Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267900 | AET04256.1 | 93.902 | 82 | 5 | 0 | 14 | 95 | 283 | 364 | 3.18e-48 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267900 | sp|P22895|P34_SOYBN | 50.667 | 75 | 34 | 2 | 14 | 88 | 286 | 357 | 2.82e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267900 | G7LJF1 | 93.902 | 82 | 5 | 0 | 14 | 95 | 283 | 364 | 1.52e-48 | 167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1267900 | 0.805677 | 1.189434e-49 | -8.615850e-47 |
| Msa0017510 | Msa1267900 | 0.802498 | 5.453792e-49 | -8.615850e-47 |
| Msa0018000 | Msa1267900 | 0.808573 | 2.898718e-50 | -8.615850e-47 |
| Msa0022550 | Msa1267900 | 0.829546 | 4.845273e-55 | -8.615850e-47 |
| Msa0029880 | Msa1267900 | 0.809118 | 2.216500e-50 | -8.615850e-47 |
| Msa0036130 | Msa1267900 | 0.805684 | 1.185430e-49 | -8.615850e-47 |
| Msa0049790 | Msa1267900 | 0.811479 | 6.857797e-51 | -8.615850e-47 |
| Msa0074240 | Msa1267900 | 0.827956 | 1.174943e-54 | -8.615850e-47 |
| Msa0081520 | Msa1267900 | 0.828731 | 7.637293e-55 | -8.615850e-47 |
| Msa0091600 | Msa1267900 | 0.810876 | 9.270669e-51 | -8.615850e-47 |
| Msa0106620 | Msa1267900 | 0.800245 | 1.577697e-48 | -8.615850e-47 |
| Msa0120400 | Msa1267900 | 0.804130 | 2.504485e-49 | -8.615850e-47 |
| Msa0620230 | Msa1267900 | 0.835442 | 1.674277e-56 | -8.615850e-47 |
| Msa0626450 | Msa1267900 | 0.803883 | 2.818156e-49 | -8.615850e-47 |
| Msa0626490 | Msa1267900 | 0.801511 | 8.700775e-49 | -8.615850e-47 |
| Msa0626510 | Msa1267900 | 0.801866 | 7.356983e-49 | -8.615850e-47 |
| Msa0627450 | Msa1267900 | 0.801159 | 1.026731e-48 | -8.615850e-47 |
| Msa0638480 | Msa1267900 | 0.804116 | 2.520638e-49 | -8.615850e-47 |
| Msa0641210 | Msa1267900 | 0.805979 | 1.027659e-49 | -8.615850e-47 |
| Msa0643080 | Msa1267900 | 0.841455 | 4.701769e-58 | -8.615850e-47 |
| Msa0657180 | Msa1267900 | 0.908439 | 1.708597e-81 | -8.615850e-47 |
| Msa0662500 | Msa1267900 | 0.806914 | 6.525873e-50 | -8.615850e-47 |
| Msa0664150 | Msa1267900 | 0.804554 | 2.042708e-49 | -8.615850e-47 |
| Msa0664600 | Msa1267900 | 0.800117 | 1.675198e-48 | -8.615850e-47 |
| Msa0667050 | Msa1267900 | 0.806980 | 6.320569e-50 | -8.615850e-47 |
| Msa0667780 | Msa1267900 | 0.821992 | 3.005279e-53 | -8.615850e-47 |
| Msa0667800 | Msa1267900 | 0.820288 | 7.424366e-53 | -8.615850e-47 |
| Msa0677410 | Msa1267900 | 0.808764 | 2.638151e-50 | -8.615850e-47 |
| Msa0697160 | Msa1267900 | 0.808728 | 2.685927e-50 | -8.615850e-47 |
| Msa0701220 | Msa1267900 | 0.901378 | 2.845909e-78 | -8.615850e-47 |
| Msa0710270 | Msa1267900 | 0.815516 | 8.881720e-52 | -8.615850e-47 |
| Msa0715420 | Msa1267900 | 0.802378 | 5.772251e-49 | -8.615850e-47 |
| Msa0724000 | Msa1267900 | 0.806430 | 8.256626e-50 | -8.615850e-47 |
| Msa0724910 | Msa1267900 | 0.805405 | 1.356633e-49 | -8.615850e-47 |
| Msa0727640 | Msa1267900 | 0.811190 | 7.924514e-51 | -8.615850e-47 |
