AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644170 MtrunA17_Chr4g0031141 96.074 484 19 0 1 484 1 484 0.0 970
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644170 AT3G46450.1 50.513 487 230 5 1 482 1 481 2.23e-162 469
Msa0644170 AT3G46450.3 50.513 487 230 5 1 482 1 481 2.23e-162 469
Msa0644170 AT3G46450.2 49.697 495 230 6 1 482 1 489 2.38e-159 461

Find 144 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATAAGTATTATCGTATTT+TGG 0.089032 4_3:-47733291 Msa0644170:CDS
CAATAAAAGGTGTGTGTTTA+TGG 0.148166 4_3:-47733077 Msa0644170:three_prime_UTR
TGAATTGCCTTCGGTTTATA+TGG 0.190483 4_3:-47738405 Msa0644170:exon
AGGATTTGTCTTTGTGAATT+AGG 0.190565 4_3:-47733164 Msa0644170:three_prime_UTR
CACAAAACCAAATACCTTTC+TGG 0.191441 4_3:+47735262 None:intergenic
ACTAGGGAAGTAAACTAATT+TGG 0.213604 4_3:+47733217 None:intergenic
TTGCCTACCCACCATTTAAA+TGG 0.217975 4_3:-47738094 Msa0644170:CDS
ATGTGTGAATTGTTCTAAAA+TGG 0.228006 4_3:-47733482 Msa0644170:CDS
AACATCTAATATAGTTATTT+AGG 0.231674 4_3:+47733004 None:intergenic
TTCAAAAGTGGGCTGTGTTC+AGG 0.251395 4_3:-47738070 Msa0644170:CDS
TCAGTATCACAGGTAGAATA+TGG 0.282203 4_3:-47734091 Msa0644170:intron
TTGTGTCTGGCAAGGTCTGC+AGG 0.284744 4_3:-47738129 Msa0644170:CDS
CACAGCTCAGCTGCAATAAA+AGG 0.287535 4_3:-47733090 Msa0644170:three_prime_UTR
CCAGCAGCAGCAGAATTGTT+AGG 0.345640 4_3:-47733423 Msa0644170:CDS
ATATCTTTGTGCAAAGCCTT+TGG 0.349948 4_3:+47738277 None:intergenic
AGAGTGCAACCTCATGAAAC+TGG 0.353698 4_3:-47733448 Msa0644170:CDS
AGATAAAATATCTCTAGTTT+TGG 0.358304 4_3:-47733117 Msa0644170:three_prime_UTR
AAAACTATCTATGCCATGTT+TGG 0.369522 4_3:+47738514 None:intergenic
GTGGGCTGTGTTCAGGGGTT+TGG 0.370104 4_3:-47738063 Msa0644170:CDS
GCAATGGAAAGAACTAATAA+TGG 0.372345 4_3:+47737442 None:intergenic
GAGCAAATCGAGGTTTATCT+TGG 0.375243 4_3:+47734271 None:intergenic
TATCTTTGTGCAAAGCCTTT+GGG 0.386982 4_3:+47738278 None:intergenic
AATAAAAGGTGTGTGTTTAT+GGG 0.388612 4_3:-47733076 Msa0644170:three_prime_UTR
ACTACGTCTACATCCAACTA+TGG 0.397066 4_3:-47733365 Msa0644170:CDS
CCCTGTCTCATTGTAAGGCT+TGG 0.403991 4_3:-47734318 Msa0644170:CDS
TGTGGTCAAATATGGTGTTC+TGG 0.416093 4_3:-47734365 Msa0644170:CDS
AGATTACCTGAAGAAAAGTC+TGG 0.416322 4_3:+47733882 None:intergenic
AGAGTAGATGCCCTTGTGTC+TGG 0.419220 4_3:-47738142 Msa0644170:CDS
ACAGACCCTGTCTCATTGTA+AGG 0.420449 4_3:-47734323 Msa0644170:CDS
ATCTTGCAGAATGGAAGAAC+AGG 0.423646 4_3:+47733970 None:intergenic
GGTCATAGTTGTTGCTTTGA+CGG 0.427086 4_3:+47733332 None:intergenic
GTTGTCATAGCTCTTGGTGC+TGG 0.427292 4_3:-47733268 Msa0644170:CDS
TGCTGAACCGGCTCCTGTGC+AGG 0.432616 4_3:-47737341 Msa0644170:CDS
CAGAGAAACTGAATTGCCTT+CGG 0.435592 4_3:-47738414 Msa0644170:five_prime_UTR
TTCAGAAATATCTGCTGAAC+CGG 0.436907 4_3:-47737353 Msa0644170:CDS
TCAACACTGCCATCATATCT+TGG 0.436939 4_3:-47733517 Msa0644170:CDS
GCAATAACACGAGCAATTGC+TGG 0.437422 4_3:+47733905 None:intergenic
GCTGGAAATGTGGTCAAATA+TGG 0.437920 4_3:-47734373 Msa0644170:CDS
TCAAAAGTGGGCTGTGTTCA+GGG 0.438998 4_3:-47738069 Msa0644170:CDS
GAACATGCGTCAATTATAGA+TGG 0.444032 4_3:+47732879 None:intergenic
CTGTGCTCTTTACAGAATCA+TGG 0.444767 4_3:-47732956 Msa0644170:three_prime_UTR
GAATTGCCTTCGGTTTATAT+GGG 0.445226 4_3:-47738404 Msa0644170:exon
CCTAACAATTCTGCTGCTGC+TGG 0.448203 4_3:+47733423 None:intergenic
AACAAACAACCAAGACGATT+AGG 0.448537 4_3:+47733941 None:intergenic
ACGAACCTGGTGTGTAAGAT+TGG 0.449481 4_3:-47733240 Msa0644170:exon
CCTGTCTCATTGTAAGGCTT+GGG 0.451557 4_3:-47734317 Msa0644170:CDS
CCCTCAAATTACAGTATTGG+TGG 0.455195 4_3:-47734041 Msa0644170:CDS
CAGTATCACAGGTAGAATAT+GGG 0.455947 4_3:-47734090 Msa0644170:CDS
AAGGGATTAGTTTGCCAGAA+AGG 0.456937 4_3:-47735276 Msa0644170:intron
GACTTTGGAAGCAGTGCTGT+GGG 0.461131 4_3:-47738224 Msa0644170:CDS
TAAAACTTCAGGAGCTCTCT+CGG 0.463316 4_3:+47735345 None:intergenic
AATTCTTTCAGTAGAAGAGC+TGG 0.470395 4_3:-47734391 Msa0644170:CDS
TTGTAGAGAACACCTCTAGT+AGG 0.473771 4_3:-47733184 Msa0644170:three_prime_UTR
TGCAGGATAATTTGAATACT+AGG 0.474906 4_3:-47737324 Msa0644170:intron
CCCAAGCCTTACAATGAGAC+AGG 0.475196 4_3:+47734317 None:intergenic
CATTTAAATGGATTCAAAAG+TGG 0.478870 4_3:-47738082 Msa0644170:CDS
AAATTATCCTGCACAGGAGC+CGG 0.479392 4_3:+47737334 None:intergenic
CCACCAATACTGTAATTTGA+GGG 0.482481 4_3:+47734041 None:intergenic
CGGTCATCTAATACCATAGT+TGG 0.485418 4_3:+47733352 None:intergenic
TTGCTGCTTTAGAAGCTGTA+AGG 0.485821 4_3:-47738175 Msa0644170:CDS
TCCACCAATACTGTAATTTG+AGG 0.487804 4_3:+47734040 None:intergenic
CTACAAATTTATTTCAACTA+GGG 0.489309 4_3:+47733201 None:intergenic
AAACCCTCAAATTACAGTAT+TGG 0.490708 4_3:-47734044 Msa0644170:CDS
AACGAAGAGCTGGAAAATCA+AGG 0.492588 4_3:-47735295 Msa0644170:CDS
GCGTATTGTCTTCTTGATTG+AGG 0.494104 4_3:+47734431 None:intergenic
AAACAAAACAGTGCTATCAC+TGG 0.494792 4_3:-47738338 Msa0644170:CDS
GATCACTTTCCTAATCGTCT+TGG 0.495856 4_3:-47733950 Msa0644170:CDS
TGTGTGAATTGTTCTAAAAT+GGG 0.496722 4_3:-47733481 Msa0644170:CDS
CAGCAGCAGCAGAATTGTTA+GGG 0.497606 4_3:-47733422 Msa0644170:CDS
TGTGTCTGGCAAGGTCTGCA+GGG 0.502343 4_3:-47738128 Msa0644170:CDS
ATTTGCATGGGAATTCTCAA+TGG 0.503124 4_3:+47734001 None:intergenic
