Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081970 | XP_003625919.2 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081970 | sp|Q9C942|CSE_ARATH | 38.516 | 283 | 171 | 3 | 9 | 289 | 41 | 322 | 4.06e-64 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081970 | G7KRW6 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa1081970 | 0.808676 | 2.755472e-50 | -8.615850e-47 |
| Msa0044160 | Msa1081970 | 0.848259 | 6.870180e-60 | -8.615850e-47 |
| Msa0045810 | Msa1081970 | 0.820474 | 6.731070e-53 | -8.615850e-47 |
| Msa0062190 | Msa1081970 | 0.815063 | 1.119815e-51 | -8.615850e-47 |
| Msa0106540 | Msa1081970 | 0.807394 | 5.164420e-50 | -8.615850e-47 |
| Msa0618700 | Msa1081970 | 0.802674 | 5.015190e-49 | -8.615850e-47 |
| Msa0682110 | Msa1081970 | 0.803919 | 2.769505e-49 | -8.615850e-47 |
| Msa0682160 | Msa1081970 | 0.806829 | 6.802748e-50 | -8.615850e-47 |
| Msa0712880 | Msa1081970 | 0.815058 | 1.122879e-51 | -8.615850e-47 |
| Msa0722890 | Msa1081970 | 0.804886 | 1.741490e-49 | -8.615850e-47 |
| Msa0723090 | Msa1081970 | 0.828656 | 7.961458e-55 | -8.615850e-47 |
| Msa0745140 | Msa1081970 | 0.822036 | 2.935633e-53 | -8.615850e-47 |
| Msa0776640 | Msa1081970 | 0.822995 | 1.757952e-53 | -8.615850e-47 |
| Msa0825920 | Msa1081970 | 0.819794 | 9.631642e-53 | -8.615850e-47 |
| Msa0124910 | Msa1081970 | 0.810169 | 1.317127e-50 | -8.615850e-47 |
| Msa0127770 | Msa1081970 | 0.826369 | 2.817058e-54 | -8.615850e-47 |
| Msa0139500 | Msa1081970 | 0.818853 | 1.577784e-52 | -8.615850e-47 |
| Msa0183710 | Msa1081970 | 0.836006 | 1.204947e-56 | -8.615850e-47 |
| Msa0216340 | Msa1081970 | 0.801454 | 8.934381e-49 | -8.615850e-47 |
| Msa0235290 | Msa1081970 | 0.808453 | 3.074448e-50 | -8.615850e-47 |
| Msa0387930 | Msa1081970 | 0.801544 | 8.563209e-49 | -8.615850e-47 |
| Msa0437480 | Msa1081970 | 0.820160 | 7.941530e-53 | -8.615850e-47 |
| Msa0437520 | Msa1081970 | 0.846122 | 2.648390e-59 | -8.615850e-47 |
| Msa0440350 | Msa1081970 | 0.817853 | 2.657747e-52 | -8.615850e-47 |
| Msa1013190 | Msa1081970 | 0.800456 | 1.429300e-48 | -8.615850e-47 |
| Msa1022420 | Msa1081970 | 0.813158 | 2.948835e-51 | -8.615850e-47 |
| Msa1029820 | Msa1081970 | 0.806728 | 7.144361e-50 | -8.615850e-47 |
| Msa1044250 | Msa1081970 | 0.851517 | 8.428601e-61 | -8.615850e-47 |
| Msa1068940 | Msa1081970 | 0.803724 | 3.041098e-49 | -8.615850e-47 |
| Msa1081970 | Msa1082410 | 0.812846 | 3.451453e-51 | -8.615850e-47 |
| Msa1081970 | Msa1088320 | 0.803882 | 2.819633e-49 | -8.615850e-47 |
| Msa1081970 | Msa1106590 | 0.837691 | 4.476373e-57 | -8.615850e-47 |
| Msa1081970 | Msa1149910 | 0.806225 | 9.120814e-50 | -8.615850e-47 |
| Msa1081970 | Msa1165460 | 0.803069 | 4.156389e-49 | -8.615850e-47 |
| Msa1081970 | Msa1165760 | 0.946884 | 1.963390e-105 | -8.615850e-47 |
| Msa1081970 | Msa1240490 | 0.800154 | 1.646486e-48 | -8.615850e-47 |
| Msa1081970 | Msa1262590 | 0.825723 | 4.012463e-54 | -8.615850e-47 |
| Msa1081970 | Msa1366610 | 0.959612 | 1.238133e-117 | -8.615850e-47 |
| Msa1081970 | Msa1368390 | 0.809905 | 1.502022e-50 | -8.615850e-47 |
| Msa1081970 | Msa1405830 | 0.806552 | 7.784564e-50 | -8.615850e-47 |
| Msa1081970 | Msa1407810 | 0.820041 | 8.458193e-53 | -8.615850e-47 |
| Msa1081970 | Msa1407840 | 0.809385 | 1.942038e-50 | -8.615850e-47 |
| Msa1081970 | Msa1413130 | 0.800265 | 1.563255e-48 | -8.615850e-47 |
| Msa1081970 | Msa1433360 | 0.843959 | 1.016465e-58 | -8.615850e-47 |
| Msa1081970 | Msa1437780 | 0.818722 | 1.690106e-52 | -8.615850e-47 |
| Msa1081970 | Msa1437810 | 0.807727 | 4.389732e-50 | -8.615850e-47 |
| Msa1081970 | Msa1447100 | 0.833307 | 5.750106e-56 | -8.615850e-47 |
| Msa1081970 | Msa1449900 | 0.833789 | 4.357135e-56 | -8.615850e-47 |
| Msa0284800 | Msa1081970 | 0.803604 | 3.220283e-49 | -8.615850e-47 |
| Msa0313900 | Msa1081970 | 0.832875 | 7.362678e-56 | -8.615850e-47 |
| Msa0318490 | Msa1081970 | 0.816070 | 6.683656e-52 | -8.615850e-47 |
| Msa0330520 | Msa1081970 | 0.806685 | 7.293823e-50 | -8.615850e-47 |
| Msa0334320 | Msa1081970 | 0.800942 | 1.137495e-48 | -8.615850e-47 |
| Msa0354840 | Msa1081970 | 0.822458 | 2.343175e-53 | -8.615850e-47 |
| Msa0565700 | Msa1081970 | 0.801118 | 1.047086e-48 | -8.615850e-47 |
| Msa0567330 | Msa1081970 | 0.826417 | 2.743976e-54 | -8.615850e-47 |
| Msa0567570 | Msa1081970 | 0.800991 | 1.111276e-48 | -8.615850e-47 |
| Msa0574900 | Msa1081970 | 0.803608 | 3.214459e-49 | -8.615850e-47 |
| Msa0576320 | Msa1081970 | 0.810334 | 1.213699e-50 | -8.615850e-47 |
| Msa0581060 | Msa1081970 | 0.963454 | 4.182869e-122 | -8.615850e-47 |
| Msa0844360 | Msa1081970 | 0.800996 | 1.108966e-48 | -8.615850e-47 |
| Msa0865420 | Msa1081970 | 0.833123 | 6.388137e-56 | -8.615850e-47 |
| Msa0880910 | Msa1081970 | 0.808279 | 3.348941e-50 | -8.615850e-47 |
| Msa0967780 | Msa1081970 | 0.819174 | 1.333603e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081970 | MtrunA17_Chr7g0269371 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Msa1081970 | MtrunA17_Chr1g0195501 | 71.383 | 311 | 87 | 2 | 1 | 309 | 1 | 311 | 7.56e-169 | 473 |
| Msa1081970 | MtrunA17_Chr1g0212901 | 51.903 | 289 | 138 | 1 | 2 | 289 | 4 | 292 | 1.54e-113 | 332 |
| Msa1081970 | MtrunA17_Chr6g0457581 | 48.264 | 288 | 148 | 1 | 5 | 291 | 51 | 338 | 8.68e-98 | 293 |
