AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437480 MtrunA17_Chr3g0091441 96.053 456 16 1 1 454 1 456 0.0 914
Msa0437480 MtrunA17_Chr5g0399001 48.322 447 202 10 9 441 31 462 8.01e-139 406
Msa0437480 MtrunA17_Chr8g0352461 42.697 445 228 9 11 444 4 432 1.19e-116 348
Msa0437480 MtrunA17_Chr8g0352481 42.459 431 227 8 11 435 4 419 1.19e-115 346
Msa0437480 MtrunA17_Chr3g0139441 25.229 218 126 5 13 228 41 223 2.97e-16 80.5
Msa0437480 MtrunA17_Chr7g0268621 25.214 234 137 5 11 241 6 204 1.42e-15 78.2
Msa0437480 MtrunA17_Chr7g0268611 25.506 247 137 6 7 242 4 214 1.86e-14 74.7
Msa0437480 MtrunA17_Chr2g0305211 27.572 243 127 8 9 227 3 220 2.88e-14 74.7
Msa0437480 MtrunA17_Chr2g0305231 27.572 243 127 8 9 227 3 220 2.88e-14 74.7
Msa0437480 MtrunA17_Chr2g0304651 27.099 262 140 10 9 245 3 238 3.25e-14 74.7
Msa0437480 MtrunA17_Chr1g0147221 25.068 367 168 14 13 310 44 372 9.82e-14 72.8
Msa0437480 MtrunA17_Chr2g0301471 28.293 205 104 7 11 198 14 192 2.05e-13 72.4
Msa0437480 MtrunA17_Chr6g0485621 24.658 219 129 8 13 228 34 219 7.22e-13 70.1
Msa0437480 MtrunA17_Chr1g0169111 21.307 352 178 10 13 298 104 422 1.34e-12 69.7
Msa0437480 MtrunA17_Chr2g0304721 26.482 253 135 10 9 236 3 229 1.89e-12 69.3
Msa0437480 MtrunA17_Chr2g0286701 26.891 238 125 8 13 227 16 227 2.51e-12 67.8
Msa0437480 MtrunA17_Chr4g0025641 24.303 251 151 7 11 259 16 229 5.72e-12 65.5
Msa0437480 MtrunA17_Chr7g0262591 24.074 216 125 5 13 228 26 202 6.08e-12 67.4
Msa0437480 MtrunA17_Chr3g0125701 21.264 348 177 8 11 296 7 319 6.20e-12 67.0
Msa0437480 MtrunA17_Chr1g0148801 21.834 229 142 6 13 241 18 209 7.26e-12 67.0
Msa0437480 MtrunA17_Chr4g0070121 30.159 189 88 7 32 201 35 198 1.10e-11 64.7
Msa0437480 MtrunA17_Chr3g0125691 25.000 220 128 6 11 228 7 191 1.97e-11 65.5
Msa0437480 MtrunA17_Chr2g0301661 28.293 205 104 8 11 198 14 192 3.57e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437480 AT5G61290.1 68.293 451 136 5 6 452 11 458 0.0 647
Msa0437480 AT5G07800.1 66.886 456 138 5 3 450 8 458 0.0 641
Msa0437480 AT1G62620.1 46.429 448 219 9 6 443 8 444 2.03e-136 400
Msa0437480 AT1G63370.1 46.205 448 220 9 6 443 8 444 8.09e-136 398
Msa0437480 AT1G62560.1 45.133 452 225 9 1 441 1 440 1.38e-129 383
Msa0437480 AT1G65860.1 45.393 445 221 8 8 443 10 441 2.58e-128 379
Msa0437480 AT1G12200.1 47.523 444 214 10 8 441 11 445 2.65e-126 375
Msa0437480 AT1G62620.2 47.595 395 188 8 6 392 8 391 7.21e-123 363
Msa0437480 AT1G12140.1 45.638 447 219 9 7 443 9 441 1.79e-121 362
Msa0437480 AT1G12140.3 45.638 447 219 9 7 443 9 441 1.79e-121 362
Msa0437480 AT1G62600.1 45.233 451 220 10 7 443 9 446 2.62e-121 361
Msa0437480 AT1G62560.2 46.324 408 198 8 1 399 1 396 2.81e-121 359
Msa0437480 AT1G12160.1 42.549 463 229 7 5 443 6 455 3.04e-121 362
Msa0437480 AT1G12140.2 45.291 446 220 9 7 443 9 439 2.23e-118 354
Msa0437480 AT1G62540.1 45.169 445 222 8 8 443 10 441 4.16e-117 351
Msa0437480 AT1G62570.1 44.176 455 230 9 7 452 9 448 6.21e-116 348
Msa0437480 AT1G62580.2 46.358 453 219 11 2 443 5 444 1.07e-113 342
Msa0437480 AT1G62540.2 43.404 470 219 10 8 443 10 466 2.33e-113 342
Msa0437480 AT1G12130.1 42.765 463 223 9 8 443 10 457 2.38e-112 339
Msa0437480 AT1G62600.2 47.089 395 184 9 7 389 9 390 6.82e-110 330
Msa0437480 AT1G63340.1 44.619 446 197 12 2 443 5 404 2.30e-108 327
Msa0437480 AT1G62580.1 43.416 486 218 14 2 443 5 477 2.87e-105 322
Msa0437480 AT1G62540.3 43.146 445 213 9 8 443 10 423 4.69e-105 319
Msa0437480 AT1G63370.2 46.746 338 164 7 6 338 8 334 2.96e-103 311
Msa0437480 AT1G12200.2 50.448 335 153 8 8 338 11 336 2.13e-98 300
Msa0437480 AT1G62580.3 50.000 350 147 10 2 335 5 342 1.84e-88 274
Msa0437480 AT1G63390.1 50.000 160 69 5 7 161 9 162 1.96e-33 124
Msa0437480 AT5G45180.1 25.567 485 243 19 6 405 8 459 8.45e-23 100
Msa0437480 AT1G19250.1 29.339 242 124 8 8 227 10 226 7.66e-17 83.2
Msa0437480 AT4G13260.2 23.611 216 132 4 13 228 30 212 4.45e-12 67.4
Msa0437480 AT4G32540.1 25.403 248 136 8 3 241 7 214 5.19e-12 67.8
Msa0437480 AT5G25620.2 24.231 260 151 8 13 261 34 258 5.41e-12 67.8
Msa0437480 AT5G25620.1 24.231 260 151 8 13 261 34 258 5.49e-12 67.8
Msa0437480 AT4G32540.2 25.403 248 136 8 3 241 7 214 5.87e-12 67.8
Msa0437480 AT2G33230.1 22.581 217 136 6 13 228 34 219 8.82e-12 67.4
Msa0437480 AT4G13260.1 23.611 216 132 4 13 228 30 212 1.10e-11 67.0
Msa0437480 AT5G11320.2 22.271 229 139 6 13 241 19 208 1.60e-11 65.9
Msa0437480 AT1G04610.1 21.719 221 133 6 13 228 39 224 2.33e-11 65.9
Msa0437480 AT4G28720.1 24.034 233 141 6 13 242 27 226 3.45e-11 65.5

Find 133 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCATGTTACCTTTAA+TGG 0.061625 3_3:-1252916 None:intergenic
CCTTTAATGGATGGCAATTT+TGG 0.152109 3_3:-1252903 None:intergenic
TGGATAGCTCAATTGCTTTC+TGG 0.169069 3_3:+1256197 Msa0437480:CDS
CCTCATGTCTCTACCTTTCT+TGG 0.191684 3_3:-1252646 None:intergenic
CCAAAATTGCCATCCATTAA+AGG 0.193960 3_3:+1252903 Msa0437480:CDS
CTACCTTTCTTGGTAGAAAA+TGG 0.198982 3_3:-1252636 None:intergenic
GGATTAGGTCAGAGAAAATA+AGG 0.240875 3_3:-1252177 None:intergenic
GTTAACAATGGAGTTAATTA+TGG 0.259199 3_3:-1257546 None:intergenic
GTTGGAATGCTTGATGATTA+TGG 0.281682 3_3:+1252768 Msa0437480:CDS
AGAGAGAGATTGAGGGGATT+AGG 0.311577 3_3:-1252192 None:intergenic
