Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581060 | XP_003625919.2 | 96.284 | 296 | 6 | 1 | 6 | 301 | 51 | 341 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581060 | sp|Q9C942|CSE_ARATH | 40.870 | 230 | 135 | 1 | 16 | 244 | 93 | 322 | 3.45e-56 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581060 | G7KRW6 | 96.284 | 296 | 6 | 1 | 6 | 301 | 51 | 341 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044160 | Msa0581060 | 0.817711 | 2.862156e-52 | -8.615850e-47 |
| Msa0139500 | Msa0581060 | 0.803014 | 4.265900e-49 | -8.615850e-47 |
| Msa0183710 | Msa0581060 | 0.804772 | 1.839490e-49 | -8.615850e-47 |
| Msa0437480 | Msa0581060 | 0.809506 | 1.829387e-50 | -8.615850e-47 |
| Msa0437520 | Msa0581060 | 0.817637 | 2.974049e-52 | -8.615850e-47 |
| Msa0440350 | Msa0581060 | 0.804732 | 1.875233e-49 | -8.615850e-47 |
| Msa0313900 | Msa0581060 | 0.805019 | 1.633631e-49 | -8.615850e-47 |
| Msa0354840 | Msa0581060 | 0.810868 | 9.304063e-51 | -8.615850e-47 |
| Msa0581060 | Msa0865420 | 0.810019 | 1.419075e-50 | -8.615850e-47 |
| Msa0581060 | Msa1022420 | 0.804775 | 1.837454e-49 | -8.615850e-47 |
| Msa0581060 | Msa1044250 | 0.833713 | 4.552330e-56 | -8.615850e-47 |
| Msa0581060 | Msa1081970 | 0.963454 | 4.182869e-122 | -8.615850e-47 |
| Msa0581060 | Msa1106590 | 0.803349 | 3.636525e-49 | -8.615850e-47 |
| Msa0581060 | Msa1165760 | 0.942112 | 1.278862e-101 | -8.615850e-47 |
| Msa0581060 | Msa1366610 | 0.980599 | 1.361456e-150 | -8.615850e-47 |
| Msa0581060 | Msa1433360 | 0.815350 | 9.668405e-52 | -8.615850e-47 |
| Msa0581060 | Msa1447100 | 0.800614 | 1.327086e-48 | -8.615850e-47 |
| Msa0581060 | Msa1449900 | 0.804973 | 1.670491e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581060 | MtrunA17_Chr7g0269371 | 96.284 | 296 | 6 | 1 | 6 | 301 | 51 | 341 | 0.0 | 588 |
| Msa0581060 | MtrunA17_Chr1g0195501 | 72.549 | 255 | 69 | 1 | 6 | 259 | 52 | 306 | 1.92e-137 | 391 |
| Msa0581060 | MtrunA17_Chr1g0212901 | 53.814 | 236 | 109 | 0 | 10 | 245 | 58 | 293 | 9.02e-96 | 285 |
| Msa0581060 | MtrunA17_Chr6g0460121 | 49.789 | 237 | 119 | 0 | 10 | 246 | 65 | 301 | 2.47e-83 | 253 |
| Msa0581060 | MtrunA17_Chr6g0457581 | 49.789 | 237 | 119 | 0 | 10 | 246 | 102 | 338 | 8.93e-83 | 253 |
| Msa0581060 | MtrunA17_Chr7g0215451 | 47.660 | 235 | 123 | 0 | 10 | 244 | 103 | 337 | 2.99e-79 | 244 |
| Msa0581060 | MtrunA17_Chr1g0209741 | 44.444 | 234 | 130 | 0 | 10 | 243 | 142 | 375 | 1.81e-74 | 233 |
| Msa0581060 | MtrunA17_Chr5g0423541 | 44.538 | 238 | 132 | 0 | 10 | 247 | 156 | 393 | 4.50e-73 | 230 |
| Msa0581060 | MtrunA17_Chr4g0047891 | 46.809 | 235 | 125 | 0 | 9 | 243 | 87 | 321 | 3.93e-69 | 218 |
| Msa0581060 | MtrunA17_Chr1g0199771 | 38.956 | 249 | 148 | 4 | 8 | 254 | 78 | 324 | 7.18e-56 | 183 |
| Msa0581060 | MtrunA17_Chr4g0071671 | 37.975 | 237 | 146 | 1 | 9 | 244 | 77 | 313 | 2.07e-54 | 179 |
| Msa0581060 | MtrunA17_Chr6g0484431 | 44.886 | 176 | 96 | 1 | 10 | 184 | 106 | 281 | 1.09e-46 | 158 |
| Msa0581060 | MtrunA17_Chr3g0140391 | 32.068 | 237 | 149 | 6 | 10 | 243 | 142 | 369 | 4.71e-31 | 119 |
| Msa0581060 | MtrunA17_Chr6g0479331 | 35.217 | 230 | 139 | 6 | 16 | 243 | 167 | 388 | 2.44e-30 | 117 |
| Msa0581060 | MtrunA17_Chr6g0484421 | 50.000 | 64 | 32 | 0 | 185 | 248 | 1 | 64 | 4.25e-17 | 74.3 |
| Msa0581060 | MtrunA17_Chr1g0209761 | 50.000 | 66 | 33 | 0 | 178 | 243 | 12 | 77 | 6.72e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581060 | AT3G62860.2 | 67.677 | 297 | 93 | 2 | 6 | 300 | 9 | 304 | 3.80e-154 | 433 |
| Msa0581060 | AT3G62860.1 | 67.677 | 297 | 93 | 2 | 6 | 300 | 52 | 347 | 5.37e-153 | 432 |
| Msa0581060 | AT2G47630.2 | 66.221 | 299 | 93 | 2 | 6 | 299 | 9 | 304 | 5.84e-148 | 417 |
| Msa0581060 | AT2G47630.3 | 66.221 | 299 | 93 | 2 | 6 | 299 | 29 | 324 | 8.70e-148 | 418 |
| Msa0581060 | AT2G47630.1 | 66.221 | 299 | 93 | 2 | 6 | 299 | 54 | 349 | 6.65e-147 | 417 |
| Msa0581060 | AT2G39420.1 | 60.000 | 235 | 94 | 0 | 10 | 244 | 59 | 293 | 3.06e-101 | 300 |
| Msa0581060 | AT3G55180.1 | 56.379 | 243 | 106 | 0 | 5 | 247 | 49 | 291 | 1.15e-98 | 293 |
| Msa0581060 | AT2G39400.1 | 54.733 | 243 | 110 | 0 | 7 | 249 | 50 | 292 | 4.20e-96 | 286 |
| Msa0581060 | AT2G39410.2 | 55.462 | 238 | 106 | 0 | 10 | 247 | 59 | 296 | 7.15e-96 | 286 |