| Msa1081970 | MtrunA17_Chr6g0460121 | 49.104 | 279 | 141 | 1 | 14 | 291 | 23 | 301 | 4.20e-97 | 290 |
| Msa1081970 | MtrunA17_Chr7g0215451 | 45.455 | 286 | 155 | 1 | 5 | 289 | 52 | 337 | 7.10e-92 | 278 |
| Msa1081970 | MtrunA17_Chr1g0209741 | 42.756 | 283 | 160 | 1 | 8 | 288 | 93 | 375 | 4.60e-87 | 267 |
| Msa1081970 | MtrunA17_Chr5g0423541 | 43.816 | 283 | 157 | 1 | 8 | 288 | 107 | 389 | 9.21e-85 | 261 |
| Msa1081970 | MtrunA17_Chr4g0047891 | 45.520 | 279 | 150 | 1 | 12 | 288 | 43 | 321 | 6.50e-81 | 249 |
| Msa1081970 | MtrunA17_Chr1g0199771 | 38.047 | 297 | 178 | 5 | 7 | 299 | 30 | 324 | 1.42e-63 | 205 |
| Msa1081970 | MtrunA17_Chr4g0071671 | 37.143 | 280 | 173 | 3 | 12 | 289 | 35 | 313 | 8.04e-62 | 200 |
| Msa1081970 | MtrunA17_Chr6g0484431 | 42.857 | 224 | 125 | 3 | 9 | 229 | 58 | 281 | 2.48e-58 | 190 |
| Msa1081970 | MtrunA17_Chr6g0479331 | 34.155 | 284 | 173 | 9 | 10 | 288 | 114 | 388 | 8.93e-35 | 131 |
| Msa1081970 | MtrunA17_Chr3g0140391 | 30.576 | 278 | 179 | 8 | 16 | 289 | 103 | 370 | 3.74e-34 | 129 |
| Msa1081970 | MtrunA17_Chr6g0484421 | 50.000 | 64 | 32 | 0 | 230 | 293 | 1 | 64 | 7.77e-17 | 74.3 |
| Msa1081970 | MtrunA17_Chr1g0209761 | 50.000 | 66 | 33 | 0 | 223 | 288 | 12 | 77 | 1.20e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081970 | AT3G62860.1 | 67.723 | 347 | 109 | 2 | 1 | 345 | 2 | 347 | 0.0 | 510 |
| Msa1081970 | AT2G47630.1 | 66.476 | 349 | 107 | 3 | 4 | 345 | 5 | 350 | 4.45e-174 | 487 |
| Msa1081970 | AT3G62860.2 | 68.197 | 305 | 94 | 2 | 43 | 345 | 1 | 304 | 5.53e-159 | 447 |
| Msa1081970 | AT2G47630.2 | 65.909 | 308 | 97 | 2 | 43 | 345 | 1 | 305 | 2.10e-150 | 426 |
| Msa1081970 | AT2G47630.3 | 65.347 | 303 | 97 | 2 | 48 | 345 | 26 | 325 | 2.56e-146 | 416 |
| Msa1081970 | AT2G39420.1 | 57.877 | 292 | 122 | 1 | 5 | 295 | 8 | 299 | 1.88e-123 | 358 |
| Msa1081970 | AT2G39410.2 | 55.517 | 290 | 128 | 1 | 4 | 292 | 7 | 296 | 4.40e-119 | 347 |
| Msa1081970 | AT3G55180.1 | 56.597 | 288 | 123 | 1 | 7 | 292 | 4 | 291 | 5.92e-118 | 343 |
| Msa1081970 | AT2G39400.1 | 55.017 | 289 | 129 | 1 | 7 | 294 | 4 | 292 | 7.03e-116 | 338 |
| Msa1081970 | AT3G55190.1 | 46.417 | 321 | 164 | 3 | 1 | 319 | 4 | 318 | 4.95e-104 | 308 |
| Msa1081970 | AT5G16120.3 | 46.622 | 296 | 157 | 1 | 5 | 299 | 53 | 348 | 2.93e-94 | 285 |
| Msa1081970 | AT5G16120.1 | 46.622 | 296 | 157 | 1 | 5 | 299 | 53 | 348 | 2.93e-94 | 285 |
| Msa1081970 | AT5G16120.2 | 46.622 | 296 | 157 | 1 | 5 | 299 | 71 | 366 | 7.62e-94 | 284 |
| Msa1081970 | AT5G16120.4 | 46.622 | 296 | 157 | 1 | 5 | 299 | 85 | 380 | 9.15e-94 | 285 |
| Msa1081970 | AT1G11090.1 | 46.099 | 282 | 150 | 1 | 9 | 288 | 31 | 312 | 4.64e-87 | 265 |
| Msa1081970 | AT2G39400.2 | 53.881 | 219 | 100 | 1 | 6 | 223 | 3 | 221 | 7.95e-83 | 252 |
| Msa1081970 | AT1G77420.1 | 41.115 | 287 | 167 | 1 | 8 | 292 | 94 | 380 | 9.98e-78 | 243 |
| Msa1081970 | AT5G14980.1 | 38.768 | 276 | 166 | 3 | 14 | 287 | 38 | 312 | 1.39e-65 | 210 |
| Msa1081970 | AT1G52760.1 | 38.516 | 283 | 171 | 3 | 9 | 289 | 41 | 322 | 4.13e-65 | 209 |
| Msa1081970 | AT5G19290.1 | 34.471 | 293 | 188 | 3 | 6 | 295 | 30 | 321 | 6.98e-61 | 198 |
| Msa1081970 | AT1G73480.1 | 33.214 | 280 | 171 | 9 | 16 | 290 | 194 | 462 | 9.05e-39 | 143 |
| Msa1081970 | AT1G18360.1 | 33.333 | 279 | 173 | 7 | 16 | 290 | 112 | 381 | 3.43e-37 | 137 |
| Msa1081970 | AT5G11650.1 | 32.130 | 277 | 172 | 9 | 16 | 287 | 110 | 375 | 9.19e-35 | 131 |
| Msa1081970 | AT2G39410.1 | 55.682 | 88 | 38 | 1 | 4 | 90 | 7 | 94 | 8.73e-30 | 110 |
| Msa1081970 | AT5G11650.2 | 25.510 | 196 | 133 | 7 | 16 | 206 | 110 | 297 | 7.18e-14 | 71.6 |
Find 78 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATGCCCTGCTTACTTC+TGG | 0.212230 | 7_2:+81898038 | None:intergenic |
| TTCAGTTCTCCAAGAGTATA+AGG | 0.225869 | 7_2:-81899475 | Msa1081970:intron |
| TACACCATACACAGCATATT+TGG | 0.251718 | 7_2:+81899680 | None:intergenic |
| TGCTGGTTCTTAACATTTCT+AGG | 0.256347 | 7_2:+81898843 | None:intergenic |
| GATCGATTAACTGGTTGATA+TGG | 0.285048 | 7_2:-81902428 | Msa1081970:exon |
| CAGATCAATCACTTGTTCAT+AGG | 0.325445 | 7_2:-81902477 | Msa1081970:five_prime_UTR |
| AAACCTCACCCTTTCTCGTT+TGG | 0.334146 | 7_2:+81899046 | None:intergenic |
| AGTTGATCAGATCGATTAAC+TGG | 0.336765 | 7_2:-81902437 | Msa1081970:five_prime_UTR |
| TGCATAGTTAACCTTGTATA+AGG | 0.346053 | 7_2:+81898805 | None:intergenic |
| ACATAATGGCAACCATTTAC+AGG | 0.354248 | 7_2:+81902084 | None:intergenic |
| TCGTTTGGCCGGATCTTTGA+AGG | 0.358443 | 7_2:+81899061 | None:intergenic |
| GTAACATGCATCAGGAGTTC+TGG | 0.390797 | 7_2:-81902135 | Msa1081970:intron |
| GTTAAACCATGCCACATTCC+AGG | 0.412914 | 7_2:+81897975 | None:intergenic |
| TCAGTTCTCCAAGAGTATAA+GGG | 0.415803 | 7_2:-81899474 | Msa1081970:intron |
| ATAATGCCCTGCTTACTTCT+GGG | 0.425265 | 7_2:+81898039 | None:intergenic |
| TCATGGTTACAAGTCTCAAT+TGG | 0.427472 | 7_2:+81897855 | None:intergenic |
| ACATCATGAACCTACATTCA+TGG | 0.434009 | 7_2:+81897681 | None:intergenic |
| ATTATGTTCTCCAAAGGCTC+TGG | 0.439440 | 7_2:-81902068 | Msa1081970:CDS |
| AGACTATGAAACAATCTCAT+AGG | 0.443501 | 7_2:-81897797 | Msa1081970:CDS |
| GTTCTTGTATGGAGAGTCCA+TGG | 0.446963 | 7_2:-81899442 | Msa1081970:CDS |