GACTCAACTCAACGAAGAGC+TGG 0.511333 4_3:-47735305 Msa0644170:CDS
ATTTAAATGGATTCAAAAGT+GGG 0.513377 4_3:-47738081 Msa0644170:CDS
GATCTTTGCTTCAGTATCAC+AGG 0.515027 4_3:-47734101 Msa0644170:intron
AGCAAATCGAGGTTTATCTT+GGG 0.515766 4_3:+47734272 None:intergenic
AAAACTTCAGGAGCTCTCTC+GGG 0.516604 4_3:+47735346 None:intergenic
CAAGAAGACAATACGCTGGC+GGG 0.519577 4_3:-47734424 Msa0644170:CDS
TGTCTTTGTGAATTAGGAGG+TGG 0.521353 4_3:-47733158 Msa0644170:three_prime_UTR
TCTACAAATTTATTTCAACT+AGG 0.523383 4_3:+47733200 None:intergenic
TGCAGACCTTGCCAGACACA+AGG 0.523801 4_3:+47738131 None:intergenic
CACCATGCGTCAATGAAACA+AGG 0.525789 4_3:+47738246 None:intergenic
AGATAAACCTCGATTTGCTC+AGG 0.528310 4_3:-47734268 Msa0644170:CDS
ATTTAAATGGTGGGTAGGCA+AGG 0.528331 4_3:+47738096 None:intergenic
AACAGCCTTTACTGATGCAC+TGG 0.530440 4_3:-47737419 Msa0644170:CDS
TTGTCTTCTTGATTGAGGTA+AGG 0.532061 4_3:+47734436 None:intergenic
AATCCATTTAAATGGTGGGT+AGG 0.532716 4_3:+47738091 None:intergenic
TTTGAATCCATTTAAATGGT+GGG 0.533081 4_3:+47738087 None:intergenic
TCAAATATGGTGTTCTGGCA+TGG 0.535129 4_3:-47734360 Msa0644170:CDS
ACATTCCAGTGCATCAGTAA+AGG 0.536622 4_3:+47737414 None:intergenic
TCATTGACGCATGGTGACTT+TGG 0.537854 4_3:-47738239 Msa0644170:CDS
GTATTCAAATTATCCTGCAC+AGG 0.542724 4_3:+47737328 None:intergenic
ATGCGTCAATTATAGATGGC+TGG 0.544307 4_3:+47732883 None:intergenic
CTTCGGTTTATATGGGAGAG+AGG 0.544472 4_3:-47738397 Msa0644170:exon
ACAGGATCTCAGTATTTGCA+TGG 0.546008 4_3:+47733988 None:intergenic
GGGTTTGGTTAAAAGCATGC+AGG 0.548426 4_3:-47738048 Msa0644170:intron
CTGCTGGTCCCAGTTTCATG+AGG 0.549096 4_3:+47733439 None:intergenic
CAAAAGTGGGCTGTGTTCAG+GGG 0.551310 4_3:-47738068 Msa0644170:CDS
CATGATTCTGTAAAGAGCAC+AGG 0.554370 4_3:+47732957 None:intergenic
ATTTGTCTTTGTGAATTAGG+AGG 0.559115 4_3:-47733161 Msa0644170:three_prime_UTR
CTGGTTGCGTCGCGTCCCAA+AGG 0.563821 4_3:-47738293 Msa0644170:CDS
CAGCTGCCTCCAAGATATGA+TGG 0.565306 4_3:+47733508 None:intergenic
AGATGCCCTTGTGTCTGGCA+AGG 0.565370 4_3:-47738137 Msa0644170:CDS
TTCGGTTTATATGGGAGAGA+GGG 0.566140 4_3:-47738396 Msa0644170:exon
ATCAGTAAAGGCTGTTGCAA+TGG 0.567300 4_3:+47737426 None:intergenic
TGACTTTGGAAGCAGTGCTG+TGG 0.568986 4_3:-47738225 Msa0644170:CDS
GGTTTATATGGGAGAGAGGG+TGG 0.571830 4_3:-47738393 Msa0644170:exon
ACGAAGAGCTGGAAAATCAA+GGG 0.572330 4_3:-47735294 Msa0644170:CDS
TGTGAATTAGGAGGTGGCAA+TGG 0.572346 4_3:-47733152 Msa0644170:three_prime_UTR
CCCCTTGTTTCATTGACGCA+TGG 0.577087 4_3:-47738248 Msa0644170:CDS
AGGAAAGTGATCTTGCAGAA+TGG 0.579301 4_3:+47733961 None:intergenic
ACACTGCCATCATATCTTGG+AGG 0.583075 4_3:-47733514 Msa0644170:CDS
ACAGTATTGGTGGACTGTGA+AGG 0.583388 4_3:-47734031 Msa0644170:CDS
TGGGATAGCTTGCAGCACAT+TGG 0.587085 4_3:-47734298 Msa0644170:CDS
GATTACCTGAAGAAAAGTCT+GGG 0.589318 4_3:+47733883 None:intergenic
TTTGGCCAATCTTACACACC+AGG 0.590862 4_3:+47733235 None:intergenic
AACAAAACAGTGCTATCACT+GGG 0.597539 4_3:-47738337 Msa0644170:CDS
CTCTCTCCCATATAAACCGA+AGG 0.598494 4_3:+47738398 None:intergenic
TTAAGTTGTTTATCCAAACA+TGG 0.600242 4_3:-47738527 None:intergenic
TAGAAGCTGTGTAAAATCTG+TGG 0.605768 4_3:+47734478 None:intergenic
CAGGATCTCAGTATTTGCAT+GGG 0.606115 4_3:+47733989 None:intergenic
AGAATTAGTAATATGATCTG+AGG 0.616840 4_3:+47737381 None:intergenic
TGACAGCGGTTCTCAACACC+TGG 0.616965 4_3:+47733311 None:intergenic
CAGTAGAAGAGCTGGAAATG+TGG 0.618720 4_3:-47734383 Msa0644170:CDS
GAGTGCAACCTCATGAAACT+GGG 0.622128 4_3:-47733447 Msa0644170:CDS
CCAAGCCTTACAATGAGACA+GGG 0.623318 4_3:+47734318 None:intergenic
GTTGGATGTAGACGTAGTGA+TGG 0.623773 4_3:+47733370 None:intergenic
AGTATCACAGGTAGAATATG+GGG 0.625550 4_3:-47734089 Msa0644170:CDS
GGTGCTGGAGTATACGAACC+TGG 0.628612 4_3:-47733253 Msa0644170:CDS
GCAGACCTTGCCAGACACAA+GGG 0.633261 4_3:+47738132 None:intergenic
CTAATTGCCTGAGCAAATCG+AGG 0.635399 4_3:+47734261 None:intergenic
ACCATGCGTCAATGAAACAA+GGG 0.635590 4_3:+47738247 None:intergenic
CAGCAGCAGAATTGTTAGGG+AGG 0.639469 4_3:-47733419 Msa0644170:CDS
GATGCACTGGAATGTAGTGA+TGG 0.651523 4_3:-47737406 Msa0644170:CDS
ACAAAGACAAATCCTACTAG+AGG 0.653155 4_3:+47733172 None:intergenic
TCAAGAAGACAATACGCTGG+CGG 0.653895 4_3:-47734425 Msa0644170:CDS
TCAAAGCAACAACTATGACC+AGG 0.665242 4_3:-47733329 Msa0644170:CDS
ATTGTTCTAAAATGGGCAAG+CGG 0.677673 4_3:-47733474 Msa0644170:CDS
TACGATAATACTTATGACAG+CGG 0.678800 4_3:+47733297 None:intergenic
CCATGCGTCAATGAAACAAG+GGG 0.685581 4_3:+47738248 None:intergenic
TTATCTAGTAGTATCTACGT+GGG 0.695851 4_3:-47732983 Msa0644170:three_prime_UTR
CAATCAAGAAGACAATACGC+TGG 0.698783 4_3:-47734428 Msa0644170:CDS
ACTTTGGAAGCAGTGCTGTG+GGG 0.718142 4_3:-47738223 Msa0644170:CDS
GGATGATATCAGTGACAACG+AGG 0.724876 4_3:-47733398 Msa0644170:CDS
GTTATCTAGTAGTATCTACG+TGG 0.726669 4_3:-47732984 Msa0644170:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTTTTATCAAGAT+TGG + chr4_3:47735363-47735382 None:intergenic 10.0%
!!! ATATTTACCTTTTTTTTTTT+TGG - chr4_3:47736425-47736444 Msa0644170:intron 10.0%
!!! ATCATTGAATATTTTTTTTT+GGG - chr4_3:47736700-47736719 Msa0644170:intron 10.0%
!!! ATTTAACAAGTTTTAGAAAT+TGG - chr4_3:47733491-47733510 Msa0644170:CDS 15.0%
