Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165760 | XP_003625919.2 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165760 | sp|Q9C942|CSE_ARATH | 38.516 | 283 | 171 | 3 | 9 | 289 | 41 | 322 | 4.06e-64 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165760 | G7KRW6 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044160 | Msa1165760 | 0.808290 | 3.330894e-50 | -8.615850e-47 |
| Msa0045810 | Msa1165760 | 0.805203 | 1.495429e-49 | -8.615850e-47 |
| Msa0062190 | Msa1165760 | 0.805296 | 1.429804e-49 | -8.615850e-47 |
| Msa0618680 | Msa1165760 | 0.803776 | 2.966004e-49 | -8.615850e-47 |
| Msa0618700 | Msa1165760 | 0.810892 | 9.197104e-51 | -8.615850e-47 |
| Msa0745140 | Msa1165760 | 0.809976 | 1.449997e-50 | -8.615850e-47 |
| Msa0776640 | Msa1165760 | 0.810296 | 1.237068e-50 | -8.615850e-47 |
| Msa0825920 | Msa1165760 | 0.804933 | 1.702413e-49 | -8.615850e-47 |
| Msa0139500 | Msa1165760 | 0.811077 | 8.386287e-51 | -8.615850e-47 |
| Msa0183710 | Msa1165760 | 0.803247 | 3.818105e-49 | -8.615850e-47 |
| Msa0437480 | Msa1165760 | 0.803441 | 3.481039e-49 | -8.615850e-47 |
| Msa0437520 | Msa1165760 | 0.814289 | 1.661810e-51 | -8.615850e-47 |
| Msa1022420 | Msa1165760 | 0.804940 | 1.697237e-49 | -8.615850e-47 |
| Msa1044250 | Msa1165760 | 0.826328 | 2.881116e-54 | -8.615850e-47 |
| Msa1078830 | Msa1165760 | 0.804520 | 2.077109e-49 | -8.615850e-47 |
| Msa1078890 | Msa1165760 | 0.803024 | 4.246578e-49 | -8.615850e-47 |
| Msa1081970 | Msa1165760 | 0.946884 | 1.963390e-105 | -8.615850e-47 |
| Msa1106590 | Msa1165760 | 0.813286 | 2.764781e-51 | -8.615850e-47 |
| Msa0256540 | Msa1165760 | 0.801587 | 8.393005e-49 | -8.615850e-47 |
| Msa0318490 | Msa1165760 | 0.824945 | 6.130028e-54 | -8.615850e-47 |
| Msa0354840 | Msa1165760 | 0.801041 | 1.085860e-48 | -8.615850e-47 |
| Msa1165460 | Msa1165760 | 0.811057 | 8.467290e-51 | -8.615850e-47 |
| Msa1165760 | Msa1169660 | 0.800290 | 1.544536e-48 | -8.615850e-47 |
| Msa1165760 | Msa1366610 | 0.950028 | 3.827171e-108 | -8.615850e-47 |
| Msa1165760 | Msa1407810 | 0.803390 | 3.566829e-49 | -8.615850e-47 |
| Msa1165760 | Msa1433360 | 0.822710 | 2.048190e-53 | -8.615850e-47 |
| Msa1165760 | Msa1437780 | 0.801892 | 7.265061e-49 | -8.615850e-47 |
| Msa0565700 | Msa1165760 | 0.810006 | 1.428204e-50 | -8.615850e-47 |
| Msa0567330 | Msa1165760 | 0.813710 | 2.229629e-51 | -8.615850e-47 |
| Msa0576320 | Msa1165760 | 0.800014 | 1.757865e-48 | -8.615850e-47 |
| Msa0581060 | Msa1165760 | 0.942112 | 1.278862e-101 | -8.615850e-47 |
| Msa0865420 | Msa1165760 | 0.814215 | 1.725918e-51 | -8.615850e-47 |
| Msa0967780 | Msa1165760 | 0.801460 | 8.908887e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165760 | MtrunA17_Chr7g0269371 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Msa1165760 | MtrunA17_Chr1g0195501 | 71.383 | 311 | 87 | 2 | 1 | 309 | 1 | 311 | 7.56e-169 | 473 |
| Msa1165760 | MtrunA17_Chr1g0212901 | 51.903 | 289 | 138 | 1 | 2 | 289 | 4 | 292 | 1.54e-113 | 332 |
| Msa1165760 | MtrunA17_Chr6g0457581 | 48.264 | 288 | 148 | 1 | 5 | 291 | 51 | 338 | 8.68e-98 | 293 |
| Msa1165760 | MtrunA17_Chr6g0460121 | 49.104 | 279 | 141 | 1 | 14 | 291 | 23 | 301 | 4.20e-97 | 290 |
| Msa1165760 | MtrunA17_Chr7g0215451 | 45.455 | 286 | 155 | 1 | 5 | 289 | 52 | 337 | 7.10e-92 | 278 |
| Msa1165760 | MtrunA17_Chr1g0209741 | 42.756 | 283 | 160 | 1 | 8 | 288 | 93 | 375 | 4.60e-87 | 267 |
| Msa1165760 | MtrunA17_Chr5g0423541 | 43.816 | 283 | 157 | 1 | 8 | 288 | 107 | 389 | 9.21e-85 | 261 |
| Msa1165760 | MtrunA17_Chr4g0047891 | 45.520 | 279 | 150 | 1 | 12 | 288 | 43 | 321 | 6.50e-81 | 249 |
| Msa1165760 | MtrunA17_Chr1g0199771 | 38.047 | 297 | 178 | 5 | 7 | 299 | 30 | 324 | 1.42e-63 | 205 |
| Msa1165760 | MtrunA17_Chr4g0071671 | 37.143 | 280 | 173 | 3 | 12 | 289 | 35 | 313 | 8.04e-62 | 200 |
| Msa1165760 | MtrunA17_Chr6g0484431 | 42.857 | 224 | 125 | 3 | 9 | 229 | 58 | 281 | 2.48e-58 | 190 |
| Msa1165760 | MtrunA17_Chr6g0479331 | 34.155 | 284 | 173 | 9 | 10 | 288 | 114 | 388 | 8.93e-35 | 131 |
| Msa1165760 | MtrunA17_Chr3g0140391 | 30.576 | 278 | 179 | 8 | 16 | 289 | 103 | 370 | 3.74e-34 | 129 |
| Msa1165760 | MtrunA17_Chr6g0484421 | 50.000 | 64 | 32 | 0 | 230 | 293 | 1 | 64 | 7.77e-17 | 74.3 |
| Msa1165760 | MtrunA17_Chr1g0209761 | 50.000 | 66 | 33 | 0 | 223 | 288 | 12 | 77 | 1.20e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165760 | AT3G62860.1 | 67.723 | 347 | 109 | 2 | 1 | 345 | 2 | 347 | 0.0 | 510 |
| Msa1165760 | AT2G47630.1 | 66.476 | 349 | 107 | 3 | 4 | 345 | 5 | 350 | 4.45e-174 | 487 |
| Msa1165760 | AT3G62860.2 | 68.197 | 305 | 94 | 2 | 43 | 345 | 1 | 304 | 5.53e-159 | 447 |
| Msa1165760 | AT2G47630.2 | 65.909 | 308 | 97 | 2 | 43 | 345 | 1 | 305 | 2.10e-150 | 426 |
| Msa1165760 | AT2G47630.3 | 65.347 | 303 | 97 | 2 | 48 | 345 | 26 | 325 | 2.56e-146 | 416 |
| Msa1165760 | AT2G39420.1 | 57.877 | 292 | 122 | 1 | 5 | 295 | 8 | 299 | 1.88e-123 | 358 |
| Msa1165760 | AT2G39410.2 | 55.517 | 290 | 128 | 1 | 4 | 292 | 7 | 296 | 4.40e-119 | 347 |
| Msa1165760 | AT3G55180.1 | 56.597 | 288 | 123 | 1 | 7 | 292 | 4 | 291 | 5.92e-118 | 343 |
| Msa1165760 | AT2G39400.1 | 55.017 | 289 | 129 | 1 | 7 | 294 | 4 | 292 | 7.03e-116 | 338 |
| Msa1165760 | AT3G55190.1 | 46.417 | 321 | 164 | 3 | 1 | 319 | 4 | 318 | 4.95e-104 | 308 |
| Msa1165760 | AT5G16120.3 | 46.622 | 296 | 157 | 1 | 5 | 299 | 53 | 348 | 2.93e-94 | 285 |
| Msa1165760 | AT5G16120.1 | 46.622 | 296 | 157 | 1 | 5 | 299 | 53 | 348 | 2.93e-94 | 285 |
| Msa1165760 | AT5G16120.2 | 46.622 | 296 | 157 | 1 | 5 | 299 | 71 | 366 | 7.62e-94 | 284 |
