Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458310 | XP_024631910.1 | 84.507 | 71 | 7 | 2 | 87 | 155 | 1073 | 1141 | 3.01e-22 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458310 | A0A2K3MEG5 | 80.435 | 46 | 9 | 0 | 87 | 132 | 128 | 173 | 9.38e-15 | 78.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0458310 | 0.815091 | 1.104230e-51 | -8.615850e-47 |
| Msa0043570 | Msa0458310 | 0.801270 | 9.746059e-49 | -8.615850e-47 |
| Msa0094100 | Msa0458310 | 0.817570 | 3.078794e-52 | -8.615850e-47 |
| Msa0105420 | Msa0458310 | 0.810587 | 1.070490e-50 | -8.615850e-47 |
| Msa0115810 | Msa0458310 | 0.817624 | 2.994899e-52 | -8.615850e-47 |
| Msa0188630 | Msa0458310 | 0.800448 | 1.434247e-48 | -8.615850e-47 |
| Msa0195770 | Msa0458310 | 0.809663 | 1.692879e-50 | -8.615850e-47 |
| Msa0205850 | Msa0458310 | 0.806744 | 7.088508e-50 | -8.615850e-47 |
| Msa0208630 | Msa0458310 | 0.805278 | 1.441688e-49 | -8.615850e-47 |
| Msa0217400 | Msa0458310 | 0.823549 | 1.304662e-53 | -8.615850e-47 |
| Msa0230770 | Msa0458310 | 0.811396 | 7.149841e-51 | -8.615850e-47 |
| Msa0235890 | Msa0458310 | 0.803029 | 4.236677e-49 | -8.615850e-47 |
| Msa0419820 | Msa0458310 | 0.807941 | 3.951987e-50 | -8.615850e-47 |
| Msa0424920 | Msa0458310 | 0.806410 | 8.336647e-50 | -8.615850e-47 |
| Msa0425010 | Msa0458310 | 0.808672 | 2.760013e-50 | -8.615850e-47 |
| Msa0437710 | Msa0458310 | 0.803356 | 3.625007e-49 | -8.615850e-47 |
| Msa0442850 | Msa0458310 | 0.818658 | 1.747058e-52 | -8.615850e-47 |
| Msa0458310 | Msa0473240 | 0.831874 | 1.303372e-55 | -8.615850e-47 |
| Msa0458310 | Msa0484780 | 0.831417 | 1.689694e-55 | -8.615850e-47 |
| Msa0458310 | Msa0490350 | 0.812545 | 4.016555e-51 | -8.615850e-47 |
| Msa0458310 | Msa0508200 | 0.813773 | 2.160547e-51 | -8.615850e-47 |
| Msa0458310 | Msa0509970 | 0.801994 | 6.922899e-49 | -8.615850e-47 |
| Msa0458310 | Msa0516320 | 0.804319 | 2.287245e-49 | -8.615850e-47 |
| Msa0458310 | Msa0521880 | 0.803897 | 2.799987e-49 | -8.615850e-47 |
| Msa0458310 | Msa0535030 | 0.819236 | 1.291299e-52 | -8.615850e-47 |
| Msa0458310 | Msa0535060 | 0.824833 | 6.513487e-54 | -8.615850e-47 |
| Msa0458310 | Msa0540070 | 0.811348 | 7.323835e-51 | -8.615850e-47 |
| Msa0458310 | Msa0562440 | 0.810209 | 1.291472e-50 | -8.615850e-47 |
| Msa0458310 | Msa0568820 | 0.805002 | 1.646831e-49 | -8.615850e-47 |
| Msa0458310 | Msa0591770 | 0.821100 | 4.830778e-53 | -8.615850e-47 |
| Msa0458310 | Msa0621590 | 0.825239 | 5.223213e-54 | -8.615850e-47 |
| Msa0458310 | Msa0622630 | 0.805909 | 1.063148e-49 | -8.615850e-47 |
| Msa0458310 | Msa0638280 | 0.835367 | 1.748558e-56 | -8.615850e-47 |
| Msa0458310 | Msa0638320 | 0.835244 | 1.878916e-56 | -8.615850e-47 |
| Msa0458310 | Msa0657970 | 0.814693 | 1.352897e-51 | -8.615850e-47 |
| Msa0458310 | Msa0661870 | 0.831049 | 2.080889e-55 | -8.615850e-47 |
| Msa0458310 | Msa0669850 | 0.806214 | 9.168368e-50 | -8.615850e-47 |
| Msa0458310 | Msa0677270 | 0.820231 | 7.651028e-53 | -8.615850e-47 |
| Msa0458310 | Msa0693380 | 0.823579 | 1.283747e-53 | -8.615850e-47 |
| Msa0458310 | Msa0696640 | 0.800903 | 1.158364e-48 | -8.615850e-47 |
| Msa0458310 | Msa0706370 | 0.828127 | 1.068192e-54 | -8.615850e-47 |
| Msa0458310 | Msa0750350 | 0.807011 | 6.224552e-50 | -8.615850e-47 |
| Msa0458310 | Msa0850960 | 0.806682 | 7.304479e-50 | -8.615850e-47 |
| Msa0458310 | Msa0870620 | 0.802194 | 6.298869e-49 | -8.615850e-47 |
| Msa0458310 | Msa0908170 | 0.811020 | 8.626086e-51 | -8.615850e-47 |
| Msa0458310 | Msa0910980 | -0.808710 | 2.708786e-50 | -8.615850e-47 |
| Msa0458310 | Msa0933440 | 0.817312 | 3.519573e-52 | -8.615850e-47 |
| Msa0458310 | Msa0936270 | 0.823009 | 1.744471e-53 | -8.615850e-47 |
| Msa0458310 | Msa0946320 | 0.803473 | 3.428880e-49 | -8.615850e-47 |
| Msa0458310 | Msa0961420 | -0.814084 | 1.844534e-51 | -8.615850e-47 |
| Msa0458310 | Msa0990960 | 0.802697 | 4.960716e-49 | -8.615850e-47 |
| Msa0458310 | Msa1020720 | 0.811296 | 7.514558e-51 | -8.615850e-47 |
| Msa0458310 | Msa1026760 | 0.804102 | 2.538090e-49 | -8.615850e-47 |
| Msa0458310 | Msa1026790 | 0.803951 | 2.727484e-49 | -8.615850e-47 |
| Msa0458310 | Msa1027290 | 0.813157 | 2.949769e-51 | -8.615850e-47 |
| Msa0458310 | Msa1046300 | 0.819677 | 1.024347e-52 | -8.615850e-47 |
| Msa0458310 | Msa1070950 | 0.809869 | 1.528457e-50 | -8.615850e-47 |
| Msa0458310 | Msa1077950 | 0.800302 | 1.535905e-48 | -8.615850e-47 |
| Msa0458310 | Msa1082500 | 0.830589 | 2.696601e-55 | -8.615850e-47 |
| Msa0458310 | Msa1172670 | 0.816497 | 5.363062e-52 | -8.615850e-47 |