GAAAAGAGTTTCTACCTAAA+GGG 0.316983 3_3:-1252539 None:intergenic
GGCATTCCTACTCATGATAT+TGG 0.332854 3_3:+1256293 Msa0437480:CDS
ACCTCATTGTGGAATGGTTC+TGG 0.335360 3_3:-1253318 None:intergenic
GGATAGCTCAATTGCTTTCT+GGG 0.344271 3_3:+1256198 Msa0437480:CDS
TTCTATAACCACCATTCCTT+TGG 0.367024 3_3:-1255569 None:intergenic
CTAGTTCTATTGCTATATCT+TGG 0.369423 3_3:-1253698 None:intergenic
TTATCTCTCTTGCTGCTACT+AGG 0.370276 3_3:-1252425 None:intergenic
TGCCTGCTACTTCTCTTTCA+TGG 0.373660 3_3:-1256274 None:intergenic
AAATGCATAGTCACATTTAC+AGG 0.376176 3_3:+1253292 Msa0437480:CDS
AGAAAAGAGTTTCTACCTAA+AGG 0.378578 3_3:-1252540 None:intergenic
AATTAACTCCATTGTTAACT+TGG 0.387019 3_3:+1257550 Msa0437480:CDS
CTTGATGATTATGGTGTTTG+TGG 0.391657 3_3:+1252777 Msa0437480:CDS
TTGTGATAAGGTTGTGGAAG+AGG 0.392803 3_3:+1252839 Msa0437480:CDS
ATTCCTTTGGTGTCAAGAAA+AGG 0.410339 3_3:-1255556 None:intergenic
AGATGATAAGGTTCAATACT+AGG 0.413544 3_3:+1252736 Msa0437480:CDS
GACTCTATTGTGTATTGTAC+AGG 0.418054 3_3:+1254963 Msa0437480:CDS
TTACCCTTCCATCCTCTTCA+AGG 0.418369 3_3:-1254911 None:intergenic
TTGCAGTATTGTGACAAATA+TGG 0.418374 3_3:+1257467 Msa0437480:intron
AATACTAGGGTTAATTATGT+TGG 0.420112 3_3:+1252750 Msa0437480:CDS
TTGGGTTAAGAGAGATGATA+AGG 0.423127 3_3:+1252724 Msa0437480:CDS
TTCTCCATTCTTGTAATGGT+GGG 0.427729 3_3:-1257505 None:intergenic
ATTGAGCTATCCACATTGCT+TGG 0.438044 3_3:-1256187 None:intergenic
AAGGACTTTGAAGGGCCTCT+TGG 0.444012 3_3:-1257610 None:intergenic
TGCTATATCTTGGCCACTAT+AGG 0.444873 3_3:-1253688 None:intergenic
GAAAGATGTTTGTATTGGTA+AGG 0.452374 3_3:-1252032 None:intergenic
ATAGAAGGTGAAGACCCTTT+AGG 0.453442 3_3:+1252525 Msa0437480:CDS
TAAGAGATGGAGAAAGTAAA+GGG 0.454093 3_3:-1255630 None:intergenic
AGTCCTTACTTCACTCAACT+TGG 0.454993 3_3:+1257626 Msa0437480:CDS
GTGAACCCCATGACTTCTCT+TGG 0.457699 3_3:-1252606 None:intergenic
GATGCAGTGGTTGTTGCCAC+TGG 0.458878 3_3:+1252867 Msa0437480:CDS
GTAAGAGATGGAGAAAGTAA+AGG 0.463625 3_3:-1255631 None:intergenic
TTTCTCCATTCTTGTAATGG+TGG 0.463654 3_3:-1257506 None:intergenic
TTCCTTTGGTGTCAAGAAAA+GGG 0.465946 3_3:-1255555 None:intergenic
TTGAGCTATCCACATTGCTT+GGG 0.470765 3_3:-1256186 None:intergenic
GCACGAGAGTGAGGTTGTAT+TGG 0.471042 3_3:-1252098 None:intergenic
ATAAGTATTTCAACATGGCC+AGG 0.471295 3_3:-1252675 None:intergenic
TGGAAAGTGTGCTCATACAA+AGG 0.471300 3_3:-1255607 None:intergenic
CTTGCTGCTACTAGGCCTGC+TGG 0.473674 3_3:-1252417 None:intergenic
AAAATGAAAGATGTTTGTAT+TGG 0.474886 3_3:-1252037 None:intergenic
TCGAAGAATGTGTGTGTAAT+CGG 0.476098 3_3:+1252387 Msa0437480:CDS
CAAAGAGAAGGATTGTGATA+AGG 0.477585 3_3:+1252827 Msa0437480:CDS
TTCATCATTTCCTCCCATGA+TGG 0.480463 3_3:-1256233 None:intergenic
TATATAACAGGTTGTGGTGG+TGG 0.481545 3_3:+1253656 Msa0437480:intron
AGAGTGAGGTTGTATTGGTA+AGG 0.484691 3_3:-1252093 None:intergenic
AAGGGATATAGTTGAAATGA+GGG 0.489177 3_3:-1252074 None:intergenic
GAAGGATTGTGATAAGGTTG+TGG 0.494699 3_3:+1252833 Msa0437480:CDS
TAAGGGATATAGTTGAAATG+AGG 0.495425 3_3:-1252075 None:intergenic
GTAATCGGTGCTGGACCAGC+AGG 0.501353 3_3:+1252402 Msa0437480:CDS
GAGTGAAGTAAGGACTTTGA+AGG 0.503755 3_3:-1257619 None:intergenic
GCAAGAGAGATAAGAAAAGA+AGG 0.509739 3_3:+1252435 Msa0437480:CDS
GACTCCCACCATTACAAGAA+TGG 0.510699 3_3:+1257501 Msa0437480:CDS
ATCATGTTACCTTTAATGGA+TGG 0.517087 3_3:-1252912 None:intergenic
CATTTACATATTTGTAACCA+TGG 0.519355 3_3:+1252347 Msa0437480:exon
TTACACACACATTCTTCGAT+TGG 0.520487 3_3:-1252383 None:intergenic
GATTAGGTCAGAGAAAATAA+GGG 0.520818 3_3:-1252176 None:intergenic
ATTGCTTGGGACTCAAAGAA+AGG 0.521937 3_3:-1256173 None:intergenic
AGTCCAAGTTGAGTGAAGTA+AGG 0.523677 3_3:-1257629 None:intergenic
ACAATCTCCAAGAGAAGTCA+TGG 0.524334 3_3:+1252599 Msa0437480:CDS
AATGTGTGTGTAATCGGTGC+TGG 0.528554 3_3:+1252393 Msa0437480:CDS
TATAGTTGAAATGAGGGGAT+AGG 0.528749 3_3:-1252068 None:intergenic
AGAGACATGAGGAGGTTCCC+TGG 0.530130 3_3:+1252657 Msa0437480:CDS
GTCAAGAAAAGGGAAGCTAT+AGG 0.535288 3_3:-1255545 None:intergenic
GAGTGAGGTTGTATTGGTAA+GGG 0.540883 3_3:-1252092 None:intergenic
TTGCTTGGGACTCAAAGAAA+GGG 0.544898 3_3:-1256172 None:intergenic
TACCTGTGGATGAAGGTGTA+AGG 0.545448 3_3:-1253808 None:intergenic
GATGATAAGGTTCAATACTA+GGG 0.548336 3_3:+1252737 Msa0437480:CDS
CGCCCTTGAAGAGGATGGAA+GGG 0.549203 3_3:+1254908 Msa0437480:CDS
TTTGTGGAAATAATTTGAAG+TGG 0.551830 3_3:+1252793 Msa0437480:CDS
GTGGTTGGAAATTCCTATAG+TGG 0.553536 3_3:+1253675 Msa0437480:CDS
GATTGTTAGAAGCAAAGAGA+AGG 0.554625 3_3:+1252815 Msa0437480:CDS
TTATCAATACCTGTGGATGA+AGG 0.559071 3_3:-1253815 None:intergenic
GAAAAGAAAGAAAATAGAAG+AGG 0.561713 3_3:-1252152 None:intergenic
AGATATAGCAATAGAACTAG+TGG 0.561789 3_3:+1253701 Msa0437480:CDS
TACCCTTCCATCCTCTTCAA+GGG 0.564528 3_3:-1254910 None:intergenic
ATCTCTTGATACTATAACTG+AGG 0.565528 3_3:+1253755 Msa0437480:CDS
TGGAGACATATCGAGACTCA+TGG 0.565705 3_3:+1257570 Msa0437480:CDS
ATTCTTCGATTGGTTCGTCT+CGG 0.568258 3_3:-1252373 None:intergenic
TAACAGGTTGTGGTGGTGGT+TGG 0.569616 3_3:+1253660 Msa0437480:intron
TTTAAGCTACAAATAGAGAG+TGG 0.570785 3_3:-1252293 None:intergenic
ATTTATATAACAGGTTGTGG+TGG 0.571818 3_3:+1253653 Msa0437480:intron
ATGCCTATAAAAGTAAGAGA+TGG 0.574083 3_3:-1255643 None:intergenic
GTTATAGAAGATGACAGAGT+GGG 0.574813 3_3:+1255583 Msa0437480:CDS
GCAGATAGACGCCCTTGAAG+AGG 0.576782 3_3:+1254899 Msa0437480:intron
