Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366610 | XP_003625919.2 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366610 | sp|Q9C942|CSE_ARATH | 38.516 | 283 | 171 | 3 | 9 | 289 | 41 | 322 | 4.06e-64 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366610 | G7KRW6 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044160 | Msa1366610 | 0.814635 | 1.393224e-51 | -8.615850e-47 |
| Msa0045810 | Msa1366610 | 0.807209 | 5.653398e-50 | -8.615850e-47 |
| Msa0062190 | Msa1366610 | 0.801382 | 9.246296e-49 | -8.615850e-47 |
| Msa0106540 | Msa1366610 | 0.801332 | 9.464633e-49 | -8.615850e-47 |
| Msa1366610 | Msa1405830 | 0.801516 | 8.680504e-49 | -8.615850e-47 |
| Msa1366610 | Msa1433360 | 0.820455 | 6.797130e-53 | -8.615850e-47 |
| Msa1366610 | Msa1449900 | 0.800692 | 1.279133e-48 | -8.615850e-47 |
| Msa0745140 | Msa1366610 | 0.806919 | 6.511556e-50 | -8.615850e-47 |
| Msa0776640 | Msa1366610 | 0.807401 | 5.147447e-50 | -8.615850e-47 |
| Msa0825920 | Msa1366610 | 0.805242 | 1.467249e-49 | -8.615850e-47 |
| Msa0139500 | Msa1366610 | 0.809156 | 2.175387e-50 | -8.615850e-47 |
| Msa0183710 | Msa1366610 | 0.805469 | 1.315125e-49 | -8.615850e-47 |
| Msa0437480 | Msa1366610 | 0.818217 | 2.199674e-52 | -8.615850e-47 |
| Msa0437520 | Msa1366610 | 0.814308 | 1.646034e-51 | -8.615850e-47 |
| Msa0440350 | Msa1366610 | 0.815300 | 9.922766e-52 | -8.615850e-47 |
| Msa1022420 | Msa1366610 | 0.802925 | 4.450902e-49 | -8.615850e-47 |
| Msa1044250 | Msa1366610 | 0.830411 | 2.981523e-55 | -8.615850e-47 |
| Msa1081970 | Msa1366610 | 0.959612 | 1.238133e-117 | -8.615850e-47 |
| Msa1106590 | Msa1366610 | 0.804171 | 2.454830e-49 | -8.615850e-47 |
| Msa0313900 | Msa1366610 | 0.802335 | 5.892077e-49 | -8.615850e-47 |
| Msa0318490 | Msa1366610 | 0.804559 | 2.037925e-49 | -8.615850e-47 |
| Msa0354840 | Msa1366610 | 0.818968 | 1.485907e-52 | -8.615850e-47 |
| Msa1165460 | Msa1366610 | 0.800317 | 1.525435e-48 | -8.615850e-47 |
| Msa1165760 | Msa1366610 | 0.950028 | 3.827171e-108 | -8.615850e-47 |
| Msa0565700 | Msa1366610 | 0.806007 | 1.013995e-49 | -8.615850e-47 |
| Msa0567330 | Msa1366610 | 0.802938 | 4.423957e-49 | -8.615850e-47 |
| Msa0581060 | Msa1366610 | 0.980599 | 1.361456e-150 | -8.615850e-47 |
| Msa0865420 | Msa1366610 | 0.811163 | 8.032638e-51 | -8.615850e-47 |
| Msa0967780 | Msa1366610 | 0.800453 | 1.430957e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366610 | MtrunA17_Chr7g0269371 | 96.532 | 346 | 7 | 1 | 1 | 346 | 1 | 341 | 0.0 | 693 |
| Msa1366610 | MtrunA17_Chr1g0195501 | 71.383 | 311 | 87 | 2 | 1 | 309 | 1 | 311 | 7.56e-169 | 473 |
| Msa1366610 | MtrunA17_Chr1g0212901 | 51.903 | 289 | 138 | 1 | 2 | 289 | 4 | 292 | 1.54e-113 | 332 |
| Msa1366610 | MtrunA17_Chr6g0457581 | 48.264 | 288 | 148 | 1 | 5 | 291 | 51 | 338 | 8.68e-98 | 293 |
| Msa1366610 | MtrunA17_Chr6g0460121 | 49.104 | 279 | 141 | 1 | 14 | 291 | 23 | 301 | 4.20e-97 | 290 |
| Msa1366610 | MtrunA17_Chr7g0215451 | 45.455 | 286 | 155 | 1 | 5 | 289 | 52 | 337 | 7.10e-92 | 278 |
| Msa1366610 | MtrunA17_Chr1g0209741 | 42.756 | 283 | 160 | 1 | 8 | 288 | 93 | 375 | 4.60e-87 | 267 |
| Msa1366610 | MtrunA17_Chr5g0423541 | 43.816 | 283 | 157 | 1 | 8 | 288 | 107 | 389 | 9.21e-85 | 261 |
| Msa1366610 | MtrunA17_Chr4g0047891 | 45.520 | 279 | 150 | 1 | 12 | 288 | 43 | 321 | 6.50e-81 | 249 |
| Msa1366610 | MtrunA17_Chr1g0199771 | 38.047 | 297 | 178 | 5 | 7 | 299 | 30 | 324 | 1.42e-63 | 205 |
| Msa1366610 | MtrunA17_Chr4g0071671 | 37.143 | 280 | 173 | 3 | 12 | 289 | 35 | 313 | 8.04e-62 | 200 |
| Msa1366610 | MtrunA17_Chr6g0484431 | 42.857 | 224 | 125 | 3 | 9 | 229 | 58 | 281 | 2.48e-58 | 190 |
| Msa1366610 | MtrunA17_Chr6g0479331 | 34.155 | 284 | 173 | 9 | 10 | 288 | 114 | 388 | 8.93e-35 | 131 |
| Msa1366610 | MtrunA17_Chr3g0140391 | 30.576 | 278 | 179 | 8 | 16 | 289 | 103 | 370 | 3.74e-34 | 129 |
| Msa1366610 | MtrunA17_Chr6g0484421 | 50.000 | 64 | 32 | 0 | 230 | 293 | 1 | 64 | 7.77e-17 | 74.3 |
| Msa1366610 | MtrunA17_Chr1g0209761 | 50.000 | 66 | 33 | 0 | 223 | 288 | 12 | 77 | 1.20e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366610 | AT3G62860.1 | 67.723 | 347 | 109 | 2 | 1 | 345 | 2 | 347 | 0.0 | 510 |
| Msa1366610 | AT2G47630.1 | 66.476 | 349 | 107 | 3 | 4 | 345 | 5 | 350 | 4.45e-174 | 487 |
| Msa1366610 | AT3G62860.2 | 68.197 | 305 | 94 | 2 | 43 | 345 | 1 | 304 | 5.53e-159 | 447 |
| Msa1366610 | AT2G47630.2 | 65.909 | 308 | 97 | 2 | 43 | 345 | 1 | 305 | 2.10e-150 | 426 |
| Msa1366610 | AT2G47630.3 | 65.347 | 303 | 97 | 2 | 48 | 345 | 26 | 325 | 2.56e-146 | 416 |
| Msa1366610 | AT2G39420.1 | 57.877 | 292 | 122 | 1 | 5 | 295 | 8 | 299 | 1.88e-123 | 358 |
| Msa1366610 | AT2G39410.2 | 55.517 | 290 | 128 | 1 | 4 | 292 | 7 | 296 | 4.40e-119 | 347 |
| Msa1366610 | AT3G55180.1 | 56.597 | 288 | 123 | 1 | 7 | 292 | 4 | 291 | 5.92e-118 | 343 |
| Msa1366610 | AT2G39400.1 | 55.017 | 289 | 129 | 1 | 7 | 294 | 4 | 292 | 7.03e-116 | 338 |
| Msa1366610 | AT3G55190.1 | 46.417 | 321 | 164 | 3 | 1 | 319 | 4 | 318 | 4.95e-104 | 308 |
| Msa1366610 | AT5G16120.3 | 46.622 | 296 | 157 | 1 | 5 | 299 | 53 | 348 | 2.93e-94 | 285 |
