Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548120 | XP_013456085.1 | 95.868 | 484 | 20 | 0 | 1 | 484 | 1 | 484 | 0.0 | 970 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548120 | sp|Q10137|SEC14_SCHPO | 26.966 | 267 | 171 | 7 | 155 | 400 | 2 | 265 | 1.03e-13 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548120 | A0A072UL27 | 95.868 | 484 | 20 | 0 | 1 | 484 | 1 | 484 | 0.0 | 970 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000910 | Msa0548120 | 0.820570 | 6.396143e-53 | -8.615850e-47 |
| Msa0028620 | Msa0548120 | 0.842465 | 2.544158e-58 | -8.615850e-47 |
| Msa0051020 | Msa0548120 | 0.802928 | 4.444115e-49 | -8.615850e-47 |
| Msa0051740 | Msa0548120 | 0.800164 | 1.638329e-48 | -8.615850e-47 |
| Msa0053860 | Msa0548120 | 0.801833 | 7.470582e-49 | -8.615850e-47 |
| Msa0054820 | Msa0548120 | 0.820139 | 8.029528e-53 | -8.615850e-47 |
| Msa0072340 | Msa0548120 | 0.809436 | 1.893812e-50 | -8.615850e-47 |
| Msa0072720 | Msa0548120 | 0.805229 | 1.476667e-49 | -8.615850e-47 |
| Msa0076290 | Msa0548120 | 0.817603 | 3.027145e-52 | -8.615850e-47 |
| Msa0089980 | Msa0548120 | 0.822332 | 2.506701e-53 | -8.615850e-47 |
| Msa0090010 | Msa0548120 | 0.820827 | 5.583100e-53 | -8.615850e-47 |
| Msa0100160 | Msa0548120 | 0.817264 | 3.608553e-52 | -8.615850e-47 |
| Msa0101250 | Msa0548120 | 0.807517 | 4.862783e-50 | -8.615850e-47 |
| Msa0104670 | Msa0548120 | 0.800764 | 1.236614e-48 | -8.615850e-47 |
| Msa0106620 | Msa0548120 | 0.815112 | 1.092460e-51 | -8.615850e-47 |
| Msa0106710 | Msa0548120 | 0.803745 | 3.010377e-49 | -8.615850e-47 |
| Msa0115560 | Msa0548120 | 0.803653 | 3.145598e-49 | -8.615850e-47 |
| Msa0124320 | Msa0548120 | 0.840400 | 8.894532e-58 | -8.615850e-47 |
| Msa0141400 | Msa0548120 | 0.804594 | 2.004270e-49 | -8.615850e-47 |
| Msa0150170 | Msa0548120 | 0.805263 | 1.452182e-49 | -8.615850e-47 |
| Msa0163930 | Msa0548120 | 0.802433 | 5.623497e-49 | -8.615850e-47 |
| Msa0168690 | Msa0548120 | 0.802508 | 5.425932e-49 | -8.615850e-47 |
| Msa0173800 | Msa0548120 | 0.803272 | 3.773986e-49 | -8.615850e-47 |
| Msa0189710 | Msa0548120 | 0.823415 | 1.402111e-53 | -8.615850e-47 |
| Msa0198300 | Msa0548120 | 0.813770 | 2.162869e-51 | -8.615850e-47 |
| Msa0225220 | Msa0548120 | 0.805342 | 1.398104e-49 | -8.615850e-47 |
| Msa0232020 | Msa0548120 | 0.825854 | 3.735952e-54 | -8.615850e-47 |
| Msa0232090 | Msa0548120 | 0.818855 | 1.576558e-52 | -8.615850e-47 |
| Msa0234090 | Msa0548120 | 0.808796 | 2.596893e-50 | -8.615850e-47 |