| Msa0733390 | Msa1267900 | 0.808208 | 3.467989e-50 | -8.615850e-47 |
| Msa0739730 | Msa1267900 | 0.819243 | 1.286834e-52 | -8.615850e-47 |
| Msa0741220 | Msa1267900 | 0.808995 | 2.354685e-50 | -8.615850e-47 |
| Msa0765240 | Msa1267900 | 0.824406 | 8.212958e-54 | -8.615850e-47 |
| Msa0766580 | Msa1267900 | 0.801780 | 7.661270e-49 | -8.615850e-47 |
| Msa0768990 | Msa1267900 | 0.811871 | 5.636526e-51 | -8.615850e-47 |
| Msa0769180 | Msa1267900 | 0.809726 | 1.640700e-50 | -8.615850e-47 |
| Msa0780270 | Msa1267900 | 0.825838 | 3.768342e-54 | -8.615850e-47 |
| Msa0795250 | Msa1267900 | 0.812205 | 4.766090e-51 | -8.615850e-47 |
| Msa0795870 | Msa1267900 | 0.810064 | 1.388112e-50 | -8.615850e-47 |
| Msa0822870 | Msa1267900 | 0.817882 | 2.619092e-52 | -8.615850e-47 |
| Msa0826130 | Msa1267900 | 0.801162 | 1.025676e-48 | -8.615850e-47 |
| Msa0833650 | Msa1267900 | 0.806713 | 7.197526e-50 | -8.615850e-47 |
| Msa0836850 | Msa1267900 | 0.815794 | 7.702362e-52 | -8.615850e-47 |
| Msa0123100 | Msa1267900 | 0.820257 | 7.545871e-53 | -8.615850e-47 |
| Msa0125090 | Msa1267900 | 0.807420 | 5.099019e-50 | -8.615850e-47 |
| Msa0146260 | Msa1267900 | 0.813668 | 2.278299e-51 | -8.615850e-47 |
| Msa0149300 | Msa1267900 | 0.801031 | 1.090861e-48 | -8.615850e-47 |
| Msa0152400 | Msa1267900 | 0.801088 | 1.061945e-48 | -8.615850e-47 |
| Msa0157290 | Msa1267900 | 0.802474 | 5.515751e-49 | -8.615850e-47 |
| Msa0169860 | Msa1267900 | 0.823197 | 1.576689e-53 | -8.615850e-47 |
| Msa0173390 | Msa1267900 | 0.809183 | 2.146225e-50 | -8.615850e-47 |
| Msa0173890 | Msa1267900 | 0.817720 | 2.849087e-52 | -8.615850e-47 |
| Msa0188150 | Msa1267900 | 0.818070 | 2.374777e-52 | -8.615850e-47 |
| Msa0197420 | Msa1267900 | 0.824970 | 6.048439e-54 | -8.615850e-47 |
| Msa0197930 | Msa1267900 | 0.818603 | 1.798247e-52 | -8.615850e-47 |
| Msa0211150 | Msa1267900 | 0.811356 | 7.292225e-51 | -8.615850e-47 |
| Msa0218810 | Msa1267900 | 0.827004 | 1.987073e-54 | -8.615850e-47 |
| Msa0223080 | Msa1267900 | 0.800713 | 1.266613e-48 | -8.615850e-47 |
| Msa0225100 | Msa1267900 | 0.807882 | 4.067676e-50 | -8.615850e-47 |
| Msa0225460 | Msa1267900 | 0.807965 | 3.905419e-50 | -8.615850e-47 |
| Msa0225680 | Msa1267900 | 0.810789 | 9.681271e-51 | -8.615850e-47 |
| Msa0225860 | Msa1267900 | 0.807467 | 4.983768e-50 | -8.615850e-47 |
| Msa1231820 | Msa1267900 | 0.833763 | 4.424831e-56 | -8.615850e-47 |
| Msa1236410 | Msa1267900 | 0.823747 | 1.172712e-53 | -8.615850e-47 |
| Msa1267900 | Msa1269480 | 0.805968 | 1.033362e-49 | -8.615850e-47 |
| Msa1267900 | Msa1274520 | 0.841439 | 4.748667e-58 | -8.615850e-47 |
| Msa1267900 | Msa1298370 | 0.829679 | 4.498295e-55 | -8.615850e-47 |
| Msa1267900 | Msa1300340 | 0.810547 | 1.091647e-50 | -8.615850e-47 |
| Msa1267900 | Msa1303240 | 0.821443 | 4.025800e-53 | -8.615850e-47 |
| Msa1267900 | Msa1303250 | 0.830550 | 2.756431e-55 | -8.615850e-47 |
| Msa1267900 | Msa1321050 | 0.813821 | 2.107716e-51 | -8.615850e-47 |