ATAGACGCCCTTGAAGAGGA+TGG 0.578976 3_3:+1254903 Msa0437480:CDS
TACCATGAAAGAGAAGTAGC+AGG 0.579370 3_3:+1256272 Msa0437480:CDS
ACGCCCTTGAAGAGGATGGA+AGG 0.580659 3_3:+1254907 Msa0437480:CDS
AATGCTCAGGAATGGATACA+TGG 0.580865 3_3:+1253259 Msa0437480:intron
GATATAGCAATAGAACTAGT+GGG 0.582747 3_3:+1253702 Msa0437480:CDS
AAATATACCTCATTGTGGAA+TGG 0.585498 3_3:-1253324 None:intergenic
GACCTTACACCTTCATCCAC+AGG 0.589301 3_3:+1253806 Msa0437480:CDS
TCTTGACACCAAAGGAATGG+TGG 0.594626 3_3:+1255561 Msa0437480:CDS
CAATCTCCAAGAGAAGTCAT+GGG 0.596018 3_3:+1252600 Msa0437480:CDS
GAACAGAATCATGACATTGG+AGG 0.596567 3_3:+1252477 Msa0437480:CDS
CTAGAACAGAATCATGACAT+TGG 0.599604 3_3:+1252474 Msa0437480:CDS
ATAGAGGATGCACGAGAGTG+AGG 0.601172 3_3:-1252107 None:intergenic
TTCATGGTAGAACTCCTCGA+TGG 0.601727 3_3:-1256258 None:intergenic
AAATCTCCAATATCATGAGT+AGG 0.603660 3_3:-1256299 None:intergenic
GGAGACATATCGAGACTCAT+GGG 0.605682 3_3:+1257571 Msa0437480:CDS
TAAGTATTTCAACATGGCCA+GGG 0.607233 3_3:-1252674 None:intergenic
AGAACTAGTGGGAATAGCAA+AGG 0.607437 3_3:+1253713 Msa0437480:CDS
TCTCTTGATACTATAACTGA+GGG 0.608259 3_3:+1253756 Msa0437480:CDS
AAAAGTATTGCCATCATGGG+AGG 0.610259 3_3:+1256223 Msa0437480:CDS
TTGGTTCGTCTCGGAAACCA+TGG 0.616433 3_3:-1252364 None:intergenic
GAGATGGAGAAAGTAAAGGG+TGG 0.617386 3_3:-1255627 None:intergenic
AGTGAAGTAAGGACTTTGAA+GGG 0.617403 3_3:-1257618 None:intergenic
TGGTTGAGCGTAATGACCAG+TGG 0.620721 3_3:-1252883 None:intergenic
ATATGTCTCCAAGTTAACAA+TGG 0.636025 3_3:-1257558 None:intergenic
GACAAATATGGTGAGAATGT+AGG 0.639510 3_3:+1257479 Msa0437480:CDS
CCAAGAAAGGTAGAGACATG+AGG 0.642980 3_3:+1252646 Msa0437480:CDS
AGGGATATAGTTGAAATGAG+GGG 0.658982 3_3:-1252073 None:intergenic
AGACTCATGGGATGATGATG+AGG 0.660730 3_3:+1257583 Msa0437480:CDS
GATACATAAGTATTTCAACA+TGG 0.661901 3_3:-1252680 None:intergenic
ATAGCAAATATACCTCATTG+TGG 0.662065 3_3:-1253329 None:intergenic
TCCAGAACCATTCCACAATG+AGG 0.662680 3_3:+1253317 Msa0437480:CDS
ACTCTATTGTGTATTGTACA+GGG 0.671646 3_3:+1254964 Msa0437480:CDS
TCTTTGAGTCCCAAGCAATG+TGG 0.679786 3_3:+1256177 Msa0437480:CDS
GGTTATAGAAGATGACAGAG+TGG 0.685485 3_3:+1255582 Msa0437480:CDS
TGATGATGAGGTGCTCCAAG+AGG 0.686965 3_3:+1257595 Msa0437480:CDS
AGAAAGGTAGAGACATGAGG+AGG 0.707282 3_3:+1252649 Msa0437480:CDS
ATCATGACATTGGAGGACAA+TGG 0.715553 3_3:+1252484 Msa0437480:CDS
TTATAGAAGATGACAGAGTG+GGG 0.721299 3_3:+1255584 Msa0437480:CDS
AATCTCCAAGAGAAGTCATG+GGG 0.726188 3_3:+1252601 Msa0437480:CDS
GGAAATGATGAAATCCATCG+AGG 0.746562 3_3:+1256244 Msa0437480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATATATTTTAAATT+TGG - chr3_3:1257674-1257693 None:intergenic 0.0%
!! AATATAAAATTAACAAAATC+TGG + chr3_3:1254248-1254267 Msa0437480:intron 10.0%
!!! TTTTATTAAATAAAGTAGTT+GGG + chr3_3:1254560-1254579 Msa0437480:intron 10.0%
!! ATGATATTTGAATAATAATT+TGG + chr3_3:1254693-1254712 Msa0437480:intron 10.0%
!! TGATATTTGAATAATAATTT+GGG + chr3_3:1254694-1254713 Msa0437480:intron 10.0%
!! TAAGAAAAATGTATAAATAT+AGG + chr3_3:1255290-1255309 Msa0437480:intron 10.0%
!! AAGAAAAATGTATAAATATA+GGG + chr3_3:1255291-1255310 Msa0437480:intron 10.0%
!! ATTATTAATTAGAGTTATAA+AGG + chr3_3:1255350-1255369 Msa0437480:intron 10.0%
!! TTATTAATTAGAGTTATAAA+GGG + chr3_3:1255351-1255370 Msa0437480:intron 10.0%
!! AAAAAAAATAAACAAAATCT+TGG + chr3_3:1256332-1256351 Msa0437480:intron 10.0%
!!! TAAGAAAATATATTTTTCTA+TGG - chr3_3:1256600-1256619 None:intergenic 10.0%
!!! TTTTTTACTATTTTGATAAA+AGG - chr3_3:1256671-1256690 None:intergenic 10.0%
!! TATGATGATAAAAATATAGA+AGG + chr3_3:1252510-1252529 Msa0437480:CDS 15.0%
!!! ATACAAGACTTTTATTTATA+TGG + chr3_3:1253099-1253118 Msa0437480:intron 15.0%
!!! ATTTTCTCATAATAAGTAAA+GGG + chr3_3:1253164-1253183 Msa0437480:intron 15.0%
!! ATAATTATATATTAATGCTC+AGG + chr3_3:1253246-1253265 Msa0437480:intron 15.0%
!! TCTATAATACATGTAAATAA+TGG + chr3_3:1253563-1253582 Msa0437480:intron 15.0%
!! AATTATAGAGTATACTAATA+TGG + chr3_3:1253954-1253973 Msa0437480:intron 15.0%
!! ATTATAGAGTATACTAATAT+GGG + chr3_3:1253955-1253974 Msa0437480:intron 15.0%
!!! TAGAAGTAAATTTTTTTGTA+GGG - chr3_3:1254058-1254077 None:intergenic 15.0%
!!! TTAGAAGTAAATTTTTTTGT+AGG - chr3_3:1254059-1254078 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+GGG - chr3_3:1254118-1254137 None:intergenic 15.0%
!! AATTAAACAAATTTGAATTG+AGG + chr3_3:1254374-1254393 Msa0437480:intron 15.0%
!! AGAACTATTAAAATTAAGTA+AGG + chr3_3:1254443-1254462 Msa0437480:intron 15.0%
!!! CTTTTATTAAATAAAGTAGT+TGG + chr3_3:1254559-1254578 Msa0437480:intron 15.0%
!! AGAAAAATGTATAAATATAG+GGG + chr3_3:1255292-1255311 Msa0437480:intron 15.0%
!! TATTAATTAGAGTTATAAAG+GGG + chr3_3:1255352-1255371 Msa0437480:intron 15.0%
!! CAATTGAAAAATTAGTTATA+AGG + chr3_3:1255695-1255714 Msa0437480:intron 15.0%
!! ACACTTCTAATTAAAAATAT+GGG + chr3_3:1255786-1255805 Msa0437480:intron 15.0%
!!! TTTTTAACAAAACAATATCT+TGG + chr3_3:1256363-1256382 Msa0437480:intron 15.0%
!! GTGCATATTATAAAATTTAA+TGG - chr3_3:1256392-1256411 None:intergenic 15.0%
!! AAAATTCTTAAAATGTCATA+AGG + chr3_3:1256687-1256706 Msa0437480:intron 15.0%
!! AAATTCTTAAAATGTCATAA+GGG + chr3_3:1256688-1256707 Msa0437480:intron 15.0%
!! TGACAATAAAAAACTATTAA+TGG - chr3_3:1256717-1256736 None:intergenic 15.0%