| Msa0581060 | AT3G55190.1 | 46.617 | 266 | 135 | 2 | 10 | 274 | 59 | 318 | 1.43e-82 | 252 |
| Msa0581060 | AT5G16120.3 | 46.939 | 245 | 130 | 0 | 10 | 254 | 104 | 348 | 5.84e-78 | 241 |
| Msa0581060 | AT5G16120.1 | 46.939 | 245 | 130 | 0 | 10 | 254 | 104 | 348 | 5.84e-78 | 241 |
| Msa0581060 | AT5G16120.2 | 46.939 | 245 | 130 | 0 | 10 | 254 | 122 | 366 | 1.14e-77 | 241 |
| Msa0581060 | AT5G16120.4 | 46.939 | 245 | 130 | 0 | 10 | 254 | 136 | 380 | 1.38e-77 | 241 |
| Msa0581060 | AT1G11090.1 | 47.660 | 235 | 123 | 0 | 9 | 243 | 78 | 312 | 3.80e-76 | 236 |
| Msa0581060 | AT1G77420.1 | 42.017 | 238 | 138 | 0 | 10 | 247 | 143 | 380 | 4.43e-67 | 214 |
| Msa0581060 | AT2G39400.2 | 53.801 | 171 | 79 | 0 | 8 | 178 | 51 | 221 | 3.69e-63 | 200 |
| Msa0581060 | AT1G52760.1 | 40.870 | 230 | 135 | 1 | 16 | 244 | 93 | 322 | 3.51e-57 | 187 |
| Msa0581060 | AT5G14980.1 | 38.723 | 235 | 142 | 2 | 9 | 242 | 79 | 312 | 1.66e-55 | 183 |
| Msa0581060 | AT5G19290.1 | 34.568 | 243 | 157 | 2 | 9 | 250 | 80 | 321 | 5.99e-50 | 168 |
| Msa0581060 | AT1G73480.1 | 33.054 | 239 | 148 | 6 | 10 | 245 | 233 | 462 | 2.23e-33 | 127 |
| Msa0581060 | AT1G18360.1 | 32.773 | 238 | 150 | 5 | 10 | 245 | 152 | 381 | 3.98e-31 | 120 |
| Msa0581060 | AT5G11650.1 | 33.333 | 237 | 144 | 7 | 10 | 242 | 149 | 375 | 2.47e-29 | 115 |
Find 62 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATGCCCTGCTTACTTC+TGG | 0.212230 | 4_1:-86387969 | None:intergenic |
| TTCAGTTCTCCAAGAGTATA+AGG | 0.225869 | 4_1:+86386609 | Msa0581060:intron |
| TACACCATACACAGCATATT+TGG | 0.251718 | 4_1:-86386404 | None:intergenic |
| TGCTGGTTCTTAACATTTCT+AGG | 0.256347 | 4_1:-86387241 | None:intergenic |
| GGTTTATCTCTAGCTAATTA+TGG | 0.299650 | 4_1:+86386337 | Msa0581060:five_prime_UTR |
| AAACCTCACCCTTTCTCGTT+TGG | 0.334146 | 4_1:-86387038 | None:intergenic |
| TGCATAGTTAACCTTGTATA+AGG | 0.346053 | 4_1:-86387279 | None:intergenic |
| TCGTTTGGCCGGATCTTTGA+AGG | 0.358443 | 4_1:-86387023 | None:intergenic |
| GTTAAACCATGCCACATTCC+AGG | 0.412914 | 4_1:-86388032 | None:intergenic |
| TCAGTTCTCCAAGAGTATAA+GGG | 0.415803 | 4_1:+86386610 | Msa0581060:intron |
| ATAATGCCCTGCTTACTTCT+GGG | 0.425265 | 4_1:-86387968 | None:intergenic |
| TCATGGTTACAAGTCTCAAT+TGG | 0.427472 | 4_1:-86388152 | None:intergenic |
| ACATCATGAACCTACATTCA+TGG | 0.434009 | 4_1:-86388326 | None:intergenic |
| AGACTATGAAACAATCTCAT+AGG | 0.443501 | 4_1:+86388210 | Msa0581060:CDS |
| GTTCTTGTATGGAGAGTCCA+TGG | 0.446963 | 4_1:+86386642 | Msa0581060:CDS |
| GAAATTGATGACATCCTTTG+TGG | 0.451223 | 4_1:-86386999 | None:intergenic |
| AATTGGATGTGTAGAATCAT+AGG | 0.453394 | 4_1:-86388135 | None:intergenic |
| GCTGGTTCTTAACATTTCTA+GGG | 0.456674 | 4_1:-86387240 | None:intergenic |
| CTCACCCTTTCTCGTTTGGC+CGG | 0.464749 | 4_1:-86387034 | None:intergenic |
| CAATTTCGCCTTCAAAGATC+CGG | 0.473542 | 4_1:+86387015 | Msa0581060:CDS |
| GGAAAAGCTAGGTTCTTGTA+TGG | 0.474126 | 4_1:+86386631 | Msa0581060:CDS |
| AAGATCCGGCCAAACGAGAA+AGG | 0.479104 | 4_1:+86387029 | Msa0581060:CDS |
| AGTTATCTTTGTGGCTTGAA+AGG | 0.484287 | 4_1:+86388239 | Msa0581060:CDS |
| GCTAATTATGGTAGCATGAT+GGG | 0.487505 | 4_1:+86386349 | Msa0581060:exon |
| TGACAGACCCAGAAGTAAGC+AGG | 0.496194 | 4_1:+86387961 | Msa0581060:CDS |
| CCTTGTCGCACCCATGTGTA+AGG | 0.496565 | 4_1:+86386723 | Msa0581060:CDS |
| GTCTTTGCTGATGATACAAC+TGG | 0.500765 | 4_1:-86388191 | None:intergenic |
| AGCTAATTATGGTAGCATGA+TGG | 0.501791 | 4_1:+86386348 | Msa0581060:exon |
| AGAATCATAGGCAGCATTGT+TGG | 0.502217 | 4_1:-86388123 | None:intergenic |
| GTGGGAACTATCTTCCACTT+TGG | 0.507430 | 4_1:-86386980 | None:intergenic |
| ATGTGGCATGGTTTAACATC+TGG | 0.519462 | 4_1:+86388038 | Msa0581060:CDS |
| TGATATACCAGGACAAGCCC+AGG | 0.533416 | 4_1:+86387207 | Msa0581060:CDS |
| AGATCCGGCCAAACGAGAAA+GGG | 0.539898 | 4_1:+86387030 | Msa0581060:CDS |
| AAATTGATGACATCCTTTGT+GGG | 0.543046 | 4_1:-86386998 | None:intergenic |
| GGTGTCTTCAAGATTCATGC+TGG | 0.560620 | 4_1:-86387258 | None:intergenic |
| TCTTGAAGACACCTTATACA+AGG | 0.565278 | 4_1:+86387268 | Msa0581060:CDS |
| TTAAACCATGCCACATTCCA+GGG | 0.567753 | 4_1:-86388031 | None:intergenic |
| TACAACGTGTACCTTACACA+TGG | 0.572631 | 4_1:-86386734 | None:intergenic |
| GACAGACCCAGAAGTAAGCA+GGG | 0.576720 | 4_1:+86387962 | Msa0581060:CDS |
| TGTGCCAAATATGCTGTGTA+TGG | 0.584688 | 4_1:+86386400 | Msa0581060:CDS |
