AlfalfaGEDB | Msa1081970

M. sativa cultivar zhongmu-4 / Msa1081970

KEGG: K01054|K11649
GO: -
PFAM: PF12146.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081970	XP_003625919.2	96.532	346	7	1	1	346	1	341	0.0	693

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081970	sp\|Q9C942\|CSE_ARATH	38.516	283	171	3	9	289	41	322	4.06e-64	209

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081970	G7KRW6	96.532	346	7	1	1	346	1	341	0.0	693

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013270	Msa1081970	0.808676	2.755472e-50	-8.615850e-47
Msa0044160	Msa1081970	0.848259	6.870180e-60	-8.615850e-47
Msa0045810	Msa1081970	0.820474	6.731070e-53	-8.615850e-47
Msa0062190	Msa1081970	0.815063	1.119815e-51	-8.615850e-47
Msa0106540	Msa1081970	0.807394	5.164420e-50	-8.615850e-47
Msa0124910	Msa1081970	0.810169	1.317127e-50	-8.615850e-47
Msa0127770	Msa1081970	0.826369	2.817058e-54	-8.615850e-47
Msa0139500	Msa1081970	0.818853	1.577784e-52	-8.615850e-47
Msa0183710	Msa1081970	0.836006	1.204947e-56	-8.615850e-47
Msa0216340	Msa1081970	0.801454	8.934381e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081970	MtrunA17_Chr7g0269371	96.532	346	7	1	1	346	1	341	0.0	693
Msa1081970	MtrunA17_Chr1g0195501	71.383	311	87	2	1	309	1	311	7.56e-169	473
Msa1081970	MtrunA17_Chr1g0212901	51.903	289	138	1	2	289	4	292	1.54e-113	332
Msa1081970	MtrunA17_Chr6g0457581	48.264	288	148	1	5	291	51	338	8.68e-98	293
Msa1081970	MtrunA17_Chr6g0460121	49.104	279	141	1	14	291	23	301	4.20e-97	290
Msa1081970	MtrunA17_Chr7g0215451	45.455	286	155	1	5	289	52	337	7.10e-92	278
Msa1081970	MtrunA17_Chr1g0209741	42.756	283	160	1	8	288	93	375	4.60e-87	267
Msa1081970	MtrunA17_Chr5g0423541	43.816	283	157	1	8	288	107	389	9.21e-85	261
Msa1081970	MtrunA17_Chr4g0047891	45.520	279	150	1	12	288	43	321	6.50e-81	249
Msa1081970	MtrunA17_Chr1g0199771	38.047	297	178	5	7	299	30	324	1.42e-63	205

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081970	AT3G62860.1	67.723	347	109	2	1	345	2	347	0.0	510
Msa1081970	AT2G47630.1	66.476	349	107	3	4	345	5	350	4.45e-174	487
Msa1081970	AT3G62860.2	68.197	305	94	2	43	345	1	304	5.53e-159	447
Msa1081970	AT2G47630.2	65.909	308	97	2	43	345	1	305	2.10e-150	426
Msa1081970	AT2G47630.3	65.347	303	97	2	48	345	26	325	2.56e-146	416
Msa1081970	AT2G39420.1	57.877	292	122	1	5	295	8	299	1.88e-123	358
Msa1081970	AT2G39410.2	55.517	290	128	1	4	292	7	296	4.40e-119	347
Msa1081970	AT3G55180.1	56.597	288	123	1	7	292	4	291	5.92e-118	343
Msa1081970	AT2G39400.1	55.017	289	129	1	7	294	4	292	7.03e-116	338
Msa1081970	AT3G55190.1	46.417	321	164	3	1	319	4	318	4.95e-104	308