| Msa1366610 | AT5G16120.1 | 46.622 | 296 | 157 | 1 | 5 | 299 | 53 | 348 | 2.93e-94 | 285 |
| Msa1366610 | AT5G16120.2 | 46.622 | 296 | 157 | 1 | 5 | 299 | 71 | 366 | 7.62e-94 | 284 |
| Msa1366610 | AT5G16120.4 | 46.622 | 296 | 157 | 1 | 5 | 299 | 85 | 380 | 9.15e-94 | 285 |
| Msa1366610 | AT1G11090.1 | 46.099 | 282 | 150 | 1 | 9 | 288 | 31 | 312 | 4.64e-87 | 265 |
| Msa1366610 | AT2G39400.2 | 53.881 | 219 | 100 | 1 | 6 | 223 | 3 | 221 | 7.95e-83 | 252 |
| Msa1366610 | AT1G77420.1 | 41.115 | 287 | 167 | 1 | 8 | 292 | 94 | 380 | 9.98e-78 | 243 |
| Msa1366610 | AT5G14980.1 | 38.768 | 276 | 166 | 3 | 14 | 287 | 38 | 312 | 1.39e-65 | 210 |
| Msa1366610 | AT1G52760.1 | 38.516 | 283 | 171 | 3 | 9 | 289 | 41 | 322 | 4.13e-65 | 209 |
| Msa1366610 | AT5G19290.1 | 34.471 | 293 | 188 | 3 | 6 | 295 | 30 | 321 | 6.98e-61 | 198 |
| Msa1366610 | AT1G73480.1 | 33.214 | 280 | 171 | 9 | 16 | 290 | 194 | 462 | 9.05e-39 | 143 |
| Msa1366610 | AT1G18360.1 | 33.333 | 279 | 173 | 7 | 16 | 290 | 112 | 381 | 3.43e-37 | 137 |
| Msa1366610 | AT5G11650.1 | 32.130 | 277 | 172 | 9 | 16 | 287 | 110 | 375 | 9.19e-35 | 131 |
| Msa1366610 | AT2G39410.1 | 55.682 | 88 | 38 | 1 | 4 | 90 | 7 | 94 | 8.73e-30 | 110 |
| Msa1366610 | AT5G11650.2 | 25.510 | 196 | 133 | 7 | 16 | 206 | 110 | 297 | 7.18e-14 | 71.6 |
Find 78 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATGCCCTGCTTACTTC+TGG | 0.212230 | tig0018459:-167897 | None:intergenic |
| TTCAGTTCTCCAAGAGTATA+AGG | 0.225869 | tig0018459:+166466 | Msa1366610:intron |
| TACACCATACACAGCATATT+TGG | 0.251718 | tig0018459:-166261 | None:intergenic |
| TGCTGGTTCTTAACATTTCT+AGG | 0.256347 | tig0018459:-167098 | None:intergenic |
| GATCGATTAACTGGTTGATA+TGG | 0.285048 | tig0018459:+163316 | Msa1366610:exon |
| CAGATCAATCACTTGTTCAT+AGG | 0.325445 | tig0018459:+163267 | Msa1366610:five_prime_UTR |
| AAACCTCACCCTTTCTCGTT+TGG | 0.334146 | tig0018459:-166895 | None:intergenic |
| AGTTGATCAGATCGATTAAC+TGG | 0.336765 | tig0018459:+163307 | Msa1366610:five_prime_UTR |
| TGCATAGTTAACCTTGTATA+AGG | 0.346053 | tig0018459:-167136 | None:intergenic |
| ACATAATGGCAACCATTTAC+AGG | 0.354248 | tig0018459:-163660 | None:intergenic |
| TCGTTTGGCCGGATCTTTGA+AGG | 0.358443 | tig0018459:-166880 | None:intergenic |
| GTAACATGCATCAGGAGTTC+TGG | 0.390797 | tig0018459:+163609 | Msa1366610:intron |
| GTTAAACCATGCCACATTCC+AGG | 0.412914 | tig0018459:-167960 | None:intergenic |
| TCAGTTCTCCAAGAGTATAA+GGG | 0.415803 | tig0018459:+166467 | Msa1366610:intron |
| ATAATGCCCTGCTTACTTCT+GGG | 0.425265 | tig0018459:-167896 | None:intergenic |
| TCATGGTTACAAGTCTCAAT+TGG | 0.427472 | tig0018459:-168080 | None:intergenic |
| ACATCATGAACCTACATTCA+TGG | 0.434009 | tig0018459:-168254 | None:intergenic |
| AGACTATGAAACAATCTCAT+AGG | 0.443501 | tig0018459:+168138 | Msa1366610:CDS |
| GTTCTTGTATGGAGAGTCCA+TGG | 0.446963 | tig0018459:+166499 | Msa1366610:CDS |
| GAAATTGATGACATCCTTTG+TGG | 0.451223 | tig0018459:-166856 | None:intergenic |
| AATTGGATGTGTAGAATCAT+AGG | 0.453394 | tig0018459:-168063 | None:intergenic |
| GCTGGTTCTTAACATTTCTA+GGG | 0.456674 | tig0018459:-167097 | None:intergenic |
| AGAGCCTTTGGAGAACATAA+TGG | 0.461952 | tig0018459:-163674 | None:intergenic |
| CTCACCCTTTCTCGTTTGGC+CGG | 0.464749 | tig0018459:-166891 | None:intergenic |
| TGAAAAGTTGCACTCCCCTT+GGG | 0.467830 | tig0018459:-163637 | None:intergenic |
| CAATTTCGCCTTCAAAGATC+CGG | 0.473542 | tig0018459:+166872 | Msa1366610:CDS |
| GGAAAAGCTAGGTTCTTGTA+TGG | 0.474126 | tig0018459:+166488 | Msa1366610:CDS |
| GTGAAAAGTTGCACTCCCCT+TGG | 0.475498 | tig0018459:-163638 | None:intergenic |
| AAGATCCGGCCAAACGAGAA+AGG | 0.479104 | tig0018459:+166886 | Msa1366610:CDS |
| ATTAGTATTTAATTAAGAGC+TGG | 0.479867 | tig0018459:+163222 | None:intergenic |
| AGTTATCTTTGTGGCTTGAA+AGG | 0.484287 | tig0018459:+168167 | Msa1366610:CDS |
| TGACAGACCCAGAAGTAAGC+AGG | 0.496194 | tig0018459:+167889 | Msa1366610:CDS |
| CCTTGTCGCACCCATGTGTA+AGG | 0.496565 | tig0018459:+166580 | Msa1366610:CDS |
| GTCTTTGCTGATGATACAAC+TGG | 0.500765 | tig0018459:-168119 | None:intergenic |
| AGAATCATAGGCAGCATTGT+TGG | 0.502217 | tig0018459:-168051 | None:intergenic |
| GTGATTGATCTGCAAGTGAA+AGG | 0.507057 | tig0018459:-163256 | None:intergenic |
| GTGGGAACTATCTTCCACTT+TGG | 0.507430 | tig0018459:-166837 | None:intergenic |
| ATGTGGCATGGTTTAACATC+TGG | 0.519462 | tig0018459:+167966 | Msa1366610:CDS |
| TGCAAGTGAAAGGGAAACCT+TGG | 0.525288 | tig0018459:-163246 | None:intergenic |
| TGATATACCAGGACAAGCCC+AGG | 0.533416 | tig0018459:+167064 | Msa1366610:CDS |
| AGATCCGGCCAAACGAGAAA+GGG | 0.539898 | tig0018459:+166887 | Msa1366610:CDS |
| AAATTGATGACATCCTTTGT+GGG | 0.543046 | tig0018459:-166855 | None:intergenic |
| TGATTGATCTGCAAGTGAAA+GGG | 0.548164 | tig0018459:-163255 | None:intergenic |
| ATCTGTTGCAGGTTATGGCA+TGG | 0.558684 | tig0018459:+163991 | Msa1366610:intron |
| GGTGTCTTCAAGATTCATGC+TGG | 0.560620 | tig0018459:-167115 | None:intergenic |
| TCTTGAAGACACCTTATACA+AGG | 0.565278 | tig0018459:+167125 | Msa1366610:CDS |
| TTAAACCATGCCACATTCCA+GGG | 0.567753 | tig0018459:-167959 | None:intergenic |