| AAGAGTATAAGGGAAAAGCT+AGG | 0.585965 | 4_1:+86386620 | Msa0581060:CDS |
| TAGACTAACTGCTCCACCCA+TGG | 0.587925 | 4_1:-86386659 | None:intergenic |
| TTTCATTCTAATTTGCTGAG+TGG | 0.595665 | 4_1:-86388277 | None:intergenic |
| TTCTTGTATGGAGAGTCCAT+GGG | 0.602502 | 4_1:+86386643 | Msa0581060:CDS |
| GAAGGACATGGACAATCTGA+AGG | 0.609980 | 4_1:+86386433 | Msa0581060:CDS |
| TTGTATGGAGAGTCCATGGG+TGG | 0.611978 | 4_1:+86386646 | Msa0581060:CDS |
| TTGAAGATATCATACCAAAG+TGG | 0.612746 | 4_1:+86386966 | Msa0581060:CDS |
| TTAAATTGTACCCTGGAATG+TGG | 0.615904 | 4_1:+86388021 | Msa0581060:CDS |
| AGAATGAAATAATTACACTC+TGG | 0.620611 | 4_1:+86388291 | Msa0581060:exon |
| ACAACGTGTACCTTACACAT+GGG | 0.621927 | 4_1:-86386733 | None:intergenic |
| TCAATATGTTGATGACAACT+TGG | 0.624135 | 4_1:-86386937 | None:intergenic |
| GTGTCAATGTCTCATTGTCA+TGG | 0.624411 | 4_1:-86388169 | None:intergenic |
| AAGACAATTAAATTGTACCC+TGG | 0.629319 | 4_1:+86388014 | Msa0581060:CDS |
| GTGTATGGTGTAGATTATGA+AGG | 0.634571 | 4_1:+86386415 | Msa0581060:CDS |
| CCTTACACATGGGTGCGACA+AGG | 0.636170 | 4_1:-86386723 | None:intergenic |
| TTGACTGTGACCATGAATGT+AGG | 0.636251 | 4_1:+86388316 | Msa0581060:three_prime_UTR |
| GGTGTAGATTATGAAGGACA+TGG | 0.638840 | 4_1:+86386421 | Msa0581060:CDS |
| TTGTACCCTGGAATGTGGCA+TGG | 0.642467 | 4_1:+86388026 | Msa0581060:CDS |
| ATGATGGGTACTACAGAATG+TGG | 0.653378 | 4_1:+86386364 | Msa0581060:CDS |
| GTGGAAGATAGTTCCCACAA+AGG | 0.681811 | 4_1:+86386985 | Msa0581060:CDS |
| ATGTTGATGACAACTTGGTG+TGG | 0.690265 | 4_1:-86386932 | None:intergenic |
| GTACTACAGAATGTGGAGTG+CGG | 0.724286 | 4_1:+86386371 | Msa0581060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTAATCTATAATTG+AGG | + | chr4_1:86387093-86387112 | Msa0581060:intron | 10.0% |
| !!! | TTTTATTTAATCTATAATTG+AGG | + | chr4_1:86387093-86387112 | Msa0581060:intron | 10.0% |
| !! | ATATGGATTTATAATTAACT+TGG | - | chr4_1:86386829-86386848 | None:intergenic | 15.0% |
| !!! | TTTTCTAAACAAAAAGTATA+TGG | - | chr4_1:86386846-86386865 | None:intergenic | 15.0% |
| !!! | TAATTACATTTGGTTTTATT+TGG | - | chr4_1:86387846-86387865 | None:intergenic | 15.0% |
| !! | ATATGAAAAGTAATTACATT+TGG | - | chr4_1:86387856-86387875 | None:intergenic | 15.0% |
| !! | ATATGGATTTATAATTAACT+TGG | - | chr4_1:86386829-86386848 | None:intergenic | 15.0% |
| !!! | TTTTCTAAACAAAAAGTATA+TGG | - | chr4_1:86386846-86386865 | None:intergenic | 15.0% |
| !!! | TAATTACATTTGGTTTTATT+TGG | - | chr4_1:86387846-86387865 | None:intergenic | 15.0% |
| !! | ATATGAAAAGTAATTACATT+TGG | - | chr4_1:86387856-86387875 | None:intergenic | 15.0% |
| !! | AATGAATGATGAAACTATAA+TGG | - | chr4_1:86386578-86386597 | None:intergenic | 20.0% |
| !! | GTAAAAAATCTTTACATTAC+AGG | + | chr4_1:86386795-86386814 | Msa0581060:intron | 20.0% |
| !! | CTAAAGTAAACATGAAAATA+TGG | + | chr4_1:86386874-86386893 | Msa0581060:intron | 20.0% |
| !!! | ACTTATTTGAACTTTTTTTG+AGG | + | chr4_1:86387348-86387367 | Msa0581060:intron | 20.0% |
| !!! | CTTATTTGAACTTTTTTTGA+GGG | + | chr4_1:86387349-86387368 | Msa0581060:intron | 20.0% |
| !!! | ACTTATTTCTATAAATTCTC+CGG | + | chr4_1:86387462-86387481 | Msa0581060:intron | 20.0% |
| !!! | CAAATTGTTTTTCTTTTAAC+CGG | + | chr4_1:86387627-86387646 | Msa0581060:intron | 20.0% |
| !! | AAAATCAATCCTATTCAAAA+AGG | - | chr4_1:86387656-86387675 | None:intergenic | 20.0% |
| !!! | ATCACTTTTAGTTTTTGTTA+CGG | + | chr4_1:86387815-86387834 | Msa0581060:intron | 20.0% |
| !! | CATATCATACCTAATTTATT+TGG | + | chr4_1:86387871-86387890 | Msa0581060:intron | 20.0% |
| !! | AATGAATGATGAAACTATAA+TGG | - | chr4_1:86386578-86386597 | None:intergenic | 20.0% |
| !! | GTAAAAAATCTTTACATTAC+AGG | + | chr4_1:86386795-86386814 | Msa0581060:intron | 20.0% |
| !! | CTAAAGTAAACATGAAAATA+TGG | + | chr4_1:86386874-86386893 | Msa0581060:intron | 20.0% |
| !!! | ACTTATTTGAACTTTTTTTG+AGG | + | chr4_1:86387348-86387367 | Msa0581060:intron | 20.0% |
| !!! | CTTATTTGAACTTTTTTTGA+GGG | + | chr4_1:86387349-86387368 | Msa0581060:intron | 20.0% |
| !!! | ACTTATTTCTATAAATTCTC+CGG | + | chr4_1:86387462-86387481 | Msa0581060:intron | 20.0% |
| !!! | CAAATTGTTTTTCTTTTAAC+CGG | + | chr4_1:86387627-86387646 | Msa0581060:intron | 20.0% |
| !! | AAAATCAATCCTATTCAAAA+AGG | - | chr4_1:86387656-86387675 | None:intergenic | 20.0% |