!! AAAATTATCATCTTTATGTT+TGG - chr4_3:47734388-47734407 Msa0644170:CDS 15.0%
!! ATTAAAAAGTAAGTTTAGTT+AGG - chr4_3:47734763-47734782 Msa0644170:intron 15.0%
!!! AAGTTTTAGAATATGAAAAA+TGG - chr4_3:47736053-47736072 Msa0644170:intron 15.0%
!!! AATCATTTTTTAGTTTTTGT+TGG - chr4_3:47736231-47736250 Msa0644170:intron 15.0%
!! AAAAAAAAGGTAAATATTGT+TGG + chr4_3:47736422-47736441 None:intergenic 15.0%
!! AACATTAAATAAAATCACTT+AGG - chr4_3:47736602-47736621 Msa0644170:intron 15.0%
!!! GATCATTGAATATTTTTTTT+TGG - chr4_3:47736699-47736718 Msa0644170:intron 15.0%
!! AACATCTAATATAGTTATTT+AGG + chr4_3:47738382-47738401 None:intergenic 15.0%
!!! ATTTAAATGGATTCAAAAGT+GGG - chr4_3:47733302-47733321 Msa0644170:CDS 20.0%
!!! TCAAGTTATTATTAACCTTT+TGG - chr4_3:47734198-47734217 Msa0644170:intron 20.0%
!! ATAGCAAATATGTTAAATGT+GGG + chr4_3:47734315-47734334 None:intergenic 20.0%
!! AATAGCAAATATGTTAAATG+TGG + chr4_3:47734316-47734335 None:intergenic 20.0%
!! TTATTTACATATGACATTTG+TGG - chr4_3:47735211-47735230 Msa0644170:intron 20.0%
!! TATGTCAATATATATTCCTT+GGG - chr4_3:47735287-47735306 Msa0644170:CDS 20.0%
!!! TAATTTGAAACAATTGTTAC+CGG - chr4_3:47735405-47735424 Msa0644170:intron 20.0%
!! GGCATATATCTAATTTATAT+GGG + chr4_3:47735580-47735599 None:intergenic 20.0%
!! AGGCATATATCTAATTTATA+TGG + chr4_3:47735581-47735600 None:intergenic 20.0%
!!! TTTAGATTTAGTGTTGAATT+AGG - chr4_3:47735642-47735661 Msa0644170:intron 20.0%
!! ACTAGAACATAAACAAATAT+GGG + chr4_3:47735724-47735743 None:intergenic 20.0%
!! AACTAGAACATAAACAAATA+TGG + chr4_3:47735725-47735744 None:intergenic 20.0%
!!! TTTTCATATTCTAAAACTTC+AGG + chr4_3:47736052-47736071 None:intergenic 20.0%
!! TCTATTTCAAACTAATCTAT+TGG - chr4_3:47736192-47736211 Msa0644170:intron 20.0%
!!! ACCTTTGATTTGTTAATTAA+TGG - chr4_3:47736483-47736502 Msa0644170:intron 20.0%
!! ACCATTAATTAACAAATCAA+AGG + chr4_3:47736487-47736506 None:intergenic 20.0%
!! ATATTTACTTGCATATTTCT+TGG - chr4_3:47736820-47736839 Msa0644170:intron 20.0%
!!! CTATTTTCTTTGTTGTTTTA+GGG + chr4_3:47737544-47737563 None:intergenic 20.0%
!!! AATGCAATTTTAATTATCCT+AGG - chr4_3:47737664-47737683 Msa0644170:intron 20.0%
!!! ATGCAATTTTAATTATCCTA+GGG - chr4_3:47737665-47737684 Msa0644170:intron 20.0%
!!! TTTAAAGAAAGCACAAATTT+TGG + chr4_3:47737742-47737761 None:intergenic 20.0%
!!! ATTTTAAGCATTTGAATCAT+AGG - chr4_3:47737769-47737788 Msa0644170:intron 20.0%
!! AAGAAAAAGTTAAAGATAGA+AGG - chr4_3:47737809-47737828 Msa0644170:intron 20.0%
!!! TCATAAGTATTATCGTATTT+TGG - chr4_3:47738092-47738111 Msa0644170:CDS 20.0%
!!! CATAAGTATTATCGTATTTT+GGG - chr4_3:47738093-47738112 Msa0644170:CDS 20.0%
!! CTACAAATTTATTTCAACTA+GGG + chr4_3:47738185-47738204 None:intergenic 20.0%
!! TCTACAAATTTATTTCAACT+AGG + chr4_3:47738186-47738205 None:intergenic 20.0%
!!! AGATAAAATATCTCTAGTTT+TGG - chr4_3:47738266-47738285 Msa0644170:CDS 20.0%
! TTTGAATCCATTTAAATGGT+GGG + chr4_3:47733299-47733318 None:intergenic 25.0%
!! TTTTGAATCCATTTAAATGG+TGG + chr4_3:47733300-47733319 None:intergenic 25.0%
!! CACTTTTGAATCCATTTAAA+TGG + chr4_3:47733303-47733322 None:intergenic 25.0%
!! CATTTAAATGGATTCAAAAG+TGG - chr4_3:47733301-47733320 Msa0644170:CDS 25.0%
! ATTCAGTTACATAGCAAAAA+TGG + chr4_3:47733448-47733467 None:intergenic 25.0%
! TTAACCTTTACAGAAAAAAG+GGG + chr4_3:47733777-47733796 None:intergenic 25.0%
! CTTAACCTTTACAGAAAAAA+GGG + chr4_3:47733778-47733797 None:intergenic 25.0%
! AGAATTAGTAATATGATCTG+AGG + chr4_3:47734005-47734024 None:intergenic 25.0%
! AATACTAGGTATATGATTTG+AGG - chr4_3:47734073-47734092 Msa0644170:CDS 25.0%
! ATACTAGGTATATGATTTGA+GGG - chr4_3:47734074-47734093 Msa0644170:CDS 25.0%
! AGCTAACTTTACCAATTATA+TGG + chr4_3:47734252-47734271 None:intergenic 25.0%
! ATTACACTTAAGTTTCTGTT+TGG - chr4_3:47734333-47734352 Msa0644170:CDS 25.0%
! TTTAGTGATCTTAGAGTTAA+TGG - chr4_3:47734365-47734384 Msa0644170:CDS 25.0%
! ACAAAGAAAATTCAGAAACA+GGG + chr4_3:47734448-47734467 None:intergenic 25.0%
! TACAAAGAAAATTCAGAAAC+AGG + chr4_3:47734449-47734468 None:intergenic 25.0%
! ATTTCTCAAATGTTCTTTCA+TGG + chr4_3:47734494-47734513 None:intergenic 25.0%
! ATTCAAGAGAAATAATAGCT+AGG - chr4_3:47734584-47734603 Msa0644170:intron 25.0%
!! TTAGATTTTGCACAATTTCA+TGG + chr4_3:47734896-47734915 None:intergenic 25.0%
! TTAATTGATGTTCGAATTGT+AGG + chr4_3:47735079-47735098 None:intergenic 25.0%
! ACTGAAAAAAACATCTATTG+TGG - chr4_3:47735179-47735198 Msa0644170:intron 25.0%
!! ATTTGTGGTCTATTCTTTTT+GGG - chr4_3:47735226-47735245 Msa0644170:intron 25.0%
! GTATGTCAATATATATTCCT+TGG - chr4_3:47735286-47735305 Msa0644170:CDS 25.0%
! AACACTAAATCTAAATCAAG+AGG + chr4_3:47735637-47735656 None:intergenic 25.0%
! TTTGATACCATCTTAGAATT+TGG + chr4_3:47735674-47735693 None:intergenic 25.0%
!!! AAGTTTTTTGAATTTGTGCT+AGG + chr4_3:47735923-47735942 None:intergenic 25.0%
!! TATCATGTTATAGCATTTTC+CGG + chr4_3:47736162-47736181 None:intergenic 25.0%
! CAGATGACCAAAAAAAAAAA+AGG + chr4_3:47736435-47736454 None:intergenic 25.0%
! TATGCTATTGCTATCTAATA+AGG + chr4_3:47736803-47736822 None:intergenic 25.0%