| Msa1165760 | AT5G16120.4 | 46.622 | 296 | 157 | 1 | 5 | 299 | 85 | 380 | 9.15e-94 | 285 |
| Msa1165760 | AT1G11090.1 | 46.099 | 282 | 150 | 1 | 9 | 288 | 31 | 312 | 4.64e-87 | 265 |
| Msa1165760 | AT2G39400.2 | 53.881 | 219 | 100 | 1 | 6 | 223 | 3 | 221 | 7.95e-83 | 252 |
| Msa1165760 | AT1G77420.1 | 41.115 | 287 | 167 | 1 | 8 | 292 | 94 | 380 | 9.98e-78 | 243 |
| Msa1165760 | AT5G14980.1 | 38.768 | 276 | 166 | 3 | 14 | 287 | 38 | 312 | 1.39e-65 | 210 |
| Msa1165760 | AT1G52760.1 | 38.516 | 283 | 171 | 3 | 9 | 289 | 41 | 322 | 4.13e-65 | 209 |
| Msa1165760 | AT5G19290.1 | 34.471 | 293 | 188 | 3 | 6 | 295 | 30 | 321 | 6.98e-61 | 198 |
| Msa1165760 | AT1G73480.1 | 33.214 | 280 | 171 | 9 | 16 | 290 | 194 | 462 | 9.05e-39 | 143 |
| Msa1165760 | AT1G18360.1 | 33.333 | 279 | 173 | 7 | 16 | 290 | 112 | 381 | 3.43e-37 | 137 |
| Msa1165760 | AT5G11650.1 | 32.130 | 277 | 172 | 9 | 16 | 287 | 110 | 375 | 9.19e-35 | 131 |
| Msa1165760 | AT2G39410.1 | 55.682 | 88 | 38 | 1 | 4 | 90 | 7 | 94 | 8.73e-30 | 110 |
| Msa1165760 | AT5G11650.2 | 25.510 | 196 | 133 | 7 | 16 | 206 | 110 | 297 | 7.18e-14 | 71.6 |
Find 78 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATGCCCTGCTTACTTC+TGG | 0.212230 | 7_4:-57747623 | None:intergenic |
| TTCAGTTCTCCAAGAGTATA+AGG | 0.225869 | 7_4:+57746184 | Msa1165760:intron |
| TACACCATACACAGCATATT+TGG | 0.251718 | 7_4:-57745979 | None:intergenic |
| TGCTGGTTCTTAACATTTCT+AGG | 0.256347 | 7_4:-57746816 | None:intergenic |
| GATCGATTAACTGGTTGATA+TGG | 0.285048 | 7_4:+57742117 | Msa1165760:exon |
| CAGATCAATCACTTGTTCAT+AGG | 0.325445 | 7_4:+57742068 | Msa1165760:five_prime_UTR |
| AAACCTCACCCTTTCTCGTT+TGG | 0.334146 | 7_4:-57746613 | None:intergenic |
| AGTTGATCAGATCGATTAAC+TGG | 0.336765 | 7_4:+57742108 | Msa1165760:five_prime_UTR |
| TGCATAGTTAACCTTGTATA+AGG | 0.346053 | 7_4:-57746854 | None:intergenic |
| ACATAATGGCAACCATTTAC+AGG | 0.354248 | 7_4:-57742461 | None:intergenic |
| GTAACATGCATCAGGAGTTC+TGG | 0.390797 | 7_4:+57742410 | Msa1165760:intron |
| TCGTTTGGCCGGATCTTTGA+AGG | 0.412045 | 7_4:-57746598 | None:intergenic |
| GTTAAACCATGCCACATTCC+AGG | 0.412914 | 7_4:-57747686 | None:intergenic |
| TCAGTTCTCCAAGAGTATAA+GGG | 0.415803 | 7_4:+57746185 | Msa1165760:intron |
| ATAATGCCCTGCTTACTTCT+GGG | 0.425265 | 7_4:-57747622 | None:intergenic |
| TCATGGTTACAAGTCTCAAT+TGG | 0.427472 | 7_4:-57747806 | None:intergenic |
| CCTTGTCGCGCCCATGTGTA+AGG | 0.433319 | 7_4:+57746298 | Msa1165760:CDS |
| ACATCATGAACCTACATTCA+TGG | 0.434009 | 7_4:-57747980 | None:intergenic |
| ATTATGTTCTCCAAAGGCTC+TGG | 0.439440 | 7_4:+57742477 | Msa1165760:CDS |
| AAAATTGATGACATCCTTTG+TGG | 0.443208 | 7_4:-57746574 | None:intergenic |
| AGACTATGAAACAATCTCAT+AGG | 0.443501 | 7_4:+57747864 | Msa1165760:CDS |
| GTTCTTGTATGGAGAGTCCA+TGG | 0.446963 | 7_4:+57746217 | Msa1165760:CDS |
| AATTGGATGTGTAGAATCAT+AGG | 0.453394 | 7_4:-57747789 | None:intergenic |
| GCTGGTTCTTAACATTTCTA+GGG | 0.456674 | 7_4:-57746815 | None:intergenic |
| CTCACCCTTTCTCGTTTGGC+CGG | 0.464749 | 7_4:-57746609 | None:intergenic |
| TGAAAAGTTGCACTCCCCTT+GGG | 0.467830 | 7_4:-57742438 | None:intergenic |
| GGAAAAGCTAGGTTCTTGTA+TGG | 0.474126 | 7_4:+57746206 | Msa1165760:CDS |
| GTGAAAAGTTGCACTCCCCT+TGG | 0.475498 | 7_4:-57742439 | None:intergenic |
| AGAGCCTTTGGAGAACATAA+TGG | 0.478092 | 7_4:-57742475 | None:intergenic |
| AAGATCCGGCCAAACGAGAA+AGG | 0.479104 | 7_4:+57746604 | Msa1165760:CDS |
| ATTAGTATTTAATTAAGAGC+TGG | 0.479867 | 7_4:+57742023 | None:intergenic |
| AGTTATCTTTGTGGCTTGAA+AGG | 0.484287 | 7_4:+57747893 | Msa1165760:CDS |
| TGACAGACCCAGAAGTAAGC+AGG | 0.496194 | 7_4:+57747615 | Msa1165760:CDS |
| GTCTTTGCTGATGATACAAC+TGG | 0.500765 | 7_4:-57747845 | None:intergenic |
| AGAATCATAGGCAGCATTGT+TGG | 0.502217 | 7_4:-57747777 | None:intergenic |
| GTGATTGATCTGCAAGTGAA+AGG | 0.507057 | 7_4:-57742057 | None:intergenic |
| GTGGGAACTATCTTCCACTT+TGG | 0.507430 | 7_4:-57746555 | None:intergenic |
| ATGTGGCATGGTTTAACATC+TGG | 0.519462 | 7_4:+57747692 | Msa1165760:CDS |
| TGCAAGTGAAAGGGAAACCT+TGG | 0.525288 | 7_4:-57742047 | None:intergenic |
| TGATATACCAGGACAAGCCC+AGG | 0.533416 | 7_4:+57746782 | Msa1165760:CDS |
| AGATCCGGCCAAACGAGAAA+GGG | 0.539898 | 7_4:+57746605 | Msa1165760:CDS |
| AAATTGATGACATCCTTTGT+GGG | 0.543046 | 7_4:-57746573 | None:intergenic |
| TGATTGATCTGCAAGTGAAA+GGG | 0.548164 | 7_4:-57742056 | None:intergenic |
| ATCTGTTGCAGGTTATGGCA+TGG | 0.558684 | 7_4:+57742791 | Msa1165760:intron |
| GGTGTCTTCAAGATTCATGC+TGG | 0.560620 | 7_4:-57746833 | None:intergenic |
| TCTTGAAGACACCTTATACA+AGG | 0.565278 | 7_4:+57746843 | Msa1165760:CDS |
| TTAAACCATGCCACATTCCA+GGG | 0.567753 | 7_4:-57747685 | None:intergenic |
| TACAACGTGTACCTTACACA+TGG | 0.570866 | 7_4:-57746309 | None:intergenic |
| AGGAGTTCTGGAGGAACCCA+AGG | 0.572295 | 7_4:+57742422 | Msa1165760:intron |
| GACAGACCCAGAAGTAAGCA+GGG | 0.576720 | 7_4:+57747616 | Msa1165760:CDS |
| TGTGCCAAATATGCTGTGTA+TGG | 0.584688 | 7_4:+57745975 | Msa1165760:CDS |
| AAGAGTATAAGGGAAAAGCT+AGG | 0.585965 | 7_4:+57746195 | Msa1165760:CDS |
| TAGACTAACTGCTCCACCCA+TGG | 0.587925 | 7_4:-57746234 | None:intergenic |
| TTTCATTCTAATTTGCTGAG+TGG | 0.595665 | 7_4:-57747931 | None:intergenic |
| CCTTACACATGGGCGCGACA+AGG | 0.597684 | 7_4:-57746298 | None:intergenic |
| GTTGCCATTATGTTCTCCAA+AGG | 0.597843 | 7_4:+57742471 | Msa1165760:CDS |
| TTTAATTAAGAGCTGGACCA+AGG | 0.598870 | 7_4:+57742030 | Msa1165760:five_prime_UTR |
| TTCTTGTATGGAGAGTCCAT+GGG | 0.602502 | 7_4:+57746218 | Msa1165760:CDS |
| GAGTGCAGTCGTTTCATGAG+AGG | 0.608720 | 7_4:+57742813 | Msa1165760:CDS |