| AGGAGTTCTGGAGGAACCCA+AGG | 0.572295 | tig0018459:+163621 | Msa1366610:intron |
| TACAACGTGTACCTTACACA+TGG | 0.572631 | tig0018459:-166591 | None:intergenic |
| GACAGACCCAGAAGTAAGCA+GGG | 0.576720 | tig0018459:+167890 | Msa1366610:CDS |
| TGTGCCAAATATGCTGTGTA+TGG | 0.584688 | tig0018459:+166257 | Msa1366610:CDS |
| AAGAGTATAAGGGAAAAGCT+AGG | 0.585965 | tig0018459:+166477 | Msa1366610:CDS |
| TAGACTAACTGCTCCACCCA+TGG | 0.587925 | tig0018459:-166516 | None:intergenic |
| TTTCATTCTAATTTGCTGAG+TGG | 0.595665 | tig0018459:-168205 | None:intergenic |
| GTTGCCATTATGTTCTCCAA+AGG | 0.597843 | tig0018459:+163670 | Msa1366610:CDS |
| TTTAATTAAGAGCTGGACCA+AGG | 0.598870 | tig0018459:+163229 | Msa1366610:five_prime_UTR |
| TTCTTGTATGGAGAGTCCAT+GGG | 0.602502 | tig0018459:+166500 | Msa1366610:CDS |
| GAGTGCAGTCGTTTCATGAG+AGG | 0.608720 | tig0018459:+164013 | Msa1366610:CDS |
| GAAGGACATGGACAATCTGA+AGG | 0.609980 | tig0018459:+166290 | Msa1366610:CDS |
| TTGTATGGAGAGTCCATGGG+TGG | 0.611978 | tig0018459:+166503 | Msa1366610:CDS |
| TTGAAGATATCATACCAAAG+TGG | 0.612746 | tig0018459:+166823 | Msa1366610:CDS |
| TTAAATTGTACCCTGGAATG+TGG | 0.615904 | tig0018459:+167949 | Msa1366610:CDS |
| AGAATGAAATAATTACACTC+TGG | 0.620611 | tig0018459:+168219 | Msa1366610:exon |
| ACAACGTGTACCTTACACAT+GGG | 0.621927 | tig0018459:-166590 | None:intergenic |
| TCAATATGTTGATGACAACT+TGG | 0.624135 | tig0018459:-166794 | None:intergenic |
| GTGTCAATGTCTCATTGTCA+TGG | 0.624411 | tig0018459:-168097 | None:intergenic |
| AAGACAATTAAATTGTACCC+TGG | 0.629319 | tig0018459:+167942 | Msa1366610:CDS |
| GTGTATGGTGTAGATTATGA+AGG | 0.634571 | tig0018459:+166272 | Msa1366610:CDS |
| CCTTACACATGGGTGCGACA+AGG | 0.636170 | tig0018459:-166580 | None:intergenic |
| TTGACTGTGACCATGAATGT+AGG | 0.636251 | tig0018459:+168244 | Msa1366610:three_prime_UTR |
| GGTGTAGATTATGAAGGACA+TGG | 0.638840 | tig0018459:+166278 | Msa1366610:CDS |
| TTGTACCCTGGAATGTGGCA+TGG | 0.642467 | tig0018459:+167954 | Msa1366610:CDS |
| GGAGTTCTGGAGGAACCCAA+GGG | 0.647003 | tig0018459:+163622 | Msa1366610:intron |
| ACATGCATCAGGAGTTCTGG+AGG | 0.672710 | tig0018459:+163612 | Msa1366610:intron |
| GTGGAAGATAGTTCCCACAA+AGG | 0.681811 | tig0018459:+166842 | Msa1366610:CDS |
| ATGTTGATGACAACTTGGTG+TGG | 0.690265 | tig0018459:-166789 | None:intergenic |
| GTACTACAGAATGTGGAGTG+CGG | 0.724286 | tig0018459:+166228 | Msa1366610:intron |
| GAGTTCTGGAGGAACCCAAG+GGG | 0.724868 | tig0018459:+163623 | Msa1366610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTTTTTTTTT+TGG | + | tig0018459:166051-166070 | Msa1366610:intron | 0.0% |
| !!! | TAATTTTTTTTTTTTTTTTT+GGG | + | tig0018459:166052-166071 | Msa1366610:intron | 0.0% |
| !!! | AGTTTAAATTTTTTATGAAA+TGG | + | tig0018459:163496-163515 | Msa1366610:intron | 10.0% |
| !! | GCTAATTAATATTAATATTA+TGG | + | tig0018459:163569-163588 | Msa1366610:intron | 10.0% |
| !! | ATTAGAGATAAATAAAATTT+GGG | - | tig0018459:163922-163941 | None:intergenic | 10.0% |
| !! | AATTAGAGATAAATAAAATT+TGG | - | tig0018459:163923-163942 | None:intergenic | 10.0% |
| !!! | TTTTAATTGATTTTACATTT+AGG | + | tig0018459:164965-164984 | Msa1366610:intron | 10.0% |
| !!! | TTTAATTGATTTTACATTTA+GGG | + | tig0018459:164966-164985 | Msa1366610:intron | 10.0% |
| !! | TAAAAAAAAAATCTTAAATG+AGG | - | tig0018459:165359-165378 | None:intergenic | 10.0% |
| !!! | AAAAATAGTTTATCATTTTT+TGG | - | tig0018459:165682-165701 | None:intergenic | 10.0% |
| !! | AAAAAAAACATATAGAATTA+TGG | + | tig0018459:165753-165772 | Msa1366610:intron | 10.0% |
| !! | AAAAAAACATATAGAATTAT+GGG | + | tig0018459:165754-165773 | Msa1366610:intron | 10.0% |
| !!! | TTTTATTTAATCTATAATTG+AGG | + | tig0018459:166950-166969 | Msa1366610:intron | 10.0% |
| !! | TTCAAATATAACCAAAAAAA+GGG | - | tig0018459:164100-164119 | None:intergenic | 15.0% |
| !!! | AATCATGCATATTTTTTTTA+AGG | + | tig0018459:164147-164166 | Msa1366610:intron | 15.0% |
| !! | ATTAAAATTTAAACATGCTT+TGG | + | tig0018459:164246-164265 | Msa1366610:intron | 15.0% |
| !! | TTAAAATTTAAACATGCTTT+GGG | + | tig0018459:164247-164266 | Msa1366610:intron | 15.0% |
| !!! | GTACTAGTTTAATTTTATAA+TGG | + | tig0018459:164671-164690 | Msa1366610:intron | 15.0% |
| !!! | TGAAATTTTTCTTTGAAATT+TGG | + | tig0018459:165017-165036 | Msa1366610:intron | 15.0% |
| !! | CTTTCAAAAAAAAAAAAGTA+TGG | - | tig0018459:165444-165463 | None:intergenic | 15.0% |
| !!! | CATACTTTTTTTTTTTTGAA+AGG | + | tig0018459:165442-165461 | Msa1366610:intron | 15.0% |
| !! | AATATTTAATCAATACAGTT+TGG | + | tig0018459:165510-165529 | Msa1366610:intron | 15.0% |
| !! | ATATGGATTTATAATTAACT+TGG | - | tig0018459:166686-166705 | None:intergenic | 15.0% |
| !!! | TTTTCTAAACAAAAAGTATA+TGG | - | tig0018459:166703-166722 | None:intergenic | 15.0% |
| !! | TAAACAATTTAACGTTTATT+TGG | - | tig0018459:167695-167714 | None:intergenic | 15.0% |
| !!! | AAAATCAAACTATTTTCACT+GGG | - | tig0018459:163460-163479 | None:intergenic | 20.0% |
| !! | TCAAATATAACCAAAAAAAG+GGG | - | tig0018459:164099-164118 | None:intergenic | 20.0% |
