3:66727284-66727303 Msa0657180:CDS 50.0%
GACTGTGACCCTGCTAGTAA+GGG + chr4_3:66727362-66727381 Msa0657180:CDS 50.0%
CAGCACAACCCTTACTAGCA+GGG - chr4_3:66727373-66727392 None:intergenic 50.0%
TGTGCAATCAATGCTGCGGT+TGG + chr4_3:66728303-66728322 Msa0657180:CDS 50.0%
CTTCGCATTGTCCCGATTGG+AGG - chr4_3:66726860-66726879 None:intergenic 55.0%
GGACTGTGACCCTGCTAGTA+AGG + chr4_3:66727361-66727380 Msa0657180:CDS 55.0%
CCAGCACAACCCTTACTAGC+AGG - chr4_3:66727374-66727393 None:intergenic 55.0%
CCTGCTAGTAAGGGTTGTGC+TGG + chr4_3:66727371-66727390 Msa0657180:CDS 55.0%
GCTAGTAAGGGTTGTGCTGG+AGG + chr4_3:66727374-66727393 Msa0657180:CDS 55.0%
CTTCGCATTGTCCCGATTGG+AGG - chr4_3:66726860-66726879 None:intergenic 55.0%
GGACTGTGACCCTGCTAGTA+AGG + chr4_3:66727361-66727380 Msa0657180:CDS 55.0%
CCAGCACAACCCTTACTAGC+AGG - chr4_3:66727374-66727393 None:intergenic 55.0%
CCTGCTAGTAAGGGTTGTGC+TGG + chr4_3:66727371-66727390 Msa0657180:CDS 55.0%
GCTAGTAAGGGTTGTGCTGG+AGG + chr4_3:66727374-66727393 Msa0657180:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 66726444 66728724 66726444 ID=Msa0657180;Name=Msa0657180
chr4_3 mRNA 66726444 66728724 66726444 ID=Msa0657180-mRNA-1;Parent=Msa0657180;Name=Msa0657180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43|1|1|1|1|1|4|362|364
chr4_3 exon 66726444 66726973 66726444 ID=Msa0657180-mRNA-1:exon:19200;Parent=Msa0657180-mRNA-1
chr4_3 exon 66727267 66727490 66727267 ID=Msa0657180-mRNA-1:exon:19201;Parent=Msa0657180-mRNA-1
chr4_3 exon 66727615 66727749 66727615 ID=Msa0657180-mRNA-1:exon:19202;Parent=Msa0657180-mRNA-1
chr4_3 exon 66728114 66728724 66728114 ID=Msa0657180-mRNA-1:exon:19203;Parent=Msa0657180-mRNA-1
chr4_3 five_prime_UTR 66726444 66726486 66726444 ID=Msa0657180-mRNA-1:five_prime_utr;Parent=Msa0657180-mRNA-1
chr4_3 CDS 66726487 66726973 66726487 ID=Msa0657180-mRNA-1:cds;Parent=Msa0657180-mRNA-1
chr4_3 CDS 66727267 66727490 66727267 ID=Msa0657180-mRNA-1:cds;Parent=Msa0657180-mRNA-1
chr4_3 CDS 66727615 66727749 66727615 ID=Msa0657180-mRNA-1:cds;Parent=Msa0657180-mRNA-1
chr4_3 CDS 66728114 66728362 66728114 ID=Msa0657180-mRNA-1:cds;Parent=Msa0657180-mRNA-1
chr4_3 three_prime_UTR 66728363 66728724 66728363 ID=Msa0657180-mRNA-1:three_prime_utr;Parent=Msa0657180-mRNA-1
Gene Sequence

>Msa0657180

ATGATGATATACCACATCACAAAGTTCATTCTGTCTTTTTTAATCCTCATTTCCATTACATGTCTTTCATTTGCCTTGTCTAGTGAGTACTCAATTTCTAGCCATGGCAAGTTGGACAAGTTTTCCTCTGATGAAGAAGTGTTTGAACTCTTCCAATTGTGGAAGAAGGAGCACGGGCGAGACTATGCCAATTCAGAGGAGGAAAATGCCAAGAGATTTGAGATATTTAAAACCAATTTTAAGTATATCAATGAGATGAATGCAAAGAGAAAATCGCAAACACAACATCGTTTGAGTCTCAACAAGTTTGCTGATATGAGTCCTGAGGAGTTTAGTAAAACCTACTTACCAAAGATAGAGATGCAGATTCCCTCCAATCGGGACAATGCGAAGCTTAGAGATGATGATGATTGTGAAAACCTTCCCACTTCTGTAGATTGGAGGGAAAAAGGAGCTGTGACTGAAGTTAGGGACCAAGGAAATTGTCAGAGCCATTGGGCATTCTCAGTCACTGGGGCAATTGAAGGACTAAACAAAATAGTCACGGGAAATCTTATCAACCTATCAGCACAAGAAATTATGGACTGTGACCCTGCTAGTAAGGGTTGTGCTGGAGGTTTTTACTTTAATGCATTTGGCTGGGTTATTGAAAATGGTGGGATTGATACAGAAGCTAACTATCCTTATTTAGCTAAAAATGGTACTTGCAAGGAAAATGCAAACAAGGTTGTTAGTATTGACAACCTTCTGGTTTTGGATGGATCAGAAGAAGCACTTTTGTGTCGTTCTAGTAAACAACCTCTTAGTGTGAGTTTGGATGCAACTGGCCTTCAATTCTATGCTGGTGGAGTCTATGGTGGTGAGAACTGCAAAAAAGATTCAAGGAATGCAAATCTTGTTGGTCTAATCGTGGGTTATGATTCGGTGAATGGTGAAGACTATTGGATTGTGAAAAACTCATGGGGAAAAGATTGGGGAGAGAAAGGTTACTTGTTTATCAAAAGGAATGTTATTGAAGATTGGCCTTATGGTGTATGTGCAATCAATGCTGCGGTTGGTTACCCAATCAAAACAGCTTTATCTTCAGCCATTTAG
Protein sequence

>Msa0657180

MMIYHITKFILSFLILISITCLSFALSSEYSISSHGKLDKFSSDEEVFELFQLWKKEHGRDYANSEEENAKRFEIFKTNFKYINEMNAKRKSQTQHRLSLNKFADMSPEEFSKTYLPKIEMQIPSNRDNAKLRDDDDCENLPTSVDWREKGAVTEVRDQGNCQSHWAFSVTGAIEGLNKIVTGNLINLSAQEIMDCDPASKGCAGGFYFNAFGWVIENGGIDTEANYPYLAKNGTCKENANKVVSIDNLLVLDGSEEALLCRSSKQPLSVSLDATGLQFYAGGVYGGENCKKDSRNANLVGLIVGYDSVNGEDYWIVKNSWGKDWGEKGYLFIKRNVIEDWPYGVCAINAAVGYPIKTALSSAI*