| !!! | ATCACTTTTAGTTTTTGTTA+CGG | + | chr4_1:86387815-86387834 | Msa0581060:intron | 20.0% |
| !! | CATATCATACCTAATTTATT+TGG | + | chr4_1:86387871-86387890 | Msa0581060:intron | 20.0% |
| ! | TTCAGATATATTTACGAGAA+AGG | - | chr4_1:86387071-86387090 | None:intergenic | 25.0% |
| !!! | CTTATTTCTATAAATTCTCC+GGG | + | chr4_1:86387463-86387482 | Msa0581060:intron | 25.0% |
| !!! | GTGTATGTTTGTTTCTATTT+TGG | + | chr4_1:86387597-86387616 | Msa0581060:intron | 25.0% |
| !!! | TATGTTTGTTTCTATTTTGG+AGG | + | chr4_1:86387600-86387619 | Msa0581060:intron | 25.0% |
| ! | CGGTTAAAAGAAAAACAATT+TGG | - | chr4_1:86387629-86387648 | None:intergenic | 25.0% |
| !! | AAGTTAGAATCAATTTTGGA+AGG | - | chr4_1:86387679-86387698 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTAGAATCAATTT+TGG | - | chr4_1:86387683-86387702 | None:intergenic | 25.0% |
| ! | GGCTAAAAATCAAAATTTAG+AGG | - | chr4_1:86387725-86387744 | None:intergenic | 25.0% |
| ! | AATGTGAATCACTTTATGTT+TGG | - | chr4_1:86387791-86387810 | None:intergenic | 25.0% |
| ! | ACCTAATTTATTTGGTACTT+TGG | + | chr4_1:86387879-86387898 | Msa0581060:intron | 25.0% |
| ! | CCTAATTTATTTGGTACTTT+GGG | + | chr4_1:86387880-86387899 | Msa0581060:intron | 25.0% |
| ! | ATGCAATACAAAAAATGGAA+AGG | - | chr4_1:86387925-86387944 | None:intergenic | 25.0% |
| !!! | TTTCCATTTTTTGTATTGCA+TGG | + | chr4_1:86387924-86387943 | Msa0581060:CDS | 25.0% |
| !!! | TTTTTGAAGACATCATAACA+TGG | + | chr4_1:86388087-86388106 | Msa0581060:CDS | 25.0% |
| ! | AGAATGAAATAATTACACTC+TGG | + | chr4_1:86388291-86388310 | Msa0581060:exon | 25.0% |
| ! | TTCAGATATATTTACGAGAA+AGG | - | chr4_1:86387071-86387090 | None:intergenic | 25.0% |
| !!! | CTTATTTCTATAAATTCTCC+GGG | + | chr4_1:86387463-86387482 | Msa0581060:intron | 25.0% |
| !!! | GTGTATGTTTGTTTCTATTT+TGG | + | chr4_1:86387597-86387616 | Msa0581060:intron | 25.0% |
| !!! | TATGTTTGTTTCTATTTTGG+AGG | + | chr4_1:86387600-86387619 | Msa0581060:intron | 25.0% |
| ! | CGGTTAAAAGAAAAACAATT+TGG | - | chr4_1:86387629-86387648 | None:intergenic | 25.0% |
| !! | AAGTTAGAATCAATTTTGGA+AGG | - | chr4_1:86387679-86387698 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTAGAATCAATTT+TGG | - | chr4_1:86387683-86387702 | None:intergenic | 25.0% |
| ! | GGCTAAAAATCAAAATTTAG+AGG | - | chr4_1:86387725-86387744 | None:intergenic | 25.0% |
| ! | AATGTGAATCACTTTATGTT+TGG | - | chr4_1:86387791-86387810 | None:intergenic | 25.0% |
| ! | ACCTAATTTATTTGGTACTT+TGG | + | chr4_1:86387879-86387898 | Msa0581060:intron | 25.0% |
| ! | CCTAATTTATTTGGTACTTT+GGG | + | chr4_1:86387880-86387899 | Msa0581060:intron | 25.0% |
| ! | ATGCAATACAAAAAATGGAA+AGG | - | chr4_1:86387925-86387944 | None:intergenic | 25.0% |
| !!! | TTTCCATTTTTTGTATTGCA+TGG | + | chr4_1:86387924-86387943 | Msa0581060:CDS | 25.0% |
| !!! | TTTTTGAAGACATCATAACA+TGG | + | chr4_1:86388087-86388106 | Msa0581060:CDS | 25.0% |
| ! | AGAATGAAATAATTACACTC+TGG | + | chr4_1:86388291-86388310 | Msa0581060:exon | 25.0% |
| GGTTTATCTCTAGCTAATTA+TGG | + | chr4_1:86386337-86386356 | Msa0581060:five_prime_UTR | 30.0% | |
| TACACTCAAAAGATTAGACA+AGG | - | chr4_1:86386544-86386563 | None:intergenic | 30.0% | |
| !! | TAGTCTACTTTTGCATCAAA+AGG | + | chr4_1:86386675-86386694 | Msa0581060:CDS | 30.0% |
| !! | TCAATATGTTGATGACAACT+TGG | - | chr4_1:86386940-86386959 | None:intergenic | 30.0% |
| TTGAAGATATCATACCAAAG+TGG | + | chr4_1:86386966-86386985 | Msa0581060:CDS | 30.0% | |
| ! | AAATTGATGACATCCTTTGT+GGG | - | chr4_1:86387001-86387020 | None:intergenic | 30.0% |
| !! | GAAAAACAAGTTGATATACC+AGG | + | chr4_1:86387196-86387215 | Msa0581060:CDS | 30.0% |
| TGCATAGTTAACCTTGTATA+AGG | - | chr4_1:86387282-86387301 | None:intergenic | 30.0% | |
| ! | TGAGTTGAACAAGAAAATTG+AGG | - | chr4_1:86387746-86387765 | None:intergenic | 30.0% |
| ! | CCCAAAGTACCAAATAAATT+AGG | - | chr4_1:86387883-86387902 | None:intergenic | 30.0% |
| AATTTATTTGGTACTTTGGG+TGG | + | chr4_1:86387883-86387902 | Msa0581060:intron | 30.0% | |
| TCTCCATGCAATACAAAAAA+TGG | - | chr4_1:86387930-86387949 | None:intergenic | 30.0% | |
| AAGACAATTAAATTGTACCC+TGG | + | chr4_1:86388014-86388033 | Msa0581060:CDS | 30.0% | |
| !!! | ACTTTTTCAATGTTGTCATC+TGG | - | chr4_1:86388068-86388087 | None:intergenic | 30.0% |