| !! | CTTCAAATATAACCAAAAAA+AGG | - | tig0018459:164101-164120 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTATATTTGAAGT+CGG | + | tig0018459:164102-164121 | Msa1366610:intron | 20.0% |
| !! | TAAAATTTAAACATGCTTTG+GGG | + | tig0018459:164248-164267 | Msa1366610:intron | 20.0% |
| !!! | TTTTTCTTTCTTTTTTTGAG+AGG | - | tig0018459:164441-164460 | None:intergenic | 20.0% |
| !! | AGATAGACTTTAAATCTTTA+TGG | + | tig0018459:164465-164484 | Msa1366610:intron | 20.0% |
| !!! | TTATGCATTTTTTTTCCAAT+CGG | - | tig0018459:164611-164630 | None:intergenic | 20.0% |
| !! | AAAATTCGTCATCTAATAAA+TGG | - | tig0018459:164750-164769 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGAACAAGAAAAA+TGG | - | tig0018459:164923-164942 | None:intergenic | 20.0% |
| !!! | AGAGAGATATATTTACATTT+TGG | + | tig0018459:164940-164959 | Msa1366610:intron | 20.0% |
| !!! | AATTTTTCTTTGAAATTTGG+TGG | + | tig0018459:165020-165039 | Msa1366610:intron | 20.0% |
| !!! | TCATATAAATAAGAGTATTG+TGG | - | tig0018459:165107-165126 | None:intergenic | 20.0% |
| !!! | TTCTTTTTACAATTTGAAAG+TGG | + | tig0018459:165145-165164 | Msa1366610:intron | 20.0% |
| !!! | AAAAAAAAAGTATGGTATGT+TGG | - | tig0018459:165436-165455 | None:intergenic | 20.0% |
| !!! | TAATTTTAAGTATGGTATGT+TGG | - | tig0018459:165469-165488 | None:intergenic | 20.0% |
| !!! | TAGCATAGTAATTTTAAGTA+TGG | - | tig0018459:165477-165496 | None:intergenic | 20.0% |
| !! | GTTTGGAAAATAGAATAAAT+TGG | + | tig0018459:165527-165546 | Msa1366610:intron | 20.0% |
| !! | ATTGTTCTACAAATTTACTT+AGG | - | tig0018459:165594-165613 | None:intergenic | 20.0% |
| !! | CATTTCTTATGAAGTAATTA+AGG | + | tig0018459:165904-165923 | Msa1366610:intron | 20.0% |
| !!! | ATTTTCTCATGAAAAATTCA+TGG | + | tig0018459:166028-166047 | Msa1366610:intron | 20.0% |
| !!! | ATAAGACACATTTTTTTCTA+AGG | - | tig0018459:166093-166112 | None:intergenic | 20.0% |
| !! | AGTACTATAGATATATGTTT+AGG | + | tig0018459:166172-166191 | Msa1366610:intron | 20.0% |
| !! | GTACTATAGATATATGTTTA+GGG | + | tig0018459:166173-166192 | Msa1366610:intron | 20.0% |
| !! | AATGAATGATGAAACTATAA+TGG | - | tig0018459:166435-166454 | None:intergenic | 20.0% |
| !! | GTAAAAAATCTTTACATTAC+AGG | + | tig0018459:166652-166671 | Msa1366610:intron | 20.0% |
| !! | CTAAAGTAAACATGAAAATA+TGG | + | tig0018459:166731-166750 | Msa1366610:intron | 20.0% |
| !!! | ACTTATTTGAACTTTTTTTG+AGG | + | tig0018459:167205-167224 | Msa1366610:intron | 20.0% |
| !!! | CTTATTTGAACTTTTTTTGA+GGG | + | tig0018459:167206-167225 | Msa1366610:intron | 20.0% |
| !!! | ACTTATTTCTATAAATTCTC+CGG | + | tig0018459:167319-167338 | Msa1366610:intron | 20.0% |
| !!! | CAAATTGTTTTTCTTTTAAC+CGG | + | tig0018459:167476-167495 | Msa1366610:intron | 20.0% |
| !! | AAAATCAATCCTATTCAAAA+AGG | - | tig0018459:167505-167524 | None:intergenic | 20.0% |
| !!! | ATCACTTTTAGTTTTTGTTA+CGG | + | tig0018459:167664-167683 | Msa1366610:intron | 20.0% |
| !!! | ATAATCAAGTTACCTTTTTT+CGG | + | tig0018459:167728-167747 | Msa1366610:intron | 20.0% |
| !!! | GTGTTAATTTGAATATTTGT+TGG | - | tig0018459:167758-167777 | None:intergenic | 20.0% |
| !! | CATATCATACCTAATTTATT+TGG | + | tig0018459:167799-167818 | Msa1366610:intron | 20.0% |
| !! | CAAAATCAAACTATTTTCAC+TGG | - | tig0018459:163461-163480 | None:intergenic | 25.0% |
| !! | TGATTTTGTAACCTTATGAA+CGG | + | tig0018459:163473-163492 | Msa1366610:intron | 25.0% |
| ! | AAATTTAAACTCCGTTCATA+AGG | - | tig0018459:163487-163506 | None:intergenic | 25.0% |
| ! | TTTCATTAAATATCTGTTGC+AGG | + | tig0018459:163980-163999 | Msa1366610:intron | 25.0% |
| ! | TTGATTGATAAACAAGTTAC+TGG | - | tig0018459:164053-164072 | None:intergenic | 25.0% |
| ! | AAATATAACCAAAAAAAGGG+GGG | - | tig0018459:164097-164116 | None:intergenic | 25.0% |
| ! | CAAATATAACCAAAAAAAGG+GGG | - | tig0018459:164098-164117 | None:intergenic | 25.0% |
| !! | TATATTTGAAGTCGGTTTAA+AGG | + | tig0018459:164110-164129 | Msa1366610:intron | 25.0% |
| !! | CATTTGTAATGTTTTCTCAT+TGG | - | tig0018459:164561-164580 | None:intergenic | 25.0% |
| ! | ATTACAAATGAGCACTAATT+TGG | + | tig0018459:164571-164590 | Msa1366610:intron | 25.0% |
| ! | AACAAAATTCATCACTTAGT+TGG | - | tig0018459:164781-164800 | None:intergenic | 25.0% |
| ! | TAACGACTACATATTTAGTT+GGG | - | tig0018459:165264-165283 | None:intergenic | 25.0% |
| ! | AAAACATATAGAATTATGGG+AGG | + | tig0018459:165757-165776 | Msa1366610:intron | 25.0% |
| ! | AAACATATAGAATTATGGGA+GGG | + | tig0018459:165758-165777 | Msa1366610:intron | 25.0% |
| ! | AACCCTGAAAAAACAAAATA+TGG | + | tig0018459:165846-165865 | Msa1366610:intron | 25.0% |
| !!! | TGCCATATTTTGTTTTTTCA+GGG | - | tig0018459:165851-165870 | None:intergenic | 25.0% |
| ! | TTCAGATATATTTACGAGAA+AGG | - | tig0018459:166928-166947 | None:intergenic | 25.0% |
| !!! | CTTATTTCTATAAATTCTCC+GGG | + | tig0018459:167320-167339 | Msa1366610:intron | 25.0% |
| !!! | GTGTATGTTTGTTTCTATTT+TGG | + | tig0018459:167446-167465 | Msa1366610:intron | 25.0% |
| !!! | TATGTTTGTTTCTATTTTGG+AGG | + | tig0018459:167449-167468 | Msa1366610:intron | 25.0% |
| ! | CGGTTAAAAGAAAAACAATT+TGG | - | tig0018459:167478-167497 | None:intergenic | 25.0% |