| Msa1267900 | Msa1328640 | 0.806534 | 7.849848e-50 | -8.615850e-47 |
| Msa1267900 | Msa1328710 | 0.829793 | 4.220381e-55 | -8.615850e-47 |
| Msa1267900 | Msa1341570 | 0.802161 | 6.396165e-49 | -8.615850e-47 |
| Msa1267900 | Msa1346280 | 0.804585 | 2.013051e-49 | -8.615850e-47 |
| Msa1267900 | Msa1353470 | 0.813313 | 2.727039e-51 | -8.615850e-47 |
| Msa1267900 | Msa1353980 | 0.803772 | 2.971366e-49 | -8.615850e-47 |
| Msa1267900 | Msa1356830 | 0.812872 | 3.407563e-51 | -8.615850e-47 |
| Msa1267900 | Msa1361400 | 0.818614 | 1.788439e-52 | -8.615850e-47 |
| Msa1267900 | Msa1361410 | 0.823082 | 1.677221e-53 | -8.615850e-47 |
| Msa1267900 | Msa1365350 | 0.814267 | 1.681010e-51 | -8.615850e-47 |
| Msa1267900 | Msa1373100 | 0.810255 | 1.262361e-50 | -8.615850e-47 |
| Msa1267900 | Msa1374040 | 0.811695 | 6.154633e-51 | -8.615850e-47 |
| Msa1267900 | Msa1374550 | 0.813087 | 3.057071e-51 | -8.615850e-47 |
| Msa1267900 | Msa1375560 | 0.807906 | 4.021427e-50 | -8.615850e-47 |
| Msa1267900 | Msa1402400 | 0.807633 | 4.594659e-50 | -8.615850e-47 |
| Msa1267900 | Msa1408620 | -0.821710 | 3.494390e-53 | -8.615850e-47 |
| Msa1267900 | Msa1422950 | 0.809985 | 1.443079e-50 | -8.615850e-47 |
| Msa1267900 | Msa1427200 | 0.812383 | 4.358225e-51 | -8.615850e-47 |
| Msa1267900 | Msa1440880 | 0.819840 | 9.400148e-53 | -8.615850e-47 |
| Msa1267900 | Msa1445190 | 0.806618 | 7.536332e-50 | -8.615850e-47 |
| Msa1267900 | Msa1446820 | 0.804971 | 1.671661e-49 | -8.615850e-47 |
| Msa1267900 | Msa1451160 | 0.831146 | 1.969312e-55 | -8.615850e-47 |
| Msa1267900 | Msa1466540 | 0.823680 | 1.215526e-53 | -8.615850e-47 |
| Msa0371170 | Msa1267900 | 0.817820 | 2.704348e-52 | -8.615850e-47 |
| Msa0385390 | Msa1267900 | 0.811101 | 8.286513e-51 | -8.615850e-47 |
| Msa0392490 | Msa1267900 | 0.806178 | 9.329706e-50 | -8.615850e-47 |
| Msa0415320 | Msa1267900 | 0.812278 | 4.595047e-51 | -8.615850e-47 |
| Msa0467430 | Msa1267900 | 0.804844 | 1.777101e-49 | -8.615850e-47 |
| Msa0475790 | Msa1267900 | 0.817979 | 2.489563e-52 | -8.615850e-47 |
| Msa0479170 | Msa1267900 | 0.809968 | 1.455277e-50 | -8.615850e-47 |
| Msa1005870 | Msa1267900 | 0.818030 | 2.424861e-52 | -8.615850e-47 |
| Msa1019000 | Msa1267900 | 0.804385 | 2.216301e-49 | -8.615850e-47 |
| Msa1019430 | Msa1267900 | 0.842242 | 2.913706e-58 | -8.615850e-47 |
| Msa1019470 | Msa1267900 | 0.861001 | 1.393990e-63 | -8.615850e-47 |
| Msa1024740 | Msa1267900 | 0.800236 | 1.584076e-48 | -8.615850e-47 |
| Msa1041670 | Msa1267900 | 0.803979 | 2.691592e-49 | -8.615850e-47 |
| Msa1044470 | Msa1267900 | 0.805400 | 1.359709e-49 | -8.615850e-47 |
| Msa1078170 | Msa1267900 | 0.828826 | 7.245503e-55 | -8.615850e-47 |
| Msa1092010 | Msa1267900 | 0.809833 | 1.556475e-50 | -8.615850e-47 |
| Msa1102770 | Msa1267900 | 0.827788 | 1.289280e-54 | -8.615850e-47 |
| Msa0243100 | Msa1267900 | 0.810448 | 1.146701e-50 | -8.615850e-47 |