| GAAGGACATGGACAATCTGA+AGG | 0.609980 | 7_4:+57746008 | Msa1165760:CDS |
| TTGTATGGAGAGTCCATGGG+TGG | 0.611978 | 7_4:+57746221 | Msa1165760:CDS |
| TTGAAGATATCATACCAAAG+TGG | 0.612746 | 7_4:+57746541 | Msa1165760:CDS |
| TTAAATTGTACCCTGGAATG+TGG | 0.615904 | 7_4:+57747675 | Msa1165760:CDS |
| AGAATGAAATAATTACACTC+TGG | 0.620611 | 7_4:+57747945 | Msa1165760:exon |
| ACAACGTGTACCTTACACAT+GGG | 0.623130 | 7_4:-57746308 | None:intergenic |
| TCAATATGTTGATGACAACT+TGG | 0.624135 | 7_4:-57746512 | None:intergenic |
| GTGTCAATGTCTCATTGTCA+TGG | 0.624411 | 7_4:-57747823 | None:intergenic |
| AAGACAATTAAATTGTACCC+TGG | 0.629319 | 7_4:+57747668 | Msa1165760:CDS |
| GTGTATGGTGTAGATTATGA+AGG | 0.634571 | 7_4:+57745990 | Msa1165760:CDS |
| TTGACTGTGACCATGAATGT+AGG | 0.636251 | 7_4:+57747970 | Msa1165760:three_prime_UTR |
| GGTGTAGATTATGAAGGACA+TGG | 0.638840 | 7_4:+57745996 | Msa1165760:CDS |
| TTGTACCCTGGAATGTGGCA+TGG | 0.642467 | 7_4:+57747680 | Msa1165760:CDS |
| GGAGTTCTGGAGGAACCCAA+GGG | 0.647003 | 7_4:+57742423 | Msa1165760:intron |
| ACATGCATCAGGAGTTCTGG+AGG | 0.672710 | 7_4:+57742413 | Msa1165760:intron |
| GTGGAAGATAGTTCCCACAA+AGG | 0.681811 | 7_4:+57746560 | Msa1165760:CDS |
| ATGTTGATGACAACTTGGTG+TGG | 0.690265 | 7_4:-57746507 | None:intergenic |
| GTACTACAGAATGTGGAGTG+CGG | 0.724286 | 7_4:+57745946 | Msa1165760:intron |
| GAGTTCTGGAGGAACCCAAG+GGG | 0.724868 | 7_4:+57742424 | Msa1165760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTAAATTTTTTATGAAA+TGG | + | chr7_4:57742297-57742316 | Msa1165760:intron | 10.0% |
| !! | GCTAATTAATATTAATATTA+TGG | + | chr7_4:57742370-57742389 | Msa1165760:intron | 10.0% |
| !!! | TGTCTATTAATAAAATTTTA+TGG | + | chr7_4:57742528-57742547 | Msa1165760:intron | 10.0% |
| !! | ATTAGAGATAAATAAAATTT+GGG | - | chr7_4:57742722-57742741 | None:intergenic | 10.0% |
| !! | AATTAGAGATAAATAAAATT+TGG | - | chr7_4:57742723-57742742 | None:intergenic | 10.0% |
| !! | AATTATAATAAATAAAGAAG+GGG | - | chr7_4:57743194-57743213 | None:intergenic | 10.0% |
| !!! | TTTTATTGTTTTAATCTTTA+TGG | - | chr7_4:57743235-57743254 | None:intergenic | 10.0% |
| !! | ATAAAGATTAAAACAATAAA+AGG | + | chr7_4:57743234-57743253 | Msa1165760:intron | 10.0% |
| !! | TGTAAAAAAAAAAATCTATA+TGG | - | chr7_4:57743465-57743484 | None:intergenic | 10.0% |
| !! | AAATGTATTATTATCTATAT+GGG | - | chr7_4:57743494-57743513 | None:intergenic | 10.0% |
| !! | AAAATGTATTATTATCTATA+TGG | - | chr7_4:57743495-57743514 | None:intergenic | 10.0% |
| !!! | ATATAGATAATAATACATTT+TGG | + | chr7_4:57743494-57743513 | Msa1165760:intron | 10.0% |
| !! | AAAATGTATTATTATCTATA+CGG | - | chr7_4:57743495-57743514 | None:intergenic | 10.0% |
| !!! | TTTTAATTGATTTTACATTT+AGG | + | chr7_4:57744687-57744706 | Msa1165760:intron | 10.0% |
| !!! | TTTAATTGATTTTACATTTA+GGG | + | chr7_4:57744688-57744707 | Msa1165760:intron | 10.0% |
| !! | ATAAAAAAAAATCTTAAATG+AGG | - | chr7_4:57745081-57745100 | None:intergenic | 10.0% |
| !! | TTTCAAAAAAAAAAAAAGTA+TGG | - | chr7_4:57745165-57745184 | None:intergenic | 10.0% |
| !!! | ATACTTTTTTTTTTTTTGAA+AGG | + | chr7_4:57745164-57745183 | Msa1165760:intron | 10.0% |
| !!! | AAAAATAGTTTATCATTTTT+TGG | - | chr7_4:57745404-57745423 | None:intergenic | 10.0% |
| !! | AAAAAAAACATATAGAATTA+TGG | + | chr7_4:57745473-57745492 | Msa1165760:intron | 10.0% |
| !! | AAAAAAACATATAGAATTAT+GGG | + | chr7_4:57745474-57745493 | Msa1165760:intron | 10.0% |
| !!! | GGTTAATTTTTTTTTTTTTT+TGG | + | chr7_4:57745769-57745788 | Msa1165760:intron | 10.0% |
| !!! | TTTTATTTAATCTATAATTG+AGG | + | chr7_4:57746668-57746687 | Msa1165760:intron | 10.0% |
| !!! | TATTTCAAATTTTCCTTTTT+TGG | + | chr7_4:57742659-57742678 | Msa1165760:intron | 15.0% |
| !! | TTCAAATATAACCAAAAAAA+GGG | - | chr7_4:57742900-57742919 | None:intergenic | 15.0% |
| !!! | TATTTCTCTAAAAAAATTGA+TGG | - | chr7_4:57743378-57743397 | None:intergenic | 15.0% |
| !! | AAATGTATTATTATCTATAC+GGG | - | chr7_4:57743529-57743548 | None:intergenic | 15.0% |
| !!! | GTATAGATAATAATACATTT+TGG | + | chr7_4:57743529-57743548 | Msa1165760:intron | 15.0% |
| !!! | AATCATGCATATTTTTTTTA+AGG | + | chr7_4:57743869-57743888 | Msa1165760:intron | 15.0% |
| !! | ATTAAAATTTAAACATGCTT+TGG | + | chr7_4:57743968-57743987 | Msa1165760:intron | 15.0% |
| !! | TTAAAATTTAAACATGCTTT+GGG | + | chr7_4:57743969-57743988 | Msa1165760:intron | 15.0% |
| !!! | GTACTAGTTTAATTTTATAA+TGG | + | chr7_4:57744393-57744412 | Msa1165760:intron | 15.0% |
| !!! | TGAAATTTTTCTTTGAAATT+TGG | + | chr7_4:57744739-57744758 | Msa1165760:intron | 15.0% |
| !! | AATATTTAATCAATACAGTT+TGG | + | chr7_4:57745232-57745251 | Msa1165760:intron | 15.0% |
| !! | ATATGGATTTATAATTAACT+TGG | - | chr7_4:57746404-57746423 | None:intergenic | 15.0% |
| !!! | TTTTCTAAACAAAAAGTATA+TGG | - | chr7_4:57746421-57746440 | None:intergenic | 15.0% |
| !! | TAAACAATTTAACGTTTATT+TGG | - | chr7_4:57747421-57747440 | None:intergenic | 15.0% |
| !!! | AAAATCAAACTATTTTCACT+GGG | - | chr7_4:57742261-57742280 | None:intergenic | 20.0% |
| !! | TCAAATATAACCAAAAAAAG+GGG | - | chr7_4:57742899-57742918 | None:intergenic | 20.0% |
| !! | CTTCAAATATAACCAAAAAA+AGG | - | chr7_4:57742901-57742920 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTATATTTGAAGT+CGG | + | chr7_4:57742902-57742921 | Msa1165760:intron | 20.0% |
| !! | GTTTAAAGGAAATAAACTAA+GGG | + | chr7_4:57742924-57742943 | Msa1165760:intron | 20.0% |
| !! | TAAAACAAAAAGGGTAATAA+TGG | - | chr7_4:57743155-57743174 | None:intergenic | 20.0% |
| !! | GGATTTACATAAAACAAAAA+GGG | - | chr7_4:57743164-57743183 | None:intergenic | 20.0% |