| GAAATTGATGACATCCTTTG+TGG | 0.451223 | 7_2:+81899085 | None:intergenic |
| AATTGGATGTGTAGAATCAT+AGG | 0.453394 | 7_2:+81897872 | None:intergenic |
| GCTGGTTCTTAACATTTCTA+GGG | 0.456674 | 7_2:+81898844 | None:intergenic |
| CTCACCCTTTCTCGTTTGGC+CGG | 0.464749 | 7_2:+81899050 | None:intergenic |
| TGAAAAGTTGCACTCCCCTT+GGG | 0.467830 | 7_2:+81902107 | None:intergenic |
| CAATTTCGCCTTCAAAGATC+CGG | 0.473542 | 7_2:-81899069 | Msa1081970:CDS |
| GGAAAAGCTAGGTTCTTGTA+TGG | 0.474126 | 7_2:-81899453 | Msa1081970:CDS |
| GTGAAAAGTTGCACTCCCCT+TGG | 0.475498 | 7_2:+81902106 | None:intergenic |
| AGAGCCTTTGGAGAACATAA+TGG | 0.478092 | 7_2:+81902070 | None:intergenic |
| AAGATCCGGCCAAACGAGAA+AGG | 0.479104 | 7_2:-81899055 | Msa1081970:CDS |
| AGTTATCTTTGTGGCTTGAA+AGG | 0.484287 | 7_2:-81897768 | Msa1081970:CDS |
| TGACAGACCCAGAAGTAAGC+AGG | 0.496194 | 7_2:-81898046 | Msa1081970:CDS |
| CCTTGTCGCACCCATGTGTA+AGG | 0.496565 | 7_2:-81899361 | Msa1081970:intron |
| GTCTTTGCTGATGATACAAC+TGG | 0.500765 | 7_2:+81897816 | None:intergenic |
| AGAATCATAGGCAGCATTGT+TGG | 0.502217 | 7_2:+81897884 | None:intergenic |
| GTGATTGATCTGCAAGTGAA+AGG | 0.507057 | 7_2:+81902488 | None:intergenic |
| GTGGGAACTATCTTCCACTT+TGG | 0.507430 | 7_2:+81899104 | None:intergenic |
| TGCAAGTGAAAGGGAAACCT+TGG | 0.511476 | 7_2:+81902498 | None:intergenic |
| ATGTGGCATGGTTTAACATC+TGG | 0.519462 | 7_2:-81897969 | Msa1081970:CDS |
| TGATATACCAGGACAAGCCC+AGG | 0.533416 | 7_2:-81898877 | Msa1081970:CDS |
| AGATCCGGCCAAACGAGAAA+GGG | 0.539898 | 7_2:-81899054 | Msa1081970:intron |
| AAATTGATGACATCCTTTGT+GGG | 0.543046 | 7_2:+81899086 | None:intergenic |
| TGATTGATCTGCAAGTGAAA+GGG | 0.548164 | 7_2:+81902489 | None:intergenic |
| ATCTGTTGCAGGTTATGGCA+TGG | 0.558684 | 7_2:-81901938 | Msa1081970:intron |
| GGTGTCTTCAAGATTCATGC+TGG | 0.560620 | 7_2:+81898826 | None:intergenic |
| TCTTGAAGACACCTTATACA+AGG | 0.565278 | 7_2:-81898816 | Msa1081970:intron |
| TTAAACCATGCCACATTCCA+GGG | 0.567753 | 7_2:+81897976 | None:intergenic |
| AGGAGTTCTGGAGGAACCCA+AGG | 0.572295 | 7_2:-81902123 | Msa1081970:CDS |
| TACAACGTGTACCTTACACA+TGG | 0.572631 | 7_2:+81899350 | None:intergenic |
| GACAGACCCAGAAGTAAGCA+GGG | 0.576720 | 7_2:-81898045 | Msa1081970:CDS |
| TGTGCCAAATATGCTGTGTA+TGG | 0.584688 | 7_2:-81899684 | Msa1081970:CDS |
| AAGAGTATAAGGGAAAAGCT+AGG | 0.585965 | 7_2:-81899464 | Msa1081970:CDS |
| TAGACTAACTGCTCCACCCA+TGG | 0.587925 | 7_2:+81899425 | None:intergenic |
| TTTAATTAAGAGCTAGACCA+AGG | 0.593093 | 7_2:-81902515 | Msa1081970:five_prime_UTR |
| TTTCATTCTAATTTGCTGAG+TGG | 0.595665 | 7_2:+81897730 | None:intergenic |
| GTTGCCATTATGTTCTCCAA+AGG | 0.597843 | 7_2:-81902074 | Msa1081970:CDS |
| TTCTTGTATGGAGAGTCCAT+GGG | 0.602502 | 7_2:-81899441 | Msa1081970:CDS |
| GAGTGCAGTCGTTTCATGAG+AGG | 0.608720 | 7_2:-81901916 | Msa1081970:intron |
| GAAGGACATGGACAATCTGA+AGG | 0.609980 | 7_2:-81899651 | Msa1081970:CDS |
| TTGTATGGAGAGTCCATGGG+TGG | 0.611978 | 7_2:-81899438 | Msa1081970:CDS |
| TTGAAGATATCATACCAAAG+TGG | 0.612746 | 7_2:-81899118 | Msa1081970:CDS |
| TTAAATTGTACCCTGGAATG+TGG | 0.615904 | 7_2:-81897986 | Msa1081970:CDS |
| AGAATGAAATAATTACACTC+TGG | 0.620611 | 7_2:-81897716 | Msa1081970:three_prime_UTR |
| ACAACGTGTACCTTACACAT+GGG | 0.621927 | 7_2:+81899351 | None:intergenic |
| TCAATATGTTGATGACAACT+TGG | 0.624135 | 7_2:+81899147 | None:intergenic |
| GTGTCAATGTCTCATTGTCA+TGG | 0.624411 | 7_2:+81897838 | None:intergenic |
| AAGACAATTAAATTGTACCC+TGG | 0.629319 | 7_2:-81897993 | Msa1081970:CDS |
| GTGTATGGTGTAGATTATGA+AGG | 0.634571 | 7_2:-81899669 | Msa1081970:CDS |
| CCTTACACATGGGTGCGACA+AGG | 0.636170 | 7_2:+81899361 | None:intergenic |
| TTGACTGTGACCATGAATGT+AGG | 0.636251 | 7_2:-81897691 | Msa1081970:three_prime_UTR |
| GGTGTAGATTATGAAGGACA+TGG | 0.638840 | 7_2:-81899663 | Msa1081970:CDS |
| TTGTACCCTGGAATGTGGCA+TGG | 0.642467 | 7_2:-81897981 | Msa1081970:CDS |
| GGAGTTCTGGAGGAACCCAA+GGG | 0.647003 | 7_2:-81902122 | Msa1081970:CDS |
| ACATGCATCAGGAGTTCTGG+AGG | 0.672710 | 7_2:-81902132 | Msa1081970:intron |
| GTGGAAGATAGTTCCCACAA+AGG | 0.681811 | 7_2:-81899099 | Msa1081970:CDS |
| ATGTTGATGACAACTTGGTG+TGG | 0.690265 | 7_2:+81899152 | None:intergenic |
| GTACTACAGAATGTGGAGTG+CGG | 0.724286 | 7_2:-81899713 | Msa1081970:intron |
| GAGTTCTGGAGGAACCCAAG+GGG | 0.724868 | 7_2:-81902121 | Msa1081970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTAAATTTTTTATGAAA+TGG | - | chr7_2:81897919-81897938 | Msa1081970:CDS | 10.0% |
| !! | GCTAATTAATATTAATATTA+TGG | - | chr7_2:81897992-81898011 | Msa1081970:CDS | 10.0% |
| !!! | TTTTAATTGATTTTACATTT+AGG | - | chr7_2:81899204-81899223 | Msa1081970:intron | 10.0% |
| !!! | TTTAATTGATTTTACATTTA+GGG | - | chr7_2:81899205-81899224 | Msa1081970:intron | 10.0% |
| !! | AATAAAAAAAATCTTAAATG+AGG | + | chr7_2:81899597-81899616 | None:intergenic | 10.0% |
| !!! | AAAAATAGTTTATCATTTTT+TGG | + | chr7_2:81899916-81899935 | None:intergenic | 10.0% |
| !! | AAAAAAAACATATAGAATTA+TGG | - | chr7_2:81899986-81900005 | Msa1081970:intron | 10.0% |
| !! | AAAAAAACATATAGAATTAT+GGG | - | chr7_2:81899987-81900006 | Msa1081970:intron | 10.0% |
| !!! | TTTTATTTAATCTATAATTG+AGG | - | chr7_2:81901176-81901195 | Msa1081970:intron | 10.0% |