| Msa0254790 | Msa1267900 | 0.808795 | 2.598890e-50 | -8.615850e-47 |
| Msa0258310 | Msa1267900 | 0.811490 | 6.819942e-51 | -8.615850e-47 |
| Msa0259500 | Msa1267900 | 0.815650 | 8.291017e-52 | -8.615850e-47 |
| Msa0261340 | Msa1267900 | 0.803227 | 3.854393e-49 | -8.615850e-47 |
| Msa0264400 | Msa1267900 | 0.814290 | 1.661400e-51 | -8.615850e-47 |
| Msa0265850 | Msa1267900 | 0.807553 | 4.777947e-50 | -8.615850e-47 |
| Msa0277180 | Msa1267900 | 0.818327 | 2.076995e-52 | -8.615850e-47 |
| Msa0287650 | Msa1267900 | 0.808394 | 3.164413e-50 | -8.615850e-47 |
| Msa0287740 | Msa1267900 | 0.812613 | 3.881582e-51 | -8.615850e-47 |
| Msa0297790 | Msa1267900 | 0.806981 | 6.316142e-50 | -8.615850e-47 |
| Msa0300270 | Msa1267900 | 0.811587 | 6.496988e-51 | -8.615850e-47 |
| Msa0300320 | Msa1267900 | 0.804690 | 1.914028e-49 | -8.615850e-47 |
| Msa0300690 | Msa1267900 | 0.821788 | 3.352108e-53 | -8.615850e-47 |
| Msa0302160 | Msa1267900 | 0.802079 | 6.651596e-49 | -8.615850e-47 |
| Msa0305700 | Msa1267900 | 0.813198 | 2.889742e-51 | -8.615850e-47 |
| Msa0306370 | Msa1267900 | 0.804734 | 1.874250e-49 | -8.615850e-47 |
| Msa0316810 | Msa1267900 | 0.829833 | 4.124795e-55 | -8.615850e-47 |
| Msa0333920 | Msa1267900 | 0.801869 | 7.346728e-49 | -8.615850e-47 |
| Msa0334040 | Msa1267900 | 0.801632 | 8.217210e-49 | -8.615850e-47 |
| Msa0335800 | Msa1267900 | 0.814281 | 1.668639e-51 | -8.615850e-47 |
| Msa0339490 | Msa1267900 | 0.803831 | 2.889149e-49 | -8.615850e-47 |
| Msa0339650 | Msa1267900 | 0.803696 | 3.082089e-49 | -8.615850e-47 |
| Msa0341540 | Msa1267900 | 0.813113 | 3.016156e-51 | -8.615850e-47 |
| Msa0345330 | Msa1267900 | 0.815553 | 8.717491e-52 | -8.615850e-47 |
| Msa0345410 | Msa1267900 | 0.808529 | 2.962247e-50 | -8.615850e-47 |
| Msa0348880 | Msa1267900 | 0.820088 | 8.251171e-53 | -8.615850e-47 |
| Msa1123380 | Msa1267900 | 0.823923 | 1.066239e-53 | -8.615850e-47 |
| Msa1125940 | Msa1267900 | 0.837325 | 5.556421e-57 | -8.615850e-47 |
| Msa1132840 | Msa1267900 | 0.810856 | 9.359244e-51 | -8.615850e-47 |
| Msa1137570 | Msa1267900 | 0.807787 | 4.262672e-50 | -8.615850e-47 |
| Msa1139890 | Msa1267900 | 0.815108 | 1.094455e-51 | -8.615850e-47 |
| Msa1140210 | Msa1267900 | 0.807430 | 5.073795e-50 | -8.615850e-47 |
| Msa1157870 | Msa1267900 | 0.812478 | 4.154879e-51 | -8.615850e-47 |
| Msa1166560 | Msa1267900 | 0.807328 | 5.333941e-50 | -8.615850e-47 |
| Msa1174230 | Msa1267900 | 0.901420 | 2.728370e-78 | -8.615850e-47 |
| Msa1189070 | Msa1267900 | 0.800081 | 1.703507e-48 | -8.615850e-47 |
| Msa1193290 | Msa1267900 | 0.819907 | 9.074262e-53 | -8.615850e-47 |
| Msa1198250 | Msa1267900 | 0.825704 | 4.053103e-54 | -8.615850e-47 |
| Msa1199570 | Msa1267900 | 0.824490 | 7.846674e-54 | -8.615850e-47 |
| Msa1208160 | Msa1267900 | 0.838338 | 3.051111e-57 | -8.615850e-47 |
| Msa1208430 | Msa1267900 | 0.829854 | 4.078407e-55 | -8.615850e-47 |
| Msa1214890 | Msa1267900 | 0.803607 | 3.215709e-49 | -8.615850e-47 |