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Find 78 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCACCCTTTCTCGTT+TGG	0.334146	7_2:+81899046	None:intergenic
AAATTGATGACATCCTTTGT+GGG	0.543046	7_2:+81899086	None:intergenic
AAGACAATTAAATTGTACCC+TGG	0.629319	7_2:-81897993	Msa1081970:CDS
AAGAGTATAAGGGAAAAGCT+AGG	0.585965	7_2:-81899464	Msa1081970:CDS
AAGATCCGGCCAAACGAGAA+AGG	0.479104	7_2:-81899055	Msa1081970:CDS
AATTGGATGTGTAGAATCAT+AGG	0.453394	7_2:+81897872	None:intergenic
ACAACGTGTACCTTACACAT+GGG	0.621927	7_2:+81899351	None:intergenic
ACATAATGGCAACCATTTAC+AGG	0.354248	7_2:+81902084	None:intergenic
ACATCATGAACCTACATTCA+TGG	0.434009	7_2:+81897681	None:intergenic
ACATGCATCAGGAGTTCTGG+AGG	0.672710	7_2:-81902132	Msa1081970:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAATTAAGAGCTAGACCA+AGG	-	chr7_2:81897652-81897671	Msa1081970:three_prime_UTR	30.0%
AAAATTAGCGTGTAAGAGAA+AGG	+	chr7_2:81897794-81897813	None:intergenic	30.0%
TATTATGTTTATGTGTTCCG+AGG	-	chr7_2:81897839-81897858	Msa1081970:CDS	30.0%
TTATATACGTAACATGCATC+AGG	-	chr7_2:81898024-81898043	Msa1081970:CDS	30.0%
AGACAGTGAATTAATTACCA+TGG	+	chr7_2:81898135-81898154	None:intergenic	30.0%
TAAATATCTGTTGCAGGTTA+TGG	-	chr7_2:81898224-81898243	Msa1081970:intron	30.0%
AATATAACCAAAAAAAGGGG+GGG	+	chr7_2:81898334-81898353	None:intergenic	30.0%
AATGAGCACTAATTTGGTAA+CGG	-	chr7_2:81898815-81898834	Msa1081970:intron	30.0%
AATGGATGTCTACCTATATT+TGG	-	chr7_2:81898927-81898946	Msa1081970:intron	30.0%
GCTGAACTAAAACCAAATAT+AGG	+	chr7_2:81898942-81898961	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	81897651	81902538	81897651	ID=Msa1081970;Name=Msa1081970
chr7_2	mRNA	81897651	81902538	81897651	ID=Msa1081970-mRNA-1;Parent=Msa1081970;Name=Msa1081970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=107\|1\|1\|1\|0.85\|0.87\|8\|86\|346
chr7_2	exon	81897651	81898111	81897651	ID=Msa1081970-mRNA-1:exon:21109;Parent=Msa1081970-mRNA-1
chr7_2	exon	81898817	81898915	81898817	ID=Msa1081970-mRNA-1:exon:21108;Parent=Msa1081970-mRNA-1
chr7_2	exon	81899055	81899192	81899055	ID=Msa1081970-mRNA-1:exon:21107;Parent=Msa1081970-mRNA-1
chr7_2	exon	81899362	81899492	81899362	ID=Msa1081970-mRNA-1:exon:21106;Parent=Msa1081970-mRNA-1
chr7_2	exon	81899580	81899726	81899580	ID=Msa1081970-mRNA-1:exon:21105;Parent=Msa1081970-mRNA-1
chr7_2	exon	81901917	81901949	81901917	ID=Msa1081970-mRNA-1:exon:21104;Parent=Msa1081970-mRNA-1
chr7_2	exon	81902053	81902143	81902053	ID=Msa1081970-mRNA-1:exon:21103;Parent=Msa1081970-mRNA-1
chr7_2	exon	81902405	81902538	81902405	ID=Msa1081970-mRNA-1:exon:21102;Parent=Msa1081970-mRNA-1
chr7_2	five_prime_UTR	81902432	81902538	81902432	ID=Msa1081970-mRNA-1:five_prime_utr;Parent=Msa1081970-mRNA-1
chr7_2	CDS	81902405	81902431	81902405	ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1
chr7_2	CDS	81902053	81902143	81902053	ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1
chr7_2	CDS	81901917	81901949	81901917	ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1
chr7_2	CDS	81899580	81899726	81899580	ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1
chr7_2	CDS	81899362	81899492	81899362	ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1
chr7_2	CDS	81899055	81899192	81899055	ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1
chr7_2	CDS	81898817	81898915	81898817	ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1
chr7_2	CDS	81897737	81898111	81897737	ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1
chr7_2	three_prime_UTR	81897651	81897736	81897651	ID=Msa1081970-mRNA-1:three_prime_utr;Parent=Msa1081970-mRNA-1