| !! | AAGTTAGAATCAATTTTGGA+AGG | - | tig0018459:167528-167547 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTAGAATCAATTT+TGG | - | tig0018459:167532-167551 | None:intergenic | 25.0% |
| ! | GGCTAAAAATCAAAATTTAG+AGG | - | tig0018459:167574-167593 | None:intergenic | 25.0% |
| ! | AATGTGAATCACTTTATGTT+TGG | - | tig0018459:167640-167659 | None:intergenic | 25.0% |
| ! | ACCTAATTTATTTGGTACTT+TGG | + | tig0018459:167807-167826 | Msa1366610:intron | 25.0% |
| ! | CCTAATTTATTTGGTACTTT+GGG | + | tig0018459:167808-167827 | Msa1366610:intron | 25.0% |
| ! | ATGCAATACAAAAAATGGAA+AGG | - | tig0018459:167853-167872 | None:intergenic | 25.0% |
| !!! | TTTCCATTTTTTGTATTGCA+TGG | + | tig0018459:167852-167871 | Msa1366610:CDS | 25.0% |
| !!! | TTTTTGAAGACATCATAACA+TGG | + | tig0018459:168015-168034 | Msa1366610:CDS | 25.0% |
| ! | AGAATGAAATAATTACACTC+TGG | + | tig0018459:168219-168238 | Msa1366610:exon | 25.0% |
| TATTATGTTTATGTGTTCCG+AGG | + | tig0018459:163416-163435 | Msa1366610:intron | 30.0% | |
| TTATATACGTAACATGCATC+AGG | + | tig0018459:163601-163620 | Msa1366610:intron | 30.0% | |
| AGACAGTGAATTAATTACCA+TGG | - | tig0018459:163712-163731 | None:intergenic | 30.0% | |
| ! | TTTTCTCTCTCTATCTTAGA+AGG | + | tig0018459:163941-163960 | Msa1366610:intron | 30.0% |
| TAAATATCTGTTGCAGGTTA+TGG | + | tig0018459:163986-164005 | Msa1366610:intron | 30.0% | |
| AATATAACCAAAAAAAGGGG+GGG | - | tig0018459:164096-164115 | None:intergenic | 30.0% | |
| ! | TTACTTGTCAGTTTTCTAGA+AGG | + | tig0018459:164522-164541 | Msa1366610:intron | 30.0% |
| AATGAGCACTAATTTGGTAA+CGG | + | tig0018459:164577-164596 | Msa1366610:intron | 30.0% | |
| AATGGATGTCTACCTATATT+TGG | + | tig0018459:164689-164708 | Msa1366610:intron | 30.0% | |
| GCTGAACTAAAACCAAATAT+AGG | - | tig0018459:164704-164723 | None:intergenic | 30.0% | |
| GTAACGACTACATATTTAGT+TGG | - | tig0018459:165265-165284 | None:intergenic | 30.0% | |
| AACATATAGAATTATGGGAG+GGG | + | tig0018459:165759-165778 | Msa1366610:intron | 30.0% | |
| !!! | CTGCCATATTTTGTTTTTTC+AGG | - | tig0018459:165852-165871 | None:intergenic | 30.0% |
| ! | ACGATGGTTATTTGTGTTTT+TGG | + | tig0018459:165974-165993 | Msa1366610:intron | 30.0% |
| GGTTTATCTCTAGCTAATTA+TGG | + | tig0018459:166194-166213 | Msa1366610:intron | 30.0% | |
| TACACTCAAAAGATTAGACA+AGG | - | tig0018459:166401-166420 | None:intergenic | 30.0% | |
| !! | TAGTCTACTTTTGCATCAAA+AGG | + | tig0018459:166532-166551 | Msa1366610:CDS | 30.0% |
| !! | TCAATATGTTGATGACAACT+TGG | - | tig0018459:166797-166816 | None:intergenic | 30.0% |
| TTGAAGATATCATACCAAAG+TGG | + | tig0018459:166823-166842 | Msa1366610:CDS | 30.0% | |
| ! | AAATTGATGACATCCTTTGT+GGG | - | tig0018459:166858-166877 | None:intergenic | 30.0% |
| !! | GAAAAACAAGTTGATATACC+AGG | + | tig0018459:167053-167072 | Msa1366610:CDS | 30.0% |
| TGCATAGTTAACCTTGTATA+AGG | - | tig0018459:167139-167158 | None:intergenic | 30.0% | |
| ! | TGAGTTGAACAAGAAAATTG+AGG | - | tig0018459:167595-167614 | None:intergenic | 30.0% |
| ! | CCCAAAGTACCAAATAAATT+AGG | - | tig0018459:167811-167830 | None:intergenic | 30.0% |
| AATTTATTTGGTACTTTGGG+TGG | + | tig0018459:167811-167830 | Msa1366610:intron | 30.0% | |
| TCTCCATGCAATACAAAAAA+TGG | - | tig0018459:167858-167877 | None:intergenic | 30.0% | |
| AAGACAATTAAATTGTACCC+TGG | + | tig0018459:167942-167961 | Msa1366610:CDS | 30.0% | |
| !!! | ACTTTTTCAATGTTGTCATC+TGG | - | tig0018459:167996-168015 | None:intergenic | 30.0% |
| AATTGGATGTGTAGAATCAT+AGG | - | tig0018459:168066-168085 | None:intergenic | 30.0% | |
| AGACTATGAAACAATCTCAT+AGG | + | tig0018459:168138-168157 | Msa1366610:CDS | 30.0% | |
| !! | TTTCATTCTAATTTGCTGAG+TGG | - | tig0018459:168208-168227 | None:intergenic | 30.0% |
| TTTAATTAAGAGCTGGACCA+AGG | + | tig0018459:163229-163248 | Msa1366610:five_prime_UTR | 35.0% | |
| TGATTGATCTGCAAGTGAAA+GGG | - | tig0018459:163258-163277 | None:intergenic | 35.0% | |
| CAGATCAATCACTTGTTCAT+AGG | + | tig0018459:163267-163286 | Msa1366610:five_prime_UTR | 35.0% | |
| AGTTGATCAGATCGATTAAC+TGG | + | tig0018459:163307-163326 | Msa1366610:five_prime_UTR | 35.0% | |
| ! | GATCGATTAACTGGTTGATA+TGG | + | tig0018459:163316-163335 | Msa1366610:exon | 35.0% |
| !! | TATAACTCGTGAAAGTACCT+CGG | - | tig0018459:163436-163455 | None:intergenic | 35.0% |
| ! | TGCAACTTTTCACCTGTAAA+TGG | + | tig0018459:163648-163667 | Msa1366610:CDS | 35.0% |
| ACATAATGGCAACCATTTAC+AGG | - | tig0018459:163663-163682 | None:intergenic | 35.0% | |
| CAAAGAAAAACTAGAGCCTT+TGG | - | tig0018459:163689-163708 | None:intergenic | 35.0% | |
| AAATGCTCATGTCGTCAAAT+TGG | + | tig0018459:164188-164207 | Msa1366610:intron | 35.0% | |
| ! | GTAATGTTTTCTCATTGGAG+AGG | - | tig0018459:164556-164575 | None:intergenic | 35.0% |
| !!! | TGCATTTTTTTTCCAATCGG+AGG | - | tig0018459:164608-164627 | None:intergenic | 35.0% |
| CTAATAAATGGACACCAGAT+CGG | - | tig0018459:164738-164757 | None:intergenic | 35.0% | |
| ! | TTCGTACACCATTTTCTGAT+GGG | - | tig0018459:165180-165199 | None:intergenic | 35.0% |
| ! | TTTCGTACACCATTTTCTGA+TGG | - | tig0018459:165181-165200 | None:intergenic | 35.0% |