!! TTCATCTAAAAATACTTATT+TGG + chr3_3:1256854-1256873 Msa0437480:intron 15.0%
!! TCATCTAAAAATACTTATTT+GGG + chr3_3:1256855-1256874 Msa0437480:intron 15.0%
!! AATATAATATCATACGAAAA+TGG + chr3_3:1257142-1257161 Msa0437480:intron 15.0%
!!! TTCATTTTTCCATAAATTAA+TGG - chr3_3:1257403-1257422 None:intergenic 15.0%
!! TAATTTATGGAAAAATGAAA+AGG + chr3_3:1257404-1257423 Msa0437480:intron 15.0%
!! AAAATGAAAGATGTTTGTAT+TGG - chr3_3:1252040-1252059 None:intergenic 20.0%
!!! ATCTAAAAGATTTTTGTGAA+TGG + chr3_3:1252700-1252719 Msa0437480:CDS 20.0%
!! TATCTCTAACATGAAATAAA+TGG - chr3_3:1252967-1252986 None:intergenic 20.0%
!! TGAATATGATATAAAGAAAC+AGG + chr3_3:1252987-1253006 Msa0437480:intron 20.0%
!! GAAAAAAATATACAAAGACT+TGG - chr3_3:1253125-1253144 None:intergenic 20.0%
!!! CATTTTCTCATAATAAGTAA+AGG + chr3_3:1253163-1253182 Msa0437480:intron 20.0%
!! AGAGATATAATTGTGATATA+TGG - chr3_3:1253446-1253465 None:intergenic 20.0%
!!! TAATACATGTAAATAATGGA+AGG + chr3_3:1253567-1253586 Msa0437480:intron 20.0%
!!! AATACATGTAAATAATGGAA+GGG + chr3_3:1253568-1253587 Msa0437480:intron 20.0%
!! TTTATTTATATAACAGGTTG+TGG + chr3_3:1253650-1253669 Msa0437480:intron 20.0%
!! ATTATAATTATCAATACCTG+TGG - chr3_3:1253825-1253844 None:intergenic 20.0%
!! ATTATATTAAGTGTGGTTTA+AGG + chr3_3:1253908-1253927 Msa0437480:intron 20.0%
!!! ATATGGGTTAAATATGTTTT+TGG + chr3_3:1253971-1253990 Msa0437480:intron 20.0%
!! AAACCTATGAAAATTAAGTA+AGG - chr3_3:1254029-1254048 None:intergenic 20.0%
!! GTTCAAAAATTTAAGAGTTT+AGG - chr3_3:1254119-1254138 None:intergenic 20.0%
!! CAGAAGAAAAAAAAACTTAA+GGG + chr3_3:1254415-1254434 Msa0437480:intron 20.0%
!! ATTGAGATAAATAATGCATA+AGG + chr3_3:1254586-1254605 Msa0437480:intron 20.0%
!! ACATTATATGAGTATTTGAA+AGG + chr3_3:1254783-1254802 Msa0437480:intron 20.0%
!! TATATAGTAACGTGTTATAT+TGG + chr3_3:1254868-1254887 Msa0437480:intron 20.0%
!! AAAAGTGGAATATATTGAAT+TGG + chr3_3:1255376-1255395 Msa0437480:intron 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr3_3:1255315-1255334 Msa0437480:intron 20.0%
!!! TGTTTTTGAAATTCATCAAT+TGG + chr3_3:1255506-1255525 Msa0437480:intron 20.0%
!!! TTAGGTTAATTACCTTTTTA+GGG - chr3_3:1255669-1255688 None:intergenic 20.0%
!!! TTTAGGTTAATTACCTTTTT+AGG - chr3_3:1255670-1255689 None:intergenic 20.0%
!!! ATTTTTCAATTGCTGATTTT+AGG - chr3_3:1255687-1255706 None:intergenic 20.0%
!! GACACTTCTAATTAAAAATA+TGG + chr3_3:1255785-1255804 Msa0437480:intron 20.0%
!!! ACATTTGATATACATACTTT+TGG - chr3_3:1256111-1256130 None:intergenic 20.0%
!!! ATTTGTTAGATTTCAACTAA+TGG + chr3_3:1256503-1256522 Msa0437480:intron 20.0%
!! TTTGTTAGATTTCAACTAAT+GGG + chr3_3:1256504-1256523 Msa0437480:intron 20.0%
!! CATCTAAAAATACTTATTTG+GGG + chr3_3:1256856-1256875 Msa0437480:intron 20.0%
!!! GAGAATGAACAATTTTAAAA+GGG - chr3_3:1256929-1256948 None:intergenic 20.0%
!!! AGAGAATGAACAATTTTAAA+AGG - chr3_3:1256930-1256949 None:intergenic 20.0%
!! ATACGAAAATGGTATTATTT+GGG + chr3_3:1257153-1257172 Msa0437480:intron 20.0%
!! AATTATCTGATTGTAATATG+AGG + chr3_3:1257281-1257300 Msa0437480:intron 20.0%
! TAAGAAAAATGAGGATATAG+AGG - chr3_3:1252126-1252145 None:intergenic 25.0%
! AGGAGAAAATAAGAAAAATG+AGG - chr3_3:1252135-1252154 None:intergenic 25.0%
! GAAAAGAAAGAAAATAGAAG+AGG - chr3_3:1252155-1252174 None:intergenic 25.0%
! CATTTACATATTTGTAACCA+TGG + chr3_3:1252347-1252366 Msa0437480:exon 25.0%
! GATACATAAGTATTTCAACA+TGG - chr3_3:1252683-1252702 None:intergenic 25.0%
!! AAAGATTTTTGTGAATGGTT+TGG + chr3_3:1252705-1252724 Msa0437480:CDS 25.0%
!! AAGATTTTTGTGAATGGTTT+GGG + chr3_3:1252706-1252725 Msa0437480:CDS 25.0%
! AATACTAGGGTTAATTATGT+TGG + chr3_3:1252750-1252769 Msa0437480:CDS 25.0%
! TTTGTGGAAATAATTTGAAG+TGG + chr3_3:1252793-1252812 Msa0437480:CDS 25.0%
! GAAAATCATGTTACCTTTAA+TGG - chr3_3:1252919-1252938 None:intergenic 25.0%
! ATATAAAGAAACAGGAAGAA+AGG + chr3_3:1252995-1253014 Msa0437480:intron 25.0%
! TTTATAATGTAATACTCCAG+AGG + chr3_3:1253021-1253040 Msa0437480:intron 25.0%
! TATATATTAATGCTCAGGAA+TGG + chr3_3:1253251-1253270 Msa0437480:intron 25.0%
! ATTTACATGTATTATAGAGC+AGG - chr3_3:1253561-1253580 None:intergenic 25.0%
!!! TAAAAGTTCCCAGTTTTATA+GGG - chr3_3:1253998-1254017 None:intergenic 25.0%
!!! TTAAAAGTTCCCAGTTTTAT+AGG - chr3_3:1253999-1254018 None:intergenic 25.0%
!! AGTCCTTACTTAATTTTCAT+AGG + chr3_3:1254023-1254042 Msa0437480:intron 25.0%
!! AAACAAACTTTGTTGTAACA+AGG - chr3_3:1254089-1254108 None:intergenic 25.0%
!!! TTTATGACAATTTTTTGCAG+AGG + chr3_3:1254286-1254305 Msa0437480:intron 25.0%
! TAAACAAATTTGAATTGAGG+AGG + chr3_3:1254377-1254396 Msa0437480:intron 25.0%
! AAACAAATTTGAATTGAGGA+GGG + chr3_3:1254378-1254397 Msa0437480:intron 25.0%
! GCAGAAGAAAAAAAAACTTA+AGG + chr3_3:1254414-1254433 Msa0437480:intron 25.0%
! AAGTAAGGACTAAACTTAAA+AGG + chr3_3:1254458-1254477 Msa0437480:intron 25.0%
!! TTAAAAGGTCCCAATTTTAT+AGG + chr3_3:1254473-1254492 Msa0437480:intron 25.0%
!! TAAAAGGTCCCAATTTTATA+GGG + chr3_3:1254474-1254493 Msa0437480:intron 25.0%
!!! TTTTTGGTCCCTATAAAATT+GGG - chr3_3:1254485-1254504 None:intergenic 25.0%
!! AGTAGGGTTAAATATGTTTT+TGG - chr3_3:1254501-1254520 None:intergenic 25.0%
! AAATATCATCTCTCTTTAAC+AGG + chr3_3:1254840-1254859 Msa0437480:intron 25.0%