| Msa0458310 | Msa1187290 | 0.815619 | 8.426198e-52 | -8.615850e-47 |
| Msa0458310 | Msa1217860 | 0.824003 | 1.021384e-53 | -8.615850e-47 |
| Msa0458310 | Msa1233500 | 0.824140 | 9.486434e-54 | -8.615850e-47 |
| Msa0458310 | Msa1233890 | 0.807492 | 4.922880e-50 | -8.615850e-47 |
| Msa0458310 | Msa1264020 | 0.801444 | 8.979755e-49 | -8.615850e-47 |
| Msa0458310 | Msa1275770 | 0.824438 | 8.070587e-54 | -8.615850e-47 |
| Msa0458310 | Msa1280130 | 0.800615 | 1.326057e-48 | -8.615850e-47 |
| Msa0458310 | Msa1283860 | 0.802354 | 5.838590e-49 | -8.615850e-47 |
| Msa0458310 | Msa1297090 | 0.811795 | 5.853730e-51 | -8.615850e-47 |
| Msa0458310 | Msa1314340 | 0.800930 | 1.143655e-48 | -8.615850e-47 |
| Msa0458310 | Msa1369530 | 0.831283 | 1.822528e-55 | -8.615850e-47 |
| Msa0458310 | Msa1390050 | 0.809661 | 1.694261e-50 | -8.615850e-47 |
| Msa0458310 | Msa1408790 | 0.802862 | 4.586905e-49 | -8.615850e-47 |
| Msa0458310 | Msa1411020 | 0.800949 | 1.133823e-48 | -8.615850e-47 |
| Msa0458310 | Msa1439320 | 0.801913 | 7.193224e-49 | -8.615850e-47 |
| Msa0458310 | Msa1439960 | 0.816755 | 4.694540e-52 | -8.615850e-47 |
| Msa0458310 | Msa1463670 | 0.803247 | 3.818910e-49 | -8.615850e-47 |
| Msa0243710 | Msa0458310 | 0.810410 | 1.168865e-50 | -8.615850e-47 |
| Msa0258760 | Msa0458310 | 0.839059 | 1.986612e-57 | -8.615850e-47 |
| Msa0262510 | Msa0458310 | 0.823760 | 1.164537e-53 | -8.615850e-47 |
| Msa0265820 | Msa0458310 | 0.819239 | 1.289230e-52 | -8.615850e-47 |
| Msa0270270 | Msa0458310 | 0.824734 | 6.873362e-54 | -8.615850e-47 |
| Msa0296560 | Msa0458310 | 0.822135 | 2.785834e-53 | -8.615850e-47 |
| Msa0296760 | Msa0458310 | 0.811693 | 6.163166e-51 | -8.615850e-47 |
| Msa0323080 | Msa0458310 | 0.820177 | 7.873154e-53 | -8.615850e-47 |
| Msa0326670 | Msa0458310 | 0.805684 | 1.185521e-49 | -8.615850e-47 |
| Msa0335040 | Msa0458310 | 0.832644 | 8.404298e-56 | -8.615850e-47 |
| Msa0344830 | Msa0458310 | 0.830131 | 3.490614e-55 | -8.615850e-47 |
| Msa0347360 | Msa0458310 | 0.813006 | 3.183808e-51 | -8.615850e-47 |
| Msa0350990 | Msa0458310 | 0.802341 | 5.874727e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAGGGTTGACGATTC+AGG | 0.139753 | 3_3:+53820476 | Msa0458310:CDS |
| CCCATGCTTAAACATGATTT+TGG | 0.220225 | 3_3:-53816731 | None:intergenic |
| GGAAGCATACATTCCTTTCT+TGG | 0.243336 | 3_3:+53820808 | Msa0458310:CDS |
| TAGAAAGTTTGTCGCGATTT+TGG | 0.248482 | 3_3:+53816789 | Msa0458310:CDS |
| TCATCCTAGTAGTGCTGTTT+TGG | 0.283615 | 3_3:+53816583 | Msa0458310:CDS |
| GGAAGTATTGTTGATTTAGT+TGG | 0.330946 | 3_3:+53820776 | Msa0458310:CDS |
| CAGTTAGGACCGAGGCTTCT+TGG | 0.357951 | 3_3:+53820458 | Msa0458310:CDS |
| ATTTGTGTTCCAGATTGTTT+AGG | 0.397267 | 3_3:+53820431 | Msa0458310:intron |
| TGGATGAGGTTACCTTTGAA+TGG | 0.410546 | 3_3:+53820828 | Msa0458310:CDS |
| TAGGACCGAGGCTTCTTGGC+AGG | 0.415660 | 3_3:+53820462 | Msa0458310:CDS |
| GATTGTTTAGGCAGGCAGTT+AGG | 0.435522 | 3_3:+53820443 | Msa0458310:intron |
| TTGGCAGGGTTGACGATTCA+GGG | 0.436084 | 3_3:+53820477 | Msa0458310:CDS |
| GCGAAAATCAAGGTTCTACT+TGG | 0.451544 | 3_3:+53816763 | Msa0458310:CDS |
| GGATGAGGTTACCTTTGAAT+GGG | 0.455125 | 3_3:+53820829 | Msa0458310:CDS |
| ATTGCAAATGACAATCTTGA+AGG | 0.456999 | 3_3:+53820755 | Msa0458310:CDS |
| ACCAAAATCATGTTTAAGCA+TGG | 0.464696 | 3_3:+53816730 | Msa0458310:CDS |
| ATCATCATCACCATCTTCTT+CGG | 0.467287 | 3_3:-53820885 | None:intergenic |
| ATACATTCCTTTCTTGGATG+AGG | 0.471271 | 3_3:+53820814 | Msa0458310:CDS |
| AATATCTTTATCCCATTCAA+AGG | 0.483583 | 3_3:-53820840 | None:intergenic |
| AACTCCAAAACAGCACTACT+AGG | 0.500071 | 3_3:-53816587 | None:intergenic |
| GAAGACAGTGCCGAAGAAGA+TGG | 0.516667 | 3_3:+53820875 | Msa0458310:CDS |
| CCAAAATCATGTTTAAGCAT+GGG | 0.526145 | 3_3:+53816731 | Msa0458310:CDS |
| TGATTTAGTTGGAGAAGTTG+AGG | 0.526516 | 3_3:+53820787 | Msa0458310:CDS |
| AGGACCGAGGCTTCTTGGCA+GGG | 0.533687 | 3_3:+53820463 | Msa0458310:CDS |
| GTGTTCCAGATTGTTTAGGC+AGG | 0.537026 | 3_3:+53820435 | Msa0458310:intron |
| AAGGTAACCTCATCCAAGAA+AGG | 0.539010 | 3_3:-53820821 | None:intergenic |
| AACTTTAGAAGATAGCAAGC+TGG | 0.563289 | 3_3:+53820696 | Msa0458310:intron |
| TCAACCCTGCCAAGAAGCCT+CGG | 0.575981 | 3_3:-53820467 | None:intergenic |
| GTTCATAGAAGCGAAAATCA+AGG | 0.578387 | 3_3:+53816753 | Msa0458310:CDS |
| TGATGAAACATATTCTGACT+AGG | 0.610583 | 3_3:+53820910 | Msa0458310:CDS |
| TGGCAGGGTTGACGATTCAG+GGG | 0.627660 | 3_3:+53820478 | Msa0458310:CDS |
| TAGGCAGGCAGTTAGGACCG+AGG | 0.670686 | 3_3:+53820450 | Msa0458310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAAATAAAAAAAAAA+TGG | + | chr3_3:53817139-53817158 | Msa0458310:intron | 0.0% |