| !! | TTCAAATATAACCAAAAAAA+GGG | + | chr7_2:81898338-81898357 | None:intergenic | 15.0% |
| !!! | AATCATGCATATTTTTTTTA+AGG | - | chr7_2:81898385-81898404 | Msa1081970:intron | 15.0% |
| !! | ATTAAAATTTAAACATGCTT+TGG | - | chr7_2:81898484-81898503 | Msa1081970:intron | 15.0% |
| !! | TTAAAATTTAAACATGCTTT+GGG | - | chr7_2:81898485-81898504 | Msa1081970:intron | 15.0% |
| !!! | GTACTAGTTTAATTTTATAA+TGG | - | chr7_2:81898909-81898928 | Msa1081970:intron | 15.0% |
| !! | AATATTTAATCAATACAGTT+TGG | - | chr7_2:81899744-81899763 | Msa1081970:intron | 15.0% |
| !!! | TTCATGGTTAATTTTTTTTT+TGG | - | chr7_2:81900277-81900296 | Msa1081970:intron | 15.0% |
| !!! | TCATGGTTAATTTTTTTTTT+GGG | - | chr7_2:81900278-81900297 | Msa1081970:intron | 15.0% |
| !! | ATATGGATTTATAATTAACT+TGG | + | chr7_2:81900912-81900931 | None:intergenic | 15.0% |
| !!! | TTTTCTAAACAAAAAGTATA+TGG | + | chr7_2:81900929-81900948 | None:intergenic | 15.0% |
| !! | TAAACAATTTAACGTTTATT+TGG | + | chr7_2:81901929-81901948 | None:intergenic | 15.0% |
| !!! | AAAATCAAACTATTTTCACT+GGG | + | chr7_2:81897883-81897902 | None:intergenic | 20.0% |
| !! | TCAAATATAACCAAAAAAAG+GGG | + | chr7_2:81898337-81898356 | None:intergenic | 20.0% |
| !! | CTTCAAATATAACCAAAAAA+AGG | + | chr7_2:81898339-81898358 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTATATTTGAAGT+CGG | - | chr7_2:81898340-81898359 | Msa1081970:intron | 20.0% |
| !! | TAAAATTTAAACATGCTTTG+GGG | - | chr7_2:81898486-81898505 | Msa1081970:intron | 20.0% |
| !!! | TTTTTCTTTCTTTTTTTGAG+AGG | + | chr7_2:81898679-81898698 | None:intergenic | 20.0% |
| !!! | TTATGCATTTTTTTTCCAAT+CGG | + | chr7_2:81898849-81898868 | None:intergenic | 20.0% |
| !! | AAAATTCGTCATCTAATAAA+TGG | + | chr7_2:81898988-81899007 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGAACAAGAAAAA+TGG | + | chr7_2:81899162-81899181 | None:intergenic | 20.0% |
| !!! | AGAGAGATATATTTACATTT+TGG | - | chr7_2:81899179-81899198 | Msa1081970:intron | 20.0% |
| !!! | CGAAATTTTTCTTTGAAATT+TGG | - | chr7_2:81899255-81899274 | Msa1081970:intron | 20.0% |
| !!! | AATTTTTCTTTGAAATTTGG+TGG | - | chr7_2:81899258-81899277 | Msa1081970:intron | 20.0% |
| !!! | TCATATAAATAAGAGTATTG+TGG | + | chr7_2:81899345-81899364 | None:intergenic | 20.0% |
| !!! | TTCTTTTTACAATTTGAAAG+TGG | - | chr7_2:81899383-81899402 | Msa1081970:CDS | 20.0% |
| !!! | AAAAAAAAAGTATGGTATGT+TGG | + | chr7_2:81899672-81899691 | None:intergenic | 20.0% |
| !!! | ACCATACTTTTTTTTTTGAA+AGG | - | chr7_2:81899676-81899695 | Msa1081970:CDS | 20.0% |
| !! | TCCTTTCAAAAAAAAAAGTA+TGG | + | chr7_2:81899680-81899699 | None:intergenic | 20.0% |
| !!! | TAATTTTAAGTATGGTATGT+TGG | + | chr7_2:81899703-81899722 | None:intergenic | 20.0% |
| !!! | TAGCATAGTAATTTTAAGTA+TGG | + | chr7_2:81899711-81899730 | None:intergenic | 20.0% |
| !! | GTTTGGAAAATAGAATAAAT+TGG | - | chr7_2:81899761-81899780 | Msa1081970:intron | 20.0% |
| !! | ATTGTTCTACAAATTTACTT+AGG | + | chr7_2:81899828-81899847 | None:intergenic | 20.0% |
| !! | CATTTCTTATGAAGTAATTA+AGG | - | chr7_2:81900137-81900156 | Msa1081970:intron | 20.0% |
| !!! | ATTTTCTCATGAAAAATTCA+TGG | - | chr7_2:81900261-81900280 | Msa1081970:intron | 20.0% |
| !!! | ATAAGACACATTTTTTTCTA+AGG | + | chr7_2:81900319-81900338 | None:intergenic | 20.0% |
| !! | AGTACTATAGATATATGTTT+AGG | - | chr7_2:81900398-81900417 | Msa1081970:intron | 20.0% |
| !! | GTACTATAGATATATGTTTA+GGG | - | chr7_2:81900399-81900418 | Msa1081970:intron | 20.0% |
| !! | AATGAATGATGAAACTATAA+TGG | + | chr7_2:81900661-81900680 | None:intergenic | 20.0% |
| !! | GTAAAAAATCTTTACATTAC+AGG | - | chr7_2:81900878-81900897 | Msa1081970:intron | 20.0% |
| !! | CTAAAGTAAACATGAAAATA+TGG | - | chr7_2:81900957-81900976 | Msa1081970:intron | 20.0% |
| !!! | ACTTATTTGAACTTTTTTTG+AGG | - | chr7_2:81901431-81901450 | Msa1081970:intron | 20.0% |
| !!! | CTTATTTGAACTTTTTTTGA+GGG | - | chr7_2:81901432-81901451 | Msa1081970:intron | 20.0% |
| !!! | ACTTATTTCTATAAATTCTC+CGG | - | chr7_2:81901545-81901564 | Msa1081970:intron | 20.0% |
| !!! | CAAATTGTTTTTCTTTTAAC+CGG | - | chr7_2:81901710-81901729 | Msa1081970:intron | 20.0% |
| !! | AAAATCAATCCTATTCAAAA+AGG | + | chr7_2:81901739-81901758 | None:intergenic | 20.0% |
| !!! | ATCACTTTTAGTTTTTGTTA+CGG | - | chr7_2:81901898-81901917 | Msa1081970:intron | 20.0% |
| !!! | GTGTTAATTTGAATATTTGT+TGG | + | chr7_2:81901990-81902009 | None:intergenic | 20.0% |
| !! | CATATCATACCTAATTTATT+TGG | - | chr7_2:81902031-81902050 | Msa1081970:intron | 20.0% |
| !! | CAAAATCAAACTATTTTCAC+TGG | + | chr7_2:81897884-81897903 | None:intergenic | 25.0% |
| !! | TGATTTTGTAACCTTATGAA+CGG | - | chr7_2:81897896-81897915 | Msa1081970:CDS | 25.0% |
| ! | AAATTTAAACTCCGTTCATA+AGG | + | chr7_2:81897910-81897929 | None:intergenic | 25.0% |
| !! | AATTTTCTCTCTATCTTAGA+AGG | - | chr7_2:81898179-81898198 | Msa1081970:intron | 25.0% |
| ! | TTTCATTAAATATCTGTTGC+AGG | - | chr7_2:81898218-81898237 | Msa1081970:intron | 25.0% |
| ! | TTGATTGATAAACAAGTTAC+TGG | + | chr7_2:81898291-81898310 | None:intergenic | 25.0% |
| ! | AAATATAACCAAAAAAAGGG+GGG | + | chr7_2:81898335-81898354 | None:intergenic | 25.0% |
| ! | CAAATATAACCAAAAAAAGG+GGG | + | chr7_2:81898336-81898355 | None:intergenic | 25.0% |