| !! | ACAATAAAAGGAATAATTCT+AGG | + | chr7_4:57743246-57743265 | Msa1165760:intron | 20.0% |
| !! | AAACAGTTATCGTAAAAAAA+TGG | - | chr7_4:57743333-57743352 | None:intergenic | 20.0% |
| !!! | ATATTCCATATAGATTTTTG+AGG | + | chr7_4:57743432-57743451 | Msa1165760:intron | 20.0% |
| !! | TATTACCTCAAAAATCTATA+TGG | - | chr7_4:57743440-57743459 | None:intergenic | 20.0% |
| !! | TAAATGTAAAATGACAACAA+AGG | - | chr7_4:57743687-57743706 | None:intergenic | 20.0% |
| !! | TAAAATTTAAACATGCTTTG+GGG | + | chr7_4:57743970-57743989 | Msa1165760:intron | 20.0% |
| !!! | TTTTTCTTTCTTTTTTTGAG+AGG | - | chr7_4:57744163-57744182 | None:intergenic | 20.0% |
| !! | AAGATAGACTTAAATCTTTA+TGG | + | chr7_4:57744186-57744205 | Msa1165760:intron | 20.0% |
| !! | AAAATTCGTCATCTAATAAA+TGG | - | chr7_4:57744472-57744491 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGAACAAGAAAAA+TGG | - | chr7_4:57744645-57744664 | None:intergenic | 20.0% |
| !!! | AGAGAGATATATTTACATTT+TGG | + | chr7_4:57744662-57744681 | Msa1165760:intron | 20.0% |
| !!! | AATTTTTCTTTGAAATTTGG+TGG | + | chr7_4:57744742-57744761 | Msa1165760:intron | 20.0% |
| !!! | TCATATAAATAAGAGTATTG+TGG | - | chr7_4:57744829-57744848 | None:intergenic | 20.0% |
| !!! | TTCTTTTTACAATTTGAAAG+TGG | + | chr7_4:57744867-57744886 | Msa1165760:intron | 20.0% |
| !!! | AAAAAAAAAGTATGGTATGT+TGG | - | chr7_4:57745157-57745176 | None:intergenic | 20.0% |
| !!! | TAATTTTAAGTATGGTATGT+TGG | - | chr7_4:57745191-57745210 | None:intergenic | 20.0% |
| !!! | TAGCATAGTAATTTTAAGTA+TGG | - | chr7_4:57745199-57745218 | None:intergenic | 20.0% |
| !! | GTTTGGAAAATAGAATAAAT+TGG | + | chr7_4:57745249-57745268 | Msa1165760:intron | 20.0% |
| !! | ATTGTTCTACAAATTTACTT+AGG | - | chr7_4:57745316-57745335 | None:intergenic | 20.0% |
| !! | CATTTCTTATGAAGTAATTA+AGG | + | chr7_4:57745624-57745643 | Msa1165760:intron | 20.0% |
| !!! | ATTTTCTCATGAAAAATTCA+TGG | + | chr7_4:57745748-57745767 | Msa1165760:intron | 20.0% |
| !!! | ATAAGACACATTTTTTTCTA+AGG | - | chr7_4:57745811-57745830 | None:intergenic | 20.0% |
| !! | AGTACTATAGATATATGTTT+AGG | + | chr7_4:57745890-57745909 | Msa1165760:intron | 20.0% |
| !! | GTACTATAGATATATGTTTA+GGG | + | chr7_4:57745891-57745910 | Msa1165760:intron | 20.0% |
| !! | AATGAATGATGAAACTATAA+TGG | - | chr7_4:57746153-57746172 | None:intergenic | 20.0% |
| !! | GTAAAAAATCTTTACATTAC+AGG | + | chr7_4:57746370-57746389 | Msa1165760:intron | 20.0% |
| !! | CTAAAGTAAACATGAAAATA+TGG | + | chr7_4:57746449-57746468 | Msa1165760:intron | 20.0% |
| !!! | ACTTATTTGAACTTTTTTTG+AGG | + | chr7_4:57746923-57746942 | Msa1165760:intron | 20.0% |
| !!! | CTTATTTGAACTTTTTTTGA+GGG | + | chr7_4:57746924-57746943 | Msa1165760:intron | 20.0% |
| !!! | ACTTATTTCTATAAATTCTC+CGG | + | chr7_4:57747037-57747056 | Msa1165760:intron | 20.0% |
| !!! | CAAATTGTTTTTCTTTTAAC+CGG | + | chr7_4:57747202-57747221 | Msa1165760:intron | 20.0% |
| !! | AAAATCAATCCTATTCAAAA+AGG | - | chr7_4:57747231-57747250 | None:intergenic | 20.0% |
| !!! | ATCACTTTTAGTTTTTGTTA+CGG | + | chr7_4:57747390-57747409 | Msa1165760:intron | 20.0% |
| !!! | ATAATCAAGTTACCTTTTTT+CGG | + | chr7_4:57747454-57747473 | Msa1165760:intron | 20.0% |
| !!! | GTGTTAATTTGAATATTTGT+TGG | - | chr7_4:57747484-57747503 | None:intergenic | 20.0% |
| !! | CATATCATACCTAATTTATT+TGG | + | chr7_4:57747525-57747544 | Msa1165760:intron | 20.0% |
| !! | CAAAATCAAACTATTTTCAC+TGG | - | chr7_4:57742262-57742281 | None:intergenic | 25.0% |
| !! | TGATTTTGTAACCTTATGAA+CGG | + | chr7_4:57742274-57742293 | Msa1165760:intron | 25.0% |
| ! | AAATTTAAACTCCGTTCATA+AGG | - | chr7_4:57742288-57742307 | None:intergenic | 25.0% |
| ! | TTTCATTAAATATCTGTTGC+AGG | + | chr7_4:57742780-57742799 | Msa1165760:intron | 25.0% |
| ! | TTGATTGATAAACAAGTTAC+TGG | - | chr7_4:57742853-57742872 | None:intergenic | 25.0% |
| ! | AAATATAACCAAAAAAAGGG+GGG | - | chr7_4:57742897-57742916 | None:intergenic | 25.0% |
| ! | CAAATATAACCAAAAAAAGG+GGG | - | chr7_4:57742898-57742917 | None:intergenic | 25.0% |
| !! | TATATTTGAAGTCGGTTTAA+AGG | + | chr7_4:57742910-57742929 | Msa1165760:intron | 25.0% |
| ! | GGTTTAAAGGAAATAAACTA+AGG | + | chr7_4:57742923-57742942 | Msa1165760:intron | 25.0% |
| ! | TTGACAAAAAAAACTCTGTT+TGG | + | chr7_4:57743007-57743026 | Msa1165760:intron | 25.0% |
| ! | CGGATTTACATAAAACAAAA+AGG | - | chr7_4:57743165-57743184 | None:intergenic | 25.0% |
| ! | AAATAAAGAAGGGGTAAAAA+CGG | - | chr7_4:57743185-57743204 | None:intergenic | 25.0% |
| !!! | TAATTCTAGGATGTTTTTTC+AGG | + | chr7_4:57743259-57743278 | Msa1165760:intron | 25.0% |
| !!! | AATTCTAGGATGTTTTTTCA+GGG | + | chr7_4:57743260-57743279 | Msa1165760:intron | 25.0% |
| !! | CATTTGTATTCTTTTCTCAT+TGG | - | chr7_4:57744283-57744302 | None:intergenic | 25.0% |
| ! | AATACAAATGAGCACTAATT+TGG | + | chr7_4:57744293-57744312 | Msa1165760:intron | 25.0% |
| !!! | TTGTGCATTTTTTTTCCAAT+CGG | - | chr7_4:57744333-57744352 | None:intergenic | 25.0% |
| ! | AACAAAATTCATCACTTAGT+TGG | - | chr7_4:57744503-57744522 | None:intergenic | 25.0% |
| ! | TAACGACTACATATTTAGTT+GGG | - | chr7_4:57744986-57745005 | None:intergenic | 25.0% |
| ! | AAAACATATAGAATTATGGG+AGG | + | chr7_4:57745477-57745496 | Msa1165760:intron | 25.0% |
| ! | AAACATATAGAATTATGGGA+GGG | + | chr7_4:57745478-57745497 | Msa1165760:intron | 25.0% |
| ! | AACCCTGAAAAAACAAAATA+TGG | + | chr7_4:57745566-57745585 | Msa1165760:intron | 25.0% |
| !!! | TGCCATATTTTGTTTTTTCA+GGG | - | chr7_4:57745571-57745590 | None:intergenic | 25.0% |