| AATTGGATGTGTAGAATCAT+AGG | - | chr4_1:86388138-86388157 | None:intergenic | 30.0% | |
| AGACTATGAAACAATCTCAT+AGG | + | chr4_1:86388210-86388229 | Msa0581060:CDS | 30.0% | |
| !! | TTTCATTCTAATTTGCTGAG+TGG | - | chr4_1:86388280-86388299 | None:intergenic | 30.0% |
| ! | TACTGTTTTACAGTTTACTG+TGG | + | chr4_1:86388356-86388375 | Msa0581060:three_prime_UTR | 30.0% |
| ! | ACTGTTTTACAGTTTACTGT+GGG | + | chr4_1:86388357-86388376 | Msa0581060:three_prime_UTR | 30.0% |
| GGTTTATCTCTAGCTAATTA+TGG | + | chr4_1:86386337-86386356 | Msa0581060:five_prime_UTR | 30.0% | |
| TACACTCAAAAGATTAGACA+AGG | - | chr4_1:86386544-86386563 | None:intergenic | 30.0% | |
| !! | TAGTCTACTTTTGCATCAAA+AGG | + | chr4_1:86386675-86386694 | Msa0581060:CDS | 30.0% |
| !! | TCAATATGTTGATGACAACT+TGG | - | chr4_1:86386940-86386959 | None:intergenic | 30.0% |
| TTGAAGATATCATACCAAAG+TGG | + | chr4_1:86386966-86386985 | Msa0581060:CDS | 30.0% | |
| ! | AAATTGATGACATCCTTTGT+GGG | - | chr4_1:86387001-86387020 | None:intergenic | 30.0% |
| !! | GAAAAACAAGTTGATATACC+AGG | + | chr4_1:86387196-86387215 | Msa0581060:CDS | 30.0% |
| TGCATAGTTAACCTTGTATA+AGG | - | chr4_1:86387282-86387301 | None:intergenic | 30.0% | |
| ! | TGAGTTGAACAAGAAAATTG+AGG | - | chr4_1:86387746-86387765 | None:intergenic | 30.0% |
| ! | CCCAAAGTACCAAATAAATT+AGG | - | chr4_1:86387883-86387902 | None:intergenic | 30.0% |
| AATTTATTTGGTACTTTGGG+TGG | + | chr4_1:86387883-86387902 | Msa0581060:intron | 30.0% | |
| TCTCCATGCAATACAAAAAA+TGG | - | chr4_1:86387930-86387949 | None:intergenic | 30.0% | |
| AAGACAATTAAATTGTACCC+TGG | + | chr4_1:86388014-86388033 | Msa0581060:CDS | 30.0% | |
| !!! | ACTTTTTCAATGTTGTCATC+TGG | - | chr4_1:86388068-86388087 | None:intergenic | 30.0% |
| AATTGGATGTGTAGAATCAT+AGG | - | chr4_1:86388138-86388157 | None:intergenic | 30.0% | |
| AGACTATGAAACAATCTCAT+AGG | + | chr4_1:86388210-86388229 | Msa0581060:CDS | 30.0% | |
| !! | TTTCATTCTAATTTGCTGAG+TGG | - | chr4_1:86388280-86388299 | None:intergenic | 30.0% |
| AGCTAATTATGGTAGCATGA+TGG | + | chr4_1:86386348-86386367 | Msa0581060:exon | 35.0% | |
| GCTAATTATGGTAGCATGAT+GGG | + | chr4_1:86386349-86386368 | Msa0581060:exon | 35.0% | |
| TACACCATACACAGCATATT+TGG | - | chr4_1:86386407-86386426 | None:intergenic | 35.0% | |
| GTGTATGGTGTAGATTATGA+AGG | + | chr4_1:86386415-86386434 | Msa0581060:CDS | 35.0% | |
| !!! | GACTTTTTCAAGTCAGTTAG+TGG | + | chr4_1:86386505-86386524 | Msa0581060:CDS | 35.0% |
| ! | TTTCAAGTCAGTTAGTGGTA+TGG | + | chr4_1:86386510-86386529 | Msa0581060:intron | 35.0% |
| ! | TTCAGTTCTCCAAGAGTATA+AGG | + | chr4_1:86386609-86386628 | Msa0581060:intron | 35.0% |
| ! | TCAGTTCTCCAAGAGTATAA+GGG | + | chr4_1:86386610-86386629 | Msa0581060:intron | 35.0% |
| ! | TAGCTTTTCCCTTATACTCT+TGG | - | chr4_1:86386621-86386640 | None:intergenic | 35.0% |
| ! | AAGAGTATAAGGGAAAAGCT+AGG | + | chr4_1:86386620-86386639 | Msa0581060:CDS | 35.0% |
| ! | ATCAAAAGGACCCTTCTTTT+TGG | + | chr4_1:86386689-86386708 | Msa0581060:CDS | 35.0% |
| ! | TCAAAAGGACCCTTCTTTTT+GGG | + | chr4_1:86386690-86386709 | Msa0581060:CDS | 35.0% |
| ! | GAAATTGATGACATCCTTTG+TGG | - | chr4_1:86387002-86387021 | None:intergenic | 35.0% |
| TATACCACTTCCTTTGACAA+TGG | + | chr4_1:86387162-86387181 | Msa0581060:intron | 35.0% | |
| TTATCTGCAACCATTGTCAA+AGG | - | chr4_1:86387175-86387194 | None:intergenic | 35.0% | |
| TTTGACAATGGTTGCAGATA+AGG | + | chr4_1:86387174-86387193 | Msa0581060:intron | 35.0% | |
| ! | GCTGGTTCTTAACATTTCTA+GGG | - | chr4_1:86387243-86387262 | None:intergenic | 35.0% |
| !! | TGCTGGTTCTTAACATTTCT+AGG | - | chr4_1:86387244-86387263 | None:intergenic | 35.0% |
| TCTTGAAGACACCTTATACA+AGG | + | chr4_1:86387268-86387287 | Msa0581060:CDS | 35.0% | |
| ! | TAAGCATTGTTGAGACTGTT+TGG | + | chr4_1:86387401-86387420 | Msa0581060:intron | 35.0% |
| !! | TCCGGGATAACTTTTGAAAA+CGG | + | chr4_1:86387480-86387499 | Msa0581060:intron | 35.0% |
| !! | ATCCTATTCAAAAAGGCATC+CGG | - | chr4_1:86387649-86387668 | None:intergenic | 35.0% |
| TTAAATTGTACCCTGGAATG+TGG | + | chr4_1:86388021-86388040 | Msa0581060:CDS | 35.0% | |
| TCATGGTTACAAGTCTCAAT+TGG | - | chr4_1:86388155-86388174 | None:intergenic | 35.0% | |
| AGGCGAAAAAGTTATCTTTG+TGG | + | chr4_1:86388230-86388249 | Msa0581060:CDS | 35.0% | |
| AGTTATCTTTGTGGCTTGAA+AGG | + | chr4_1:86388239-86388258 | Msa0581060:CDS | 35.0% | |