! ATTGGTTACTCATTAAACTA+AGG + chr4_3:47737262-47737281 None:intergenic 25.0%
!!! TTTTAGGGTGAATAAATGAA+GGG + chr4_3:47737529-47737548 None:intergenic 25.0%
!!! GCTATTTTCTTTGTTGTTTT+AGG + chr4_3:47737545-47737564 None:intergenic 25.0%
! AACAAAGAAAATAGCAAAGA+GGG - chr4_3:47737550-47737569 Msa0644170:intron 25.0%
!!! TGCAATTTTAATTATCCTAG+GGG - chr4_3:47737666-47737685 Msa0644170:intron 25.0%
!!! TTTAACTTTTTCTTAGTAGC+TGG + chr4_3:47737803-47737822 None:intergenic 25.0%
!!! ATGTGTGAATTGTTCTAAAA+TGG - chr4_3:47737901-47737920 Msa0644170:intron 25.0%
!!! TGTGTGAATTGTTCTAAAAT+GGG - chr4_3:47737902-47737921 Msa0644170:intron 25.0%
!! AATAAAAGGTGTGTGTTTAT+GGG - chr4_3:47738307-47738326 Msa0644170:CDS 25.0%
AAAACTATCTATGCCATGTT+TGG + chr4_3:47732872-47732891 None:intergenic 30.0%
AAAAACGTACAAAAAACAGC+TGG - chr4_3:47733071-47733090 Msa0644170:three_prime_UTR 30.0%
GCTATGTAACTGAATTATCT+TGG - chr4_3:47733453-47733472 Msa0644170:CDS 30.0%
AGATTTATGTTCCCTTTCTA+TGG - chr4_3:47733660-47733679 Msa0644170:intron 30.0%
CCTTAACCTTTACAGAAAAA+AGG + chr4_3:47733779-47733798 None:intergenic 30.0%
!!! CCTTTTTTCTGTAAAGGTTA+AGG - chr4_3:47733776-47733795 Msa0644170:intron 30.0%
TCACGTATATAGCAGAATTT+GGG + chr4_3:47733878-47733897 None:intergenic 30.0%
TTCACGTATATAGCAGAATT+TGG + chr4_3:47733879-47733898 None:intergenic 30.0%
GCAATGGAAAGAACTAATAA+TGG + chr4_3:47733944-47733963 None:intergenic 30.0%
TGCAGGATAATTTGAATACT+AGG - chr4_3:47734059-47734078 Msa0644170:CDS 30.0%
CTACTAATCACATCATAACA+AGG + chr4_3:47734118-47734137 None:intergenic 30.0%
CAATTATATGGTCCTCAATT+AGG + chr4_3:47734240-47734259 None:intergenic 30.0%
CTAATTGAGGACCATATAAT+TGG - chr4_3:47734238-47734257 Msa0644170:intron 30.0%
TTATCATCTTTATGTTTGGC+AGG - chr4_3:47734392-47734411 Msa0644170:CDS 30.0%
ACAGGGATAATTAGAAACAT+AGG + chr4_3:47734431-47734450 None:intergenic 30.0%
TTAACTCTCAAGTATATAGC+TGG + chr4_3:47734644-47734663 None:intergenic 30.0%
GTCTGAACTATGACAAAATT+TGG - chr4_3:47734677-47734696 Msa0644170:intron 30.0%
AGACTTCTCTATTACAACAT+TGG - chr4_3:47734786-47734805 Msa0644170:intron 30.0%
! ATTTTGCACAATTTCATGGA+TGG + chr4_3:47734892-47734911 None:intergenic 30.0%
!! TTTGATTTTCCAACAAGACT+CGG + chr4_3:47735028-47735047 None:intergenic 30.0%
TGTAACCAGAATTTCGAAAA+TGG + chr4_3:47735140-47735159 None:intergenic 30.0%
! CATTTGTGGTCTATTCTTTT+TGG - chr4_3:47735225-47735244 Msa0644170:intron 30.0%
! TCAACATTCTACAGTACTTT+TGG + chr4_3:47735450-47735469 None:intergenic 30.0%
!! AGTTTTGTAAAGACTATCTC+AGG + chr4_3:47735601-47735620 None:intergenic 30.0%
GAGATAGTCTTTACAAAACT+TGG - chr4_3:47735601-47735620 Msa0644170:intron 30.0%
TAAATCTAAATCAAGAGGTG+AGG + chr4_3:47735632-47735651 None:intergenic 30.0%
GCTATATTACTAGTTGAAGT+CGG + chr4_3:47735837-47735856 None:intergenic 30.0%
TATAGCTAAAGCTGTCTATA+AGG - chr4_3:47735851-47735870 Msa0644170:intron 30.0%
TAAAGCTGTCTATAAGGATT+GGG - chr4_3:47735857-47735876 Msa0644170:intron 30.0%
!! TGAAAAGCACTTTATTCAAG+AGG + chr4_3:47735963-47735982 None:intergenic 30.0%
!!! TGTGCATAATTTTGCTATTC+CGG - chr4_3:47736140-47736159 Msa0644170:intron 30.0%
! TTTCTCTTTGTTTCCAAACA+AGG + chr4_3:47736279-47736298 None:intergenic 30.0%
CTAAAGTGAATTACTCACTT+TGG - chr4_3:47736528-47736547 Msa0644170:intron 30.0%
ACATATTCAATTGTGAGATC+CGG + chr4_3:47736559-47736578 None:intergenic 30.0%
TAAATATTCAGTAGACAGAG+GGG + chr4_3:47737206-47737225 None:intergenic 30.0%
GTAAATATTCAGTAGACAGA+GGG + chr4_3:47737207-47737226 None:intergenic 30.0%
TGTAAATATTCAGTAGACAG+AGG + chr4_3:47737208-47737227 None:intergenic 30.0%
AAACCCTCAAATTACAGTAT+TGG - chr4_3:47737339-47737358 Msa0644170:CDS 30.0%
!!! GTTTTAGGGTGAATAAATGA+AGG + chr4_3:47737530-47737549 None:intergenic 30.0%
CAACAAAGAAAATAGCAAAG+AGG - chr4_3:47737549-47737568 Msa0644170:intron 30.0%
TCTCAGTCAATAAAAAAACG+AGG - chr4_3:47737580-47737599 Msa0644170:intron 30.0%
CTCAGTCAATAAAAAAACGA+GGG - chr4_3:47737581-47737600 Msa0644170:intron 30.0%
TACGATAATACTTATGACAG+CGG + chr4_3:47738089-47738108 None:intergenic 30.0%
ACTAGGGAAGTAAACTAATT+TGG + chr4_3:47738169-47738188 None:intergenic 30.0%
AGGATTTGTCTTTGTGAATT+AGG - chr4_3:47738219-47738238 Msa0644170:CDS 30.0%
ATTTGTCTTTGTGAATTAGG+AGG - chr4_3:47738222-47738241 Msa0644170:CDS 30.0%
! CAATAAAAGGTGTGTGTTTA+TGG - chr4_3:47738306-47738325 Msa0644170:CDS 30.0%
TTATCTAGTAGTATCTACGT+GGG - chr4_3:47738400-47738419 Msa0644170:exon 30.0%
TGAATTGCCTTCGGTTTATA+TGG - chr4_3:47732978-47732997 Msa0644170:three_prime_UTR 35.0%
GAATTGCCTTCGGTTTATAT+GGG - chr4_3:47732979-47732998 Msa0644170:three_prime_UTR 35.0%
AAACAAAACAGTGCTATCAC+TGG - chr4_3:47733045-47733064 Msa0644170:three_prime_UTR 35.0%
AACAAAACAGTGCTATCACT+GGG - chr4_3:47733046-47733065 Msa0644170:three_prime_UTR 35.0%
TATCTTTGTGCAAAGCCTTT+GGG + chr4_3:47733108-47733127 None:intergenic 35.0%
ATATCTTTGTGCAAAGCCTT+TGG + chr4_3:47733109-47733128 None:intergenic 35.0%
!! AATCCATTTAAATGGTGGGT+AGG + chr4_3:47733295-47733314 None:intergenic 35.0%
ATCTACCAAGTCCATAGAAA+GGG + chr4_3:47733674-47733693 None:intergenic 35.0%
AATCTACCAAGTCCATAGAA+AGG + chr4_3:47733675-47733694 None:intergenic 35.0%