| Msa1221060 | Msa1267900 | 0.824433 | 8.092279e-54 | -8.615850e-47 |
| Msa0484380 | Msa1267900 | 0.813915 | 2.010076e-51 | -8.615850e-47 |
| Msa0487630 | Msa1267900 | 0.807580 | 4.715798e-50 | -8.615850e-47 |
| Msa0504610 | Msa1267900 | 0.807094 | 5.979379e-50 | -8.615850e-47 |
| Msa0513160 | Msa1267900 | 0.804177 | 2.447782e-49 | -8.615850e-47 |
| Msa0523000 | Msa1267900 | 0.818337 | 2.066659e-52 | -8.615850e-47 |
| Msa0532970 | Msa1267900 | 0.817649 | 2.955962e-52 | -8.615850e-47 |
| Msa0547230 | Msa1267900 | 0.839903 | 1.199035e-57 | -8.615850e-47 |
| Msa0557070 | Msa1267900 | 0.800896 | 1.162376e-48 | -8.615850e-47 |
| Msa0565000 | Msa1267900 | 0.907011 | 8.032232e-81 | -8.615850e-47 |
| Msa0571130 | Msa1267900 | 0.809946 | 1.471725e-50 | -8.615850e-47 |
| Msa0580370 | Msa1267900 | 0.807735 | 4.372361e-50 | -8.615850e-47 |
| Msa0589510 | Msa1267900 | 0.804616 | 1.983035e-49 | -8.615850e-47 |
| Msa0844570 | Msa1267900 | 0.803025 | 4.243761e-49 | -8.615850e-47 |
| Msa0861510 | Msa1267900 | 0.815678 | 8.175958e-52 | -8.615850e-47 |
| Msa0861600 | Msa1267900 | 0.810271 | 1.252303e-50 | -8.615850e-47 |
| Msa0861870 | Msa1267900 | 0.805030 | 1.625187e-49 | -8.615850e-47 |
| Msa0863010 | Msa1267900 | 0.804090 | 2.552565e-49 | -8.615850e-47 |
| Msa0869680 | Msa1267900 | 0.824445 | 8.040247e-54 | -8.615850e-47 |
| Msa0880450 | Msa1267900 | 0.813340 | 2.689996e-51 | -8.615850e-47 |
| Msa0883060 | Msa1267900 | 0.802942 | 4.415152e-49 | -8.615850e-47 |
| Msa0896410 | Msa1267900 | 0.834624 | 2.691716e-56 | -8.615850e-47 |
| Msa0896540 | Msa1267900 | 0.813686 | 2.257430e-51 | -8.615850e-47 |
| Msa0898750 | Msa1267900 | 0.807411 | 5.121646e-50 | -8.615850e-47 |
| Msa0903070 | Msa1267900 | 0.860936 | 1.458399e-63 | -8.615850e-47 |
| Msa0910430 | Msa1267900 | 0.851335 | 9.489465e-61 | -8.615850e-47 |
| Msa0924470 | Msa1267900 | 0.800479 | 1.414002e-48 | -8.615850e-47 |
| Msa0935470 | Msa1267900 | 0.820703 | 5.960746e-53 | -8.615850e-47 |
| Msa0941190 | Msa1267900 | 0.802082 | 6.640838e-49 | -8.615850e-47 |
| Msa0945110 | Msa1267900 | 0.804821 | 1.797394e-49 | -8.615850e-47 |
| Msa0948290 | Msa1267900 | 0.824783 | 6.695802e-54 | -8.615850e-47 |
| Msa0964310 | Msa1267900 | 0.800677 | 1.288453e-48 | -8.615850e-47 |
| Msa0967380 | Msa1267900 | 0.831121 | 1.997141e-55 | -8.615850e-47 |
| Msa0967870 | Msa1267900 | 0.806196 | 9.252406e-50 | -8.615850e-47 |
| Msa0969200 | Msa1267900 | 0.857001 | 2.197760e-62 | -8.615850e-47 |
| Msa0969520 | Msa1267900 | 0.832108 | 1.141164e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267900 | MtrunA17_Chr8g0379151 | 93.902 | 82 | 5 | 0 | 14 | 95 | 299 | 380 | 3.45e-52 | 167 |
| Msa1267900 | MtrunA17_Chr2g0283741 | 53.086 | 81 | 36 | 1 | 8 | 88 | 281 | 359 | 1.10e-22 | 89.7 |
| Msa1267900 | MtrunA17_Chr2g0283901 | 43.023 | 86 | 46 | 2 | 3 | 88 | 274 | 356 | 1.39e-17 | 75.9 |
| Msa1267900 | MtrunA17_Chr3g0142071 | 58.621 | 58 | 22 | 1 | 33 | 90 | 303 | 358 | 1.59e-16 | 72.8 |