| !! | TATATTTGAAGTCGGTTTAA+AGG | - | chr7_2:81898348-81898367 | Msa1081970:intron | 25.0% |
| ! | AAGATAGACTTGAATCTTTA+TGG | - | chr7_2:81898703-81898722 | Msa1081970:intron | 25.0% |
| !! | CATTTGTATTCTTTTCTCAT+TGG | + | chr7_2:81898799-81898818 | None:intergenic | 25.0% |
| ! | AATACAAATGAGCACTAATT+TGG | - | chr7_2:81898809-81898828 | Msa1081970:intron | 25.0% |
| ! | AACAAAATTCATCACTTAGT+TGG | + | chr7_2:81899019-81899038 | None:intergenic | 25.0% |
| ! | TAACGACTACATATTTAGTT+GGG | + | chr7_2:81899502-81899521 | None:intergenic | 25.0% |
| ! | AAAACATATAGAATTATGGG+AGG | - | chr7_2:81899990-81900009 | Msa1081970:intron | 25.0% |
| ! | AAACATATAGAATTATGGGA+GGG | - | chr7_2:81899991-81900010 | Msa1081970:intron | 25.0% |
| ! | AACCCTGAAAAAACAAAATA+TGG | - | chr7_2:81900079-81900098 | Msa1081970:intron | 25.0% |
| !!! | TGCCATATTTTGTTTTTTCA+GGG | + | chr7_2:81900084-81900103 | None:intergenic | 25.0% |
| ! | TTCAGATATATTTACGAGAA+AGG | + | chr7_2:81901154-81901173 | None:intergenic | 25.0% |
| !!! | CTTATTTCTATAAATTCTCC+GGG | - | chr7_2:81901546-81901565 | Msa1081970:intron | 25.0% |
| !!! | GTGTATGTTTGTTTCTATTT+TGG | - | chr7_2:81901680-81901699 | Msa1081970:intron | 25.0% |
| !!! | TATGTTTGTTTCTATTTTGG+AGG | - | chr7_2:81901683-81901702 | Msa1081970:intron | 25.0% |
| ! | CGGTTAAAAGAAAAACAATT+TGG | + | chr7_2:81901712-81901731 | None:intergenic | 25.0% |
| !! | AAGTTAGAATCAATTTTGGA+AGG | + | chr7_2:81901762-81901781 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTAGAATCAATTT+TGG | + | chr7_2:81901766-81901785 | None:intergenic | 25.0% |
| ! | GGCTAAAAATCAAAATTTAG+AGG | + | chr7_2:81901808-81901827 | None:intergenic | 25.0% |
| ! | AATGTGAATCACTTTATGTT+TGG | + | chr7_2:81901874-81901893 | None:intergenic | 25.0% |
| !! | ACATAATCAAGTTACCTTTT+CGG | - | chr7_2:81901960-81901979 | Msa1081970:intron | 25.0% |
| ! | ACCTAATTTATTTGGTACTT+TGG | - | chr7_2:81902039-81902058 | Msa1081970:intron | 25.0% |
| ! | CCTAATTTATTTGGTACTTT+GGG | - | chr7_2:81902040-81902059 | Msa1081970:intron | 25.0% |
| ! | ATGCAATACAAAAAATGGAA+AGG | + | chr7_2:81902085-81902104 | None:intergenic | 25.0% |
| !!! | TTTCCATTTTTTGTATTGCA+TGG | - | chr7_2:81902084-81902103 | Msa1081970:CDS | 25.0% |
| !!! | TTTTTGAAGACATCATAACA+TGG | - | chr7_2:81902247-81902266 | Msa1081970:intron | 25.0% |
| ! | AGAATGAAATAATTACACTC+TGG | - | chr7_2:81902451-81902470 | Msa1081970:five_prime_UTR | 25.0% |
| TTTAATTAAGAGCTAGACCA+AGG | - | chr7_2:81897652-81897671 | Msa1081970:three_prime_UTR | 30.0% | |
| AAAATTAGCGTGTAAGAGAA+AGG | + | chr7_2:81897794-81897813 | None:intergenic | 30.0% | |
| TATTATGTTTATGTGTTCCG+AGG | - | chr7_2:81897839-81897858 | Msa1081970:CDS | 30.0% | |
| TTATATACGTAACATGCATC+AGG | - | chr7_2:81898024-81898043 | Msa1081970:CDS | 30.0% | |
| AGACAGTGAATTAATTACCA+TGG | + | chr7_2:81898135-81898154 | None:intergenic | 30.0% | |
| TAAATATCTGTTGCAGGTTA+TGG | - | chr7_2:81898224-81898243 | Msa1081970:intron | 30.0% | |
| AATATAACCAAAAAAAGGGG+GGG | + | chr7_2:81898334-81898353 | None:intergenic | 30.0% | |
| ! | TTACTTGTCAGTTTTCTAGA+AGG | - | chr7_2:81898760-81898779 | Msa1081970:intron | 30.0% |
| AATGAGCACTAATTTGGTAA+CGG | - | chr7_2:81898815-81898834 | Msa1081970:intron | 30.0% | |
| AATGGATGTCTACCTATATT+TGG | - | chr7_2:81898927-81898946 | Msa1081970:intron | 30.0% | |
| GCTGAACTAAAACCAAATAT+AGG | + | chr7_2:81898942-81898961 | None:intergenic | 30.0% | |
| GTAACGACTACATATTTAGT+TGG | + | chr7_2:81899503-81899522 | None:intergenic | 30.0% | |
| AACATATAGAATTATGGGAG+GGG | - | chr7_2:81899992-81900011 | Msa1081970:intron | 30.0% | |
| !!! | CTGCCATATTTTGTTTTTTC+AGG | + | chr7_2:81900085-81900104 | None:intergenic | 30.0% |
| GGTTTATCTCTAGCTAATTA+TGG | - | chr7_2:81900420-81900439 | Msa1081970:intron | 30.0% | |
| TACACTCAAAAGATTAGACA+AGG | + | chr7_2:81900627-81900646 | None:intergenic | 30.0% | |
| !! | TAGTCTACTTTTGCATCAAA+AGG | - | chr7_2:81900758-81900777 | Msa1081970:intron | 30.0% |
| !! | TCAATATGTTGATGACAACT+TGG | + | chr7_2:81901023-81901042 | None:intergenic | 30.0% |
| TTGAAGATATCATACCAAAG+TGG | - | chr7_2:81901049-81901068 | Msa1081970:intron | 30.0% | |
| ! | AAATTGATGACATCCTTTGT+GGG | + | chr7_2:81901084-81901103 | None:intergenic | 30.0% |
| !! | GAAAAACAAGTTGATATACC+AGG | - | chr7_2:81901279-81901298 | Msa1081970:intron | 30.0% |
| TGCATAGTTAACCTTGTATA+AGG | + | chr7_2:81901365-81901384 | None:intergenic | 30.0% | |
| ! | TGAGTTGAACAAGAAAATTG+AGG | + | chr7_2:81901829-81901848 | None:intergenic | 30.0% |
| ! | CCCAAAGTACCAAATAAATT+AGG | + | chr7_2:81902043-81902062 | None:intergenic | 30.0% |
| AATTTATTTGGTACTTTGGG+TGG | - | chr7_2:81902043-81902062 | Msa1081970:intron | 30.0% | |
| TCTCCATGCAATACAAAAAA+TGG | + | chr7_2:81902090-81902109 | None:intergenic | 30.0% | |
| AAGACAATTAAATTGTACCC+TGG | - | chr7_2:81902174-81902193 | Msa1081970:intron | 30.0% | |
| !!! | ACTTTTTCAATGTTGTCATC+TGG | + | chr7_2:81902228-81902247 | None:intergenic | 30.0% |
| AATTGGATGTGTAGAATCAT+AGG | + | chr7_2:81902298-81902317 | None:intergenic | 30.0% | |
| AGACTATGAAACAATCTCAT+AGG | - | chr7_2:81902370-81902389 | Msa1081970:intron | 30.0% | |
| !! | TTTCATTCTAATTTGCTGAG+TGG | + | chr7_2:81902440-81902459 | None:intergenic | 30.0% |