TGCTATATACGTGAAGCATA+TGG - chr4_3:47733884-47733903 Msa0644170:intron 35.0%
TTAATACTCTCTCTTCTACC+AGG - chr4_3:47733907-47733926 Msa0644170:CDS 35.0%
! ATAATGGTCTTGATAGTACC+TGG + chr4_3:47733928-47733947 None:intergenic 35.0%
TTCAGAAATATCTGCTGAAC+CGG - chr4_3:47734030-47734049 Msa0644170:CDS 35.0%
GTATTCAAATTATCCTGCAC+AGG + chr4_3:47734058-47734077 None:intergenic 35.0%
!!! TTATTAACCTTTTGGCTCAG+AGG - chr4_3:47734206-47734225 Msa0644170:intron 35.0%
!!! TATTAACCTTTTGGCTCAGA+GGG - chr4_3:47734207-47734226 Msa0644170:intron 35.0%
CATAGTTCAGACTTCAGTTT+AGG + chr4_3:47734669-47734688 None:intergenic 35.0%
!! TTAGTGCCTTATTTCCAACT+TGG - chr4_3:47734976-47734995 Msa0644170:intron 35.0%
TTGATGTTCGAATTGTAGGT+AGG + chr4_3:47735075-47735094 None:intergenic 35.0%
AATGAAAAGACTGTGTAGTC+TGG - chr4_3:47735100-47735119 Msa0644170:intron 35.0%
! TGTGTAGTCTGGTTTATTCA+TGG - chr4_3:47735111-47735130 Msa0644170:intron 35.0%
ATCATTCATGTTGAAACCCA+AGG + chr4_3:47735306-47735325 None:intergenic 35.0%
! TTTGAAACAATTGTTACCGG+AGG - chr4_3:47735408-47735427 Msa0644170:intron 35.0%
TTGAAACAATTGTTACCGGA+GGG - chr4_3:47735409-47735428 Msa0644170:intron 35.0%
TTATTGAGCCGATAATGTAC+AGG - chr4_3:47735473-47735492 Msa0644170:intron 35.0%
TATTGAGCCGATAATGTACA+GGG - chr4_3:47735474-47735493 Msa0644170:intron 35.0%
! GTTGAGTCCAAATTCTAAGA+TGG - chr4_3:47735664-47735683 Msa0644170:intron 35.0%
TCTATCCAAGACCTGTTATT+GGG - chr4_3:47735695-47735714 Msa0644170:intron 35.0%
CTAAAGCTGTCTATAAGGAT+TGG - chr4_3:47735856-47735875 Msa0644170:intron 35.0%
AAACCCAAAAACCAGATCAA+GGG + chr4_3:47735892-47735911 None:intergenic 35.0%
!! TAGTTTGCCAGAAAGGTATT+TGG - chr4_3:47736114-47736133 Msa0644170:intron 35.0%
CACAAAACCAAATACCTTTC+TGG + chr4_3:47736124-47736143 None:intergenic 35.0%
!!! AGTTGCTTTTCACAATTGAG+CGG - chr4_3:47736331-47736350 Msa0644170:intron 35.0%
AAGTGAATTACTCACTTTGG+AGG - chr4_3:47736531-47736550 Msa0644170:intron 35.0%
TTGAGCGAGTTTCAAAATCT+TGG - chr4_3:47736768-47736787 Msa0644170:intron 35.0%
AGTTTCAAAATCTTGGTCAG+AGG - chr4_3:47736775-47736794 Msa0644170:intron 35.0%
TAGAAGCTGTGTAAAATCTG+TGG + chr4_3:47736908-47736927 None:intergenic 35.0%
TTGTCTTCTTGATTGAGGTA+AGG + chr4_3:47736950-47736969 None:intergenic 35.0%
AATTCTTTCAGTAGAAGAGC+TGG - chr4_3:47736992-47737011 Msa0644170:intron 35.0%
AGCAAATCGAGGTTTATCTT+GGG + chr4_3:47737114-47737133 None:intergenic 35.0%
AAAGCAAACATGAGAACTAG+TGG + chr4_3:47737167-47737186 None:intergenic 35.0%
AAATATTCAGTAGACAGAGG+GGG + chr4_3:47737205-47737224 None:intergenic 35.0%
GATACTGAAGCAAAGATCAT+TGG + chr4_3:47737280-47737299 None:intergenic 35.0%
TCAGTATCACAGGTAGAATA+TGG - chr4_3:47737292-47737311 Msa0644170:intron 35.0%
CAGTATCACAGGTAGAATAT+GGG - chr4_3:47737293-47737312 Msa0644170:intron 35.0%
AGTATCACAGGTAGAATATG+GGG - chr4_3:47737294-47737313 Msa0644170:intron 35.0%
CCACCAATACTGTAATTTGA+GGG + chr4_3:47737345-47737364 None:intergenic 35.0%
TCCACCAATACTGTAATTTG+AGG + chr4_3:47737346-47737365 None:intergenic 35.0%
ATTTGCATGGGAATTCTCAA+TGG + chr4_3:47737385-47737404 None:intergenic 35.0%
AACAAACAACCAAGACGATT+AGG + chr4_3:47737445-47737464 None:intergenic 35.0%
GATTACCTGAAGAAAAGTCT+GGG + chr4_3:47737503-47737522 None:intergenic 35.0%
AGATTACCTGAAGAAAAGTC+TGG + chr4_3:47737504-47737523 None:intergenic 35.0%
GTTGTTGATCATGAAGTACA+CGG - chr4_3:47737618-47737637 Msa0644170:intron 35.0%
!! ATTGTTCTAAAATGGGCAAG+CGG - chr4_3:47737909-47737928 Msa0644170:intron 35.0%
ACAAAGACAAATCCTACTAG+AGG + chr4_3:47738214-47738233 None:intergenic 35.0%
GTTATCTAGTAGTATCTACG+TGG - chr4_3:47738399-47738418 Msa0644170:exon 35.0%
GAACATGCGTCAATTATAGA+TGG + chr4_3:47738507-47738526 None:intergenic 35.0%
CAGAGAAACTGAATTGCCTT+CGG - chr4_3:47732969-47732988 Msa0644170:three_prime_UTR 40.0%
TTCGGTTTATATGGGAGAGA+GGG - chr4_3:47732987-47733006 Msa0644170:three_prime_UTR 40.0%
ACCATGCGTCAATGAAACAA+GGG + chr4_3:47733139-47733158 None:intergenic 40.0%
!! TTGCTGCTTTAGAAGCTGTA+AGG - chr4_3:47733208-47733227 Msa0644170:three_prime_UTR 40.0%
!! ATTTAAATGGTGGGTAGGCA+AGG + chr4_3:47733290-47733309 None:intergenic 40.0%
TTGCCTACCCACCATTTAAA+TGG - chr4_3:47733289-47733308 Msa0644170:CDS 40.0%
CATCGATGTTTGTGTACTTC+TGG - chr4_3:47733521-47733540 Msa0644170:CDS 40.0%
! TTGTTCCACGACGTTTTATG+TGG - chr4_3:47733551-47733570 Msa0644170:CDS 40.0%
! TGTTCCACGACGTTTTATGT+GGG - chr4_3:47733552-47733571 Msa0644170:CDS 40.0%
ATGTTCCCTTTCTATGGACT+TGG - chr4_3:47733666-47733685 Msa0644170:intron 40.0%
!!! GTAGCCCCTTTTTTCTGTAA+AGG - chr4_3:47733770-47733789 Msa0644170:intron 40.0%
AAAGGTTAAGGAGCAGAGAA+CGG - chr4_3:47733788-47733807 Msa0644170:intron 40.0%
ATCAGTAAAGGCTGTTGCAA+TGG + chr4_3:47733960-47733979 None:intergenic 40.0%
ACATTCCAGTGCATCAGTAA+AGG + chr4_3:47733972-47733991 None:intergenic 40.0%
AAATAACCCTCTGAGCCAAA+AGG + chr4_3:47734216-47734235 None:intergenic 40.0%
GAGGGTTATTTGCCTAATTG+AGG - chr4_3:47734225-47734244 Msa0644170:intron 40.0%
GTTAAATGTGGGATCATCCA+GGG + chr4_3:47734304-47734323 None:intergenic 40.0%
TGTTAAATGTGGGATCATCC+AGG + chr4_3:47734305-47734324 None:intergenic 40.0%