| !! | TATTTAAATAAAAAAAAAAT+GGG | + | chr3_3:53817140-53817159 | Msa0458310:intron | 0.0% |
| !! | TAATAATAATAATAATAATA+AGG | - | chr3_3:53818405-53818424 | None:intergenic | 0.0% |
| !!! | TATTTTCTTTCTTTATATTT+TGG | - | chr3_3:53816844-53816863 | None:intergenic | 10.0% |
| !!! | AAAATCAAACAAAATATTTT+TGG | - | chr3_3:53818271-53818290 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTAAAAAAATGT+TGG | + | chr3_3:53818762-53818781 | Msa0458310:intron | 10.0% |
| !! | TTTAATGAAATCCAAATAAA+AGG | - | chr3_3:53816663-53816682 | None:intergenic | 15.0% |
| !!! | TTTTGACAAATAAACTTATT+TGG | + | chr3_3:53817067-53817086 | Msa0458310:intron | 15.0% |
| !! | AGTGAGTAAATATATATTAT+TGG | + | chr3_3:53817090-53817109 | Msa0458310:intron | 15.0% |
| !! | TTGAAACAAAACAAAAAAAA+AGG | - | chr3_3:53817270-53817289 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTTTGTTTCA+AGG | + | chr3_3:53817269-53817288 | Msa0458310:intron | 15.0% |
| !!! | TTTTTTTTGTTTTGTTTCAA+GGG | + | chr3_3:53817270-53817289 | Msa0458310:intron | 15.0% |
| !!! | ATCATTTTCCTTATTTTTAA+AGG | + | chr3_3:53817436-53817455 | Msa0458310:intron | 15.0% |
| !!! | TCATTTTCCTTATTTTTAAA+GGG | + | chr3_3:53817437-53817456 | Msa0458310:intron | 15.0% |
| !!! | TATAATTAAAGTTTTTGTGA+CGG | + | chr3_3:53817753-53817772 | Msa0458310:intron | 15.0% |
| !! | ATTGAATCAAATTAAATTCT+GGG | - | chr3_3:53818098-53818117 | None:intergenic | 15.0% |
| !! | TATTGAATCAAATTAAATTC+TGG | - | chr3_3:53818099-53818118 | None:intergenic | 15.0% |
| !!! | TGTTTGATTTTATTTTGAAA+TGG | + | chr3_3:53818280-53818299 | Msa0458310:intron | 15.0% |
| !!! | AACTATTTTTTTTCTTTGAA+AGG | + | chr3_3:53818341-53818360 | Msa0458310:intron | 15.0% |
| !!! | ACAATTTATTTAAAATTCAG+CGG | - | chr3_3:53818556-53818575 | None:intergenic | 15.0% |
| !! | TATTGAGAAAAAAAGATATT+CGG | + | chr3_3:53818627-53818646 | Msa0458310:intron | 15.0% |
| !! | TCAACTCATTAATTAATTAA+TGG | + | chr3_3:53819220-53819239 | Msa0458310:intron | 15.0% |
| !!! | TTAATGTGTATCCTTTTATT+TGG | + | chr3_3:53816649-53816668 | Msa0458310:intron | 20.0% |
| !! | TAAATAAAAAAAAAATGGGG+TGG | + | chr3_3:53817144-53817163 | Msa0458310:intron | 20.0% |
| !!! | TGTCATTTTGTATTCTTTAT+TGG | - | chr3_3:53817245-53817264 | None:intergenic | 20.0% |
| !!! | TTAATCACCCTTTAAAAATA+AGG | - | chr3_3:53817447-53817466 | None:intergenic | 20.0% |
| !!! | TTTTTAAAGGGTGATTAAAA+AGG | + | chr3_3:53817449-53817468 | Msa0458310:intron | 20.0% |
| !!! | TTTTAAAGGGTGATTAAAAA+GGG | + | chr3_3:53817450-53817469 | Msa0458310:intron | 20.0% |
| !!! | AGAATTATTTTTGTCTCTAA+TGG | + | chr3_3:53817688-53817707 | Msa0458310:intron | 20.0% |
| !!! | TTTATGATTTGTCCTATAAA+AGG | + | chr3_3:53817841-53817860 | Msa0458310:intron | 20.0% |
| !!! | CAAAATATTTTTGGATCAAA+AGG | - | chr3_3:53818262-53818281 | None:intergenic | 20.0% |
| !! | AAAAAAATAGTTGCTTCATT+AGG | - | chr3_3:53818333-53818352 | None:intergenic | 20.0% |
| !!! | AAAACGGAATTATTTCTAAA+GGG | + | chr3_3:53818595-53818614 | Msa0458310:intron | 20.0% |
| !! | ATTAAAAGGTTACGAATTAA+CGG | + | chr3_3:53818686-53818705 | Msa0458310:intron | 20.0% |
| !!! | TAAGATTACATGTATCATTT+TGG | - | chr3_3:53818913-53818932 | None:intergenic | 20.0% |
| !! | ATTAATTCACATAAGAAATG+AGG | - | chr3_3:53818955-53818974 | None:intergenic | 20.0% |
| !! | TTCTTATGTGAATTAATATG+TGG | + | chr3_3:53818958-53818977 | Msa0458310:intron | 20.0% |
| !!! | TTAATTAATGAGTTGAAAGT+GGG | - | chr3_3:53819216-53819235 | None:intergenic | 20.0% |
| !!! | ATTAATTAATGAGTTGAAAG+TGG | - | chr3_3:53819217-53819236 | None:intergenic | 20.0% |
| !! | AGATTAATTCATGAAACAAA+TGG | + | chr3_3:53819503-53819522 | Msa0458310:intron | 20.0% |
| !!! | AAATTTTGTCTATTTTCCAA+TGG | - | chr3_3:53819697-53819716 | None:intergenic | 20.0% |
| !!! | GACATAAATTAACTTGAAAT+AGG | + | chr3_3:53819888-53819907 | Msa0458310:intron | 20.0% |
| !! | TCAAAATAACTTAAAAGTCT+TGG | - | chr3_3:53820010-53820029 | None:intergenic | 20.0% |
| ! | CCAAACATATGCTTAATAAA+TGG | - | chr3_3:53816695-53816714 | None:intergenic | 25.0% |
| ! | CCATTTATTAAGCATATGTT+TGG | + | chr3_3:53816692-53816711 | Msa0458310:intron | 25.0% |
| ! | ATAGAAACAACCAAATCAAA+AGG | - | chr3_3:53817043-53817062 | None:intergenic | 25.0% |
| ! | TATATTATTGGAGTAGCTAA+AGG | + | chr3_3:53817102-53817121 | Msa0458310:intron | 25.0% |
| ! | TTTCAAGGGTGATTATATTT+GGG | + | chr3_3:53817284-53817303 | Msa0458310:intron | 25.0% |
| !! | AAAAAGGGTGATAATGAATA+AGG | + | chr3_3:53817465-53817484 | Msa0458310:intron | 25.0% |