! AATATCATCTCTCTTTAACA+GGG + chr3_3:1254841-1254860 Msa0437480:intron 25.0%
! GTCATAGAGAAATTCTAATA+TGG + chr3_3:1254990-1255009 Msa0437480:intron 25.0%
! GTATTTGGTCACAAAAAAAA+AGG + chr3_3:1255032-1255051 Msa0437480:intron 25.0%
! CATAACTACTTTACTCTAAA+AGG - chr3_3:1255215-1255234 None:intergenic 25.0%
! CTTCATACCGAATATATAAA+TGG + chr3_3:1255733-1255752 Msa0437480:intron 25.0%
! TCAGAAGCCATTTATATATT+CGG - chr3_3:1255743-1255762 None:intergenic 25.0%
!!! TGCATACTTTTTAGTTTCAA+TGG + chr3_3:1256080-1256099 Msa0437480:intron 25.0%
! AAATCCCACTAATTTGAAAA+GGG - chr3_3:1256487-1256506 None:intergenic 25.0%
! TTGTTAGATTTCAACTAATG+GGG + chr3_3:1256505-1256524 Msa0437480:intron 25.0%
! AAAGATTCAAAACAAATCGA+GGG - chr3_3:1256776-1256795 None:intergenic 25.0%
! AAAAGATTCAAAACAAATCG+AGG - chr3_3:1256777-1256796 None:intergenic 25.0%
! TAAAAATACTTATTTGGGGA+AGG + chr3_3:1256860-1256879 Msa0437480:intron 25.0%
! CATACGAAAATGGTATTATT+TGG + chr3_3:1257152-1257171 Msa0437480:intron 25.0%
! GTTAACAATGGAGTTAATTA+TGG - chr3_3:1257549-1257568 None:intergenic 25.0%
! AATTAACTCCATTGTTAACT+TGG + chr3_3:1257550-1257569 Msa0437480:CDS 25.0%
!!! CATATTTTTTGTTCTTGCAT+GGG - chr3_3:1257732-1257751 None:intergenic 25.0%
! GAAAGATGTTTGTATTGGTA+AGG - chr3_3:1252035-1252054 None:intergenic 30.0%
AAGGGATATAGTTGAAATGA+GGG - chr3_3:1252077-1252096 None:intergenic 30.0%
TAAGGGATATAGTTGAAATG+AGG - chr3_3:1252078-1252097 None:intergenic 30.0%
GATTAGGTCAGAGAAAATAA+GGG - chr3_3:1252179-1252198 None:intergenic 30.0%
TTTAAGCTACAAATAGAGAG+TGG - chr3_3:1252296-1252315 None:intergenic 30.0%
GAAAAGAGTTTCTACCTAAA+GGG - chr3_3:1252542-1252561 None:intergenic 30.0%
AGAAAAGAGTTTCTACCTAA+AGG - chr3_3:1252543-1252562 None:intergenic 30.0%
! TTTCCATTTTCTACCAAGAA+AGG + chr3_3:1252633-1252652 Msa0437480:CDS 30.0%
AGATGATAAGGTTCAATACT+AGG + chr3_3:1252736-1252755 Msa0437480:CDS 30.0%
GATGATAAGGTTCAATACTA+GGG + chr3_3:1252737-1252756 Msa0437480:CDS 30.0%
ATCATGTTACCTTTAATGGA+TGG - chr3_3:1252915-1252934 None:intergenic 30.0%
TAGCAAAACCCATTAACTAT+TGG + chr3_3:1253061-1253080 Msa0437480:intron 30.0%
TTCTTGCACCAATAGTTAAT+GGG - chr3_3:1253072-1253091 None:intergenic 30.0%
TTTCTTGCACCAATAGTTAA+TGG - chr3_3:1253073-1253092 None:intergenic 30.0%
AAATGCATAGTCACATTTAC+AGG + chr3_3:1253292-1253311 Msa0437480:CDS 30.0%
AAATATACCTCATTGTGGAA+TGG - chr3_3:1253327-1253346 None:intergenic 30.0%
ATAGCAAATATACCTCATTG+TGG - chr3_3:1253332-1253351 None:intergenic 30.0%
ATCTCTATAAATTATCCACG+TGG + chr3_3:1253489-1253508 Msa0437480:intron 30.0%
ATTTATATAACAGGTTGTGG+TGG + chr3_3:1253653-1253672 Msa0437480:intron 30.0%
!! CTAGTTCTATTGCTATATCT+TGG - chr3_3:1253701-1253720 None:intergenic 30.0%
AGATATAGCAATAGAACTAG+TGG + chr3_3:1253701-1253720 Msa0437480:CDS 30.0%
GATATAGCAATAGAACTAGT+GGG + chr3_3:1253702-1253721 Msa0437480:CDS 30.0%
ATCTCTTGATACTATAACTG+AGG + chr3_3:1253755-1253774 Msa0437480:CDS 30.0%
TCTCTTGATACTATAACTGA+GGG + chr3_3:1253756-1253775 Msa0437480:CDS 30.0%
CTGTCTCATTATATTAAGTG+TGG + chr3_3:1253901-1253920 Msa0437480:intron 30.0%
! ATTAAGTGTGGTTTAAGGTT+AGG + chr3_3:1253913-1253932 Msa0437480:intron 30.0%
!! TTTTTGGTCCCTATAAAACT+GGG + chr3_3:1253987-1254006 Msa0437480:intron 30.0%
! CATGTTTAGAACACTATGAA+AGG + chr3_3:1254152-1254171 Msa0437480:intron 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG - chr3_3:1254486-1254505 None:intergenic 30.0%
GAGTTTGTCATCATAATTAG+AGG + chr3_3:1254669-1254688 Msa0437480:intron 30.0%
ATATCATCTCTCTTTAACAG+GGG + chr3_3:1254842-1254861 Msa0437480:intron 30.0%
ACTCTATTGTGTATTGTACA+GGG + chr3_3:1254964-1254983 Msa0437480:CDS 30.0%
AGAAATTCTAATATGGTCAC+AGG + chr3_3:1254997-1255016 Msa0437480:intron 30.0%
AGGACCAAAGAAATAGTATT+TGG + chr3_3:1255017-1255036 Msa0437480:intron 30.0%
! GTGACCAAATACTATTTCTT+TGG - chr3_3:1255024-1255043 None:intergenic 30.0%
ATAAGTGTGAAATGAGTCAA+GGG - chr3_3:1255270-1255289 None:intergenic 30.0%
AATAAGTGTGAAATGAGTCA+AGG - chr3_3:1255271-1255290 None:intergenic 30.0%
TGTATAAATATAGGGGAAAG+TGG + chr3_3:1255299-1255318 Msa0437480:intron 30.0%
AGTAAATGACTCAGTTAATC+CGG + chr3_3:1255459-1255478 Msa0437480:intron 30.0%
ATGGAGCGAGTAATAATTAA+AGG + chr3_3:1255483-1255502 Msa0437480:intron 30.0%
!! TCATCAATTGGTTGTTTTGT+AGG + chr3_3:1255518-1255537 Msa0437480:intron 30.0%
TAAGAGATGGAGAAAGTAAA+GGG - chr3_3:1255633-1255652 None:intergenic 30.0%
!! TCTCCATCTCTTACTTTTAT+AGG + chr3_3:1255640-1255659 Msa0437480:CDS 30.0%
ATGCCTATAAAAGTAAGAGA+TGG - chr3_3:1255646-1255665 None:intergenic 30.0%
! TTTTATAGGCATCCCTAAAA+AGG + chr3_3:1255654-1255673 Msa0437480:CDS 30.0%
! TTTTTCTCAAATAGACGTGT+CGG + chr3_3:1255875-1255894 Msa0437480:intron 30.0%
! TCATATGTGTTAGCGTTTTA+TGG + chr3_3:1255913-1255932 Msa0437480:intron 30.0%
GTTTGTATATGAGTATGAGT+AGG + chr3_3:1256014-1256033 Msa0437480:intron 30.0%
! TAGGTACTTGGTAGATTTTA+AGG + chr3_3:1256033-1256052 Msa0437480:intron 30.0%
! ATGAGTGTACTACAGATTTT+AGG + chr3_3:1256146-1256165 Msa0437480:intron 30.0%
!! GAAAAAAGTATTGCCATCAT+GGG + chr3_3:1256220-1256239 Msa0437480:CDS 30.0%
AAATCTCCAATATCATGAGT+AGG - chr3_3:1256302-1256321 None:intergenic 30.0%
! TCATGATATTGGAGATTTTG+AGG + chr3_3:1256304-1256323 Msa0437480:CDS 30.0%
TGCACCTATTTATACATAGA+TGG + chr3_3:1256407-1256426 Msa0437480:intron 30.0%