| Msa1267900 | MtrunA17_Chr7g0248371 | 45.455 | 88 | 38 | 5 | 1 | 87 | 53 | 131 | 1.14e-13 | 62.4 |
| Msa1267900 | MtrunA17_Chr4g0041481 | 43.902 | 82 | 40 | 3 | 5 | 86 | 263 | 338 | 4.57e-13 | 63.2 |
| Msa1267900 | MtrunA17_Chr4g0053311 | 48.387 | 62 | 31 | 1 | 33 | 94 | 288 | 348 | 6.87e-13 | 62.4 |
| Msa1267900 | MtrunA17_Chr4g0041521 | 43.902 | 82 | 40 | 3 | 5 | 86 | 263 | 338 | 1.25e-12 | 61.6 |
| Msa1267900 | MtrunA17_Chr3g0116551 | 42.857 | 84 | 41 | 4 | 8 | 90 | 270 | 347 | 1.39e-12 | 61.6 |
| Msa1267900 | MtrunA17_Chr7g0248391 | 45.455 | 88 | 38 | 4 | 1 | 87 | 259 | 337 | 1.73e-12 | 61.2 |
| Msa1267900 | MtrunA17_Chr2g0325121 | 42.683 | 82 | 41 | 3 | 7 | 88 | 262 | 337 | 2.26e-12 | 60.8 |
| Msa1267900 | MtrunA17_Chr7g0248661 | 43.210 | 81 | 39 | 4 | 8 | 87 | 2 | 76 | 5.90e-12 | 56.2 |
| Msa1267900 | MtrunA17_Chr1g0208261 | 49.091 | 55 | 27 | 1 | 34 | 88 | 343 | 396 | 7.44e-12 | 59.7 |
| Msa1267900 | MtrunA17_Chr4g0040851 | 39.506 | 81 | 43 | 3 | 7 | 87 | 285 | 359 | 8.95e-12 | 59.3 |
| Msa1267900 | MtrunA17_Chr1g0153011 | 51.852 | 54 | 25 | 1 | 35 | 88 | 291 | 343 | 9.37e-12 | 59.3 |
| Msa1267900 | MtrunA17_Chr4g0041471 | 42.857 | 84 | 41 | 4 | 5 | 87 | 264 | 341 | 9.90e-12 | 59.3 |
| Msa1267900 | MtrunA17_Chr3g0134231 | 53.704 | 54 | 24 | 1 | 35 | 88 | 310 | 362 | 1.21e-11 | 58.9 |
| Msa1267900 | MtrunA17_Chr4g0060251 | 40.506 | 79 | 42 | 2 | 8 | 86 | 270 | 343 | 2.46e-11 | 58.2 |
| Msa1267900 | MtrunA17_Chr4g0041061 | 40.506 | 79 | 42 | 2 | 8 | 86 | 270 | 343 | 5.50e-11 | 57.0 |
| Msa1267900 | MtrunA17_Chr4g0040881 | 40.506 | 79 | 42 | 2 | 8 | 86 | 270 | 343 | 7.38e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267900 | AT1G29110.1 | 44.444 | 81 | 40 | 2 | 7 | 87 | 258 | 333 | 1.33e-18 | 78.6 |
| Msa1267900 | AT4G23520.1 | 56.452 | 62 | 25 | 2 | 33 | 94 | 297 | 356 | 8.99e-17 | 73.9 |
| Msa1267900 | AT1G09850.1 | 45.977 | 87 | 41 | 3 | 3 | 89 | 255 | 335 | 2.51e-16 | 72.8 |
| Msa1267900 | AT3G19400.1 | 46.032 | 63 | 32 | 1 | 33 | 95 | 296 | 356 | 2.55e-15 | 69.7 |
| Msa1267900 | AT2G27420.1 | 43.182 | 88 | 43 | 4 | 1 | 87 | 266 | 347 | 2.60e-14 | 67.0 |
| Msa1267900 | AT4G35350.1 | 56.364 | 55 | 22 | 1 | 35 | 89 | 302 | 354 | 4.95e-14 | 66.2 |
| Msa1267900 | AT3G43960.1 | 51.562 | 64 | 28 | 2 | 33 | 95 | 293 | 354 | 6.72e-14 | 65.9 |
| Msa1267900 | AT1G29080.1 | 41.975 | 81 | 41 | 3 | 8 | 87 | 270 | 345 | 1.01e-13 | 65.1 |
| Msa1267900 | AT4G11320.2 | 41.935 | 93 | 45 | 4 | 4 | 93 | 279 | 365 | 1.06e-13 | 65.1 |
| Msa1267900 | AT4G11320.1 | 41.935 | 93 | 45 | 4 | 4 | 93 | 279 | 365 | 1.06e-13 | 65.1 |
| Msa1267900 | AT1G20850.1 | 56.364 | 55 | 22 | 1 | 35 | 89 | 303 | 355 | 3.32e-13 | 63.9 |
| Msa1267900 | AT5G43060.1 | 51.786 | 56 | 25 | 1 | 33 | 88 | 301 | 354 | 4.28e-13 | 63.5 |
| Msa1267900 | AT4G11310.1 | 40.698 | 86 | 45 | 3 | 8 | 93 | 279 | 358 | 6.08e-13 | 63.2 |