| ! | TATAAAAGGTAATTCAGAGA+CGG | + | chr3_3:53817855-53817874 | Msa0458310:intron | 25.0% |
| ! | AAAACTTTCAATTTCAGAGA+CGG | - | chr3_3:53818020-53818039 | None:intergenic | 25.0% |
| !! | TCAATATCTTGTTGTATGTT+TGG | + | chr3_3:53818160-53818179 | Msa0458310:intron | 25.0% |
| ! | ATCCTCTCTACTAAAATTAA+AGG | - | chr3_3:53818195-53818214 | None:intergenic | 25.0% |
| ! | GATTAGAAGTTAGAAGTAAA+AGG | + | chr3_3:53818467-53818486 | Msa0458310:intron | 25.0% |
| !!! | CAAAACGGAATTATTTCTAA+AGG | + | chr3_3:53818594-53818613 | Msa0458310:intron | 25.0% |
| ! | TTGGGATAAGAAAGAAAATT+GGG | - | chr3_3:53819051-53819070 | None:intergenic | 25.0% |
| ! | ATTGGGATAAGAAAGAAAAT+TGG | - | chr3_3:53819052-53819071 | None:intergenic | 25.0% |
| ! | TTGTTTCAATTTCTCTACTT+TGG | + | chr3_3:53819103-53819122 | Msa0458310:intron | 25.0% |
| ! | TGTTTCAATTTCTCTACTTT+GGG | + | chr3_3:53819104-53819123 | Msa0458310:intron | 25.0% |
| ! | AATTAATTAATGGTTGCATG+TGG | + | chr3_3:53819230-53819249 | Msa0458310:intron | 25.0% |
| !!! | TTAGAGTTGAATTTGTTGTT+TGG | + | chr3_3:53819414-53819433 | Msa0458310:intron | 25.0% |
| ! | ATTAATCTTGCACATAACAT+GGG | - | chr3_3:53819491-53819510 | None:intergenic | 25.0% |
| ! | AATTAATCTTGCACATAACA+TGG | - | chr3_3:53819492-53819511 | None:intergenic | 25.0% |
| ! | TTTAACGATGATAATCCATT+TGG | - | chr3_3:53819560-53819579 | None:intergenic | 25.0% |
| ! | ATCATCGTTAAAAGTGATTA+TGG | + | chr3_3:53819568-53819587 | Msa0458310:intron | 25.0% |
| ! | AATGTCAGTTAAAATTCCTA+TGG | + | chr3_3:53819608-53819627 | Msa0458310:intron | 25.0% |
| ! | GACAAAATTTAACACGAAAT+TGG | + | chr3_3:53819707-53819726 | Msa0458310:intron | 25.0% |
| ! | AATTTATGTCTTCTTTCTCA+TGG | - | chr3_3:53819878-53819897 | None:intergenic | 25.0% |
| ! | CTACTTGTAAATGTAACTTT+CGG | + | chr3_3:53819957-53819976 | Msa0458310:intron | 25.0% |
| ! | TTTATTACAAATTTCTGCGT+AGG | + | chr3_3:53820200-53820219 | Msa0458310:intron | 25.0% |
| ! | TTGAACATCAAAGGAAAAAA+AGG | - | chr3_3:53820372-53820391 | None:intergenic | 25.0% |
| ! | ACCATTAATGTAAAAATCCA+GGG | - | chr3_3:53820556-53820575 | None:intergenic | 25.0% |
| ! | ATCCTAAAGGAAAAAAAGAT+TGG | + | chr3_3:53820635-53820654 | Msa0458310:intron | 25.0% |
| !!! | AACCAATCTTTTTTTCCTTT+AGG | - | chr3_3:53820640-53820659 | None:intergenic | 25.0% |
| ! | TAAAGGAAAAAAAGATTGGT+TGG | + | chr3_3:53820639-53820658 | Msa0458310:intron | 25.0% |
| ! | AATATCTTTATCCCATTCAA+AGG | - | chr3_3:53820843-53820862 | None:intergenic | 25.0% |
| ACCAAAATCATGTTTAAGCA+TGG | + | chr3_3:53816730-53816749 | Msa0458310:CDS | 30.0% | |
| CCAAAATCATGTTTAAGCAT+GGG | + | chr3_3:53816731-53816750 | Msa0458310:CDS | 30.0% | |
| !! | TAAGTGATGACCTTTTGATT+TGG | + | chr3_3:53817030-53817049 | Msa0458310:intron | 30.0% |
| !! | TGCATTTTGAGTATCTTAAC+CGG | - | chr3_3:53817212-53817231 | None:intergenic | 30.0% |
| GTTTCAAGGGTGATTATATT+TGG | + | chr3_3:53817283-53817302 | Msa0458310:intron | 30.0% | |
| ! | TAAAAGTATGCTGAGAAGTT+AGG | - | chr3_3:53817313-53817332 | None:intergenic | 30.0% |
| !! | TTGGTAATGTGACAAAAAGA+CGG | - | chr3_3:53817354-53817373 | None:intergenic | 30.0% |
| ATTTAATCCAGGTGTAAATG+AGG | + | chr3_3:53817396-53817415 | Msa0458310:intron | 30.0% | |
| TCTTATCTCTTTCTATCTCA+AGG | - | chr3_3:53817540-53817559 | None:intergenic | 30.0% | |
| !! | AACTACTTGATGACAACTTT+TGG | + | chr3_3:53817596-53817615 | Msa0458310:intron | 30.0% |
| !! | ACTACTTGATGACAACTTTT+GGG | + | chr3_3:53817597-53817616 | Msa0458310:intron | 30.0% |
| AAAAAAAGCTGAAATACCGA+CGG | + | chr3_3:53817654-53817673 | Msa0458310:intron | 30.0% | |
| CGGAAAAAATCATTTAGAGA+CGG | + | chr3_3:53817726-53817745 | Msa0458310:intron | 30.0% | |
| !!! | GAGACGGAAATATTTTTAGA+CGG | - | chr3_3:53817797-53817816 | None:intergenic | 30.0% |
| ! | GTCTCTGAATTACCTTTTAT+AGG | - | chr3_3:53817856-53817875 | None:intergenic | 30.0% |
| ACGATTTATTTCCGTATCTA+AGG | + | chr3_3:53817887-53817906 | Msa0458310:intron | 30.0% | |
| ATCAAATTAAATTCTGGGCA+CGG | - | chr3_3:53818093-53818112 | None:intergenic | 30.0% | |
| ! | TATCTTGTTGTATGTTTGGA+TGG | + | chr3_3:53818164-53818183 | Msa0458310:intron | 30.0% |
| !! | TGCCTTTAATTTTAGTAGAG+AGG | + | chr3_3:53818190-53818209 | Msa0458310:intron | 30.0% |
| AAATAGTTGCTTCATTAGGT+GGG | - | chr3_3:53818329-53818348 | None:intergenic | 30.0% | |
| AAAATAGTTGCTTCATTAGG+TGG | - | chr3_3:53818330-53818349 | None:intergenic | 30.0% | |
| TAGAAGTTAGAAGTAAAAGG+AGG | + | chr3_3:53818470-53818489 | Msa0458310:intron | 30.0% | |
| AGAAGTTAGAAGTAAAAGGA+GGG | + | chr3_3:53818471-53818490 | Msa0458310:intron | 30.0% | |