| ACATCATGAACCTACATTCA+TGG | - | chr4_1:86388329-86388348 | None:intergenic | 35.0% | |
| ! | CTGTTTTACAGTTTACTGTG+GGG | + | chr4_1:86388358-86388377 | Msa0581060:three_prime_UTR | 35.0% |
| AGCTAATTATGGTAGCATGA+TGG | + | chr4_1:86386348-86386367 | Msa0581060:exon | 35.0% | |
| GCTAATTATGGTAGCATGAT+GGG | + | chr4_1:86386349-86386368 | Msa0581060:exon | 35.0% | |
| TACACCATACACAGCATATT+TGG | - | chr4_1:86386407-86386426 | None:intergenic | 35.0% | |
| GTGTATGGTGTAGATTATGA+AGG | + | chr4_1:86386415-86386434 | Msa0581060:CDS | 35.0% | |
| !!! | GACTTTTTCAAGTCAGTTAG+TGG | + | chr4_1:86386505-86386524 | Msa0581060:CDS | 35.0% |
| ! | TTTCAAGTCAGTTAGTGGTA+TGG | + | chr4_1:86386510-86386529 | Msa0581060:intron | 35.0% |
| ! | TTCAGTTCTCCAAGAGTATA+AGG | + | chr4_1:86386609-86386628 | Msa0581060:intron | 35.0% |
| ! | TCAGTTCTCCAAGAGTATAA+GGG | + | chr4_1:86386610-86386629 | Msa0581060:intron | 35.0% |
| ! | TAGCTTTTCCCTTATACTCT+TGG | - | chr4_1:86386621-86386640 | None:intergenic | 35.0% |
| ! | AAGAGTATAAGGGAAAAGCT+AGG | + | chr4_1:86386620-86386639 | Msa0581060:CDS | 35.0% |
| ! | ATCAAAAGGACCCTTCTTTT+TGG | + | chr4_1:86386689-86386708 | Msa0581060:CDS | 35.0% |
| ! | TCAAAAGGACCCTTCTTTTT+GGG | + | chr4_1:86386690-86386709 | Msa0581060:CDS | 35.0% |
| ! | GAAATTGATGACATCCTTTG+TGG | - | chr4_1:86387002-86387021 | None:intergenic | 35.0% |
| TATACCACTTCCTTTGACAA+TGG | + | chr4_1:86387162-86387181 | Msa0581060:intron | 35.0% | |
| TTATCTGCAACCATTGTCAA+AGG | - | chr4_1:86387175-86387194 | None:intergenic | 35.0% | |
| TTTGACAATGGTTGCAGATA+AGG | + | chr4_1:86387174-86387193 | Msa0581060:intron | 35.0% | |
| ! | GCTGGTTCTTAACATTTCTA+GGG | - | chr4_1:86387243-86387262 | None:intergenic | 35.0% |
| !! | TGCTGGTTCTTAACATTTCT+AGG | - | chr4_1:86387244-86387263 | None:intergenic | 35.0% |
| TCTTGAAGACACCTTATACA+AGG | + | chr4_1:86387268-86387287 | Msa0581060:CDS | 35.0% | |
| ! | TAAGCATTGTTGAGACTGTT+TGG | + | chr4_1:86387401-86387420 | Msa0581060:intron | 35.0% |
| !! | TCCGGGATAACTTTTGAAAA+CGG | + | chr4_1:86387480-86387499 | Msa0581060:intron | 35.0% |
| !! | ATCCTATTCAAAAAGGCATC+CGG | - | chr4_1:86387649-86387668 | None:intergenic | 35.0% |
| TTAAATTGTACCCTGGAATG+TGG | + | chr4_1:86388021-86388040 | Msa0581060:CDS | 35.0% | |
| TCATGGTTACAAGTCTCAAT+TGG | - | chr4_1:86388155-86388174 | None:intergenic | 35.0% | |
| AGGCGAAAAAGTTATCTTTG+TGG | + | chr4_1:86388230-86388249 | Msa0581060:CDS | 35.0% | |
| AGTTATCTTTGTGGCTTGAA+AGG | + | chr4_1:86388239-86388258 | Msa0581060:CDS | 35.0% | |
| ACATCATGAACCTACATTCA+TGG | - | chr4_1:86388329-86388348 | None:intergenic | 35.0% | |
| !! | ATGATGGGTACTACAGAATG+TGG | + | chr4_1:86386364-86386383 | Msa0581060:CDS | 40.0% |
| TGTGCCAAATATGCTGTGTA+TGG | + | chr4_1:86386400-86386419 | Msa0581060:CDS | 40.0% | |
| GGTGTAGATTATGAAGGACA+TGG | + | chr4_1:86386421-86386440 | Msa0581060:CDS | 40.0% | |
| GGAAAAGCTAGGTTCTTGTA+TGG | + | chr4_1:86386631-86386650 | Msa0581060:CDS | 40.0% | |
| TTCTTGTATGGAGAGTCCAT+GGG | + | chr4_1:86386643-86386662 | Msa0581060:CDS | 40.0% | |
| ACAACGTGTACCTTACACAT+GGG | - | chr4_1:86386736-86386755 | None:intergenic | 40.0% | |
| TACAACGTGTACCTTACACA+TGG | - | chr4_1:86386737-86386756 | None:intergenic | 40.0% | |
| !! | ATGTTGATGACAACTTGGTG+TGG | - | chr4_1:86386935-86386954 | None:intergenic | 40.0% |
| CAATTTCGCCTTCAAAGATC+CGG | + | chr4_1:86387015-86387034 | Msa0581060:CDS | 40.0% | |
| !!! | TCTAGGGCTGTTTTTAACCT+GGG | - | chr4_1:86387227-86387246 | None:intergenic | 40.0% |
| !!! | TTCTAGGGCTGTTTTTAACC+TGG | - | chr4_1:86387228-86387247 | None:intergenic | 40.0% |
| !! | GCCGTTTTCAAAAGTTATCC+CGG | - | chr4_1:86387484-86387503 | None:intergenic | 40.0% |
| ! | AACCGGATGCCTTTTTGAAT+AGG | + | chr4_1:86387644-86387663 | Msa0581060:intron | 40.0% |
| ATAATGCCCTGCTTACTTCT+GGG | - | chr4_1:86387971-86387990 | None:intergenic | 40.0% | |
| TATAATGCCCTGCTTACTTC+TGG | - | chr4_1:86387972-86387991 | None:intergenic | 40.0% | |
| TTAAACCATGCCACATTCCA+GGG | - | chr4_1:86388034-86388053 | None:intergenic | 40.0% | |
| ATGTGGCATGGTTTAACATC+TGG | + | chr4_1:86388038-86388057 | Msa0581060:CDS | 40.0% | |
| AGAATCATAGGCAGCATTGT+TGG | - | chr4_1:86388126-86388145 | None:intergenic | 40.0% | |