| ! | TTCAGATATATTTACGAGAA+AGG | - | chr7_4:57746646-57746665 | None:intergenic | 25.0% |
| !!! | CTTATTTCTATAAATTCTCC+GGG | + | chr7_4:57747038-57747057 | Msa1165760:intron | 25.0% |
| !!! | GTGTATGTTTGTTTCTATTT+TGG | + | chr7_4:57747172-57747191 | Msa1165760:intron | 25.0% |
| !!! | TATGTTTGTTTCTATTTTGG+AGG | + | chr7_4:57747175-57747194 | Msa1165760:intron | 25.0% |
| ! | CGGTTAAAAGAAAAACAATT+TGG | - | chr7_4:57747204-57747223 | None:intergenic | 25.0% |
| !! | AAGTTAGAATCAATTTTGGA+AGG | - | chr7_4:57747254-57747273 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTAGAATCAATTT+TGG | - | chr7_4:57747258-57747277 | None:intergenic | 25.0% |
| ! | GGCTAAAAATCAAAATTTAG+AGG | - | chr7_4:57747300-57747319 | None:intergenic | 25.0% |
| ! | AATGTGAATCACTTTATGTT+TGG | - | chr7_4:57747366-57747385 | None:intergenic | 25.0% |
| ! | ACCTAATTTATTTGGTACTT+TGG | + | chr7_4:57747533-57747552 | Msa1165760:intron | 25.0% |
| ! | CCTAATTTATTTGGTACTTT+GGG | + | chr7_4:57747534-57747553 | Msa1165760:intron | 25.0% |
| ! | ATGCAATACAAAAAATGGAA+AGG | - | chr7_4:57747579-57747598 | None:intergenic | 25.0% |
| !!! | TTTCCATTTTTTGTATTGCA+TGG | + | chr7_4:57747578-57747597 | Msa1165760:CDS | 25.0% |
| !!! | TTTTTGAAGACATCATAACA+TGG | + | chr7_4:57747741-57747760 | Msa1165760:CDS | 25.0% |
| ! | AGAATGAAATAATTACACTC+TGG | + | chr7_4:57747945-57747964 | Msa1165760:exon | 25.0% |
| TATTATGTTTATGTGTTCCG+AGG | + | chr7_4:57742217-57742236 | Msa1165760:intron | 30.0% | |
| TTATATACGTAACATGCATC+AGG | + | chr7_4:57742402-57742421 | Msa1165760:intron | 30.0% | |
| AGACAGTGAATTAATTACCA+TGG | - | chr7_4:57742513-57742532 | None:intergenic | 30.0% | |
| CTAGTTAAGGAATCCAAAAA+AGG | - | chr7_4:57742675-57742694 | None:intergenic | 30.0% | |
| ! | TTTTCTCTCTCTATCTTAGA+AGG | + | chr7_4:57742741-57742760 | Msa1165760:intron | 30.0% |
| TAAATATCTGTTGCAGGTTA+TGG | + | chr7_4:57742786-57742805 | Msa1165760:intron | 30.0% | |
| AATATAACCAAAAAAAGGGG+GGG | - | chr7_4:57742896-57742915 | None:intergenic | 30.0% | |
| AAATAAACTAAGGGTCTGTT+TGG | + | chr7_4:57742933-57742952 | Msa1165760:intron | 30.0% | |
| ! | CTATAAGCTATAAGCTCTTT+TGG | - | chr7_4:57742967-57742986 | None:intergenic | 30.0% |
| !!! | ATTGCACTTCTTTTTTGACA+AGG | - | chr7_4:57743307-57743326 | None:intergenic | 30.0% |
| TCTATATGTGTTATCAACGA+CGG | - | chr7_4:57743403-57743422 | None:intergenic | 30.0% | |
| !! | TCGTTGATAACACATATAGA+TGG | + | chr7_4:57743403-57743422 | Msa1165760:intron | 30.0% |
| ! | GAAGTGTTTGGTAAAATTAG+CGG | - | chr7_4:57743723-57743742 | None:intergenic | 30.0% |
| ACTCTGTTTGGTAAAAATAG+CGG | - | chr7_4:57743842-57743861 | None:intergenic | 30.0% | |
| !! | TGATTTGTTTAGACTCTGTT+TGG | - | chr7_4:57743854-57743873 | None:intergenic | 30.0% |
| CACAATTTCTATTGCCAATT+TGG | - | chr7_4:57743927-57743946 | None:intergenic | 30.0% | |
| ! | TTACTTGTCAGTTTTCTAGA+AGG | + | chr7_4:57744244-57744263 | Msa1165760:intron | 30.0% |
| AATGAGCACTAATTTGGTAA+CGG | + | chr7_4:57744299-57744318 | Msa1165760:intron | 30.0% | |
| AATGGATGTCTACCTATATT+TGG | + | chr7_4:57744411-57744430 | Msa1165760:intron | 30.0% | |
| GCTGAACTAAAACCAAATAT+AGG | - | chr7_4:57744426-57744445 | None:intergenic | 30.0% | |
| GTAACGACTACATATTTAGT+TGG | - | chr7_4:57744987-57745006 | None:intergenic | 30.0% | |
| AACATATAGAATTATGGGAG+GGG | + | chr7_4:57745479-57745498 | Msa1165760:intron | 30.0% | |
| !!! | CTGCCATATTTTGTTTTTTC+AGG | - | chr7_4:57745572-57745591 | None:intergenic | 30.0% |
| GGTTTATCTCTAGCTAATTA+TGG | + | chr7_4:57745912-57745931 | Msa1165760:intron | 30.0% | |
| TACACTCAAAAGATTAGACA+AGG | - | chr7_4:57746119-57746138 | None:intergenic | 30.0% | |
| !! | TAGTCTACTTTTGCATCAAA+AGG | + | chr7_4:57746250-57746269 | Msa1165760:CDS | 30.0% |
| !! | TCAATATGTTGATGACAACT+TGG | - | chr7_4:57746515-57746534 | None:intergenic | 30.0% |
| TTGAAGATATCATACCAAAG+TGG | + | chr7_4:57746541-57746560 | Msa1165760:CDS | 30.0% | |
| ! | AAATTGATGACATCCTTTGT+GGG | - | chr7_4:57746576-57746595 | None:intergenic | 30.0% |
| ! | AAAATTGATGACATCCTTTG+TGG | - | chr7_4:57746577-57746596 | None:intergenic | 30.0% |
| !! | GAAAAACAAGTTGATATACC+AGG | + | chr7_4:57746771-57746790 | Msa1165760:CDS | 30.0% |
| TGCATAGTTAACCTTGTATA+AGG | - | chr7_4:57746857-57746876 | None:intergenic | 30.0% | |
| ! | TGAGTTGAACAAGAAAATTG+AGG | - | chr7_4:57747321-57747340 | None:intergenic | 30.0% |
| ! | CCCAAAGTACCAAATAAATT+AGG | - | chr7_4:57747537-57747556 | None:intergenic | 30.0% |
| AATTTATTTGGTACTTTGGG+TGG | + | chr7_4:57747537-57747556 | Msa1165760:intron | 30.0% | |
| TCTCCATGCAATACAAAAAA+TGG | - | chr7_4:57747584-57747603 | None:intergenic | 30.0% | |
| AAGACAATTAAATTGTACCC+TGG | + | chr7_4:57747668-57747687 | Msa1165760:CDS | 30.0% | |
| !!! | ACTTTTTCAATGTTGTCATC+TGG | - | chr7_4:57747722-57747741 | None:intergenic | 30.0% |
| AATTGGATGTGTAGAATCAT+AGG | - | chr7_4:57747792-57747811 | None:intergenic | 30.0% | |
| AGACTATGAAACAATCTCAT+AGG | + | chr7_4:57747864-57747883 | Msa1165760:CDS | 30.0% | |
| !! | TTTCATTCTAATTTGCTGAG+TGG | - | chr7_4:57747934-57747953 | None:intergenic | 30.0% |
| TTTAATTAAGAGCTGGACCA+AGG | + | chr7_4:57742030-57742049 | Msa1165760:five_prime_UTR | 35.0% | |
| TGATTGATCTGCAAGTGAAA+GGG | - | chr7_4:57742059-57742078 | None:intergenic | 35.0% | |
| CAGATCAATCACTTGTTCAT+AGG | + | chr7_4:57742068-57742087 | Msa1165760:five_prime_UTR | 35.0% | |
| AGTTGATCAGATCGATTAAC+TGG | + | chr7_4:57742108-57742127 | Msa1165760:five_prime_UTR | 35.0% | |
| ! | GATCGATTAACTGGTTGATA+TGG | + | chr7_4:57742117-57742136 | Msa1165760:exon | 35.0% |