| Msa1267900 | AT3G48340.1 | 49.180 | 61 | 29 | 1 | 35 | 95 | 293 | 351 | 9.61e-13 | 62.4 |
| Msa1267900 | AT1G47128.1 | 53.571 | 56 | 24 | 1 | 33 | 88 | 300 | 353 | 1.13e-12 | 62.4 |
| Msa1267900 | AT2G34080.1 | 43.210 | 81 | 39 | 4 | 8 | 87 | 270 | 344 | 2.38e-12 | 61.2 |
| Msa1267900 | AT3G19390.1 | 46.552 | 58 | 29 | 1 | 33 | 90 | 293 | 348 | 4.05e-12 | 60.8 |
| Msa1267900 | AT4G36880.1 | 40.741 | 81 | 43 | 3 | 8 | 88 | 287 | 362 | 4.28e-12 | 60.8 |
| Msa1267900 | AT5G50260.1 | 44.828 | 58 | 29 | 2 | 34 | 90 | 290 | 345 | 8.44e-12 | 59.7 |
| Msa1267900 | AT3G48350.1 | 49.123 | 57 | 26 | 2 | 33 | 88 | 290 | 344 | 1.75e-11 | 58.9 |
| Msa1267900 | AT1G29090.1 | 40.741 | 81 | 42 | 3 | 8 | 87 | 279 | 354 | 2.21e-11 | 58.5 |
| Msa1267900 | AT3G49340.1 | 35.632 | 87 | 51 | 2 | 1 | 87 | 259 | 340 | 3.72e-11 | 58.2 |
| Msa1267900 | AT5G60360.1 | 35.802 | 81 | 46 | 1 | 7 | 87 | 282 | 356 | 5.80e-11 | 57.4 |
| Msa1267900 | AT1G06260.1 | 47.273 | 55 | 27 | 1 | 34 | 88 | 291 | 343 | 7.50e-11 | 57.0 |
Find 23 sgRNAs with CRISPR-Local
Find 28 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGAATGGTGAAGACTAT+TGG | 0.304070 | 8_3:+239371 | Msa1267900:CDS |
| GTTATTGAAGATTGGCCTTA+TGG | 0.314718 | 8_3:+239457 | Msa1267900:CDS |
| ATCTTTCAAAAGGTTGAATC+TGG | 0.348902 | 8_3:+239178 | Msa1267900:CDS |
| AAAGGAATGTTATTGAAGAT+TGG | 0.377330 | 8_3:+239449 | Msa1267900:CDS |
| TGACTAAAATAGGGAGTCTA+TGG | 0.386085 | 8_3:+239283 | Msa1267900:intron |
| AAACTCATGGGGAAAAGATT+GGG | 0.397399 | 8_3:+239402 | Msa1267900:CDS |
| AAGGTTACTTGTTTATCAAA+AGG | 0.408095 | 8_3:+239431 | Msa1267900:CDS |
| TCAAGGAATGCAAATCTTGT+TGG | 0.438289 | 8_3:+239328 | Msa1267900:CDS |
| AAAACTCATGGGGAAAAGAT+TGG | 0.442756 | 8_3:+239401 | Msa1267900:CDS |
| TCTAATCGTGGGTTATGATT+CGG | 0.463790 | 8_3:+239351 | Msa1267900:CDS |
| GTGTCGATATATCTTTCAAA+AGG | 0.514366 | 8_3:+239168 | Msa1267900:CDS |
| GGAAAAGATTGGGGAGAGAA+AGG | 0.518533 | 8_3:+239412 | Msa1267900:CDS |
| CTTTATCTTCAGCCATGTAG+TGG | 0.532318 | 8_3:+239524 | Msa1267900:CDS |
| TTGATTGCACATACACCATA+AGG | 0.533070 | 8_3:-239472 | None:intergenic |
| GTGGGTTATGATTCGGTGAA+TGG | 0.534697 | 8_3:+239358 | Msa1267900:CDS |
| TGCTCTAACCAACCACTACA+TGG | 0.537247 | 8_3:-239536 | None:intergenic |
| AATCTTGTTGGTCTAATCGT+GGG | 0.553988 | 8_3:+239340 | Msa1267900:CDS |
| AAATCTTGTTGGTCTAATCG+TGG | 0.581439 | 8_3:+239339 | Msa1267900:CDS |
| CTAAAATAGGGAGTCTATGG+TGG | 0.604269 | 8_3:+239286 | Msa1267900:intron |
| AACTCATGGGGAAAAGATTG+GGG | 0.629466 | 8_3:+239403 | Msa1267900:CDS |
| TGTGCAATCAATGCTGCGGT+TGG | 0.646120 | 8_3:+239484 | Msa1267900:CDS |
| TAAAGTTTAGTGCTAATGCG+AGG | 0.703141 | 8_3:+239146 | None:intergenic |
| TGTATGTGCAATCAATGCTG+CGG | 0.774207 | 8_3:+239480 | Msa1267900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTGTTTTGACTAAAAT+AGG | + | chr8_3:239273-239292 | Msa1267900:intron | 20.0% |
| !!! | TTGTTGTTTTGACTAAAATA+GGG | + | chr8_3:239274-239293 | Msa1267900:intron | 20.0% |