| GTGTCAATGTCTCATTGTCA+TGG | - | chr4_1:86388172-86388191 | None:intergenic | 40.0% | |
| GTCTTTGCTGATGATACAAC+TGG | - | chr4_1:86388194-86388213 | None:intergenic | 40.0% | |
| TTGACTGTGACCATGAATGT+AGG | + | chr4_1:86388316-86388335 | Msa0581060:three_prime_UTR | 40.0% | |
| !! | ATGATGGGTACTACAGAATG+TGG | + | chr4_1:86386364-86386383 | Msa0581060:CDS | 40.0% |
| TGTGCCAAATATGCTGTGTA+TGG | + | chr4_1:86386400-86386419 | Msa0581060:CDS | 40.0% | |
| GGTGTAGATTATGAAGGACA+TGG | + | chr4_1:86386421-86386440 | Msa0581060:CDS | 40.0% | |
| GGAAAAGCTAGGTTCTTGTA+TGG | + | chr4_1:86386631-86386650 | Msa0581060:CDS | 40.0% | |
| TTCTTGTATGGAGAGTCCAT+GGG | + | chr4_1:86386643-86386662 | Msa0581060:CDS | 40.0% | |
| ACAACGTGTACCTTACACAT+GGG | - | chr4_1:86386736-86386755 | None:intergenic | 40.0% | |
| TACAACGTGTACCTTACACA+TGG | - | chr4_1:86386737-86386756 | None:intergenic | 40.0% | |
| !! | ATGTTGATGACAACTTGGTG+TGG | - | chr4_1:86386935-86386954 | None:intergenic | 40.0% |
| CAATTTCGCCTTCAAAGATC+CGG | + | chr4_1:86387015-86387034 | Msa0581060:CDS | 40.0% | |
| !!! | TCTAGGGCTGTTTTTAACCT+GGG | - | chr4_1:86387227-86387246 | None:intergenic | 40.0% |
| !!! | TTCTAGGGCTGTTTTTAACC+TGG | - | chr4_1:86387228-86387247 | None:intergenic | 40.0% |
| !! | GCCGTTTTCAAAAGTTATCC+CGG | - | chr4_1:86387484-86387503 | None:intergenic | 40.0% |
| ! | AACCGGATGCCTTTTTGAAT+AGG | + | chr4_1:86387644-86387663 | Msa0581060:intron | 40.0% |
| ATAATGCCCTGCTTACTTCT+GGG | - | chr4_1:86387971-86387990 | None:intergenic | 40.0% | |
| TATAATGCCCTGCTTACTTC+TGG | - | chr4_1:86387972-86387991 | None:intergenic | 40.0% | |
| TTAAACCATGCCACATTCCA+GGG | - | chr4_1:86388034-86388053 | None:intergenic | 40.0% | |
| ATGTGGCATGGTTTAACATC+TGG | + | chr4_1:86388038-86388057 | Msa0581060:CDS | 40.0% | |
| AGAATCATAGGCAGCATTGT+TGG | - | chr4_1:86388126-86388145 | None:intergenic | 40.0% | |
| GTGTCAATGTCTCATTGTCA+TGG | - | chr4_1:86388172-86388191 | None:intergenic | 40.0% | |
| GTCTTTGCTGATGATACAAC+TGG | - | chr4_1:86388194-86388213 | None:intergenic | 40.0% | |
| TTGACTGTGACCATGAATGT+AGG | + | chr4_1:86388316-86388335 | Msa0581060:three_prime_UTR | 40.0% | |
| GTACTACAGAATGTGGAGTG+CGG | + | chr4_1:86386371-86386390 | Msa0581060:CDS | 45.0% | |
| GAAGGACATGGACAATCTGA+AGG | + | chr4_1:86386433-86386452 | Msa0581060:CDS | 45.0% | |
| GTTCTTGTATGGAGAGTCCA+TGG | + | chr4_1:86386642-86386661 | Msa0581060:CDS | 45.0% | |
| !! | AAGGACCCTTCTTTTTGGGA+TGG | + | chr4_1:86386694-86386713 | Msa0581060:CDS | 45.0% |
| GTGGGAACTATCTTCCACTT+TGG | - | chr4_1:86386983-86387002 | None:intergenic | 45.0% | |
| GTGGAAGATAGTTCCCACAA+AGG | + | chr4_1:86386985-86387004 | Msa0581060:CDS | 45.0% | |
| AAACCTCACCCTTTCTCGTT+TGG | - | chr4_1:86387041-86387060 | None:intergenic | 45.0% | |
| GCAACCATTGTCAAAGGAAG+TGG | - | chr4_1:86387169-86387188 | None:intergenic | 45.0% | |
| ! | TTTTTAACCTGGGCTTGTCC+TGG | - | chr4_1:86387217-86387236 | None:intergenic | 45.0% |
| GGTGTCTTCAAGATTCATGC+TGG | - | chr4_1:86387261-86387280 | None:intergenic | 45.0% | |
| ! | CTTTGGGTGGAATTTTGAGC+AGG | + | chr4_1:86387896-86387915 | Msa0581060:intron | 45.0% |
| GTTAAACCATGCCACATTCC+AGG | - | chr4_1:86388035-86388054 | None:intergenic | 45.0% | |
| GTACTACAGAATGTGGAGTG+CGG | + | chr4_1:86386371-86386390 | Msa0581060:CDS | 45.0% | |
| GAAGGACATGGACAATCTGA+AGG | + | chr4_1:86386433-86386452 | Msa0581060:CDS | 45.0% | |
| GTTCTTGTATGGAGAGTCCA+TGG | + | chr4_1:86386642-86386661 | Msa0581060:CDS | 45.0% | |
| !! | AAGGACCCTTCTTTTTGGGA+TGG | + | chr4_1:86386694-86386713 | Msa0581060:CDS | 45.0% |
| GTGGGAACTATCTTCCACTT+TGG | - | chr4_1:86386983-86387002 | None:intergenic | 45.0% | |
| GTGGAAGATAGTTCCCACAA+AGG | + | chr4_1:86386985-86387004 | Msa0581060:CDS | 45.0% | |
| AAACCTCACCCTTTCTCGTT+TGG | - | chr4_1:86387041-86387060 | None:intergenic | 45.0% | |
| GCAACCATTGTCAAAGGAAG+TGG | - | chr4_1:86387169-86387188 | None:intergenic | 45.0% | |
| ! | TTTTTAACCTGGGCTTGTCC+TGG | - | chr4_1:86387217-86387236 | None:intergenic | 45.0% |
| GGTGTCTTCAAGATTCATGC+TGG | - | chr4_1:86387261-86387280 | None:intergenic | 45.0% | |
| ! | CTTTGGGTGGAATTTTGAGC+AGG | + | chr4_1:86387896-86387915 | Msa0581060:intron | 45.0% |
| GTTAAACCATGCCACATTCC+AGG | - | chr4_1:86388035-86388054 | None:intergenic | 45.0% | |