| !! | TATAACTCGTGAAAGTACCT+CGG | - | chr7_4:57742237-57742256 | None:intergenic | 35.0% |
| ! | TGCAACTTTTCACCTGTAAA+TGG | + | chr7_4:57742449-57742468 | Msa1165760:CDS | 35.0% |
| ACATAATGGCAACCATTTAC+AGG | - | chr7_4:57742464-57742483 | None:intergenic | 35.0% | |
| AAATGTTAACCAATGTCCCT+AGG | + | chr7_4:57742552-57742571 | Msa1165760:intron | 35.0% | |
| AATGTTAACCAATGTCCCTA+GGG | + | chr7_4:57742553-57742572 | Msa1165760:intron | 35.0% | |
| ! | TAAGCTATAAGCTCTTTTGG+TGG | - | chr7_4:57742964-57742983 | None:intergenic | 35.0% |
| ! | GATAAGCTAGTTGAAGTGTT+TGG | - | chr7_4:57743735-57743754 | None:intergenic | 35.0% |
| ! | GTATTCTTTTCTCATTGGAG+AGG | - | chr7_4:57744278-57744297 | None:intergenic | 35.0% |
| !!! | TGCATTTTTTTTCCAATCGG+AGG | - | chr7_4:57744330-57744349 | None:intergenic | 35.0% |
| CTAATAAATGGACACCAGAT+CGG | - | chr7_4:57744460-57744479 | None:intergenic | 35.0% | |
| ! | TTCGTACACCATTTTCTGAT+GGG | - | chr7_4:57744902-57744921 | None:intergenic | 35.0% |
| ! | TTTCGTACACCATTTTCTGA+TGG | - | chr7_4:57744903-57744922 | None:intergenic | 35.0% |
| GACTACATATTTAGTTGGGT+TGG | - | chr7_4:57744982-57745001 | None:intergenic | 35.0% | |
| ACATATAGAATTATGGGAGG+GGG | + | chr7_4:57745480-57745499 | Msa1165760:intron | 35.0% | |
| ! | CTGACACTAGATTTTTCGTT+GGG | - | chr7_4:57745518-57745537 | None:intergenic | 35.0% |
| GGAACAGTTTAACAGTAAGA+AGG | + | chr7_4:57745671-57745690 | Msa1165760:intron | 35.0% | |
| TTTAACAGTAAGAAGGACGA+TGG | + | chr7_4:57745678-57745697 | Msa1165760:intron | 35.0% | |
| ! | ACGATGGTTGTTTGTGTTTT+TGG | + | chr7_4:57745694-57745713 | Msa1165760:intron | 35.0% |
| ACAAGTTAACATGATCGAGA+AGG | + | chr7_4:57745842-57745861 | Msa1165760:intron | 35.0% | |
| AGCTAATTATGGTAGCATGA+TGG | + | chr7_4:57745923-57745942 | Msa1165760:intron | 35.0% | |
| GCTAATTATGGTAGCATGAT+GGG | + | chr7_4:57745924-57745943 | Msa1165760:intron | 35.0% | |
| TACACCATACACAGCATATT+TGG | - | chr7_4:57745982-57746001 | None:intergenic | 35.0% | |
| GTGTATGGTGTAGATTATGA+AGG | + | chr7_4:57745990-57746009 | Msa1165760:CDS | 35.0% | |
| !!! | GACTTTTTCAAGTCAGTTAG+TGG | + | chr7_4:57746080-57746099 | Msa1165760:CDS | 35.0% |
| ! | TTTCAAGTCAGTTAGTGGTA+TGG | + | chr7_4:57746085-57746104 | Msa1165760:intron | 35.0% |
| ! | TTCAGTTCTCCAAGAGTATA+AGG | + | chr7_4:57746184-57746203 | Msa1165760:intron | 35.0% |
| ! | TCAGTTCTCCAAGAGTATAA+GGG | + | chr7_4:57746185-57746204 | Msa1165760:intron | 35.0% |
| ! | TAGCTTTTCCCTTATACTCT+TGG | - | chr7_4:57746196-57746215 | None:intergenic | 35.0% |
| ! | AAGAGTATAAGGGAAAAGCT+AGG | + | chr7_4:57746195-57746214 | Msa1165760:CDS | 35.0% |
| ! | ATCAAAAGGACCCTTCTTTT+TGG | + | chr7_4:57746264-57746283 | Msa1165760:CDS | 35.0% |
| ! | TCAAAAGGACCCTTCTTTTT+GGG | + | chr7_4:57746265-57746284 | Msa1165760:CDS | 35.0% |
| ! | CAATTTTGCCTTCAAAGATC+CGG | + | chr7_4:57746590-57746609 | Msa1165760:CDS | 35.0% |
| TATACCACTTCCTTTGACAA+TGG | + | chr7_4:57746737-57746756 | Msa1165760:intron | 35.0% | |
| TTATCTGCAACCATTGTCAA+AGG | - | chr7_4:57746750-57746769 | None:intergenic | 35.0% | |
| TTTGACAATGGTTGCAGATA+AGG | + | chr7_4:57746749-57746768 | Msa1165760:intron | 35.0% | |
| ! | GCTGGTTCTTAACATTTCTA+GGG | - | chr7_4:57746818-57746837 | None:intergenic | 35.0% |
| !! | TGCTGGTTCTTAACATTTCT+AGG | - | chr7_4:57746819-57746838 | None:intergenic | 35.0% |
| TCTTGAAGACACCTTATACA+AGG | + | chr7_4:57746843-57746862 | Msa1165760:CDS | 35.0% | |
| ! | TAAGCATTGTTGAGACTGTT+TGG | + | chr7_4:57746976-57746995 | Msa1165760:intron | 35.0% |
| !! | TCCGGGATAACTTTTGAAAA+CGG | + | chr7_4:57747055-57747074 | Msa1165760:intron | 35.0% |
| !! | ATCCTATTCAAAAAGGCATC+CGG | - | chr7_4:57747224-57747243 | None:intergenic | 35.0% |
| TTAAATTGTACCCTGGAATG+TGG | + | chr7_4:57747675-57747694 | Msa1165760:CDS | 35.0% | |
| TCATGGTTACAAGTCTCAAT+TGG | - | chr7_4:57747809-57747828 | None:intergenic | 35.0% | |
| AGGCGAAAAAGTTATCTTTG+TGG | + | chr7_4:57747884-57747903 | Msa1165760:CDS | 35.0% | |
| AGTTATCTTTGTGGCTTGAA+AGG | + | chr7_4:57747893-57747912 | Msa1165760:CDS | 35.0% | |
| ACATCATGAACCTACATTCA+TGG | - | chr7_4:57747983-57748002 | None:intergenic | 35.0% | |
| GTGATTGATCTGCAAGTGAA+AGG | - | chr7_4:57742060-57742079 | None:intergenic | 40.0% | |
| GTTGCCATTATGTTCTCCAA+AGG | + | chr7_4:57742471-57742490 | Msa1165760:CDS | 40.0% | |
| ! | AGAGCCTTTGGAGAACATAA+TGG | - | chr7_4:57742478-57742497 | None:intergenic | 40.0% |
| ATTATGTTCTCCAAAGGCTC+TGG | + | chr7_4:57742477-57742496 | Msa1165760:CDS | 40.0% | |
| CAAAGAAAAACCAGAGCCTT+TGG | - | chr7_4:57742490-57742509 | None:intergenic | 40.0% | |
| TTTCCTTAACCAATGCCCTA+GGG | - | chr7_4:57742571-57742590 | None:intergenic | 40.0% | |
| AAAAAGGGGGGGAATAGAAA+AGG | - | chr7_4:57742885-57742904 | None:intergenic | 40.0% | |
| !!! | TTCTATTCCCCCCCTTTTTT+TGG | + | chr7_4:57742886-57742905 | Msa1165760:intron | 40.0% |
| AACTAAGGGTCTGTTTGGTA+AGG | + | chr7_4:57742938-57742957 | Msa1165760:intron | 40.0% | |
| AAATGCTCATGTCGCCAAAT+TGG | + | chr7_4:57743910-57743929 | Msa1165760:intron | 40.0% | |
| !! | CATGCTTTGGGGTCAATTAT+TGG | + | chr7_4:57743981-57744000 | Msa1165760:intron | 40.0% |
| !! | CTTGTCAGTTTTCTAGAAGG+TGG | + | chr7_4:57744247-57744266 | Msa1165760:intron | 40.0% |
| CACCAGATCGGTATCTTTAT+GGG | - | chr7_4:57744448-57744467 | None:intergenic | 40.0% | |
| ACACCAGATCGGTATCTTTA+TGG | - | chr7_4:57744449-57744468 | None:intergenic | 40.0% | |
| GTACCAACAACAGAACTTCA+GGG | + | chr7_4:57744710-57744729 | Msa1165760:intron | 40.0% | |
| ATACCCTGAAGTTCTGTTGT+TGG | - | chr7_4:57744716-57744735 | None:intergenic | 40.0% | |