GAAGCCATCTATGTATAAAT+AGG - chr3_3:1256414-1256433 None:intergenic 30.0%
CAAATCCCACTAATTTGAAA+AGG - chr3_3:1256488-1256507 None:intergenic 30.0%
TGTTAGATTTCAACTAATGG+GGG + chr3_3:1256506-1256525 Msa0437480:intron 30.0%
! TTGTCATGTCTAACTTTTCT+AGG + chr3_3:1256731-1256750 Msa0437480:intron 30.0%
AAGATTCAAAACAAATCGAG+GGG - chr3_3:1256775-1256794 None:intergenic 30.0%
TGTTCATTCTCTTATCTCAA+CGG + chr3_3:1256938-1256957 Msa0437480:intron 30.0%
GTGCATGATTGAATAAGATA+TGG + chr3_3:1257318-1257337 Msa0437480:intron 30.0%
TTGAATAAGATATGGTCCAT+TGG + chr3_3:1257326-1257345 Msa0437480:intron 30.0%
TAGTCCTACATCAGAATTAT+TGG + chr3_3:1257351-1257370 Msa0437480:intron 30.0%
TACACCAATAATTCTGATGT+AGG - chr3_3:1257358-1257377 None:intergenic 30.0%
TCCATAAATTAATGGAGCTA+CGG - chr3_3:1257395-1257414 None:intergenic 30.0%
TTGCAGTATTGTGACAAATA+TGG + chr3_3:1257467-1257486 Msa0437480:intron 30.0%
! ACTTTTCTCCATTCTTGTAA+TGG - chr3_3:1257512-1257531 None:intergenic 30.0%
ATATGTCTCCAAGTTAACAA+TGG - chr3_3:1257561-1257580 None:intergenic 30.0%
!!! GCATATTTTTTGTTCTTGCA+TGG - chr3_3:1257733-1257752 None:intergenic 30.0%
!!! GAAACAACTCTTTCGTTTTT+TGG - chr3_3:1257861-1257880 None:intergenic 30.0%
TATAGTTGAAATGAGGGGAT+AGG - chr3_3:1252071-1252090 None:intergenic 35.0%
AGGGATATAGTTGAAATGAG+GGG - chr3_3:1252076-1252095 None:intergenic 35.0%
GGATTAGGTCAGAGAAAATA+AGG - chr3_3:1252180-1252199 None:intergenic 35.0%
TTACACACACATTCTTCGAT+TGG - chr3_3:1252386-1252405 None:intergenic 35.0%
TCGAAGAATGTGTGTGTAAT+CGG + chr3_3:1252387-1252406 Msa0437480:CDS 35.0%
GCAAGAGAGATAAGAAAAGA+AGG + chr3_3:1252435-1252454 Msa0437480:CDS 35.0%
CTAGAACAGAATCATGACAT+TGG + chr3_3:1252474-1252493 Msa0437480:CDS 35.0%
CTACCTTTCTTGGTAGAAAA+TGG - chr3_3:1252639-1252658 None:intergenic 35.0%
TAAGTATTTCAACATGGCCA+GGG - chr3_3:1252677-1252696 None:intergenic 35.0%
ATAAGTATTTCAACATGGCC+AGG - chr3_3:1252678-1252697 None:intergenic 35.0%
TTGGGTTAAGAGAGATGATA+AGG + chr3_3:1252724-1252743 Msa0437480:CDS 35.0%
! GTTGGAATGCTTGATGATTA+TGG + chr3_3:1252768-1252787 Msa0437480:CDS 35.0%
! CTTGATGATTATGGTGTTTG+TGG + chr3_3:1252777-1252796 Msa0437480:CDS 35.0%
GATTGTTAGAAGCAAAGAGA+AGG + chr3_3:1252815-1252834 Msa0437480:CDS 35.0%
CAAAGAGAAGGATTGTGATA+AGG + chr3_3:1252827-1252846 Msa0437480:CDS 35.0%
!! CCTTTAATGGATGGCAATTT+TGG - chr3_3:1252906-1252925 None:intergenic 35.0%
CCAAAATTGCCATCCATTAA+AGG + chr3_3:1252903-1252922 Msa0437480:CDS 35.0%
TATGAGAAAATGTCGCACAT+CGG - chr3_3:1253155-1253174 None:intergenic 35.0%
! TCTAATTACATTTTGCCACG+TGG - chr3_3:1253507-1253526 None:intergenic 35.0%
!! ACAAAAGCTTTGGAAGCTTT+AGG + chr3_3:1253594-1253613 Msa0437480:intron 35.0%
!! CAAAAGCTTTGGAAGCTTTA+GGG + chr3_3:1253595-1253614 Msa0437480:intron 35.0%
TTATCAATACCTGTGGATGA+AGG - chr3_3:1253818-1253837 None:intergenic 35.0%
!!! GTTTTTGGTCCCTATAAAAC+TGG + chr3_3:1253986-1254005 Msa0437480:intron 35.0%
! GGAAGGGTAATTTTCATAGA+TGG + chr3_3:1254924-1254943 Msa0437480:CDS 35.0%
GACTCTATTGTGTATTGTAC+AGG + chr3_3:1254963-1254982 Msa0437480:CDS 35.0%
! CTTTTGACAGCTTGATTTAC+TGG - chr3_3:1255064-1255083 None:intergenic 35.0%
AGTCAAGGGCTCAATTAATT+CGG - chr3_3:1255256-1255275 None:intergenic 35.0%
GAGTTATAAAGGGGAAAAAG+TGG + chr3_3:1255361-1255380 Msa0437480:intron 35.0%
GTAAATGACTCAGTTAATCC+GGG + chr3_3:1255460-1255479 Msa0437480:intron 35.0%
!! TTCCTTTGGTGTCAAGAAAA+GGG - chr3_3:1255558-1255577 None:intergenic 35.0%
!! ATTCCTTTGGTGTCAAGAAA+AGG - chr3_3:1255559-1255578 None:intergenic 35.0%
! TTTTCTTGACACCAAAGGAA+TGG + chr3_3:1255558-1255577 Msa0437480:CDS 35.0%
TTCTATAACCACCATTCCTT+TGG - chr3_3:1255572-1255591 None:intergenic 35.0%
GTTATAGAAGATGACAGAGT+GGG + chr3_3:1255583-1255602 Msa0437480:CDS 35.0%
TTATAGAAGATGACAGAGTG+GGG + chr3_3:1255584-1255603 Msa0437480:CDS 35.0%
GTAAGAGATGGAGAAAGTAA+AGG - chr3_3:1255634-1255653 None:intergenic 35.0%
TATGAGTATGAGTAGGTACT+TGG + chr3_3:1256021-1256040 Msa0437480:intron 35.0%
!! GGAAAAAAGTATTGCCATCA+TGG + chr3_3:1256219-1256238 Msa0437480:CDS 35.0%
! ACACTCCCTTTTCAAATTAG+TGG + chr3_3:1256479-1256498 Msa0437480:intron 35.0%
! CACTCCCTTTTCAAATTAGT+GGG + chr3_3:1256480-1256499 Msa0437480:intron 35.0%
CTATGGTTGATTGTGCTTAA+TGG - chr3_3:1256583-1256602 None:intergenic 35.0%
AAATACTTATTTGGGGAAGG+TGG + chr3_3:1256863-1256882 Msa0437480:intron 35.0%
!!! CACACTAGCACTTTTAAGAT+TGG - chr3_3:1257053-1257072 None:intergenic 35.0%
AGTTAACTCACGCTGAATTA+AGG + chr3_3:1257103-1257122 Msa0437480:intron 35.0%
!! TACATCTGATCTTGATTTGG+CGG - chr3_3:1257213-1257232 None:intergenic 35.0%
GCATACATCTGATCTTGATT+TGG - chr3_3:1257216-1257235 None:intergenic 35.0%
CCATAAATTAATGGAGCTAC+GGG - chr3_3:1257394-1257413 None:intergenic 35.0%
GACAAATATGGTGAGAATGT+AGG + chr3_3:1257479-1257498 Msa0437480:CDS 35.0%
TTCTCCATTCTTGTAATGGT+GGG - chr3_3:1257508-1257527 None:intergenic 35.0%
TTTCTCCATTCTTGTAATGG+TGG - chr3_3:1257509-1257528 None:intergenic 35.0%
AGTGAAGTAAGGACTTTGAA+GGG - chr3_3:1257621-1257640 None:intergenic 35.0%
! GAGTGAGGTTGTATTGGTAA+GGG - chr3_3:1252095-1252114 None:intergenic 40.0%
! AGAGTGAGGTTGTATTGGTA+AGG - chr3_3:1252096-1252115 None:intergenic 40.0%
!! ATTCTTCGATTGGTTCGTCT+CGG - chr3_3:1252376-1252395 None:intergenic 40.0%
TTATCTCTCTTGCTGCTACT+AGG - chr3_3:1252428-1252447 None:intergenic 40.0%