Gene Sequence

>Msa1081970

ATGGATTTAGAGTTTCAATATAAAGAAGAGTTCTGGAGGAACCCAAGGGGAGTGCAACTTTTCACCTGTAAATGGTTGCCATTATGTTCTCCAAAGGCTCTGGTTTTTCTTTGCCATGGTTATGGCATGGAGTGCAGTCGTTTCATGAGAGAATGTGGAGTGCGGCTAGCATGTGCCAAATATGCTGTGTATGGTGTAGATTATGAAGGACATGGACAATCTGAAGGTGTTCGTTGTTACATTAAGAAGTTCAACAACATTGTTAATGACTGTTATGACTTTTTCAAGTCAGTTAGTGTTCTCCAAGAGTATAAGGGAAAAGCTAGGTTCTTGTATGGAGAGTCCATGGGTGGAGCAGTTAGTCTACTTTTGCATCAAAAGGACCCTTCTTTTTGGGATGGCGCTGTCCTTGTCGCACCCATGTGTAAGATATCAGAGAAGATGAAGCCACACCAAGTTGTCATCAACATATTGACTAAAGTTGAAGATATCATACCAAAGTGGAAGATAGTTCCCACAAAGGATGTCATCAATTTCGCCTTCAAAGATCCGGCCAAACGAGAAAGGATAAGGAAAAACAAGTTGATATACCAGGACAAGCCCAGGTTAAAAACAGCCCTAGAAATGTTAAGAACCAGCATGAATCTTGAAGACACCTTATACAAGGTAACCTTTCCATTTTTTGTATTGCATGGAGAAACAGATACAGTGACAGACCCAGAAGTAAGCAGGGCATTATATGAGAGAGCAAGTAGTAAAGATAAGACAATTAAATTGTACCCTGGAATGTGGCATGGTTTAACATCTGGTGAGCCAGATGACAACATTGAAAAAGTTTTTGAAGACATCATAACATGGCTTGACAAGCACGCCAACAATGCTGCCTATGATTCTACACATCCAATTGAGACTTGTAACCATGACAATGAGACATTGACACCAGTTGTATCATCAGCAAAGACTATGAAACAATCTCATAGGCGAAAAAGTTATCTTTGTGGCTTGAAAGGAAGTCGTTTGTTACACCACTCAGCAAATTAG

Protein sequence

>Msa1081970

MDLEFQYKEEFWRNPRGVQLFTCKWLPLCSPKALVFLCHGYGMECSRFMRECGVRLACAKYAVYGVDYEGHGQSEGVRCYIKKFNNIVNDCYDFFKSVSVLQEYKGKARFLYGESMGGAVSLLLHQKDPSFWDGAVLVAPMCKISEKMKPHQVVINILTKVEDIIPKWKIVPTKDVINFAFKDPAKRERIRKNKLIYQDKPRLKTALEMLRTSMNLEDTLYKVTFPFFVLHGETDTVTDPEVSRALYERASSKDKTIKLYPGMWHGLTSGEPDDNIEKVFEDIITWLDKHANNAAYDSTHPIETCNHDNETLTPVVSSAKTMKQSHRRKSYLCGLKGSRLLHHSAN*