| ! | TTTGGTGGTTCAAGCTTTCA+AGG | + | chr7_4:57744757-57744776 | Msa1165760:intron | 40.0% |
| GTGGGAATGGTTTAATGGTA+GGG | - | chr7_4:57744937-57744956 | None:intergenic | 40.0% | |
| TCTTCGTGGGAATGGTTTAA+TGG | - | chr7_4:57744942-57744961 | None:intergenic | 40.0% | |
| TGTATAGACGTGTCTCAAGT+AGG | + | chr7_4:57745031-57745050 | Msa1165760:intron | 40.0% | |
| ! | GCTGACACTAGATTTTTCGT+TGG | - | chr7_4:57745519-57745538 | None:intergenic | 40.0% |
| CGAAAAATCTAGTGTCAGCT+TGG | + | chr7_4:57745520-57745539 | Msa1165760:intron | 40.0% | |
| ! | TCGAGATCTAGAATGATCGT+TGG | + | chr7_4:57745593-57745612 | Msa1165760:intron | 40.0% |
| ! | GATCTAGAATGATCGTTGGT+TGG | + | chr7_4:57745597-57745616 | Msa1165760:intron | 40.0% |
| ! | GGTACTATGTCCTTTTGCTA+CGG | + | chr7_4:57745645-57745664 | Msa1165760:intron | 40.0% |
| ! | TATGTCCTTTTGCTACGGAA+GGG | + | chr7_4:57745650-57745669 | Msa1165760:intron | 40.0% |
| TCATGAGAAAATGTGACGAC+AGG | - | chr7_4:57745740-57745759 | None:intergenic | 40.0% | |
| !! | ATGATGGGTACTACAGAATG+TGG | + | chr7_4:57745939-57745958 | Msa1165760:intron | 40.0% |
| TGTGCCAAATATGCTGTGTA+TGG | + | chr7_4:57745975-57745994 | Msa1165760:CDS | 40.0% | |
| GGTGTAGATTATGAAGGACA+TGG | + | chr7_4:57745996-57746015 | Msa1165760:CDS | 40.0% | |
| GGAAAAGCTAGGTTCTTGTA+TGG | + | chr7_4:57746206-57746225 | Msa1165760:CDS | 40.0% | |
| TTCTTGTATGGAGAGTCCAT+GGG | + | chr7_4:57746218-57746237 | Msa1165760:CDS | 40.0% | |
| ACAACGTGTACCTTACACAT+GGG | - | chr7_4:57746311-57746330 | None:intergenic | 40.0% | |
| TACAACGTGTACCTTACACA+TGG | - | chr7_4:57746312-57746331 | None:intergenic | 40.0% | |
| !! | ATGTTGATGACAACTTGGTG+TGG | - | chr7_4:57746510-57746529 | None:intergenic | 40.0% |
| !!! | TCTAGGGCTGTTTTTAACCT+GGG | - | chr7_4:57746802-57746821 | None:intergenic | 40.0% |
| !!! | TTCTAGGGCTGTTTTTAACC+TGG | - | chr7_4:57746803-57746822 | None:intergenic | 40.0% |
| !! | GCCGTTTTCAAAAGTTATCC+CGG | - | chr7_4:57747059-57747078 | None:intergenic | 40.0% |
| ! | AACCGGATGCCTTTTTGAAT+AGG | + | chr7_4:57747219-57747238 | Msa1165760:intron | 40.0% |
| TTTGTTGGCAAGCCGAAAAA+AGG | - | chr7_4:57747469-57747488 | None:intergenic | 40.0% | |
| ATAATGCCCTGCTTACTTCT+GGG | - | chr7_4:57747625-57747644 | None:intergenic | 40.0% | |
| TATAATGCCCTGCTTACTTC+TGG | - | chr7_4:57747626-57747645 | None:intergenic | 40.0% | |
| TTAAACCATGCCACATTCCA+GGG | - | chr7_4:57747688-57747707 | None:intergenic | 40.0% | |
| ATGTGGCATGGTTTAACATC+TGG | + | chr7_4:57747692-57747711 | Msa1165760:CDS | 40.0% | |
| AGAATCATAGGCAGCATTGT+TGG | - | chr7_4:57747780-57747799 | None:intergenic | 40.0% | |
| GTGTCAATGTCTCATTGTCA+TGG | - | chr7_4:57747826-57747845 | None:intergenic | 40.0% | |
| GTCTTTGCTGATGATACAAC+TGG | - | chr7_4:57747848-57747867 | None:intergenic | 40.0% | |
| TTGACTGTGACCATGAATGT+AGG | + | chr7_4:57747970-57747989 | Msa1165760:three_prime_UTR | 40.0% | |
| TGCAAGTGAAAGGGAAACCT+TGG | - | chr7_4:57742050-57742069 | None:intergenic | 45.0% | |
| GTAACATGCATCAGGAGTTC+TGG | + | chr7_4:57742410-57742429 | Msa1165760:intron | 45.0% | |
| TGAAAAGTTGCACTCCCCTT+GGG | - | chr7_4:57742441-57742460 | None:intergenic | 45.0% | |
| !!! | GCTCTGGTTTTTCTTTGCCA+TGG | + | chr7_4:57742493-57742512 | Msa1165760:CDS | 45.0% |
| GTTTCCTTAACCAATGCCCT+AGG | - | chr7_4:57742572-57742591 | None:intergenic | 45.0% | |
| ATCTGTTGCAGGTTATGGCA+TGG | + | chr7_4:57742791-57742810 | Msa1165760:intron | 45.0% | |
| AGCCCATAAAGATACCGATC+TGG | + | chr7_4:57744443-57744462 | Msa1165760:intron | 45.0% | |
| GGTACCAACAACAGAACTTC+AGG | + | chr7_4:57744709-57744728 | Msa1165760:intron | 45.0% | |
| ! | GTACACCATTTTCTGATGGG+TGG | - | chr7_4:57744899-57744918 | None:intergenic | 45.0% |
| TGGTTTAATGGTAGGGACGA+AGG | - | chr7_4:57744930-57744949 | None:intergenic | 45.0% | |
| CGTGGGAATGGTTTAATGGT+AGG | - | chr7_4:57744938-57744957 | None:intergenic | 45.0% | |
| GCTAATCAAGAGCTCTTCGT+GGG | - | chr7_4:57744955-57744974 | None:intergenic | 45.0% | |
| AGCTAATCAAGAGCTCTTCG+TGG | - | chr7_4:57744956-57744975 | None:intergenic | 45.0% | |
| ! | CTATGTCCTTTTGCTACGGA+AGG | + | chr7_4:57745649-57745668 | Msa1165760:intron | 45.0% |
| AGAAAATGTGACGACAGGAG+AGG | - | chr7_4:57745735-57745754 | None:intergenic | 45.0% | |
| GTACTACAGAATGTGGAGTG+CGG | + | chr7_4:57745946-57745965 | Msa1165760:intron | 45.0% | |
| GAAGGACATGGACAATCTGA+AGG | + | chr7_4:57746008-57746027 | Msa1165760:CDS | 45.0% | |
| GTTCTTGTATGGAGAGTCCA+TGG | + | chr7_4:57746217-57746236 | Msa1165760:CDS | 45.0% | |
| !! | AAGGACCCTTCTTTTTGGGA+TGG | + | chr7_4:57746269-57746288 | Msa1165760:CDS | 45.0% |
| GTGGGAACTATCTTCCACTT+TGG | - | chr7_4:57746558-57746577 | None:intergenic | 45.0% | |
| GTGGAAGATAGTTCCCACAA+AGG | + | chr7_4:57746560-57746579 | Msa1165760:CDS | 45.0% | |
| AAACCTCACCCTTTCTCGTT+TGG | - | chr7_4:57746616-57746635 | None:intergenic | 45.0% | |
| GCAACCATTGTCAAAGGAAG+TGG | - | chr7_4:57746744-57746763 | None:intergenic | 45.0% | |
| ! | TTTTTAACCTGGGCTTGTCC+TGG | - | chr7_4:57746792-57746811 | None:intergenic | 45.0% |
| GGTGTCTTCAAGATTCATGC+TGG | - | chr7_4:57746836-57746855 | None:intergenic | 45.0% | |
| ! | CTTTGGGTGGAATTTTGAGC+AGG | + | chr7_4:57747550-57747569 | Msa1165760:intron | 45.0% |
| GTTAAACCATGCCACATTCC+AGG | - | chr7_4:57747689-57747708 | None:intergenic | 45.0% | |
| !! | AAATTATAATAAATAAAGAA+GGG | - | chr7_4:57743195-57743214 | None:intergenic | 5.0% |
| !! | TAAATTATAATAAATAAAGA+AGG | - | chr7_4:57743196-57743215 | None:intergenic | 5.0% |
| !!! | TTTATTTTTTATTTTTTTGT+AGG | + | chr7_4:57744611-57744630 | Msa1165760:intron | 5.0% |