| GACTACATATTTAGTTGGGT+TGG | - | tig0018459:165260-165279 | None:intergenic | 35.0% | |
| ACATATAGAATTATGGGAGG+GGG | + | tig0018459:165760-165779 | Msa1366610:intron | 35.0% | |
| ! | CTGACACTAGATTTTTCGTT+AGG | - | tig0018459:165798-165817 | None:intergenic | 35.0% |
| GGAACAGTTTAACAGTAAGA+AGG | + | tig0018459:165951-165970 | Msa1366610:intron | 35.0% | |
| TTTAACAGTAAGAAGGACGA+TGG | + | tig0018459:165958-165977 | Msa1366610:intron | 35.0% | |
| ACAAGTTAACATGATCGAGA+AGG | + | tig0018459:166124-166143 | Msa1366610:intron | 35.0% | |
| AGCTAATTATGGTAGCATGA+TGG | + | tig0018459:166205-166224 | Msa1366610:intron | 35.0% | |
| GCTAATTATGGTAGCATGAT+GGG | + | tig0018459:166206-166225 | Msa1366610:intron | 35.0% | |
| TACACCATACACAGCATATT+TGG | - | tig0018459:166264-166283 | None:intergenic | 35.0% | |
| GTGTATGGTGTAGATTATGA+AGG | + | tig0018459:166272-166291 | Msa1366610:CDS | 35.0% | |
| !!! | GACTTTTTCAAGTCAGTTAG+TGG | + | tig0018459:166362-166381 | Msa1366610:CDS | 35.0% |
| ! | TTTCAAGTCAGTTAGTGGTA+TGG | + | tig0018459:166367-166386 | Msa1366610:intron | 35.0% |
| ! | TTCAGTTCTCCAAGAGTATA+AGG | + | tig0018459:166466-166485 | Msa1366610:intron | 35.0% |
| ! | TCAGTTCTCCAAGAGTATAA+GGG | + | tig0018459:166467-166486 | Msa1366610:intron | 35.0% |
| ! | TAGCTTTTCCCTTATACTCT+TGG | - | tig0018459:166478-166497 | None:intergenic | 35.0% |
| ! | AAGAGTATAAGGGAAAAGCT+AGG | + | tig0018459:166477-166496 | Msa1366610:CDS | 35.0% |
| ! | ATCAAAAGGACCCTTCTTTT+TGG | + | tig0018459:166546-166565 | Msa1366610:CDS | 35.0% |
| ! | TCAAAAGGACCCTTCTTTTT+GGG | + | tig0018459:166547-166566 | Msa1366610:CDS | 35.0% |
| ! | GAAATTGATGACATCCTTTG+TGG | - | tig0018459:166859-166878 | None:intergenic | 35.0% |
| TATACCACTTCCTTTGACAA+TGG | + | tig0018459:167019-167038 | Msa1366610:intron | 35.0% | |
| TTATCTGCAACCATTGTCAA+AGG | - | tig0018459:167032-167051 | None:intergenic | 35.0% | |
| TTTGACAATGGTTGCAGATA+AGG | + | tig0018459:167031-167050 | Msa1366610:intron | 35.0% | |
| ! | GCTGGTTCTTAACATTTCTA+GGG | - | tig0018459:167100-167119 | None:intergenic | 35.0% |
| !! | TGCTGGTTCTTAACATTTCT+AGG | - | tig0018459:167101-167120 | None:intergenic | 35.0% |
| TCTTGAAGACACCTTATACA+AGG | + | tig0018459:167125-167144 | Msa1366610:CDS | 35.0% | |
| ! | TAAGCATTGTTGAGACTGTT+TGG | + | tig0018459:167258-167277 | Msa1366610:intron | 35.0% |
| !! | TCCGGGATAACTTTTGAAAA+CGG | + | tig0018459:167337-167356 | Msa1366610:intron | 35.0% |
| !! | ATCCTATTCAAAAAGGCATC+CGG | - | tig0018459:167498-167517 | None:intergenic | 35.0% |
| TTAAATTGTACCCTGGAATG+TGG | + | tig0018459:167949-167968 | Msa1366610:CDS | 35.0% | |
| TCATGGTTACAAGTCTCAAT+TGG | - | tig0018459:168083-168102 | None:intergenic | 35.0% | |
| AGGCGAAAAAGTTATCTTTG+TGG | + | tig0018459:168158-168177 | Msa1366610:CDS | 35.0% | |
| AGTTATCTTTGTGGCTTGAA+AGG | + | tig0018459:168167-168186 | Msa1366610:CDS | 35.0% | |
| ACATCATGAACCTACATTCA+TGG | - | tig0018459:168257-168276 | None:intergenic | 35.0% | |
| GTGATTGATCTGCAAGTGAA+AGG | - | tig0018459:163259-163278 | None:intergenic | 40.0% | |
| GTTGCCATTATGTTCTCCAA+AGG | + | tig0018459:163670-163689 | Msa1366610:CDS | 40.0% | |
| ! | AGAGCCTTTGGAGAACATAA+TGG | - | tig0018459:163677-163696 | None:intergenic | 40.0% |
| !!! | GCTCTAGTTTTTCTTTGCCA+TGG | + | tig0018459:163692-163711 | Msa1366610:CDS | 40.0% |
| TTTCCTTAACCAGTGTCTCA+GGG | - | tig0018459:163770-163789 | None:intergenic | 40.0% | |
| AAAAAGGGGGGGAATAGAAA+AGG | - | tig0018459:164085-164104 | None:intergenic | 40.0% | |
| !!! | TTCTATTCCCCCCCTTTTTT+TGG | + | tig0018459:164086-164105 | Msa1366610:intron | 40.0% |
| !! | CATGCTTTGGGGTCAATTAT+TGG | + | tig0018459:164259-164278 | Msa1366610:intron | 40.0% |
| !! | CTTGTCAGTTTTCTAGAAGG+TGG | + | tig0018459:164525-164544 | Msa1366610:intron | 40.0% |
| CACCAGATCGGTATCTTTAT+GGG | - | tig0018459:164726-164745 | None:intergenic | 40.0% | |
| ACACCAGATCGGTATCTTTA+TGG | - | tig0018459:164727-164746 | None:intergenic | 40.0% | |
| GTACCAACAACAGAACTTCA+GGG | + | tig0018459:164988-165007 | Msa1366610:intron | 40.0% | |
| ATACCCTGAAGTTCTGTTGT+TGG | - | tig0018459:164994-165013 | None:intergenic | 40.0% | |
| ! | TTTGGTGGTTCAAGCTTTCA+AGG | + | tig0018459:165035-165054 | Msa1366610:intron | 40.0% |
| GTGGGAATGGTTTAATGGTA+GGG | - | tig0018459:165215-165234 | None:intergenic | 40.0% | |
| TCTTCGTGGGAATGGTTTAA+TGG | - | tig0018459:165220-165239 | None:intergenic | 40.0% | |
| TGTATAGACGTGTCTCAAGT+AGG | + | tig0018459:165309-165328 | Msa1366610:intron | 40.0% | |
| CGAAAAATCTAGTGTCAGCA+TGG | + | tig0018459:165800-165819 | Msa1366610:intron | 40.0% | |
| ! | TCGAGATCTAGAATGATCGT+TGG | + | tig0018459:165873-165892 | Msa1366610:intron | 40.0% |
| ! | GATCTAGAATGATCGTTGGT+TGG | + | tig0018459:165877-165896 | Msa1366610:intron | 40.0% |
| ! | GGTACTATGTCCTTTTGCTA+CGG | + | tig0018459:165925-165944 | Msa1366610:intron | 40.0% |
| ! | TATGTCCTTTTGCTACGGAA+GGG | + | tig0018459:165930-165949 | Msa1366610:intron | 40.0% |
| TCATGAGAAAATGTGACGAC+AGG | - | tig0018459:166020-166039 | None:intergenic | 40.0% | |
| !! | ATGATGGGTACTACAGAATG+TGG | + | tig0018459:166221-166240 | Msa1366610:intron | 40.0% |