ATGTTTGGCAGGTTTCTTTC+TGG - chr4_3:47734403-47734422 Msa0644170:CDS 40.0%
GTTAGTAGTCGTTAGTAGTC+TGG - chr4_3:47734846-47734865 Msa0644170:intron 40.0%
! TTGTAGAAACTGGTTCAGTG+TGG + chr4_3:47734936-47734955 None:intergenic 40.0%
CAAGAAGACGTTGTAGAAAC+TGG + chr4_3:47734946-47734965 None:intergenic 40.0%
! AGTGCACCAAGTTGGAAATA+AGG + chr4_3:47734985-47735004 None:intergenic 40.0%
! GGCTTCCATTTTCGAAATTC+TGG - chr4_3:47735132-47735151 Msa0644170:intron 40.0%
CAACCAACATGCTCAGAAAA+CGG + chr4_3:47735252-47735271 None:intergenic 40.0%
!! GAAAGGCTAAGGTTGATTTG+GGG + chr4_3:47735504-47735523 None:intergenic 40.0%
! CGAAAGGCTAAGGTTGATTT+GGG + chr4_3:47735505-47735524 None:intergenic 40.0%
! TCGAAAGGCTAAGGTTGATT+TGG + chr4_3:47735506-47735525 None:intergenic 40.0%
TAACAAGCACCAACATCGAA+AGG + chr4_3:47735521-47735540 None:intergenic 40.0%
GTCTATCCAAGACCTGTTAT+TGG - chr4_3:47735694-47735713 Msa0644170:intron 40.0%
AATATGGGTGACCCAATAAC+AGG + chr4_3:47735709-47735728 None:intergenic 40.0%
! GTTCTAGTTGACTTAGTCCT+AGG - chr4_3:47735736-47735755 Msa0644170:intron 40.0%
AAAACCAGATCAAGGGATGA+GGG + chr4_3:47735885-47735904 None:intergenic 40.0%
AAAAACCAGATCAAGGGATG+AGG + chr4_3:47735886-47735905 None:intergenic 40.0%
!!! TCATCCCTTGATCTGGTTTT+TGG - chr4_3:47735885-47735904 Msa0644170:intron 40.0%
!!! CATCCCTTGATCTGGTTTTT+GGG - chr4_3:47735886-47735905 Msa0644170:intron 40.0%
CAAACCCAAAAACCAGATCA+AGG + chr4_3:47735893-47735912 None:intergenic 40.0%
!!! CTGGTTTTTGGGTTTGAGTT+AGG - chr4_3:47735897-47735916 Msa0644170:intron 40.0%
TAAAACTTCAGGAGCTCTCT+CGG + chr4_3:47736041-47736060 None:intergenic 40.0%
AACGAAGAGCTGGAAAATCA+AGG - chr4_3:47736088-47736107 Msa0644170:intron 40.0%
ACGAAGAGCTGGAAAATCAA+GGG - chr4_3:47736089-47736108 Msa0644170:intron 40.0%
!! AAGGGATTAGTTTGCCAGAA+AGG - chr4_3:47736107-47736126 Msa0644170:intron 40.0%
TTGTTTCCAAACAAGGAGAC+AGG + chr4_3:47736272-47736291 None:intergenic 40.0%
TTAGAGAGTAAAGCGAGCAA+AGG + chr4_3:47736512-47736531 None:intergenic 40.0%
CACTTTATTCATCCCCAACT+CGG - chr4_3:47736648-47736667 Msa0644170:intron 40.0%
ACTTTATTCATCCCCAACTC+GGG - chr4_3:47736649-47736668 Msa0644170:intron 40.0%
AAGTACTTAATCCCCGAGTT+GGG + chr4_3:47736664-47736683 None:intergenic 40.0%
TAAGTACTTAATCCCCGAGT+TGG + chr4_3:47736665-47736684 None:intergenic 40.0%
GCACAAACACCACTAAATCA+TGG + chr4_3:47736865-47736884 None:intergenic 40.0%
GCGTATTGTCTTCTTGATTG+AGG + chr4_3:47736955-47736974 None:intergenic 40.0%
CAATCAAGAAGACAATACGC+TGG - chr4_3:47736955-47736974 Msa0644170:intron 40.0%
GCTGGAAATGTGGTCAAATA+TGG - chr4_3:47737010-47737029 Msa0644170:intron 40.0%
TGTGGTCAAATATGGTGTTC+TGG - chr4_3:47737018-47737037 Msa0644170:intron 40.0%
TCAAATATGGTGTTCTGGCA+TGG - chr4_3:47737023-47737042 Msa0644170:intron 40.0%
GAGCAAATCGAGGTTTATCT+TGG + chr4_3:47737115-47737134 None:intergenic 40.0%
! AGATAAACCTCGATTTGCTC+AGG - chr4_3:47737115-47737134 Msa0644170:intron 40.0%
GATCTTTGCTTCAGTATCAC+AGG - chr4_3:47737282-47737301 Msa0644170:intron 40.0%
! CCCTCAAATTACAGTATTGG+TGG - chr4_3:47737342-47737361 Msa0644170:CDS 40.0%
CAGGATCTCAGTATTTGCAT+GGG + chr4_3:47737397-47737416 None:intergenic 40.0%
ACAGGATCTCAGTATTTGCA+TGG + chr4_3:47737398-47737417 None:intergenic 40.0%
ATCTTGCAGAATGGAAGAAC+AGG + chr4_3:47737416-47737435 None:intergenic 40.0%
AGGAAAGTGATCTTGCAGAA+TGG + chr4_3:47737425-47737444 None:intergenic 40.0%
GATCACTTTCCTAATCGTCT+TGG - chr4_3:47737433-47737452 Msa0644170:CDS 40.0%
! TATTGCCCAGACTTTTCTTC+AGG - chr4_3:47737495-47737514 Msa0644170:intron 40.0%
ATAAACGTGTTGCACAGACA+AGG + chr4_3:47737715-47737734 None:intergenic 40.0%
TCAACACTGCCATCATATCT+TGG - chr4_3:47737866-47737885 Msa0644170:intron 40.0%
ACTACGTCTACATCCAACTA+TGG - chr4_3:47738018-47738037 Msa0644170:intron 40.0%
CGGTCATCTAATACCATAGT+TGG + chr4_3:47738034-47738053 None:intergenic 40.0%
!! GGTCATAGTTGTTGCTTTGA+CGG + chr4_3:47738054-47738073 None:intergenic 40.0%
TCAAAGCAACAACTATGACC+AGG - chr4_3:47738054-47738073 Msa0644170:CDS 40.0%
!!! TTTTGGGTTGTCATAGCTCT+TGG - chr4_3:47738109-47738128 Msa0644170:CDS 40.0%
TTGTAGAGAACACCTCTAGT+AGG - chr4_3:47738199-47738218 Msa0644170:CDS 40.0%
TGTCTTTGTGAATTAGGAGG+TGG - chr4_3:47738225-47738244 Msa0644170:CDS 40.0%
! CATGATTCTGTAAAGAGCAC+AGG + chr4_3:47738429-47738448 None:intergenic 40.0%
CTGTGCTCTTTACAGAATCA+TGG - chr4_3:47738427-47738446 Msa0644170:five_prime_UTR 40.0%
ATGCGTCAATTATAGATGGC+TGG + chr4_3:47738503-47738522 None:intergenic 40.0%
CTCTCTCCCATATAAACCGA+AGG + chr4_3:47732988-47733007 None:intergenic 45.0%
CTTCGGTTTATATGGGAGAG+AGG - chr4_3:47732986-47733005 Msa0644170:three_prime_UTR 45.0%
CCATGCGTCAATGAAACAAG+GGG + chr4_3:47733138-47733157 None:intergenic 45.0%
CACCATGCGTCAATGAAACA+AGG + chr4_3:47733140-47733159 None:intergenic 45.0%
TCATTGACGCATGGTGACTT+TGG - chr4_3:47733144-47733163 Msa0644170:three_prime_UTR 45.0%
!! TTCAAAAGTGGGCTGTGTTC+AGG - chr4_3:47733313-47733332 Msa0644170:CDS 45.0%
!! TCAAAAGTGGGCTGTGTTCA+GGG - chr4_3:47733314-47733333 Msa0644170:CDS 45.0%
! GGGTTTGGTTAAAAGCATGC+AGG - chr4_3:47733335-47733354 Msa0644170:CDS 45.0%
GTAACCCACATAAAACGTCG+TGG + chr4_3:47733559-47733578 None:intergenic 45.0%