| !! | AATAAAAATATAACAATAAA+TGG | + | chr7_4:57745439-57745458 | Msa1165760:intron | 5.0% |
| !!! | GTTAATTTTTTTTTTTTTTT+GGG | + | chr7_4:57745770-57745789 | Msa1165760:intron | 5.0% |
| ! | ACATGCATCAGGAGTTCTGG+AGG | + | chr7_4:57742413-57742432 | Msa1165760:intron | 50.0% |
| GTGAAAAGTTGCACTCCCCT+TGG | - | chr7_4:57742442-57742461 | None:intergenic | 50.0% | |
| AACCAATGTCCCTAGGGCAT+TGG | + | chr7_4:57742559-57742578 | Msa1165760:intron | 50.0% | |
| AACCAATGCCCTAGGGACAT+TGG | - | chr7_4:57742564-57742583 | None:intergenic | 50.0% | |
| !! | TGTCCCTAGGGCATTGGTTA+AGG | + | chr7_4:57742565-57742584 | Msa1165760:intron | 50.0% |
| GTCATGTTAACCAGTGCACG+GGG | - | chr7_4:57742700-57742719 | None:intergenic | 50.0% | |
| GGTCATGTTAACCAGTGCAC+GGG | - | chr7_4:57742701-57742720 | None:intergenic | 50.0% | |
| GGGTCATGTTAACCAGTGCA+CGG | - | chr7_4:57742702-57742721 | None:intergenic | 50.0% | |
| GAGTGCAGTCGTTTCATGAG+AGG | + | chr7_4:57742813-57742832 | Msa1165760:CDS | 50.0% | |
| GTAACGGTTGAACCTCCGAT+TGG | + | chr7_4:57744315-57744334 | Msa1165760:intron | 50.0% | |
| CGAAGCCACCCATCAGAAAA+TGG | + | chr7_4:57744891-57744910 | Msa1165760:intron | 50.0% | |
| TCAAGAGCTCTTCGTGGGAA+TGG | - | chr7_4:57744950-57744969 | None:intergenic | 50.0% | |
| CTGTTCCCTTCCGTAGCAAA+AGG | - | chr7_4:57745658-57745677 | None:intergenic | 50.0% | |
| ACGACAGGAGAGGATCTACA+TGG | - | chr7_4:57745725-57745744 | None:intergenic | 50.0% | |
| TTGTATGGAGAGTCCATGGG+TGG | + | chr7_4:57746221-57746240 | Msa1165760:CDS | 50.0% | |
| TAGACTAACTGCTCCACCCA+TGG | - | chr7_4:57746237-57746256 | None:intergenic | 50.0% | |
| CAGCGCCATCCCAAAAAGAA+GGG | - | chr7_4:57746277-57746296 | None:intergenic | 50.0% | |
| ACAGCGCCATCCCAAAAAGA+AGG | - | chr7_4:57746278-57746297 | None:intergenic | 50.0% | |
| TCGTTTGGCCGGATCTTTGA+AGG | - | chr7_4:57746601-57746620 | None:intergenic | 50.0% | |
| AAGATCCGGCCAAACGAGAA+AGG | + | chr7_4:57746604-57746623 | Msa1165760:CDS | 50.0% | |
| AGATCCGGCCAAACGAGAAA+GGG | + | chr7_4:57746605-57746624 | Msa1165760:CDS | 50.0% | |
| TGATATACCAGGACAAGCCC+AGG | + | chr7_4:57746782-57746801 | Msa1165760:CDS | 50.0% | |
| TGACAGACCCAGAAGTAAGC+AGG | + | chr7_4:57747615-57747634 | Msa1165760:CDS | 50.0% | |
| GACAGACCCAGAAGTAAGCA+GGG | + | chr7_4:57747616-57747635 | Msa1165760:CDS | 50.0% | |
| TTGTACCCTGGAATGTGGCA+TGG | + | chr7_4:57747680-57747699 | Msa1165760:CDS | 50.0% | |
| !! | AGGAGTTCTGGAGGAACCCA+AGG | + | chr7_4:57742422-57742441 | Msa1165760:intron | 55.0% |
| !! | GGAGTTCTGGAGGAACCCAA+GGG | + | chr7_4:57742423-57742442 | Msa1165760:intron | 55.0% |
| !! | GAGTTCTGGAGGAACCCAAG+GGG | + | chr7_4:57742424-57742443 | Msa1165760:CDS | 55.0% |
| ! | AGTGCACGGGGCACTAGTTA+AGG | - | chr7_4:57742688-57742707 | None:intergenic | 55.0% |
| TTAACTAGTGCCCCGTGCAC+TGG | + | chr7_4:57742687-57742706 | Msa1165760:intron | 55.0% | |
| CTCACCCTTTCTCGTTTGGC+CGG | - | chr7_4:57746612-57746631 | None:intergenic | 55.0% | |
| CCTTACACATGGGCGCGACA+AGG | - | chr7_4:57746301-57746320 | None:intergenic | 60.0% | |
| CCTTGTCGCGCCCATGTGTA+AGG | + | chr7_4:57746298-57746317 | Msa1165760:CDS | 60.0% | |
| CGGCCAAACGAGAAAGGGTG+AGG | + | chr7_4:57746610-57746629 | Msa1165760:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 57742029 | 57748032 | 57742029 | ID=Msa1165760;Name=Msa1165760 |
| chr7_4 | mRNA | 57742029 | 57748032 | 57742029 | ID=Msa1165760-mRNA-1;Parent=Msa1165760;Name=Msa1165760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=107|1|1|1|0.57|0.5|8|86|346 |
| chr7_4 | exon | 57742029 | 57742162 | 57742029 | ID=Msa1165760-mRNA-1:exon:17503;Parent=Msa1165760-mRNA-1 |
| chr7_4 | exon | 57742424 | 57742514 | 57742424 | ID=Msa1165760-mRNA-1:exon:17504;Parent=Msa1165760-mRNA-1 |
| chr7_4 | exon | 57742802 | 57742834 | 57742802 | ID=Msa1165760-mRNA-1:exon:17505;Parent=Msa1165760-mRNA-1 |
| chr7_4 | exon | 57745955 | 57746101 | 57745955 | ID=Msa1165760-mRNA-1:exon:17506;Parent=Msa1165760-mRNA-1 |
| chr7_4 | exon | 57746189 | 57746319 | 57746189 | ID=Msa1165760-mRNA-1:exon:17507;Parent=Msa1165760-mRNA-1 |
| chr7_4 | exon | 57746489 | 57746626 | 57746489 | ID=Msa1165760-mRNA-1:exon:17508;Parent=Msa1165760-mRNA-1 |
| chr7_4 | exon | 57746766 | 57746864 | 57746766 | ID=Msa1165760-mRNA-1:exon:17509;Parent=Msa1165760-mRNA-1 |
| chr7_4 | exon | 57747572 | 57748032 | 57747572 | ID=Msa1165760-mRNA-1:exon:17510;Parent=Msa1165760-mRNA-1 |
| chr7_4 | five_prime_UTR | 57742029 | 57742135 | 57742029 | ID=Msa1165760-mRNA-1:five_prime_utr;Parent=Msa1165760-mRNA-1 |
| chr7_4 | CDS | 57742136 | 57742162 | 57742136 | ID=Msa1165760-mRNA-1:cds;Parent=Msa1165760-mRNA-1 |
| chr7_4 | CDS | 57742424 | 57742514 | 57742424 | ID=Msa1165760-mRNA-1:cds;Parent=Msa1165760-mRNA-1 |
| chr7_4 | CDS | 57742802 | 57742834 | 57742802 | ID=Msa1165760-mRNA-1:cds;Parent=Msa1165760-mRNA-1 |
| chr7_4 | CDS | 57745955 | 57746101 | 57745955 | ID=Msa1165760-mRNA-1:cds;Parent=Msa1165760-mRNA-1 |
| chr7_4 | CDS | 57746189 | 57746319 | 57746189 | ID=Msa1165760-mRNA-1:cds;Parent=Msa1165760-mRNA-1 |
| chr7_4 | CDS | 57746489 | 57746626 | 57746489 | ID=Msa1165760-mRNA-1:cds;Parent=Msa1165760-mRNA-1 |
| chr7_4 | CDS | 57746766 | 57746864 | 57746766 | ID=Msa1165760-mRNA-1:cds;Parent=Msa1165760-mRNA-1 |
| chr7_4 | CDS | 57747572 | 57747946 | 57747572 | ID=Msa1165760-mRNA-1:cds;Parent=Msa1165760-mRNA-1 |
| chr7_4 | three_prime_UTR | 57747947 | 57748032 | 57747947 | ID=Msa1165760-mRNA-1:three_prime_utr;Parent=Msa1165760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