| TGTGCCAAATATGCTGTGTA+TGG | + | tig0018459:166257-166276 | Msa1366610:CDS | 40.0% | |
| GGTGTAGATTATGAAGGACA+TGG | + | tig0018459:166278-166297 | Msa1366610:CDS | 40.0% | |
| GGAAAAGCTAGGTTCTTGTA+TGG | + | tig0018459:166488-166507 | Msa1366610:CDS | 40.0% | |
| TTCTTGTATGGAGAGTCCAT+GGG | + | tig0018459:166500-166519 | Msa1366610:CDS | 40.0% | |
| ACAACGTGTACCTTACACAT+GGG | - | tig0018459:166593-166612 | None:intergenic | 40.0% | |
| TACAACGTGTACCTTACACA+TGG | - | tig0018459:166594-166613 | None:intergenic | 40.0% | |
| !! | ATGTTGATGACAACTTGGTG+TGG | - | tig0018459:166792-166811 | None:intergenic | 40.0% |
| CAATTTCGCCTTCAAAGATC+CGG | + | tig0018459:166872-166891 | Msa1366610:CDS | 40.0% | |
| !!! | TCTAGGGCTGTTTTTAACCT+GGG | - | tig0018459:167084-167103 | None:intergenic | 40.0% |
| !!! | TTCTAGGGCTGTTTTTAACC+TGG | - | tig0018459:167085-167104 | None:intergenic | 40.0% |
| !! | GCCGTTTTCAAAAGTTATCC+CGG | - | tig0018459:167341-167360 | None:intergenic | 40.0% |
| ! | AACCGGATGCCTTTTTGAAT+AGG | + | tig0018459:167493-167512 | Msa1366610:intron | 40.0% |
| TTTGTTGGCAAGCCGAAAAA+AGG | - | tig0018459:167743-167762 | None:intergenic | 40.0% | |
| ATAATGCCCTGCTTACTTCT+GGG | - | tig0018459:167899-167918 | None:intergenic | 40.0% | |
| TATAATGCCCTGCTTACTTC+TGG | - | tig0018459:167900-167919 | None:intergenic | 40.0% | |
| TTAAACCATGCCACATTCCA+GGG | - | tig0018459:167962-167981 | None:intergenic | 40.0% | |
| ATGTGGCATGGTTTAACATC+TGG | + | tig0018459:167966-167985 | Msa1366610:CDS | 40.0% | |
| AGAATCATAGGCAGCATTGT+TGG | - | tig0018459:168054-168073 | None:intergenic | 40.0% | |
| GTGTCAATGTCTCATTGTCA+TGG | - | tig0018459:168100-168119 | None:intergenic | 40.0% | |
| GTCTTTGCTGATGATACAAC+TGG | - | tig0018459:168122-168141 | None:intergenic | 40.0% | |
| TTGACTGTGACCATGAATGT+AGG | + | tig0018459:168244-168263 | Msa1366610:three_prime_UTR | 40.0% | |
| TGCAAGTGAAAGGGAAACCT+TGG | - | tig0018459:163249-163268 | None:intergenic | 45.0% | |
| GTAACATGCATCAGGAGTTC+TGG | + | tig0018459:163609-163628 | Msa1366610:intron | 45.0% | |
| TGAAAAGTTGCACTCCCCTT+GGG | - | tig0018459:163640-163659 | None:intergenic | 45.0% | |
| TTCCTTAACCAGTGTCTCAG+GGG | - | tig0018459:163769-163788 | None:intergenic | 45.0% | |
| GTTTCCTTAACCAGTGTCTC+AGG | - | tig0018459:163771-163790 | None:intergenic | 45.0% | |
| GATTCCTTAACTAATGCCCC+CGG | + | tig0018459:163880-163899 | Msa1366610:intron | 45.0% | |
| ATTCCTTAACTAATGCCCCC+GGG | + | tig0018459:163881-163900 | Msa1366610:intron | 45.0% | |
| ATCTGTTGCAGGTTATGGCA+TGG | + | tig0018459:163991-164010 | Msa1366610:intron | 45.0% | |
| AGCCCATAAAGATACCGATC+TGG | + | tig0018459:164721-164740 | Msa1366610:intron | 45.0% | |
| GGTACCAACAACAGAACTTC+AGG | + | tig0018459:164987-165006 | Msa1366610:intron | 45.0% | |
| ! | GTACACCATTTTCTGATGGG+TGG | - | tig0018459:165177-165196 | None:intergenic | 45.0% |
| TGGTTTAATGGTAGGGACGA+AGG | - | tig0018459:165208-165227 | None:intergenic | 45.0% | |
| CGTGGGAATGGTTTAATGGT+AGG | - | tig0018459:165216-165235 | None:intergenic | 45.0% | |
| GCTAATCAAGAGCTCTTCGT+GGG | - | tig0018459:165233-165252 | None:intergenic | 45.0% | |
| AGCTAATCAAGAGCTCTTCG+TGG | - | tig0018459:165234-165253 | None:intergenic | 45.0% | |
| ! | CTATGTCCTTTTGCTACGGA+AGG | + | tig0018459:165929-165948 | Msa1366610:intron | 45.0% |
| AGAAAATGTGACGACAGGAG+AGG | - | tig0018459:166015-166034 | None:intergenic | 45.0% | |
| GTACTACAGAATGTGGAGTG+CGG | + | tig0018459:166228-166247 | Msa1366610:intron | 45.0% | |
| GAAGGACATGGACAATCTGA+AGG | + | tig0018459:166290-166309 | Msa1366610:CDS | 45.0% | |
| GTTCTTGTATGGAGAGTCCA+TGG | + | tig0018459:166499-166518 | Msa1366610:CDS | 45.0% | |
| !! | AAGGACCCTTCTTTTTGGGA+TGG | + | tig0018459:166551-166570 | Msa1366610:CDS | 45.0% |
| GTGGGAACTATCTTCCACTT+TGG | - | tig0018459:166840-166859 | None:intergenic | 45.0% | |
| GTGGAAGATAGTTCCCACAA+AGG | + | tig0018459:166842-166861 | Msa1366610:CDS | 45.0% | |
| AAACCTCACCCTTTCTCGTT+TGG | - | tig0018459:166898-166917 | None:intergenic | 45.0% | |
| GCAACCATTGTCAAAGGAAG+TGG | - | tig0018459:167026-167045 | None:intergenic | 45.0% | |
| ! | TTTTTAACCTGGGCTTGTCC+TGG | - | tig0018459:167074-167093 | None:intergenic | 45.0% |
| GGTGTCTTCAAGATTCATGC+TGG | - | tig0018459:167118-167137 | None:intergenic | 45.0% | |
| ! | CTTTGGGTGGAATTTTGAGC+AGG | + | tig0018459:167824-167843 | Msa1366610:intron | 45.0% |
| GTTAAACCATGCCACATTCC+AGG | - | tig0018459:167963-167982 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTTATTTTTTTGT+AGG | + | tig0018459:164889-164908 | Msa1366610:intron | 5.0% |
| !! | AATAAAAATATAACAATAAA+TGG | + | tig0018459:165717-165736 | Msa1366610:intron | 5.0% |
| ! | ACATGCATCAGGAGTTCTGG+AGG | + | tig0018459:163612-163631 | Msa1366610:intron | 50.0% |
| GTGAAAAGTTGCACTCCCCT+TGG | - | tig0018459:163641-163660 | None:intergenic | 50.0% | |
| GAGTGCAGTCGTTTCATGAG+AGG | + | tig0018459:164013-164032 | Msa1366610:CDS | 50.0% | |
| GTAACGGTTGAACCTCCGAT+TGG | + | tig0018459:164593-164612 | Msa1366610:intron | 50.0% | |