| AGAAAGGAAAGATGAATGAA+TGG | - | chr3_3:53818497-53818516 | None:intergenic | 30.0% | |
| ATCAGTTAGACATGTCAAAA+CGG | + | chr3_3:53818579-53818598 | Msa0458310:intron | 30.0% | |
| ATATTATTCGAACGAACTTG+AGG | + | chr3_3:53818662-53818681 | Msa0458310:intron | 30.0% | |
| AACGAACTTGAGGAATTAAA+AGG | + | chr3_3:53818672-53818691 | Msa0458310:intron | 30.0% | |
| CTGATCTTAGGATAAAAGAA+GGG | - | chr3_3:53818808-53818827 | None:intergenic | 30.0% | |
| TCTGATCTTAGGATAAAAGA+AGG | - | chr3_3:53818809-53818828 | None:intergenic | 30.0% | |
| ! | TGATGAAGTTCAAAGTGTTA+TGG | - | chr3_3:53818883-53818902 | None:intergenic | 30.0% |
| AATTCACATAAGAAATGAGG+TGG | - | chr3_3:53818952-53818971 | None:intergenic | 30.0% | |
| TGGGATAAGAAAGAAAATTG+GGG | - | chr3_3:53819050-53819069 | None:intergenic | 30.0% | |
| AGTAGAGAAATTGAAACAAG+AGG | - | chr3_3:53819102-53819121 | None:intergenic | 30.0% | |
| ATACTTGAATTATTGAGCGT+TGG | + | chr3_3:53819273-53819292 | Msa0458310:intron | 30.0% | |
| AGAATAGAAGGAGAAATTGA+AGG | + | chr3_3:53819312-53819331 | Msa0458310:intron | 30.0% | |
| GAATAGAAGGAGAAATTGAA+GGG | + | chr3_3:53819313-53819332 | Msa0458310:intron | 30.0% | |
| !! | AATTTGTTGTTTGGAGGTAA+TGG | + | chr3_3:53819423-53819442 | Msa0458310:intron | 30.0% |
| !! | ATTTGTTGTTTGGAGGTAAT+GGG | + | chr3_3:53819424-53819443 | Msa0458310:intron | 30.0% |
| !! | TCATGAAACAAATGGTTTTG+AGG | + | chr3_3:53819511-53819530 | Msa0458310:intron | 30.0% |
| TCGTTAAAAGTGATTATGGA+TGG | + | chr3_3:53819572-53819591 | Msa0458310:intron | 30.0% | |
| ! | TACGTGATTCATTTTGTAGT+GGG | + | chr3_3:53819664-53819683 | Msa0458310:intron | 30.0% |
| ! | ATTTAACACGAAATTGGCTT+TGG | + | chr3_3:53819713-53819732 | Msa0458310:intron | 30.0% |
| TCTATGTTCATACATCACTT+TGG | + | chr3_3:53819839-53819858 | Msa0458310:intron | 30.0% | |
| TGAGTAGTCTAAGAATACAA+AGG | + | chr3_3:53820037-53820056 | Msa0458310:intron | 30.0% | |
| AATTTCTGCGTAGGAATATT+CGG | + | chr3_3:53820209-53820228 | Msa0458310:intron | 30.0% | |
| CACAAGTAATTGAACATCAA+AGG | - | chr3_3:53820381-53820400 | None:intergenic | 30.0% | |
| ! | CAATCTGGAACACAAATAAA+AGG | - | chr3_3:53820428-53820447 | None:intergenic | 30.0% |
| ATTTGTGTTCCAGATTGTTT+AGG | + | chr3_3:53820431-53820450 | Msa0458310:intron | 30.0% | |
| !!! | GTTTTATTTTATACCAACCC+TGG | + | chr3_3:53820536-53820555 | Msa0458310:intron | 30.0% |
| TTAATGTAAAAATCCAGGGT+TGG | - | chr3_3:53820552-53820571 | None:intergenic | 30.0% | |
| ! | ACCCTGGATTTTTACATTAA+TGG | + | chr3_3:53820552-53820571 | Msa0458310:intron | 30.0% |
| CACCATTAATGTAAAAATCC+AGG | - | chr3_3:53820557-53820576 | None:intergenic | 30.0% | |
| !! | GTGTGAAGTATACTTGTTTT+TGG | - | chr3_3:53820612-53820631 | None:intergenic | 30.0% |
| TACTTCACACAATATCCTAA+AGG | + | chr3_3:53820622-53820641 | Msa0458310:intron | 30.0% | |
| ATTGCAAATGACAATCTTGA+AGG | + | chr3_3:53820755-53820774 | Msa0458310:CDS | 30.0% | |
| !! | GGAAGTATTGTTGATTTAGT+TGG | + | chr3_3:53820776-53820795 | Msa0458310:CDS | 30.0% |
| !!! | GGACTCATCTTGTTTTTACT+CGG | + | chr3_3:53816621-53816640 | Msa0458310:CDS | 35.0% |
| ! | CCCATGCTTAAACATGATTT+TGG | - | chr3_3:53816734-53816753 | None:intergenic | 35.0% |
| GTTCATAGAAGCGAAAATCA+AGG | + | chr3_3:53816753-53816772 | Msa0458310:CDS | 35.0% | |
| ! | TAGAAAGTTTGTCGCGATTT+TGG | + | chr3_3:53816789-53816808 | Msa0458310:CDS | 35.0% |
| AGTGTGAAAAACGTATTGTG+AGG | + | chr3_3:53816815-53816834 | Msa0458310:intron | 35.0% | |
| GAGTGTGTAATGTGATATGT+TGG | - | chr3_3:53817373-53817392 | None:intergenic | 35.0% | |
| ACACACTCTCTATTTAATCC+AGG | + | chr3_3:53817385-53817404 | Msa0458310:intron | 35.0% | |
| TAGAAAGAGATAAGAGAGAG+TGG | + | chr3_3:53817545-53817564 | Msa0458310:intron | 35.0% | |
| ATTCTGTCTCTAAATTCCGT+CGG | - | chr3_3:53817673-53817692 | None:intergenic | 35.0% | |
| !!! | TTTTGTGACGGATTTAGAGA+CGG | + | chr3_3:53817765-53817784 | Msa0458310:intron | 35.0% |
| TAAATCTAGCTATGTCGAGA+CGG | - | chr3_3:53817825-53817844 | None:intergenic | 35.0% | |
| ACTACTTGACCATTTAGAGA+CGG | - | chr3_3:53817929-53817948 | None:intergenic | 35.0% | |
| AGTCAAACTTCTTGTAGAGA+CGG | + | chr3_3:53817958-53817977 | Msa0458310:intron | 35.0% | |
| TCAAATTAAATTCTGGGCAC+GGG | - | chr3_3:53818092-53818111 | None:intergenic | 35.0% | |
| ! | AATCATGTCTTTTCCCTTGA+AGG | + | chr3_3:53818714-53818733 | Msa0458310:intron | 35.0% |
| ! | ATCATGTCTTTTCCCTTGAA+GGG | + | chr3_3:53818715-53818734 | Msa0458310:intron | 35.0% |
| TAAAAGAAGGGAGAAATGAG+TGG | - | chr3_3:53818796-53818815 | None:intergenic | 35.0% | |
| AGAGATAGAAAGGAGTAAGA+GGG | - | chr3_3:53818839-53818858 | None:intergenic | 35.0% | |