| TTGTATGGAGAGTCCATGGG+TGG | + | chr4_1:86386646-86386665 | Msa0581060:CDS | 50.0% | |
| TAGACTAACTGCTCCACCCA+TGG | - | chr4_1:86386662-86386681 | None:intergenic | 50.0% | |
| CAGCGCCATCCCAAAAAGAA+GGG | - | chr4_1:86386702-86386721 | None:intergenic | 50.0% | |
| ACAGCGCCATCCCAAAAAGA+AGG | - | chr4_1:86386703-86386722 | None:intergenic | 50.0% | |
| TCGTTTGGCCGGATCTTTGA+AGG | - | chr4_1:86387026-86387045 | None:intergenic | 50.0% | |
| AAGATCCGGCCAAACGAGAA+AGG | + | chr4_1:86387029-86387048 | Msa0581060:CDS | 50.0% | |
| AGATCCGGCCAAACGAGAAA+GGG | + | chr4_1:86387030-86387049 | Msa0581060:CDS | 50.0% | |
| TGATATACCAGGACAAGCCC+AGG | + | chr4_1:86387207-86387226 | Msa0581060:CDS | 50.0% | |
| TGACAGACCCAGAAGTAAGC+AGG | + | chr4_1:86387961-86387980 | Msa0581060:CDS | 50.0% | |
| GACAGACCCAGAAGTAAGCA+GGG | + | chr4_1:86387962-86387981 | Msa0581060:CDS | 50.0% | |
| TTGTACCCTGGAATGTGGCA+TGG | + | chr4_1:86388026-86388045 | Msa0581060:CDS | 50.0% | |
| TTGTATGGAGAGTCCATGGG+TGG | + | chr4_1:86386646-86386665 | Msa0581060:CDS | 50.0% | |
| TAGACTAACTGCTCCACCCA+TGG | - | chr4_1:86386662-86386681 | None:intergenic | 50.0% | |
| CAGCGCCATCCCAAAAAGAA+GGG | - | chr4_1:86386702-86386721 | None:intergenic | 50.0% | |
| ACAGCGCCATCCCAAAAAGA+AGG | - | chr4_1:86386703-86386722 | None:intergenic | 50.0% | |
| TCGTTTGGCCGGATCTTTGA+AGG | - | chr4_1:86387026-86387045 | None:intergenic | 50.0% | |
| AAGATCCGGCCAAACGAGAA+AGG | + | chr4_1:86387029-86387048 | Msa0581060:CDS | 50.0% | |
| AGATCCGGCCAAACGAGAAA+GGG | + | chr4_1:86387030-86387049 | Msa0581060:CDS | 50.0% | |
| TGATATACCAGGACAAGCCC+AGG | + | chr4_1:86387207-86387226 | Msa0581060:CDS | 50.0% | |
| TGACAGACCCAGAAGTAAGC+AGG | + | chr4_1:86387961-86387980 | Msa0581060:CDS | 50.0% | |
| GACAGACCCAGAAGTAAGCA+GGG | + | chr4_1:86387962-86387981 | Msa0581060:CDS | 50.0% | |
| TTGTACCCTGGAATGTGGCA+TGG | + | chr4_1:86388026-86388045 | Msa0581060:CDS | 50.0% | |
| CCTTACACATGGGTGCGACA+AGG | - | chr4_1:86386726-86386745 | None:intergenic | 55.0% | |
| CCTTGTCGCACCCATGTGTA+AGG | + | chr4_1:86386723-86386742 | Msa0581060:CDS | 55.0% | |
| CTCACCCTTTCTCGTTTGGC+CGG | - | chr4_1:86387037-86387056 | None:intergenic | 55.0% | |
| CCTTACACATGGGTGCGACA+AGG | - | chr4_1:86386726-86386745 | None:intergenic | 55.0% | |
| CCTTGTCGCACCCATGTGTA+AGG | + | chr4_1:86386723-86386742 | Msa0581060:CDS | 55.0% | |
| CTCACCCTTTCTCGTTTGGC+CGG | - | chr4_1:86387037-86387056 | None:intergenic | 55.0% | |
| CGGCCAAACGAGAAAGGGTG+AGG | + | chr4_1:86387035-86387054 | Msa0581060:intron | 60.0% | |
| CGGCCAAACGAGAAAGGGTG+AGG | + | chr4_1:86387035-86387054 | Msa0581060:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86386337 | 86388378 | 86386337 | ID=Msa0581060;Name=Msa0581060 |
| chr4_1 | mRNA | 86386337 | 86388378 | 86386337 | ID=Msa0581060-mRNA-1;Parent=Msa0581060;Name=Msa0581060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=27|1|1|1|1|1|5|86|301 |
| chr4_1 | exon | 86386337 | 86386526 | 86386337 | ID=Msa0581060-mRNA-1:exon:31869;Parent=Msa0581060-mRNA-1 |
| chr4_1 | exon | 86386614 | 86386744 | 86386614 | ID=Msa0581060-mRNA-1:exon:31870;Parent=Msa0581060-mRNA-1 |
| chr4_1 | exon | 86386914 | 86387051 | 86386914 | ID=Msa0581060-mRNA-1:exon:31871;Parent=Msa0581060-mRNA-1 |
| chr4_1 | exon | 86387191 | 86387289 | 86387191 | ID=Msa0581060-mRNA-1:exon:31872;Parent=Msa0581060-mRNA-1 |
| chr4_1 | exon | 86387918 | 86388378 | 86387918 | ID=Msa0581060-mRNA-1:exon:31873;Parent=Msa0581060-mRNA-1 |
| chr4_1 | five_prime_UTR | 86386337 | 86386363 | 86386337 | ID=Msa0581060-mRNA-1:five_prime_utr;Parent=Msa0581060-mRNA-1 |
| chr4_1 | CDS | 86386364 | 86386526 | 86386364 | ID=Msa0581060-mRNA-1:cds;Parent=Msa0581060-mRNA-1 |
| chr4_1 | CDS | 86386614 | 86386744 | 86386614 | ID=Msa0581060-mRNA-1:cds;Parent=Msa0581060-mRNA-1 |
| chr4_1 | CDS | 86386914 | 86387051 | 86386914 | ID=Msa0581060-mRNA-1:cds;Parent=Msa0581060-mRNA-1 |
| chr4_1 | CDS | 86387191 | 86387289 | 86387191 | ID=Msa0581060-mRNA-1:cds;Parent=Msa0581060-mRNA-1 |
| chr4_1 | CDS | 86387918 | 86388292 | 86387918 | ID=Msa0581060-mRNA-1:cds;Parent=Msa0581060-mRNA-1 |
| chr4_1 | three_prime_UTR | 86388293 | 86388378 | 86388293 | ID=Msa0581060-mRNA-1:three_prime_utr;Parent=Msa0581060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