| TGATTGATCTGCAAGTGAAA+GGG | + | chr7_2:81897681-81897700 | None:intergenic | 35.0% | |
| CAGATCAATCACTTGTTCAT+AGG | - | chr7_2:81897690-81897709 | Msa1081970:three_prime_UTR | 35.0% | |
| AGTTGATCAGATCGATTAAC+TGG | - | chr7_2:81897730-81897749 | Msa1081970:exon | 35.0% | |
| ! | GATCGATTAACTGGTTGATA+TGG | - | chr7_2:81897739-81897758 | Msa1081970:CDS | 35.0% |
| !! | TATAACTCGTGAAAGTACCT+CGG | + | chr7_2:81897859-81897878 | None:intergenic | 35.0% |
| ! | TGCAACTTTTCACCTGTAAA+TGG | - | chr7_2:81898071-81898090 | Msa1081970:CDS | 35.0% |
| ACATAATGGCAACCATTTAC+AGG | + | chr7_2:81898086-81898105 | None:intergenic | 35.0% | |
| AAATGCTCATGTCGTCAAAT+TGG | - | chr7_2:81898426-81898445 | Msa1081970:intron | 35.0% | |
| ! | GTATTCTTTTCTCATTGGAG+AGG | + | chr7_2:81898794-81898813 | None:intergenic | 35.0% |
| !!! | TGCATTTTTTTTCCAATCGG+AGG | + | chr7_2:81898846-81898865 | None:intergenic | 35.0% |
| CTAATAAATGGACACCAGAT+CGG | + | chr7_2:81898976-81898995 | None:intergenic | 35.0% | |
| ! | TTCGTACACCATTTTCTGAT+GGG | + | chr7_2:81899418-81899437 | None:intergenic | 35.0% |
| ! | TTTCGTACACCATTTTCTGA+TGG | + | chr7_2:81899419-81899438 | None:intergenic | 35.0% |
| GACTACATATTTAGTTGGGT+TGG | + | chr7_2:81899498-81899517 | None:intergenic | 35.0% | |
| ACATATAGAATTATGGGAGG+GGG | - | chr7_2:81899993-81900012 | Msa1081970:intron | 35.0% | |
| ! | CTGACACTAGATTTTTCGTT+GGG | + | chr7_2:81900031-81900050 | None:intergenic | 35.0% |
| GGAACAGTTTAACAGTAAGA+AGG | - | chr7_2:81900184-81900203 | Msa1081970:intron | 35.0% | |
| TTTAACAGTAAGAAGGACGA+TGG | - | chr7_2:81900191-81900210 | Msa1081970:intron | 35.0% | |
| ! | ACGATGGTTGTTTGTGTTTT+TGG | - | chr7_2:81900207-81900226 | Msa1081970:intron | 35.0% |
| ACAAGTTAACATGATCGAGA+AGG | - | chr7_2:81900350-81900369 | Msa1081970:intron | 35.0% | |
| AGCTAATTATGGTAGCATGA+TGG | - | chr7_2:81900431-81900450 | Msa1081970:intron | 35.0% | |
| GCTAATTATGGTAGCATGAT+GGG | - | chr7_2:81900432-81900451 | Msa1081970:intron | 35.0% | |
| TACACCATACACAGCATATT+TGG | + | chr7_2:81900490-81900509 | None:intergenic | 35.0% | |
| GTGTATGGTGTAGATTATGA+AGG | - | chr7_2:81900498-81900517 | Msa1081970:intron | 35.0% | |
| !!! | GACTTTTTCAAGTCAGTTAG+TGG | - | chr7_2:81900588-81900607 | Msa1081970:intron | 35.0% |
| ! | TTTCAAGTCAGTTAGTGGTA+TGG | - | chr7_2:81900593-81900612 | Msa1081970:intron | 35.0% |
| ! | TTCAGTTCTCCAAGAGTATA+AGG | - | chr7_2:81900692-81900711 | Msa1081970:intron | 35.0% |
| ! | TCAGTTCTCCAAGAGTATAA+GGG | - | chr7_2:81900693-81900712 | Msa1081970:intron | 35.0% |
| ! | TAGCTTTTCCCTTATACTCT+TGG | + | chr7_2:81900704-81900723 | None:intergenic | 35.0% |
| ! | AAGAGTATAAGGGAAAAGCT+AGG | - | chr7_2:81900703-81900722 | Msa1081970:intron | 35.0% |
| ! | ATCAAAAGGACCCTTCTTTT+TGG | - | chr7_2:81900772-81900791 | Msa1081970:intron | 35.0% |
| ! | TCAAAAGGACCCTTCTTTTT+GGG | - | chr7_2:81900773-81900792 | Msa1081970:intron | 35.0% |
| ! | GAAATTGATGACATCCTTTG+TGG | + | chr7_2:81901085-81901104 | None:intergenic | 35.0% |
| TATACCACTTCCTTTGACAA+TGG | - | chr7_2:81901245-81901264 | Msa1081970:intron | 35.0% | |
| TTATCTGCAACCATTGTCAA+AGG | + | chr7_2:81901258-81901277 | None:intergenic | 35.0% | |
| TTTGACAATGGTTGCAGATA+AGG | - | chr7_2:81901257-81901276 | Msa1081970:intron | 35.0% | |
| ! | GCTGGTTCTTAACATTTCTA+GGG | + | chr7_2:81901326-81901345 | None:intergenic | 35.0% |
| !! | TGCTGGTTCTTAACATTTCT+AGG | + | chr7_2:81901327-81901346 | None:intergenic | 35.0% |
| TCTTGAAGACACCTTATACA+AGG | - | chr7_2:81901351-81901370 | Msa1081970:intron | 35.0% | |
| ! | TAAGCATTGTTGAGACTGTT+TGG | - | chr7_2:81901484-81901503 | Msa1081970:intron | 35.0% |
| !! | TCCGGGATAACTTTTGAAAA+CGG | - | chr7_2:81901563-81901582 | Msa1081970:intron | 35.0% |
| ! | ACCGTTTTCAAAAGTTATCC+CGG | + | chr7_2:81901567-81901586 | None:intergenic | 35.0% |
| !! | ATCCTATTCAAAAAGGCATC+CGG | + | chr7_2:81901732-81901751 | None:intergenic | 35.0% |
| TTAAATTGTACCCTGGAATG+TGG | - | chr7_2:81902181-81902200 | Msa1081970:intron | 35.0% | |
| TCATGGTTACAAGTCTCAAT+TGG | + | chr7_2:81902315-81902334 | None:intergenic | 35.0% | |
| AGGCGAAAAAGTTATCTTTG+TGG | - | chr7_2:81902390-81902409 | Msa1081970:intron | 35.0% | |
| AGTTATCTTTGTGGCTTGAA+AGG | - | chr7_2:81902399-81902418 | Msa1081970:intron | 35.0% | |
| ACATCATGAACCTACATTCA+TGG | + | chr7_2:81902489-81902508 | None:intergenic | 35.0% | |
| GTGATTGATCTGCAAGTGAA+AGG | + | chr7_2:81897682-81897701 | None:intergenic | 40.0% | |
| GTTGCCATTATGTTCTCCAA+AGG | - | chr7_2:81898093-81898112 | Msa1081970:intron | 40.0% | |
| ! | AGAGCCTTTGGAGAACATAA+TGG | + | chr7_2:81898100-81898119 | None:intergenic | 40.0% |
| ATTATGTTCTCCAAAGGCTC+TGG | - | chr7_2:81898099-81898118 | Msa1081970:intron | 40.0% | |
| CAAAGAAAAACCAGAGCCTT+TGG | + | chr7_2:81898112-81898131 | None:intergenic | 40.0% | |
| AAAAAGGGGGGGAATAGAAA+AGG | + | chr7_2:81898323-81898342 | None:intergenic | 40.0% | |
| !!! | TTCTATTCCCCCCCTTTTTT+TGG | - | chr7_2:81898324-81898343 | Msa1081970:intron | 40.0% |
| !! | CATGCTTTGGGGTCAATTAT+TGG | - | chr7_2:81898497-81898516 | Msa1081970:intron | 40.0% |
| !! | CTTGTCAGTTTTCTAGAAGG+TGG | - | chr7_2:81898763-81898782 | Msa1081970:intron | 40.0% |