| TCTTACTCCTTTCTATCTCT+CGG | + | chr3_3:53818839-53818858 | Msa0458310:intron | 35.0% | |
| ! | TGAAGTTCAAAGTGTTATGG+TGG | - | chr3_3:53818880-53818899 | None:intergenic | 35.0% |
| GAAAGAAAATTGGGGAAAGA+AGG | - | chr3_3:53819042-53819061 | None:intergenic | 35.0% | |
| ACCACTTCAATGCATGAATT+GGG | - | chr3_3:53819069-53819088 | None:intergenic | 35.0% | |
| ! | TTTGGGTTAAGATGAAGCTT+AGG | + | chr3_3:53819121-53819140 | Msa0458310:intron | 35.0% |
| GCAAGAACAAGAAGAATAGA+AGG | + | chr3_3:53819300-53819319 | Msa0458310:intron | 35.0% | |
| !! | GAGTTGAATTTGTTGTTTGG+AGG | + | chr3_3:53819417-53819436 | Msa0458310:intron | 35.0% |
| CAGTTAAAATTCCTATGGAC+CGG | + | chr3_3:53819613-53819632 | Msa0458310:intron | 35.0% | |
| CTACAAAATGAATCACGTAC+AGG | - | chr3_3:53819663-53819682 | None:intergenic | 35.0% | |
| ! | GTACGTGATTCATTTTGTAG+TGG | + | chr3_3:53819663-53819682 | Msa0458310:intron | 35.0% |
| !! | ACTTGAAATAGGCTTTGAGA+TGG | + | chr3_3:53819899-53819918 | Msa0458310:intron | 35.0% |
| AATTGCTGCGTAGGAATATT+CGG | + | chr3_3:53820331-53820350 | Msa0458310:intron | 35.0% | |
| ! | GGAATATTCGGTAAAGTACT+CGG | + | chr3_3:53820221-53820240 | Msa0458310:intron | 35.0% |
| ! | GAATATTCGGTAAAGTACTC+GGG | + | chr3_3:53820222-53820241 | Msa0458310:intron | 35.0% |
| TGGAACACAAATAAAAGGAG+TGG | - | chr3_3:53820423-53820442 | None:intergenic | 35.0% | |
| !! | ATTAATGGTGCTGCAAAGTT+TGG | + | chr3_3:53820567-53820586 | Msa0458310:intron | 35.0% |
| ! | AACTTTAGAAGATAGCAAGC+TGG | + | chr3_3:53820696-53820715 | Msa0458310:intron | 35.0% |
| TGATTTAGTTGGAGAAGTTG+AGG | + | chr3_3:53820787-53820806 | Msa0458310:CDS | 35.0% | |
| ATACATTCCTTTCTTGGATG+AGG | + | chr3_3:53820814-53820833 | Msa0458310:CDS | 35.0% | |
| ATCATCATCACCATCTTCTT+CGG | - | chr3_3:53820888-53820907 | None:intergenic | 35.0% | |
| !!! | TCATCCTAGTAGTGCTGTTT+TGG | + | chr3_3:53816583-53816602 | Msa0458310:CDS | 40.0% |
| AACTCCAAAACAGCACTACT+AGG | - | chr3_3:53816590-53816609 | None:intergenic | 40.0% | |
| !!! | TAGTAGTGCTGTTTTGGAGT+TGG | + | chr3_3:53816589-53816608 | Msa0458310:CDS | 40.0% |
| !!! | AGTAGTGCTGTTTTGGAGTT+GGG | + | chr3_3:53816590-53816609 | Msa0458310:CDS | 40.0% |
| !!! | TTTTGGAGTTGGGTGTTGTT+AGG | + | chr3_3:53816600-53816619 | Msa0458310:CDS | 40.0% |
| GCGAAAATCAAGGTTCTACT+TGG | + | chr3_3:53816763-53816782 | Msa0458310:CDS | 40.0% | |
| CTATGCTACCCAATTGCTAT+GGG | + | chr3_3:53817168-53817187 | Msa0458310:intron | 40.0% | |
| TGATGCTACCCATAGCAATT+GGG | - | chr3_3:53817179-53817198 | None:intergenic | 40.0% | |
| TCATACACCTCATTTACACC+TGG | - | chr3_3:53817406-53817425 | None:intergenic | 40.0% | |
| TGTTTAGTGTCCAACCCAAT+AGG | + | chr3_3:53817492-53817511 | Msa0458310:intron | 40.0% | |
| TTGGGGTATATCCACCTATT+GGG | - | chr3_3:53817509-53817528 | None:intergenic | 40.0% | |
| ATTGGGGTATATCCACCTAT+TGG | - | chr3_3:53817510-53817529 | None:intergenic | 40.0% | |
| AATAGGTGGATATACCCCAA+TGG | + | chr3_3:53817509-53817528 | Msa0458310:intron | 40.0% | |
| ATAGGTGGATATACCCCAAT+GGG | + | chr3_3:53817510-53817529 | Msa0458310:intron | 40.0% | |
| ! | GTCTCTAATGGACACAGAAT+TGG | + | chr3_3:53817700-53817719 | Msa0458310:intron | 40.0% |
| AATGGACACAGAATTGGAGA+CGG | + | chr3_3:53817706-53817725 | Msa0458310:intron | 40.0% | |
| GAGACGGAATACCTTAGATA+CGG | - | chr3_3:53817901-53817920 | None:intergenic | 40.0% | |
| CTACTTGACCATTTAGAGAC+GGG | - | chr3_3:53817928-53817947 | None:intergenic | 40.0% | |
| CGGGCAATGAAATAATTTGG+CGG | - | chr3_3:53818050-53818069 | None:intergenic | 40.0% | |
| ! | GTTGTTTCAGGAAGAGAGAA+AGG | - | chr3_3:53818513-53818532 | None:intergenic | 40.0% |
| !! | AGTTGTTGTGGTGTTGTTTC+AGG | - | chr3_3:53818525-53818544 | None:intergenic | 40.0% |
| GCGGAATATTACAGTTGTTG+TGG | - | chr3_3:53818537-53818556 | None:intergenic | 40.0% | |
| !!! | TTTTCCCTTGAAGGGCATTT+TGG | + | chr3_3:53818723-53818742 | Msa0458310:intron | 40.0% |
| ATGACCAAAATGCCCTTCAA+GGG | - | chr3_3:53818730-53818749 | None:intergenic | 40.0% | |
| AATGACCAAAATGCCCTTCA+AGG | - | chr3_3:53818731-53818750 | None:intergenic | 40.0% | |
| !!! | TGAAGGGCATTTTGGTCATT+TGG | + | chr3_3:53818731-53818750 | Msa0458310:intron | 40.0% |
| !!! | GAAGGGCATTTTGGTCATTT+GGG | + | chr3_3:53818732-53818751 | Msa0458310:intron | 40.0% |
| !!! | AAGGGCATTTTGGTCATTTG+GGG | + | chr3_3:53818733-53818752 | Msa0458310:intron | 40.0% |
| AAGGGAGAAATGAGTGGATA+AGG | - | chr3_3:53818790-53818809 | None:intergenic | 40.0% | |
| ! | AGGGAGTATGTTCTGATCTT+AGG | - | chr3_3:53818820-53818839 | None:intergenic | 40.0% |