| ! | AAGGTTACTTGTTTATCAAA+AGG | + | chr8_3:239431-239450 | Msa1267900:CDS | 25.0% |
| ! | AAAGGAATGTTATTGAAGAT+TGG | + | chr8_3:239449-239468 | Msa1267900:CDS | 25.0% |
| !!! | AAGATAAAGCTGTTTTGATT+GGG | - | chr8_3:239513-239532 | None:intergenic | 25.0% |
| ! | GTGTCGATATATCTTTCAAA+AGG | + | chr8_3:239168-239187 | Msa1267900:CDS | 30.0% |
| ATCTTTCAAAAGGTTGAATC+TGG | + | chr8_3:239178-239197 | Msa1267900:CDS | 30.0% | |
| AGAACTGCAAAAAAGATTCA+AGG | + | chr8_3:239311-239330 | Msa1267900:CDS | 30.0% | |
| ATTGGATTGTGAAAAACTCA+TGG | + | chr8_3:239389-239408 | Msa1267900:CDS | 30.0% | |
| TTGGATTGTGAAAAACTCAT+GGG | + | chr8_3:239390-239409 | Msa1267900:CDS | 30.0% | |
| !!! | GAAGATAAAGCTGTTTTGAT+TGG | - | chr8_3:239514-239533 | None:intergenic | 30.0% |
| TGACTAAAATAGGGAGTCTA+TGG | + | chr8_3:239283-239302 | Msa1267900:intron | 35.0% | |
| TCAAGGAATGCAAATCTTGT+TGG | + | chr8_3:239328-239347 | Msa1267900:CDS | 35.0% | |
| ! | AAATCTTGTTGGTCTAATCG+TGG | + | chr8_3:239339-239358 | Msa1267900:CDS | 35.0% |
| ! | AATCTTGTTGGTCTAATCGT+GGG | + | chr8_3:239340-239359 | Msa1267900:CDS | 35.0% |
| ! | TCTAATCGTGGGTTATGATT+CGG | + | chr8_3:239351-239370 | Msa1267900:CDS | 35.0% |
| TGGATTGTGAAAAACTCATG+GGG | + | chr8_3:239391-239410 | Msa1267900:CDS | 35.0% | |
| AAAACTCATGGGGAAAAGAT+TGG | + | chr8_3:239401-239420 | Msa1267900:CDS | 35.0% | |
| AAACTCATGGGGAAAAGATT+GGG | + | chr8_3:239402-239421 | Msa1267900:CDS | 35.0% | |
| !! | GTTATTGAAGATTGGCCTTA+TGG | + | chr8_3:239457-239476 | Msa1267900:CDS | 35.0% |
| TTGATTGCACATACACCATA+AGG | - | chr8_3:239475-239494 | None:intergenic | 35.0% | |
| CTAAAATAGGGAGTCTATGG+TGG | + | chr8_3:239286-239305 | Msa1267900:intron | 40.0% | |
| AACTCATGGGGAAAAGATTG+GGG | + | chr8_3:239403-239422 | Msa1267900:CDS | 40.0% | |
| TGTATGTGCAATCAATGCTG+CGG | + | chr8_3:239480-239499 | Msa1267900:CDS | 40.0% | |
| !! | GTGGGTTATGATTCGGTGAA+TGG | + | chr8_3:239358-239377 | Msa1267900:CDS | 45.0% |
| CGGTGAATGGTGAAGACTAT+TGG | + | chr8_3:239371-239390 | Msa1267900:CDS | 45.0% | |
| GGAAAAGATTGGGGAGAGAA+AGG | + | chr8_3:239412-239431 | Msa1267900:CDS | 45.0% | |
| TGTGCAATCAATGCTGCGGT+TGG | + | chr8_3:239484-239503 | Msa1267900:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 239161 | 239543 | 239161 | ID=Msa1267900;Name=Msa1267900 |
| chr8_3 | mRNA | 239161 | 239543 | 239161 | ID=Msa1267900-mRNA-1;Parent=Msa1267900;Name=Msa1267900-mRNA-1;_AED=0.11;_eAED=0.19;_QI=0|0|0|0.5|1|1|2|0|95 |
| chr8_3 | exon | 239161 | 239199 | 239161 | ID=Msa1267900-mRNA-1:exon:45;Parent=Msa1267900-mRNA-1 |
| chr8_3 | exon | 239295 | 239543 | 239295 | ID=Msa1267900-mRNA-1:exon:46;Parent=Msa1267900-mRNA-1 |
| chr8_3 | CDS | 239161 | 239199 | 239161 | ID=Msa1267900-mRNA-1:cds;Parent=Msa1267900-mRNA-1 |
| chr8_3 | CDS | 239295 | 239543 | 239295 | ID=Msa1267900-mRNA-1:cds;Parent=Msa1267900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