| CACCAGATCGGTATCTTTAT+GGG | + | chr7_2:81898964-81898983 | None:intergenic | 40.0% | |
| ACACCAGATCGGTATCTTTA+TGG | + | chr7_2:81898965-81898984 | None:intergenic | 40.0% | |
| ! | TTTGGTGGTTCAAGCTTTCA+AGG | - | chr7_2:81899273-81899292 | Msa1081970:intron | 40.0% |
| GTGGGAATGGTTTAATGGTA+GGG | + | chr7_2:81899453-81899472 | None:intergenic | 40.0% | |
| TCTTCGTGGGAATGGTTTAA+TGG | + | chr7_2:81899458-81899477 | None:intergenic | 40.0% | |
| TGTATAGACGTGTCTCAAGT+AGG | - | chr7_2:81899547-81899566 | Msa1081970:intron | 40.0% | |
| ! | GCTGACACTAGATTTTTCGT+TGG | + | chr7_2:81900032-81900051 | None:intergenic | 40.0% |
| CGAAAAATCTAGTGTCAGCT+TGG | - | chr7_2:81900033-81900052 | Msa1081970:intron | 40.0% | |
| ! | TCGAGATCTAGAATGATCGT+TGG | - | chr7_2:81900106-81900125 | Msa1081970:intron | 40.0% |
| ! | GATCTAGAATGATCGTTGGT+TGG | - | chr7_2:81900110-81900129 | Msa1081970:intron | 40.0% |
| ! | GGTACTATGTCCTTTTGCTA+CGG | - | chr7_2:81900158-81900177 | Msa1081970:intron | 40.0% |
| ! | TATGTCCTTTTGCTACGGAA+GGG | - | chr7_2:81900163-81900182 | Msa1081970:intron | 40.0% |
| TCATGAGAAAATGTGACGAC+AGG | + | chr7_2:81900253-81900272 | None:intergenic | 40.0% | |
| !! | ATGATGGGTACTACAGAATG+TGG | - | chr7_2:81900447-81900466 | Msa1081970:intron | 40.0% |
| TGTGCCAAATATGCTGTGTA+TGG | - | chr7_2:81900483-81900502 | Msa1081970:intron | 40.0% | |
| GGTGTAGATTATGAAGGACA+TGG | - | chr7_2:81900504-81900523 | Msa1081970:intron | 40.0% | |
| GGAAAAGCTAGGTTCTTGTA+TGG | - | chr7_2:81900714-81900733 | Msa1081970:intron | 40.0% | |
| TTCTTGTATGGAGAGTCCAT+GGG | - | chr7_2:81900726-81900745 | Msa1081970:intron | 40.0% | |
| ACAACGTGTACCTTACACAT+GGG | + | chr7_2:81900819-81900838 | None:intergenic | 40.0% | |
| TACAACGTGTACCTTACACA+TGG | + | chr7_2:81900820-81900839 | None:intergenic | 40.0% | |
| !! | ATGTTGATGACAACTTGGTG+TGG | + | chr7_2:81901018-81901037 | None:intergenic | 40.0% |
| CAATTTCGCCTTCAAAGATC+CGG | - | chr7_2:81901098-81901117 | Msa1081970:intron | 40.0% | |
| !!! | TCTAGGGCTGTTTTTAACCT+GGG | + | chr7_2:81901310-81901329 | None:intergenic | 40.0% |
| !!! | TTCTAGGGCTGTTTTTAACC+TGG | + | chr7_2:81901311-81901330 | None:intergenic | 40.0% |
| ! | AACCGGATGCCTTTTTGAAT+AGG | - | chr7_2:81901727-81901746 | Msa1081970:intron | 40.0% |
| ! | TATTTGTTGGCAAGCCGAAA+AGG | + | chr7_2:81901977-81901996 | None:intergenic | 40.0% |
| ATAATGCCCTGCTTACTTCT+GGG | + | chr7_2:81902131-81902150 | None:intergenic | 40.0% | |
| TATAATGCCCTGCTTACTTC+TGG | + | chr7_2:81902132-81902151 | None:intergenic | 40.0% | |
| TTAAACCATGCCACATTCCA+GGG | + | chr7_2:81902194-81902213 | None:intergenic | 40.0% | |
| ATGTGGCATGGTTTAACATC+TGG | - | chr7_2:81902198-81902217 | Msa1081970:intron | 40.0% | |
| AGAATCATAGGCAGCATTGT+TGG | + | chr7_2:81902286-81902305 | None:intergenic | 40.0% | |
| GTGTCAATGTCTCATTGTCA+TGG | + | chr7_2:81902332-81902351 | None:intergenic | 40.0% | |
| GTCTTTGCTGATGATACAAC+TGG | + | chr7_2:81902354-81902373 | None:intergenic | 40.0% | |
| TTGACTGTGACCATGAATGT+AGG | - | chr7_2:81902476-81902495 | Msa1081970:five_prime_UTR | 40.0% | |
| TGCAAGTGAAAGGGAAACCT+TGG | + | chr7_2:81897672-81897691 | None:intergenic | 45.0% | |
| GTAACATGCATCAGGAGTTC+TGG | - | chr7_2:81898032-81898051 | Msa1081970:CDS | 45.0% | |
| TGAAAAGTTGCACTCCCCTT+GGG | + | chr7_2:81898063-81898082 | None:intergenic | 45.0% | |
| !!! | GCTCTGGTTTTTCTTTGCCA+TGG | - | chr7_2:81898115-81898134 | Msa1081970:intron | 45.0% |
| ATCTGTTGCAGGTTATGGCA+TGG | - | chr7_2:81898229-81898248 | Msa1081970:intron | 45.0% | |
| AGCCCATAAAGATACCGATC+TGG | - | chr7_2:81898959-81898978 | Msa1081970:intron | 45.0% | |
| GGTACCAACAACAGACTTCA+GGG | - | chr7_2:81899226-81899245 | Msa1081970:intron | 45.0% | |
| GATACCCTGAAGTCTGTTGT+TGG | + | chr7_2:81899233-81899252 | None:intergenic | 45.0% | |
| ! | GTACACCATTTTCTGATGGG+TGG | + | chr7_2:81899415-81899434 | None:intergenic | 45.0% |
| TGGTTTAATGGTAGGGACGA+AGG | + | chr7_2:81899446-81899465 | None:intergenic | 45.0% | |
| CGTGGGAATGGTTTAATGGT+AGG | + | chr7_2:81899454-81899473 | None:intergenic | 45.0% | |
| GCTAATCAAGAGCTCTTCGT+GGG | + | chr7_2:81899471-81899490 | None:intergenic | 45.0% | |
| AGCTAATCAAGAGCTCTTCG+TGG | + | chr7_2:81899472-81899491 | None:intergenic | 45.0% | |
| ! | CTATGTCCTTTTGCTACGGA+AGG | - | chr7_2:81900162-81900181 | Msa1081970:intron | 45.0% |
| AGAAAATGTGACGACAGGAG+AGG | + | chr7_2:81900248-81900267 | None:intergenic | 45.0% | |
| GTACTACAGAATGTGGAGTG+CGG | - | chr7_2:81900454-81900473 | Msa1081970:intron | 45.0% | |
| GAAGGACATGGACAATCTGA+AGG | - | chr7_2:81900516-81900535 | Msa1081970:intron | 45.0% | |
| GTTCTTGTATGGAGAGTCCA+TGG | - | chr7_2:81900725-81900744 | Msa1081970:intron | 45.0% | |
| !! | AAGGACCCTTCTTTTTGGGA+TGG | - | chr7_2:81900777-81900796 | Msa1081970:intron | 45.0% |
| GTGGGAACTATCTTCCACTT+TGG | + | chr7_2:81901066-81901085 | None:intergenic | 45.0% | |
| GTGGAAGATAGTTCCCACAA+AGG | - | chr7_2:81901068-81901087 | Msa1081970:intron | 45.0% | |
| AAACCTCACCCTTTCTCGTT+TGG | + | chr7_2:81901124-81901143 | None:intergenic | 45.0% | |
| GCAACCATTGTCAAAGGAAG+TGG | + | chr7_2:81901252-81901271 | None:intergenic | 45.0% | |
| ! | TTTTTAACCTGGGCTTGTCC+TGG | + | chr7_2:81901300-81901319 | None:intergenic | 45.0% |