| GAGAGATAGAAAGGAGTAAG+AGG | - | chr3_3:53818840-53818859 | None:intergenic | 40.0% | |
| ! | TCAAAGTGTTATGGTGGCTT+TGG | - | chr3_3:53818874-53818893 | None:intergenic | 40.0% |
| CATAAGAAATGAGGTGGCTT+TGG | - | chr3_3:53818946-53818965 | None:intergenic | 40.0% | |
| ! | AAATTGGGGAAAGAAGGTGT+AGG | - | chr3_3:53819036-53819055 | None:intergenic | 40.0% |
| TCCCAATTCATGCATTGAAG+TGG | + | chr3_3:53819065-53819084 | Msa0458310:intron | 40.0% | |
| CACCACTTCAATGCATGAAT+TGG | - | chr3_3:53819070-53819089 | None:intergenic | 40.0% | |
| CAATTCATGCATTGAAGTGG+TGG | + | chr3_3:53819068-53819087 | Msa0458310:intron | 40.0% | |
| TCAGAGCTCTTGTTCATCAA+TGG | + | chr3_3:53819337-53819356 | Msa0458310:intron | 40.0% | |
| AGAACTCACCATATCAAGTG+GGG | - | chr3_3:53819371-53819390 | None:intergenic | 40.0% | |
| GAGAACTCACCATATCAAGT+GGG | - | chr3_3:53819372-53819391 | None:intergenic | 40.0% | |
| AGAGAACTCACCATATCAAG+TGG | - | chr3_3:53819373-53819392 | None:intergenic | 40.0% | |
| !! | TTGTTTGGAGGTAATGGGTT+TGG | + | chr3_3:53819429-53819448 | Msa0458310:intron | 40.0% |
| !! | TGTTTGGAGGTAATGGGTTT+GGG | + | chr3_3:53819430-53819449 | Msa0458310:intron | 40.0% |
| GGGACATGTTTGAGAAAAGT+AGG | + | chr3_3:53819450-53819469 | Msa0458310:intron | 40.0% | |
| !!! | AAATGGTTTTGAGGCTGAGA+CGG | + | chr3_3:53819520-53819539 | Msa0458310:intron | 40.0% |
| GTGAAGCAATGACATCCAAA+TGG | + | chr3_3:53819542-53819561 | Msa0458310:intron | 40.0% | |
| ! | ATGACAGTTTTACCGACAAC+CGG | - | chr3_3:53819635-53819654 | None:intergenic | 40.0% |
| ! | TGTAGTGGGAATTGAACCAT+TGG | + | chr3_3:53819678-53819697 | Msa0458310:intron | 40.0% |
| TCGGCAAGCAAATTCGAATT+TGG | + | chr3_3:53819976-53819995 | Msa0458310:intron | 40.0% | |
| CGGCAAGCAAATTCGAATTT+GGG | + | chr3_3:53819977-53819996 | Msa0458310:intron | 40.0% | |
| ! | TGTTCTTGCGTTTTCGATCT+TGG | + | chr3_3:53820259-53820278 | Msa0458310:intron | 40.0% |
| ! | CGTGTTCGTGCATTTGAAAT+GGG | + | chr3_3:53820287-53820306 | Msa0458310:intron | 40.0% |
| ! | GGAAGCATACATTCCTTTCT+TGG | + | chr3_3:53820808-53820827 | Msa0458310:CDS | 40.0% |
| AAGGTAACCTCATCCAAGAA+AGG | - | chr3_3:53820824-53820843 | None:intergenic | 40.0% | |
| TGGATGAGGTTACCTTTGAA+TGG | + | chr3_3:53820828-53820847 | Msa0458310:CDS | 40.0% | |
| GGATGAGGTTACCTTTGAAT+GGG | + | chr3_3:53820829-53820848 | Msa0458310:CDS | 40.0% | |
| CCATAGCAATTGGGTAGCAT+AGG | - | chr3_3:53817170-53817189 | None:intergenic | 45.0% | |
| CCTATGCTACCCAATTGCTA+TGG | + | chr3_3:53817167-53817186 | Msa0458310:intron | 45.0% | |
| GTGATGCTACCCATAGCAAT+TGG | - | chr3_3:53817180-53817199 | None:intergenic | 45.0% | |
| TTAGTGTCCAACCCAATAGG+TGG | + | chr3_3:53817495-53817514 | Msa0458310:intron | 45.0% | |
| GGTATATCCACCTATTGGGT+TGG | - | chr3_3:53817505-53817524 | None:intergenic | 45.0% | |
| ! | TGTCGAGACGGATTTAGAGA+CGG | - | chr3_3:53817813-53817832 | None:intergenic | 45.0% |
| GAGACGGAAATAGTCAGAGA+CGG | - | chr3_3:53817991-53818010 | None:intergenic | 45.0% | |
| TCAGAGACGGAATTCAGAGA+CGG | - | chr3_3:53818007-53818026 | None:intergenic | 45.0% | |
| GGGCGGGCAATGAAATAATT+TGG | - | chr3_3:53818053-53818072 | None:intergenic | 45.0% | |
| CTCCTTTATGAAAAGTGGGC+GGG | - | chr3_3:53818069-53818088 | None:intergenic | 45.0% | |
| GCTCCTTTATGAAAAGTGGG+CGG | - | chr3_3:53818070-53818089 | None:intergenic | 45.0% | |
| CGGGCTCCTTTATGAAAAGT+GGG | - | chr3_3:53818073-53818092 | None:intergenic | 45.0% | |
| ACGGGCTCCTTTATGAAAAG+TGG | - | chr3_3:53818074-53818093 | None:intergenic | 45.0% | |
| !! | TATGGTGGCTTTGGAATGGA+TGG | - | chr3_3:53818865-53818884 | None:intergenic | 45.0% |
| !! | GTGTTATGGTGGCTTTGGAA+TGG | - | chr3_3:53818869-53818888 | None:intergenic | 45.0% |
| !! | AAATGAGGTGGCTTTGGACT+AGG | - | chr3_3:53818940-53818959 | None:intergenic | 45.0% |
| AAGGTGTAGGACTGTAGGTT+CGG | - | chr3_3:53819023-53819042 | None:intergenic | 45.0% | |
| ! | GAAAGAAGGTGTAGGACTGT+AGG | - | chr3_3:53819028-53819047 | None:intergenic | 45.0% |
| ! | TCATGCATTGAAGTGGTGGA+AGG | + | chr3_3:53819072-53819091 | Msa0458310:intron | 45.0% |
| ! | AGGTTTCGGTGCAAGAAGAA+TGG | - | chr3_3:53819180-53819199 | None:intergenic | 45.0% |
| !! | AGTTGAAAGTGGGCTGAACA+GGG | - | chr3_3:53819206-53819225 | None:intergenic | 45.0% |
| ! | GCATGTGGATTTTCTTGCTC+AGG | + | chr3_3:53819245-53819264 | Msa0458310:intron | 45.0% |
| GAGCTCTTGTTCATCAATGG+TGG | + | chr3_3:53819340-53819359 | Msa0458310:intron | 45.0% | |
| TGGTTCATCCCCACTTGATA+TGG | + | chr3_3:53819360-53819379 | Msa0458310:intron | 45.0% | |