| CGAAGCCACCCATCAGAAAA+TGG | + | tig0018459:165169-165188 | Msa1366610:intron | 50.0% | |
| TCAAGAGCTCTTCGTGGGAA+TGG | - | tig0018459:165228-165247 | None:intergenic | 50.0% | |
| CTGTTCCCTTCCGTAGCAAA+AGG | - | tig0018459:165938-165957 | None:intergenic | 50.0% | |
| ACGACAGGAGAGGATCTACA+TGG | - | tig0018459:166005-166024 | None:intergenic | 50.0% | |
| TTGTATGGAGAGTCCATGGG+TGG | + | tig0018459:166503-166522 | Msa1366610:CDS | 50.0% | |
| TAGACTAACTGCTCCACCCA+TGG | - | tig0018459:166519-166538 | None:intergenic | 50.0% | |
| CAGCGCCATCCCAAAAAGAA+GGG | - | tig0018459:166559-166578 | None:intergenic | 50.0% | |
| ACAGCGCCATCCCAAAAAGA+AGG | - | tig0018459:166560-166579 | None:intergenic | 50.0% | |
| TCGTTTGGCCGGATCTTTGA+AGG | - | tig0018459:166883-166902 | None:intergenic | 50.0% | |
| AAGATCCGGCCAAACGAGAA+AGG | + | tig0018459:166886-166905 | Msa1366610:CDS | 50.0% | |
| AGATCCGGCCAAACGAGAAA+GGG | + | tig0018459:166887-166906 | Msa1366610:CDS | 50.0% | |
| TGATATACCAGGACAAGCCC+AGG | + | tig0018459:167064-167083 | Msa1366610:CDS | 50.0% | |
| TGACAGACCCAGAAGTAAGC+AGG | + | tig0018459:167889-167908 | Msa1366610:CDS | 50.0% | |
| GACAGACCCAGAAGTAAGCA+GGG | + | tig0018459:167890-167909 | Msa1366610:CDS | 50.0% | |
| TTGTACCCTGGAATGTGGCA+TGG | + | tig0018459:167954-167973 | Msa1366610:CDS | 50.0% | |
| !! | AGGAGTTCTGGAGGAACCCA+AGG | + | tig0018459:163621-163640 | Msa1366610:intron | 55.0% |
| !! | GGAGTTCTGGAGGAACCCAA+GGG | + | tig0018459:163622-163641 | Msa1366610:intron | 55.0% |
| !! | GAGTTCTGGAGGAACCCAAG+GGG | + | tig0018459:163623-163642 | Msa1366610:CDS | 55.0% |
| AACCAATGCCCCTGAGACAC+TGG | + | tig0018459:163758-163777 | Msa1366610:intron | 55.0% | |
| ! | AACCAGTGTCTCAGGGGCAT+TGG | - | tig0018459:163763-163782 | None:intergenic | 55.0% |
| ! | TGCCCCTGAGACACTGGTTA+AGG | + | tig0018459:163764-163783 | Msa1366610:intron | 55.0% |
| CCTTACACATGGGTGCGACA+AGG | - | tig0018459:166583-166602 | None:intergenic | 55.0% | |
| CCTTGTCGCACCCATGTGTA+AGG | + | tig0018459:166580-166599 | Msa1366610:CDS | 55.0% | |
| CTCACCCTTTCTCGTTTGGC+CGG | - | tig0018459:166894-166913 | None:intergenic | 55.0% | |
| !! | GTGCCCGGGGGCATTAGTTA+AGG | - | tig0018459:163887-163906 | None:intergenic | 60.0% |
| TAACTAATGCCCCCGGGCAC+TGG | + | tig0018459:163887-163906 | Msa1366610:intron | 60.0% | |
| TCCTGTTAACCAGTGCCCGG+GGG | - | tig0018459:163899-163918 | None:intergenic | 60.0% | |
| GTCCTGTTAACCAGTGCCCG+GGG | - | tig0018459:163900-163919 | None:intergenic | 60.0% | |
| GGTCCTGTTAACCAGTGCCC+GGG | - | tig0018459:163901-163920 | None:intergenic | 60.0% | |
| GGGTCCTGTTAACCAGTGCC+CGG | - | tig0018459:163902-163921 | None:intergenic | 60.0% | |
| CGGCCAAACGAGAAAGGGTG+AGG | + | tig0018459:166892-166911 | Msa1366610:intron | 60.0% | |
| !! | GCCCCCGGGCACTGGTTAAC+AGG | + | tig0018459:163895-163914 | Msa1366610:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018459 | gene | 163228 | 168306 | 163228 | ID=Msa1366610;Name=Msa1366610 |
| tig0018459 | mRNA | 163228 | 168306 | 163228 | ID=Msa1366610-mRNA-1;Parent=Msa1366610;Name=Msa1366610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=107|1|1|1|0.57|0.5|8|86|346 |
| tig0018459 | exon | 163228 | 163361 | 163228 | ID=Msa1366610-mRNA-1:exon:15149;Parent=Msa1366610-mRNA-1 |
| tig0018459 | exon | 163623 | 163713 | 163623 | ID=Msa1366610-mRNA-1:exon:15150;Parent=Msa1366610-mRNA-1 |
| tig0018459 | exon | 164002 | 164034 | 164002 | ID=Msa1366610-mRNA-1:exon:15151;Parent=Msa1366610-mRNA-1 |
| tig0018459 | exon | 166237 | 166383 | 166237 | ID=Msa1366610-mRNA-1:exon:15152;Parent=Msa1366610-mRNA-1 |
| tig0018459 | exon | 166471 | 166601 | 166471 | ID=Msa1366610-mRNA-1:exon:15153;Parent=Msa1366610-mRNA-1 |
| tig0018459 | exon | 166771 | 166908 | 166771 | ID=Msa1366610-mRNA-1:exon:15154;Parent=Msa1366610-mRNA-1 |
| tig0018459 | exon | 167048 | 167146 | 167048 | ID=Msa1366610-mRNA-1:exon:15155;Parent=Msa1366610-mRNA-1 |
| tig0018459 | exon | 167846 | 168306 | 167846 | ID=Msa1366610-mRNA-1:exon:15156;Parent=Msa1366610-mRNA-1 |
| tig0018459 | five_prime_UTR | 163228 | 163334 | 163228 | ID=Msa1366610-mRNA-1:five_prime_utr;Parent=Msa1366610-mRNA-1 |
| tig0018459 | CDS | 163335 | 163361 | 163335 | ID=Msa1366610-mRNA-1:cds;Parent=Msa1366610-mRNA-1 |
| tig0018459 | CDS | 163623 | 163713 | 163623 | ID=Msa1366610-mRNA-1:cds;Parent=Msa1366610-mRNA-1 |
| tig0018459 | CDS | 164002 | 164034 | 164002 | ID=Msa1366610-mRNA-1:cds;Parent=Msa1366610-mRNA-1 |
| tig0018459 | CDS | 166237 | 166383 | 166237 | ID=Msa1366610-mRNA-1:cds;Parent=Msa1366610-mRNA-1 |
| tig0018459 | CDS | 166471 | 166601 | 166471 | ID=Msa1366610-mRNA-1:cds;Parent=Msa1366610-mRNA-1 |
| tig0018459 | CDS | 166771 | 166908 | 166771 | ID=Msa1366610-mRNA-1:cds;Parent=Msa1366610-mRNA-1 |
| tig0018459 | CDS | 167048 | 167146 | 167048 | ID=Msa1366610-mRNA-1:cds;Parent=Msa1366610-mRNA-1 |
| tig0018459 | CDS | 167846 | 168220 | 167846 | ID=Msa1366610-mRNA-1:cds;Parent=Msa1366610-mRNA-1 |
| tig0018459 | three_prime_UTR | 168221 | 168306 | 168221 | ID=Msa1366610-mRNA-1:three_prime_utr;Parent=Msa1366610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