AACAGCCTTTACTGATGCAC+TGG - chr4_3:47733964-47733983 Msa0644170:CDS 45.0%
GATGCACTGGAATGTAGTGA+TGG - chr4_3:47733977-47733996 Msa0644170:CDS 45.0%
AAATTATCCTGCACAGGAGC+CGG + chr4_3:47734052-47734071 None:intergenic 45.0%
GATATGCAACAACCAAACCC+TGG - chr4_3:47734284-47734303 Msa0644170:CDS 45.0%
AGTAGTCGTTAGTAGTCTGG+TGG - chr4_3:47734849-47734868 Msa0644170:intron 45.0%
ACAAATGCATAAGAGCCCTC+CGG + chr4_3:47735427-47735446 None:intergenic 45.0%
! CAACCTTAGCCTTTCGATGT+TGG - chr4_3:47735509-47735528 Msa0644170:intron 45.0%
TTGACTTAGTCCTAGGCATG+AGG - chr4_3:47735743-47735762 Msa0644170:intron 45.0%
TGACTTAGTCCTAGGCATGA+GGG - chr4_3:47735744-47735763 Msa0644170:intron 45.0%
TCTCAAAACACACACAGGAC+TGG + chr4_3:47735813-47735832 None:intergenic 45.0%
TCGGATCTCAAAACACACAC+AGG + chr4_3:47735818-47735837 None:intergenic 45.0%
AAAACTTCAGGAGCTCTCTC+GGG + chr4_3:47736040-47736059 None:intergenic 45.0%
TCTACTCCTGTCTCCTTGTT+TGG - chr4_3:47736263-47736282 Msa0644170:intron 45.0%
! GGTCATCTGTACGCTCTTTT+TGG - chr4_3:47736446-47736465 Msa0644170:intron 45.0%
! ATTACTCACTTTGGAGGAGC+CGG - chr4_3:47736537-47736556 Msa0644170:intron 45.0%
CTTTATTCATCCCCAACTCG+GGG - chr4_3:47736650-47736669 Msa0644170:intron 45.0%
AGTACTTAATCCCCGAGTTG+GGG + chr4_3:47736663-47736682 None:intergenic 45.0%
CTTGGTTTCTTCTGTTGCAG+TGG - chr4_3:47736838-47736857 Msa0644170:intron 45.0%
TGCAGTGGACCATGATTTAG+TGG - chr4_3:47736853-47736872 Msa0644170:intron 45.0%
TCAAGAAGACAATACGCTGG+CGG - chr4_3:47736958-47736977 Msa0644170:intron 45.0%
CAGTAGAAGAGCTGGAAATG+TGG - chr4_3:47737000-47737019 Msa0644170:intron 45.0%
ACAGACCCTGTCTCATTGTA+AGG - chr4_3:47737060-47737079 Msa0644170:intron 45.0%
CCAAGCCTTACAATGAGACA+GGG + chr4_3:47737068-47737087 None:intergenic 45.0%
CCTGTCTCATTGTAAGGCTT+GGG - chr4_3:47737066-47737085 Msa0644170:intron 45.0%
CTAATTGCCTGAGCAAATCG+AGG + chr4_3:47737125-47737144 None:intergenic 45.0%
!! ACAGTATTGGTGGACTGTGA+AGG - chr4_3:47737352-47737371 Msa0644170:CDS 45.0%
GCAATAACACGAGCAATTGC+TGG + chr4_3:47737481-47737500 None:intergenic 45.0%
TCAATATTTGATGCGCCCCT+AGG + chr4_3:47737684-47737703 None:intergenic 45.0%
GGGCGCATCAAATATTGAAG+AGG - chr4_3:47737686-47737705 Msa0644170:intron 45.0%
ACACTGCCATCATATCTTGG+AGG - chr4_3:47737869-47737888 Msa0644170:intron 45.0%
AGAGTGCAACCTCATGAAAC+TGG - chr4_3:47737935-47737954 Msa0644170:intron 45.0%
GAGTGCAACCTCATGAAACT+GGG - chr4_3:47737936-47737955 Msa0644170:intron 45.0%
CAGCAGCAGCAGAATTGTTA+GGG - chr4_3:47737961-47737980 Msa0644170:intron 45.0%
GGATGATATCAGTGACAACG+AGG - chr4_3:47737985-47738004 Msa0644170:intron 45.0%
GTTGGATGTAGACGTAGTGA+TGG + chr4_3:47738016-47738035 None:intergenic 45.0%
ACGAACCTGGTGTGTAAGAT+TGG - chr4_3:47738143-47738162 Msa0644170:CDS 45.0%
TTTGGCCAATCTTACACACC+AGG + chr4_3:47738151-47738170 None:intergenic 45.0%
TGTGAATTAGGAGGTGGCAA+TGG - chr4_3:47738231-47738250 Msa0644170:CDS 45.0%
CACAGCTCAGCTGCAATAAA+AGG - chr4_3:47738293-47738312 Msa0644170:CDS 45.0%
GGTTTATATGGGAGAGAGGG+TGG - chr4_3:47732990-47733009 Msa0644170:three_prime_UTR 50.0%
! CCCCTTGTTTCATTGACGCA+TGG - chr4_3:47733135-47733154 Msa0644170:three_prime_UTR 50.0%
! TGACTTTGGAAGCAGTGCTG+TGG - chr4_3:47733158-47733177 Msa0644170:three_prime_UTR 50.0%
! GACTTTGGAAGCAGTGCTGT+GGG - chr4_3:47733159-47733178 Msa0644170:three_prime_UTR 50.0%
! ACTTTGGAAGCAGTGCTGTG+GGG - chr4_3:47733160-47733179 Msa0644170:three_prime_UTR 50.0%
AGAGTAGATGCCCTTGTGTC+TGG - chr4_3:47733241-47733260 Msa0644170:exon 50.0%
!! CAAAAGTGGGCTGTGTTCAG+GGG - chr4_3:47733315-47733334 Msa0644170:CDS 50.0%
ATGTGGGATCATCCAGGGTT+TGG + chr4_3:47734299-47734318 None:intergenic 50.0%
GAGTCAGCACTTGCATCAGT+TGG + chr4_3:47734722-47734741 None:intergenic 50.0%
!! TCCAACTTGGTGCACTTTGC+AGG - chr4_3:47734989-47735008 Msa0644170:intron 50.0%
TCCTGCAAAGTGCACCAAGT+TGG + chr4_3:47734993-47735012 None:intergenic 50.0%
! AGAGTCTAGCCGAGTCTTGT+TGG - chr4_3:47735016-47735035 Msa0644170:intron 50.0%
GGGTCAGCCCTGTACATTAT+CGG + chr4_3:47735484-47735503 None:intergenic 50.0%
GCACCAACATCGAAAGGCTA+AGG + chr4_3:47735515-47735534 None:intergenic 50.0%
GGTGACCCAATAACAGGTCT+TGG + chr4_3:47735703-47735722 None:intergenic 50.0%
GACTTAGTCCTAGGCATGAG+GGG - chr4_3:47735745-47735764 Msa0644170:intron 50.0%
AGAGCGTGGAAAATAGCAGG+TGG + chr4_3:47735784-47735803 None:intergenic 50.0%
CGTAGAGCGTGGAAAATAGC+AGG + chr4_3:47735787-47735806 None:intergenic 50.0%
!! TCTCGGGTTGACTGCGAAAA+AGG + chr4_3:47736024-47736043 None:intergenic 50.0%
GACTCAACTCAACGAAGAGC+TGG - chr4_3:47736078-47736097 Msa0644170:intron 50.0%
CAAGAAGACAATACGCTGGC+GGG - chr4_3:47736959-47736978 Msa0644170:intron 50.0%
CCCTGTCTCATTGTAAGGCT+TGG - chr4_3:47737065-47737084 Msa0644170:intron 50.0%
CCCAAGCCTTACAATGAGAC+AGG + chr4_3:47737069-47737088 None:intergenic 50.0%
! TGGGATAGCTTGCAGCACAT+TGG - chr4_3:47737085-47737104 Msa0644170:intron 50.0%
CAGCTGCCTCCAAGATATGA+TGG + chr4_3:47737878-47737897 None:intergenic 50.0%
CCTAACAATTCTGCTGCTGC+TGG + chr4_3:47737963-47737982 None:intergenic 50.0%
CCAGCAGCAGCAGAATTGTT+AGG - chr4_3:47737960-47737979 Msa0644170:intron 50.0%