| AATTCCTATGGACCGGTTGT+CGG | + | chr3_3:53819620-53819639 | Msa0458310:intron | 45.0% | |
| GCGTGTTCGTGCATTTGAAA+TGG | + | chr3_3:53820286-53820305 | Msa0458310:intron | 45.0% | |
| ACGTTCTGTAATTGCTGCGT+AGG | + | chr3_3:53820322-53820341 | Msa0458310:intron | 45.0% | |
| GTGTTCCAGATTGTTTAGGC+AGG | + | chr3_3:53820435-53820454 | Msa0458310:intron | 45.0% | |
| AACTGCCTGCCTAAACAATC+TGG | - | chr3_3:53820443-53820462 | None:intergenic | 45.0% | |
| GATTGTTTAGGCAGGCAGTT+AGG | + | chr3_3:53820443-53820462 | Msa0458310:intron | 45.0% | |
| GTTGGCTGTGATTAAGACCA+AGG | + | chr3_3:53820657-53820676 | Msa0458310:intron | 45.0% | |
| TTGAATTGTGCTTCTCGCCT+TGG | - | chr3_3:53820677-53820696 | None:intergenic | 45.0% | |
| !! | ATTTAAATAAAAAAAAAATG+GGG | + | chr3_3:53817141-53817160 | Msa0458310:intron | 5.0% |
| !!! | TAAATCTAATTTATTTTAAT+TGG | + | chr3_3:53818135-53818154 | Msa0458310:intron | 5.0% |
| GTATCTTAACCGGTGTCCAG+AGG | - | chr3_3:53817202-53817221 | None:intergenic | 50.0% | |
| TATCTCAAGGTGCGCCCATT+GGG | - | chr3_3:53817527-53817546 | None:intergenic | 50.0% | |
| TTTAGAGACGGGCACAGAGA+CGG | - | chr3_3:53817917-53817936 | None:intergenic | 50.0% | |
| TCTCTGTGCCCGTCTCTAAA+TGG | + | chr3_3:53817917-53817936 | Msa0458310:intron | 50.0% | |
| !! | TGCCCGCCCACTTTTCATAA+AGG | + | chr3_3:53818064-53818083 | Msa0458310:intron | 50.0% |
| TGGATGGCCGAGAGATAGAA+AGG | - | chr3_3:53818849-53818868 | None:intergenic | 50.0% | |
| ! | GTAGGACTGTAGGTTCGGTT+GGG | - | chr3_3:53819018-53819037 | None:intergenic | 50.0% |
| ! | TGTAGGACTGTAGGTTCGGT+TGG | - | chr3_3:53819019-53819038 | None:intergenic | 50.0% |
| GCTGAACAGGGGTTAGGTTT+CGG | - | chr3_3:53819194-53819213 | None:intergenic | 50.0% | |
| !! | GTTGAAAGTGGGCTGAACAG+GGG | - | chr3_3:53819205-53819224 | None:intergenic | 50.0% |
| !! | GAGTTGAAAGTGGGCTGAAC+AGG | - | chr3_3:53819207-53819226 | None:intergenic | 50.0% |
| TTTACCGACAACCGGTCCAT+AGG | - | chr3_3:53819627-53819646 | None:intergenic | 50.0% | |
| TTGGCAGGGTTGACGATTCA+GGG | + | chr3_3:53820477-53820496 | Msa0458310:CDS | 50.0% | |
| ! | GAAGACAGTGCCGAAGAAGA+TGG | + | chr3_3:53820875-53820894 | Msa0458310:CDS | 50.0% |
| GCTATGGGTAGCATCACCTC+TGG | + | chr3_3:53817183-53817202 | Msa0458310:intron | 55.0% | |
| GTAGCATCACCTCTGGACAC+CGG | + | chr3_3:53817190-53817209 | Msa0458310:intron | 55.0% | |
| ATCTCAAGGTGCGCCCATTG+GGG | - | chr3_3:53817526-53817545 | None:intergenic | 55.0% | |
| CTATCTCAAGGTGCGCCCAT+TGG | - | chr3_3:53817528-53817547 | None:intergenic | 55.0% | |
| ! | CTGTAGGTTCGGTTGGGACT+AGG | - | chr3_3:53819012-53819031 | None:intergenic | 55.0% |
| !! | AAGTGGGCTGAACAGGGGTT+AGG | - | chr3_3:53819200-53819219 | None:intergenic | 55.0% |
| CAGTTAGGACCGAGGCTTCT+TGG | + | chr3_3:53820458-53820477 | Msa0458310:CDS | 55.0% | |
| TCAACCCTGCCAAGAAGCCT+CGG | - | chr3_3:53820470-53820489 | None:intergenic | 55.0% | |
| CTTGGCAGGGTTGACGATTC+AGG | + | chr3_3:53820476-53820495 | Msa0458310:CDS | 55.0% | |
| TGGCAGGGTTGACGATTCAG+GGG | + | chr3_3:53820478-53820497 | Msa0458310:CDS | 55.0% | |
| ! | GGTTCGGTTGGGACTAGGAG+AGG | - | chr3_3:53819007-53819026 | None:intergenic | 60.0% |
| TAGGCAGGCAGTTAGGACCG+AGG | + | chr3_3:53820450-53820469 | Msa0458310:CDS | 60.0% | |
| TAGGACCGAGGCTTCTTGGC+AGG | + | chr3_3:53820462-53820481 | Msa0458310:CDS | 60.0% | |
| AGGACCGAGGCTTCTTGGCA+GGG | + | chr3_3:53820463-53820482 | Msa0458310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 53816560 | 53820931 | 53816560 | ID=Msa0458310;Name=Msa0458310 |
| chr3_3 | mRNA | 53816560 | 53820931 | 53816560 | ID=Msa0458310-mRNA-1;Parent=Msa0458310;Name=Msa0458310-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|0|0|0.5|1|1|4|0|155 |
| chr3_3 | exon | 53816560 | 53816642 | 53816560 | ID=Msa0458310-mRNA-1:exon:10597;Parent=Msa0458310-mRNA-1 |
| chr3_3 | exon | 53816726 | 53816826 | 53816726 | ID=Msa0458310-mRNA-1:exon:10598;Parent=Msa0458310-mRNA-1 |
| chr3_3 | exon | 53820444 | 53820499 | 53820444 | ID=Msa0458310-mRNA-1:exon:10599;Parent=Msa0458310-mRNA-1 |
| chr3_3 | exon | 53820704 | 53820931 | 53820704 | ID=Msa0458310-mRNA-1:exon:10600;Parent=Msa0458310-mRNA-1 |
| chr3_3 | CDS | 53816560 | 53816642 | 53816560 | ID=Msa0458310-mRNA-1:cds;Parent=Msa0458310-mRNA-1 |
| chr3_3 | CDS | 53816726 | 53816826 | 53816726 | ID=Msa0458310-mRNA-1:cds;Parent=Msa0458310-mRNA-1 |
| chr3_3 | CDS | 53820444 | 53820499 | 53820444 | ID=Msa0458310-mRNA-1:cds;Parent=Msa0458310-mRNA-1 |
| chr3_3 | CDS | 53820704 | 53820931 | 53820704 | ID=Msa0458310-mRNA-1:cds;Parent=Msa0458310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