GAACAGAATCATGACATTGG+AGG + chr3_3:1252477-1252496 Msa0437480:CDS 40.0%
ATCATGACATTGGAGGACAA+TGG + chr3_3:1252484-1252503 Msa0437480:CDS 40.0%
ATAGAAGGTGAAGACCCTTT+AGG + chr3_3:1252525-1252544 Msa0437480:CDS 40.0%
ACAATCTCCAAGAGAAGTCA+TGG + chr3_3:1252599-1252618 Msa0437480:CDS 40.0%
CAATCTCCAAGAGAAGTCAT+GGG + chr3_3:1252600-1252619 Msa0437480:CDS 40.0%
AATCTCCAAGAGAAGTCATG+GGG + chr3_3:1252601-1252620 Msa0437480:CDS 40.0%
GAAGGATTGTGATAAGGTTG+TGG + chr3_3:1252833-1252852 Msa0437480:CDS 40.0%
TTGTGATAAGGTTGTGGAAG+AGG + chr3_3:1252839-1252858 Msa0437480:CDS 40.0%
AATGCTCAGGAATGGATACA+TGG + chr3_3:1253259-1253278 Msa0437480:intron 40.0%
GTATTATAGAGCAGGACTGT+CGG - chr3_3:1253553-1253572 None:intergenic 40.0%
TATATAACAGGTTGTGGTGG+TGG + chr3_3:1253656-1253675 Msa0437480:intron 40.0%
GTGGTTGGAAATTCCTATAG+TGG + chr3_3:1253675-1253694 Msa0437480:CDS 40.0%
TGCTATATCTTGGCCACTAT+AGG - chr3_3:1253691-1253710 None:intergenic 40.0%
AGAACTAGTGGGAATAGCAA+AGG + chr3_3:1253713-1253732 Msa0437480:CDS 40.0%
GTCAAGGGCTCAATTAATTC+GGG - chr3_3:1255255-1255274 None:intergenic 40.0%
AATTATTACTCGCTCCATCC+CGG - chr3_3:1255481-1255500 None:intergenic 40.0%
GTCAAGAAAAGGGAAGCTAT+AGG - chr3_3:1255548-1255567 None:intergenic 40.0%
! TTCCCTTTTCTTGACACCAA+AGG + chr3_3:1255553-1255572 Msa0437480:CDS 40.0%
GGTTATAGAAGATGACAGAG+TGG + chr3_3:1255582-1255601 Msa0437480:CDS 40.0%
! TGGAAAGTGTGCTCATACAA+AGG - chr3_3:1255610-1255629 None:intergenic 40.0%
TTGCTTGGGACTCAAAGAAA+GGG - chr3_3:1256175-1256194 None:intergenic 40.0%
ATTGCTTGGGACTCAAAGAA+AGG - chr3_3:1256176-1256195 None:intergenic 40.0%
TTGAGCTATCCACATTGCTT+GGG - chr3_3:1256189-1256208 None:intergenic 40.0%
ATTGAGCTATCCACATTGCT+TGG - chr3_3:1256190-1256209 None:intergenic 40.0%
TGGATAGCTCAATTGCTTTC+TGG + chr3_3:1256197-1256216 Msa0437480:CDS 40.0%
GGATAGCTCAATTGCTTTCT+GGG + chr3_3:1256198-1256217 Msa0437480:CDS 40.0%
!! AAAAGTATTGCCATCATGGG+AGG + chr3_3:1256223-1256242 Msa0437480:CDS 40.0%
TTCATCATTTCCTCCCATGA+TGG - chr3_3:1256236-1256255 None:intergenic 40.0%
GGAAATGATGAAATCCATCG+AGG + chr3_3:1256244-1256263 Msa0437480:CDS 40.0%
TACCATGAAAGAGAAGTAGC+AGG + chr3_3:1256272-1256291 Msa0437480:CDS 40.0%
GGCATTCCTACTCATGATAT+TGG + chr3_3:1256293-1256312 Msa0437480:CDS 40.0%
AACGGAAGTTAACTCACGTT+CGG + chr3_3:1256956-1256975 Msa0437480:intron 40.0%
CAATCATGCACTTGTAGATC+TGG - chr3_3:1257309-1257328 None:intergenic 40.0%
TAAATTAATGGAGCTACGGG+TGG - chr3_3:1257391-1257410 None:intergenic 40.0%
CCCGTAGCTCCATTAATTTA+TGG + chr3_3:1257391-1257410 Msa0437480:intron 40.0%
GAGTGAAGTAAGGACTTTGA+AGG - chr3_3:1257622-1257641 None:intergenic 40.0%
AGTCCTTACTTCACTCAACT+TGG + chr3_3:1257626-1257645 Msa0437480:CDS 40.0%
! AGTCCAAGTTGAGTGAAGTA+AGG - chr3_3:1257632-1257651 None:intergenic 40.0%
AGAGAGAGATTGAGGGGATT+AGG - chr3_3:1252195-1252214 None:intergenic 45.0%
AGAGAGAGAGAGAGATTGAG+GGG - chr3_3:1252201-1252220 None:intergenic 45.0%
GAGAGAGAGAGAGAGATTGA+GGG - chr3_3:1252202-1252221 None:intergenic 45.0%
AGAGAGAGAGAGAGAGATTG+AGG - chr3_3:1252203-1252222 None:intergenic 45.0%
AATGTGTGTGTAATCGGTGC+TGG + chr3_3:1252393-1252412 Msa0437480:CDS 45.0%
CCTCATGTCTCTACCTTTCT+TGG - chr3_3:1252649-1252668 None:intergenic 45.0%
CCAAGAAAGGTAGAGACATG+AGG + chr3_3:1252646-1252665 Msa0437480:CDS 45.0%
AGAAAGGTAGAGACATGAGG+AGG + chr3_3:1252649-1252668 Msa0437480:CDS 45.0%
! GGAAGAGGTTTTTGATGCAG+TGG + chr3_3:1252854-1252873 Msa0437480:CDS 45.0%
TCCAGAACCATTCCACAATG+AGG + chr3_3:1253317-1253336 Msa0437480:CDS 45.0%
ACCTCATTGTGGAATGGTTC+TGG - chr3_3:1253321-1253340 None:intergenic 45.0%
! GGAAGGGCATACAAAAGCTT+TGG + chr3_3:1253584-1253603 Msa0437480:intron 45.0%
! TACCTGTGGATGAAGGTGTA+AGG - chr3_3:1253811-1253830 None:intergenic 45.0%
TACCCTTCCATCCTCTTCAA+GGG - chr3_3:1254913-1254932 None:intergenic 45.0%
TTACCCTTCCATCCTCTTCA+AGG - chr3_3:1254914-1254933 None:intergenic 45.0%
AGGGCTCAATTAATTCGGGA+GGG - chr3_3:1255251-1255270 None:intergenic 45.0%
AAGGGCTCAATTAATTCGGG+AGG - chr3_3:1255252-1255271 None:intergenic 45.0%
ATGACTCAGTTAATCCGGGA+TGG + chr3_3:1255464-1255483 Msa0437480:intron 45.0%
TCTTGACACCAAAGGAATGG+TGG + chr3_3:1255561-1255580 Msa0437480:CDS 45.0%
GAGATGGAGAAAGTAAAGGG+TGG - chr3_3:1255630-1255649 None:intergenic 45.0%
TCTTTGAGTCCCAAGCAATG+TGG + chr3_3:1256177-1256196 Msa0437480:CDS 45.0%
TTCATGGTAGAACTCCTCGA+TGG - chr3_3:1256261-1256280 None:intergenic 45.0%
! TGCCTGCTACTTCTCTTTCA+TGG - chr3_3:1256277-1256296 None:intergenic 45.0%
CTGATGTAGGACTAGACCAA+TGG - chr3_3:1257345-1257364 None:intergenic 45.0%
GACTCCCACCATTACAAGAA+TGG + chr3_3:1257501-1257520 Msa0437480:CDS 45.0%
TGGAGACATATCGAGACTCA+TGG + chr3_3:1257570-1257589 Msa0437480:CDS 45.0%
GGAGACATATCGAGACTCAT+GGG + chr3_3:1257571-1257590 Msa0437480:CDS 45.0%
! AGACTCATGGGATGATGATG+AGG + chr3_3:1257583-1257602 Msa0437480:CDS 45.0%
!!! ATTTTTTTTATTTATATAAC+AGG + chr3_3:1253644-1253663 Msa0437480:intron 5.0%
!! TTAATTAATAAATATTAGTA+GGG - chr3_3:1254517-1254536 None:intergenic 5.0%
!! TTTAATTAATAAATATTAGT+AGG - chr3_3:1254518-1254537 None:intergenic 5.0%
!!! ATTTTTTTTCTTTTTTTTAT+TGG + chr3_3:1254734-1254753 Msa0437480:intron 5.0%
GCACGAGAGTGAGGTTGTAT+TGG - chr3_3:1252101-1252120 None:intergenic 50.0%