CAGCAGCAGAATTGTTAGGG+AGG - chr4_3:47737964-47737983 Msa0644170:intron 50.0%
! GTTGTCATAGCTCTTGGTGC+TGG - chr4_3:47738115-47738134 Msa0644170:CDS 50.0%
AGATGCCCTTGTGTCTGGCA+AGG - chr4_3:47733246-47733265 Msa0644170:CDS 55.0%
GCAGACCTTGCCAGACACAA+GGG + chr4_3:47733254-47733273 None:intergenic 55.0%
TGCAGACCTTGCCAGACACA+AGG + chr4_3:47733255-47733274 None:intergenic 55.0%
TTGTGTCTGGCAAGGTCTGC+AGG - chr4_3:47733254-47733273 Msa0644170:CDS 55.0%
TGTGTCTGGCAAGGTCTGCA+GGG - chr4_3:47733255-47733274 Msa0644170:CDS 55.0%
!! GGGCCGTTTTCTGAGCATGT+TGG - chr4_3:47735246-47735265 Msa0644170:intron 55.0%
!! GCATGAGGGGTGTTCTCGTT+TGG - chr4_3:47735758-47735777 Msa0644170:intron 55.0%
GGAACCCTCATCCCTTGATC+TGG - chr4_3:47735878-47735897 Msa0644170:intron 55.0%
CTGCTGGTCCCAGTTTCATG+AGG + chr4_3:47737947-47737966 None:intergenic 55.0%
TGACAGCGGTTCTCAACACC+TGG + chr4_3:47738075-47738094 None:intergenic 55.0%
! GGTGCTGGAGTATACGAACC+TGG - chr4_3:47738130-47738149 Msa0644170:CDS 55.0%
! GTGGGCTGTGTTCAGGGGTT+TGG - chr4_3:47733320-47733339 Msa0644170:CDS 60.0%
CGAGAACACCCCTCATGCCT+AGG + chr4_3:47735756-47735775 None:intergenic 60.0%
AGGACTGGACACGTAGAGCG+TGG + chr4_3:47735798-47735817 None:intergenic 60.0%
CTGGTTGCGTCGCGTCCCAA+AGG - chr4_3:47733090-47733109 Msa0644170:three_prime_UTR 65.0%
! TGCTGAACCGGCTCCTGTGC+AGG - chr4_3:47734042-47734061 Msa0644170:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 47732862 47738543 47732862 ID=Msa0644170;Name=Msa0644170
chr4_3 mRNA 47732862 47738543 47732862 ID=Msa0644170-mRNA-1;Parent=Msa0644170;Name=Msa0644170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=135|1|1|1|1|1|6|384|484
chr4_3 exon 47732862 47733614 47732862 ID=Msa0644170-mRNA-1:exon:11337;Parent=Msa0644170-mRNA-1
chr4_3 exon 47733889 47734109 47733889 ID=Msa0644170-mRNA-1:exon:11336;Parent=Msa0644170-mRNA-1
chr4_3 exon 47734262 47734518 47734262 ID=Msa0644170-mRNA-1:exon:11335;Parent=Msa0644170-mRNA-1
chr4_3 exon 47735277 47735372 47735277 ID=Msa0644170-mRNA-1:exon:11334;Parent=Msa0644170-mRNA-1
chr4_3 exon 47737325 47737476 47737325 ID=Msa0644170-mRNA-1:exon:11333;Parent=Msa0644170-mRNA-1
chr4_3 exon 47738049 47738543 47738049 ID=Msa0644170-mRNA-1:exon:11332;Parent=Msa0644170-mRNA-1
chr4_3 five_prime_UTR 47738409 47738543 47738409 ID=Msa0644170-mRNA-1:five_prime_utr;Parent=Msa0644170-mRNA-1
chr4_3 CDS 47738049 47738408 47738049 ID=Msa0644170-mRNA-1:cds;Parent=Msa0644170-mRNA-1
chr4_3 CDS 47737325 47737476 47737325 ID=Msa0644170-mRNA-1:cds;Parent=Msa0644170-mRNA-1
chr4_3 CDS 47735277 47735372 47735277 ID=Msa0644170-mRNA-1:cds;Parent=Msa0644170-mRNA-1
chr4_3 CDS 47734262 47734518 47734262 ID=Msa0644170-mRNA-1:cds;Parent=Msa0644170-mRNA-1
chr4_3 CDS 47733889 47734109 47733889 ID=Msa0644170-mRNA-1:cds;Parent=Msa0644170-mRNA-1
chr4_3 CDS 47733246 47733614 47733246 ID=Msa0644170-mRNA-1:cds;Parent=Msa0644170-mRNA-1
chr4_3 three_prime_UTR 47732862 47733245 47732862 ID=Msa0644170-mRNA-1:three_prime_utr;Parent=Msa0644170-mRNA-1
Gene Sequence

>Msa0644170

ATGGGAGAGAGGGTGGATAAGTCTAGCTCGAGCATGAGCGCTAATTCTAAACAAAACAGTGCTATCACTGGGAAAAAAACGTACAAAAAACAGCTGGTTGCGTCGCGTCCCAAAGGCTTTGCACAAAGATATTGTGAACCCCTTGTTTCATTGACGCATGGTGACTTTGGAAGCAGTGCTGTGGGGCGTGCTGCATTTTGTTTAGTTAAAGTTGCTGCTTTAGAAGCTGTAAGGAGACTCACAAAGAGTAGATGCCCTTGTGTCTGGCAAGGTCTGCAGGGTCTACAAATCCTTGCCTACCCACCATTTAAATGGATTCAAAAGTGGGCTGTGTTCAGGGGTTTGGTTAAAAGCATGCAGGTACTATCAAGACCATTATTAGTTCTTTCCATTGCAACAGCCTTTACTGATGCACTGGAATGTAGTGATGGAACCTCAGATCATATTACTAATTCTCATGATTCAGAAATATCTGCTGAACCGGCTCCTGTGCAGGATAATTTGAATACTAGTCAACCCGAGAGAGCTCCTGAAGTTTTAGAATATGAAAAATGGTTGACTCAACTCAACGAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAGAATCAACGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTTTTCATGCTTCCTTACCTCAATCAAGAAGACAATACGCTGGCGGGAGTGTTACAAAATTCTTTCAGTAGAAGAGCTGGAAATGTGGTCAAATATGGTGTTCTGGCATGGATCTGATTTGTTGCACAGACCCTGTCTCATTGTAAGGCTTGGGATAGCTTGCAGCACATTGGCATCCCAAGATAAACCTCGATTTGCTCAGGCAATTATATCACAGGTAGAATATGGGGTCTTGCACTTTGTTGATAGAGAAAACCCTCAAATTACAGTATTGGTGGACTGTGAAGGCTTATCTCCATTGAGAATTCCCATGCAAATACTGAGATCCTGTTCTTCCATTCTGCAAGATCACTTTCCTAATCGTCTTGGTTGTTTGTTTGTCATACGACTTCCAGCAATTGCTCGTGTTATTGCCCAGACTTTTCTTCAGGTTTTAAAGCCAGCTACTAAGAAAAAGTTAAAGATAGAAGGAGAGATGTACAAGAAAGTTCTTATTGACAATCTATCAACACTGCCATCATATCTTGGAGGCAGCTGCACATGTGTGAATTGTTCTAAAATGGGCAAGCGGACTAGAGTGCAACCTCATGAAACTGGGACCAGCAGCAGCAGAATTGTTAGGGAGGATGATATCAGTGACAACGAGGATTCGCCATCACTACGTCTACATCCAACTATGGTATTAGATGACCGTCAAAGCAACAACTATGACCAGGTGTTGAGAACCGCTGTCATAAGTATTATCGTATTTTGGGTTGTCATAGCTCTTGGTGCTGGAGTATACGAACCTGGTGTGTAA

Protein sequence

>Msa0644170

MGERVDKSSSSMSANSKQNSAITGKKTYKKQLVASRPKGFAQRYCEPLVSLTHGDFGSSAVGRAAFCLVKVAALEAVRRLTKSRCPCVWQGLQGLQILAYPPFKWIQKWAVFRGLVKSMQVLSRPLLVLSIATAFTDALECSDGTSDHITNSHDSEISAEPAPVQDNLNTSQPERAPEVLEYEKWLTQLNEELENQGISLPERINDDELHRFYTASNNDFSCFLTSIKKTIRWRECYKILSVEELEMWSNMVFWHGSDLLHRPCLIVRLGIACSTLASQDKPRFAQAIISQVEYGVLHFVDRENPQITVLVDCEGLSPLRIPMQILRSCSSILQDHFPNRLGCLFVIRLPAIARVIAQTFLQVLKPATKKKLKIEGEMYKKVLIDNLSTLPSYLGGSCTCVNCSKMGKRTRVQPHETGTSSSRIVREDDISDNEDSPSLRLHPTMVLDDRQSNNYDQVLRTAVISIIVFWVVIALGAGVYEPGV*