| GGTGTCTTCAAGATTCATGC+TGG | + | chr7_2:81901344-81901363 | None:intergenic | 45.0% | |
| ! | CTTTGGGTGGAATTTTGAGC+AGG | - | chr7_2:81902056-81902075 | Msa1081970:CDS | 45.0% |
| GTTAAACCATGCCACATTCC+AGG | + | chr7_2:81902195-81902214 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTTATTTTTTTGT+AGG | - | chr7_2:81899128-81899147 | Msa1081970:CDS | 5.0% |
| !! | AATAAAAATATAACAATAAA+TGG | - | chr7_2:81899951-81899970 | Msa1081970:intron | 5.0% |
| ! | ACATGCATCAGGAGTTCTGG+AGG | - | chr7_2:81898035-81898054 | Msa1081970:CDS | 50.0% |
| GTGAAAAGTTGCACTCCCCT+TGG | + | chr7_2:81898064-81898083 | None:intergenic | 50.0% | |
| GAGTGCAGTCGTTTCATGAG+AGG | - | chr7_2:81898251-81898270 | Msa1081970:intron | 50.0% | |
| GTAACGGTTGAACCTCCGAT+TGG | - | chr7_2:81898831-81898850 | Msa1081970:CDS | 50.0% | |
| GGGTACCAACAACAGACTTC+AGG | - | chr7_2:81899225-81899244 | Msa1081970:intron | 50.0% | |
| CGAAGCCACCCATCAGAAAA+TGG | - | chr7_2:81899407-81899426 | Msa1081970:CDS | 50.0% | |
| TCAAGAGCTCTTCGTGGGAA+TGG | + | chr7_2:81899466-81899485 | None:intergenic | 50.0% | |
| CTGTTCCCTTCCGTAGCAAA+AGG | + | chr7_2:81900171-81900190 | None:intergenic | 50.0% | |
| ACGACAGGAGAGGATCTACA+TGG | + | chr7_2:81900238-81900257 | None:intergenic | 50.0% | |
| TTGTATGGAGAGTCCATGGG+TGG | - | chr7_2:81900729-81900748 | Msa1081970:intron | 50.0% | |
| TAGACTAACTGCTCCACCCA+TGG | + | chr7_2:81900745-81900764 | None:intergenic | 50.0% | |
| CAGCGCCATCCCAAAAAGAA+GGG | + | chr7_2:81900785-81900804 | None:intergenic | 50.0% | |
| ACAGCGCCATCCCAAAAAGA+AGG | + | chr7_2:81900786-81900805 | None:intergenic | 50.0% | |
| TCGTTTGGCCGGATCTTTGA+AGG | + | chr7_2:81901109-81901128 | None:intergenic | 50.0% | |
| AAGATCCGGCCAAACGAGAA+AGG | - | chr7_2:81901112-81901131 | Msa1081970:intron | 50.0% | |
| AGATCCGGCCAAACGAGAAA+GGG | - | chr7_2:81901113-81901132 | Msa1081970:intron | 50.0% | |
| TGATATACCAGGACAAGCCC+AGG | - | chr7_2:81901290-81901309 | Msa1081970:intron | 50.0% | |
| TGACAGACCCAGAAGTAAGC+AGG | - | chr7_2:81902121-81902140 | Msa1081970:CDS | 50.0% | |
| GACAGACCCAGAAGTAAGCA+GGG | - | chr7_2:81902122-81902141 | Msa1081970:CDS | 50.0% | |
| TTGTACCCTGGAATGTGGCA+TGG | - | chr7_2:81902186-81902205 | Msa1081970:intron | 50.0% | |
| !! | AGGAGTTCTGGAGGAACCCA+AGG | - | chr7_2:81898044-81898063 | Msa1081970:CDS | 55.0% |
| !! | GGAGTTCTGGAGGAACCCAA+GGG | - | chr7_2:81898045-81898064 | Msa1081970:CDS | 55.0% |
| !! | GAGTTCTGGAGGAACCCAAG+GGG | - | chr7_2:81898046-81898065 | Msa1081970:CDS | 55.0% |
| CCTTACACATGGGTGCGACA+AGG | + | chr7_2:81900809-81900828 | None:intergenic | 55.0% | |
| CCTTGTCGCACCCATGTGTA+AGG | - | chr7_2:81900806-81900825 | Msa1081970:intron | 55.0% | |
| CTCACCCTTTCTCGTTTGGC+CGG | + | chr7_2:81901120-81901139 | None:intergenic | 55.0% | |
| CGGCCAAACGAGAAAGGGTG+AGG | - | chr7_2:81901118-81901137 | Msa1081970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 81897651 | 81902538 | 81897651 | ID=Msa1081970;Name=Msa1081970 |
| chr7_2 | mRNA | 81897651 | 81902538 | 81897651 | ID=Msa1081970-mRNA-1;Parent=Msa1081970;Name=Msa1081970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=107|1|1|1|0.85|0.87|8|86|346 |
| chr7_2 | exon | 81897651 | 81898111 | 81897651 | ID=Msa1081970-mRNA-1:exon:21109;Parent=Msa1081970-mRNA-1 |
| chr7_2 | exon | 81898817 | 81898915 | 81898817 | ID=Msa1081970-mRNA-1:exon:21108;Parent=Msa1081970-mRNA-1 |
| chr7_2 | exon | 81899055 | 81899192 | 81899055 | ID=Msa1081970-mRNA-1:exon:21107;Parent=Msa1081970-mRNA-1 |
| chr7_2 | exon | 81899362 | 81899492 | 81899362 | ID=Msa1081970-mRNA-1:exon:21106;Parent=Msa1081970-mRNA-1 |
| chr7_2 | exon | 81899580 | 81899726 | 81899580 | ID=Msa1081970-mRNA-1:exon:21105;Parent=Msa1081970-mRNA-1 |
| chr7_2 | exon | 81901917 | 81901949 | 81901917 | ID=Msa1081970-mRNA-1:exon:21104;Parent=Msa1081970-mRNA-1 |
| chr7_2 | exon | 81902053 | 81902143 | 81902053 | ID=Msa1081970-mRNA-1:exon:21103;Parent=Msa1081970-mRNA-1 |
| chr7_2 | exon | 81902405 | 81902538 | 81902405 | ID=Msa1081970-mRNA-1:exon:21102;Parent=Msa1081970-mRNA-1 |
| chr7_2 | five_prime_UTR | 81902432 | 81902538 | 81902432 | ID=Msa1081970-mRNA-1:five_prime_utr;Parent=Msa1081970-mRNA-1 |
| chr7_2 | CDS | 81902405 | 81902431 | 81902405 | ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1 |
| chr7_2 | CDS | 81902053 | 81902143 | 81902053 | ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1 |
| chr7_2 | CDS | 81901917 | 81901949 | 81901917 | ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1 |
| chr7_2 | CDS | 81899580 | 81899726 | 81899580 | ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1 |
| chr7_2 | CDS | 81899362 | 81899492 | 81899362 | ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1 |
| chr7_2 | CDS | 81899055 | 81899192 | 81899055 | ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1 |
| chr7_2 | CDS | 81898817 | 81898915 | 81898817 | ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1 |
| chr7_2 | CDS | 81897737 | 81898111 | 81897737 | ID=Msa1081970-mRNA-1:cds;Parent=Msa1081970-mRNA-1 |
| chr7_2 | three_prime_UTR | 81897651 | 81897736 | 81897651 | ID=Msa1081970-mRNA-1:three_prime_utr;Parent=Msa1081970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