ATAGAGGATGCACGAGAGTG+AGG - chr3_3:1252110-1252129 None:intergenic 50.0%
! TTGGTTCGTCTCGGAAACCA+TGG - chr3_3:1252367-1252386 None:intergenic 50.0%
GTGAACCCCATGACTTCTCT+TGG - chr3_3:1252609-1252628 None:intergenic 50.0%
TGGTTGAGCGTAATGACCAG+TGG - chr3_3:1252886-1252905 None:intergenic 50.0%
!! TAACAGGTTGTGGTGGTGGT+TGG + chr3_3:1253660-1253679 Msa0437480:intron 50.0%
GACCTTACACCTTCATCCAC+AGG + chr3_3:1253806-1253825 Msa0437480:CDS 50.0%
ATAGACGCCCTTGAAGAGGA+TGG + chr3_3:1254903-1254922 Msa0437480:CDS 50.0%
TGTCCAGTGATTTCGCTGTG+CGG + chr3_3:1255155-1255174 Msa0437480:intron 50.0%
! TGATGATGAGGTGCTCCAAG+AGG + chr3_3:1257595-1257614 Msa0437480:CDS 50.0%
! AAGGACTTTGAAGGGCCTCT+TGG - chr3_3:1257613-1257632 None:intergenic 50.0%
AGAGACATGAGGAGGTTCCC+TGG + chr3_3:1252657-1252676 Msa0437480:CDS 55.0%
GATGCAGTGGTTGTTGCCAC+TGG + chr3_3:1252867-1252886 Msa0437480:CDS 55.0%
GCAGATAGACGCCCTTGAAG+AGG + chr3_3:1254899-1254918 Msa0437480:intron 55.0%
ACGCCCTTGAAGAGGATGGA+AGG + chr3_3:1254907-1254926 Msa0437480:CDS 55.0%
CGCCCTTGAAGAGGATGGAA+GGG + chr3_3:1254908-1254927 Msa0437480:CDS 55.0%
AGTCCGCACAGCGAAATCAC+TGG - chr3_3:1255161-1255180 None:intergenic 55.0%
!! GTAATCGGTGCTGGACCAGC+AGG + chr3_3:1252402-1252421 Msa0437480:CDS 60.0%
CTTGCTGCTACTAGGCCTGC+TGG - chr3_3:1252420-1252439 None:intergenic 60.0%
AGCTAGCGACGCGTTACCTC+TGG - chr3_3:1253040-1253059 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 1252030 1257893 1252030 ID=Msa0437480;Name=Msa0437480
chr3_3 mRNA 1252030 1257893 1252030 ID=Msa0437480-mRNA-1;Parent=Msa0437480;Name=Msa0437480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=316|1|1|1|0.85|0.75|8|232|454
chr3_3 exon 1252030 1252262 1252030 ID=Msa0437480-mRNA-1:exon:63;Parent=Msa0437480-mRNA-1
chr3_3 exon 1252283 1252924 1252283 ID=Msa0437480-mRNA-1:exon:64;Parent=Msa0437480-mRNA-1
chr3_3 exon 1253268 1253338 1253268 ID=Msa0437480-mRNA-1:exon:65;Parent=Msa0437480-mRNA-1
chr3_3 exon 1253666 1253827 1253666 ID=Msa0437480-mRNA-1:exon:66;Parent=Msa0437480-mRNA-1
chr3_3 exon 1254903 1254985 1254903 ID=Msa0437480-mRNA-1:exon:67;Parent=Msa0437480-mRNA-1
chr3_3 exon 1255540 1255675 1255540 ID=Msa0437480-mRNA-1:exon:68;Parent=Msa0437480-mRNA-1
chr3_3 exon 1256161 1256325 1256161 ID=Msa0437480-mRNA-1:exon:69;Parent=Msa0437480-mRNA-1
chr3_3 exon 1257473 1257893 1257473 ID=Msa0437480-mRNA-1:exon:70;Parent=Msa0437480-mRNA-1
chr3_3 five_prime_UTR 1252030 1252262 1252030 ID=Msa0437480-mRNA-1:five_prime_utr;Parent=Msa0437480-mRNA-1
chr3_3 five_prime_UTR 1252283 1252365 1252283 ID=Msa0437480-mRNA-1:five_prime_utr;Parent=Msa0437480-mRNA-1
chr3_3 CDS 1252366 1252924 1252366 ID=Msa0437480-mRNA-1:cds;Parent=Msa0437480-mRNA-1
chr3_3 CDS 1253268 1253338 1253268 ID=Msa0437480-mRNA-1:cds;Parent=Msa0437480-mRNA-1
chr3_3 CDS 1253666 1253827 1253666 ID=Msa0437480-mRNA-1:cds;Parent=Msa0437480-mRNA-1
chr3_3 CDS 1254903 1254985 1254903 ID=Msa0437480-mRNA-1:cds;Parent=Msa0437480-mRNA-1
chr3_3 CDS 1255540 1255675 1255540 ID=Msa0437480-mRNA-1:cds;Parent=Msa0437480-mRNA-1
chr3_3 CDS 1256161 1256325 1256161 ID=Msa0437480-mRNA-1:cds;Parent=Msa0437480-mRNA-1
chr3_3 CDS 1257473 1257661 1257473 ID=Msa0437480-mRNA-1:cds;Parent=Msa0437480-mRNA-1
chr3_3 three_prime_UTR 1257662 1257893 1257662 ID=Msa0437480-mRNA-1:three_prime_utr;Parent=Msa0437480-mRNA-1
Gene Sequence

>Msa0437480

ATGGTTTCCGAGACGAACCAATCGAAGAATGTGTGTGTAATCGGTGCTGGACCAGCAGGCCTAGTAGCAGCAAGAGAGATAAGAAAAGAAGGTCACAAAGTAATTGTGCTAGAACAGAATCATGACATTGGAGGACAATGGTTATATGATGATAAAAATATAGAAGGTGAAGACCCTTTAGGTAGAAACTCTTTTCTAAAAGTTCATAGCAGTATCTATAACTCTTTAAGAACACAATCTCCAAGAGAAGTCATGGGGTTCACAGATTTTCCATTTTCTACCAAGAAAGGTAGAGACATGAGGAGGTTCCCTGGCCATGTTGAAATACTTATGTATCTAAAAGATTTTTGTGAATGGTTTGGGTTAAGAGAGATGATAAGGTTCAATACTAGGGTTAATTATGTTGGAATGCTTGATGATTATGGTGTTTGTGGAAATAATTTGAAGTGGATTGTTAGAAGCAAAGAGAAGGATTGTGATAAGGTTGTGGAAGAGGTTTTTGATGCAGTGGTTGTTGCCACTGGTCATTACGCTCAACCAAAATTGCCATCCATTAAAGGAATGGATACATGGAAAAGAAAACAAATGCATAGTCACATTTACAGGACTCCAGAACCATTCCACAATGAGGTTGTGGTGGTGGTTGGAAATTCCTATAGTGGCCAAGATATAGCAATAGAACTAGTGGGAATAGCAAAGGAAGTTCATATAAGTTCAAGATCTCTTGATACTATAACTGAGGGATTTTCTAAAGTCATATCAAAACATGAGACCTTACACCTTCATCCACAGATAGACGCCCTTGAAGAGGATGGAAGGGTAATTTTCATAGATGGTTCTTGCGTTAAAGCAGACTCTATTGTGTATTGTACAGGGTACTCCTATAGCTTCCCTTTTCTTGACACCAAAGGAATGGTGGTTATAGAAGATGACAGAGTGGGGCCTTTGTATGAGCACACTTTCCACCCTTTACTTTCTCCATCTCTTACTTTTATAGGCATCCCTAAAAAGATTTTAGGATTCCCTTTCTTTGAGTCCCAAGCAATGTGGATAGCTCAATTGCTTTCTGGGAAAAAAGTATTGCCATCATGGGAGGAAATGATGAAATCCATCGAGGAGTTCTACCATGAAAGAGAAGTAGCAGGCATTCCTACTCATGATATTGGAGATTTTGAGTATTGTGACAAATATGGTGAGAATGTAGGACTCCCACCATTACAAGAATGGAGAAAAGTGCTTTGTGTTTCAGCCATAATTAACTCCATTGTTAACTTGGAGACATATCGAGACTCATGGGATGATGATGAGGTGCTCCAAGAGGCCCTTCAAAGTCCTTACTTCACTCAACTTGGACTTGAAGATTGA

Protein sequence

>Msa0437480

MVSETNQSKNVCVIGAGPAGLVAAREIRKEGHKVIVLEQNHDIGGQWLYDDKNIEGEDPLGRNSFLKVHSSIYNSLRTQSPREVMGFTDFPFSTKKGRDMRRFPGHVEILMYLKDFCEWFGLREMIRFNTRVNYVGMLDDYGVCGNNLKWIVRSKEKDCDKVVEEVFDAVVVATGHYAQPKLPSIKGMDTWKRKQMHSHIYRTPEPFHNEVVVVVGNSYSGQDIAIELVGIAKEVHISSRSLDTITEGFSKVISKHETLHLHPQIDALEEDGRVIFIDGSCVKADSIVYCTGYSYSFPFLDTKGMVVIEDDRVGPLYEHTFHPLLSPSLTFIGIPKKILGFPFFESQAMWIAQLLSGKKVLPSWEEMMKSIEEFYHEREVAGIPTHDIGDFEYCDKYGENVGLPPLQEWRKVLCVSAIINSIVNLETYRDSWDDDEVLQEALQSPYFTQLGLED*