| Msa0237200 | Msa0548120 | 0.801623 | 8.251331e-49 | -8.615850e-47 |
| Msa0237210 | Msa0548120 | 0.809598 | 1.748406e-50 | -8.615850e-47 |
| Msa0367870 | Msa0548120 | 0.800516 | 1.389503e-48 | -8.615850e-47 |
| Msa0374350 | Msa0548120 | 0.802166 | 6.382948e-49 | -8.615850e-47 |
| Msa0374430 | Msa0548120 | 0.812663 | 3.784850e-51 | -8.615850e-47 |
| Msa0378970 | Msa0548120 | 0.814429 | 1.547621e-51 | -8.615850e-47 |
| Msa0382310 | Msa0548120 | 0.800687 | 1.282134e-48 | -8.615850e-47 |
| Msa0382370 | Msa0548120 | 0.802453 | 5.570521e-49 | -8.615850e-47 |
| Msa0395980 | Msa0548120 | 0.816633 | 5.000536e-52 | -8.615850e-47 |
| Msa0428580 | Msa0548120 | 0.825738 | 3.980140e-54 | -8.615850e-47 |
| Msa0432160 | Msa0548120 | 0.822686 | 2.074185e-53 | -8.615850e-47 |
| Msa0440510 | Msa0548120 | 0.814147 | 1.786468e-51 | -8.615850e-47 |
| Msa0450400 | Msa0548120 | -0.800128 | 1.666592e-48 | -8.615850e-47 |
| Msa0464390 | Msa0548120 | 0.829071 | 6.320077e-55 | -8.615850e-47 |
| Msa0474940 | Msa0548120 | 0.826132 | 3.208228e-54 | -8.615850e-47 |
| Msa0476680 | Msa0548120 | 0.822662 | 2.100946e-53 | -8.615850e-47 |
| Msa0480780 | Msa0548120 | 0.800198 | 1.612442e-48 | -8.615850e-47 |
| Msa0240650 | Msa0548120 | 0.811390 | 7.170891e-51 | -8.615850e-47 |
| Msa0274970 | Msa0548120 | 0.807304 | 5.395422e-50 | -8.615850e-47 |
| Msa0274980 | Msa0548120 | 0.810823 | 9.515319e-51 | -8.615850e-47 |
| Msa0287790 | Msa0548120 | 0.818178 | 2.244110e-52 | -8.615850e-47 |
| Msa0287870 | Msa0548120 | 0.819689 | 1.018123e-52 | -8.615850e-47 |
| Msa0288010 | Msa0548120 | -0.810547 | 1.091593e-50 | -8.615850e-47 |
| Msa0310090 | Msa0548120 | 0.819333 | 1.226925e-52 | -8.615850e-47 |
| Msa0315680 | Msa0548120 | 0.810356 | 1.200592e-50 | -8.615850e-47 |
| Msa0315690 | Msa0548120 | 0.815891 | 7.326383e-52 | -8.615850e-47 |
| Msa0342010 | Msa0548120 | 0.815476 | 9.067684e-52 | -8.615850e-47 |
| Msa0362890 | Msa0548120 | 0.808789 | 2.605739e-50 | -8.615850e-47 |
| Msa0363790 | Msa0548120 | 0.803726 | 3.037685e-49 | -8.615850e-47 |
| Msa0482940 | Msa0548120 | 0.802935 | 4.429511e-49 | -8.615850e-47 |
| Msa0491000 | Msa0548120 | 0.803187 | 3.928863e-49 | -8.615850e-47 |
| Msa0521010 | Msa0548120 | 0.822849 | 1.901187e-53 | -8.615850e-47 |
| Msa0527540 | Msa0548120 | 0.804938 | 1.698838e-49 | -8.615850e-47 |
| Msa0548120 | Msa0572750 | 0.813910 | 2.014775e-51 | -8.615850e-47 |
| Msa0548120 | Msa0583360 | -0.802066 | 6.690908e-49 | -8.615850e-47 |
| Msa0548120 | Msa0594050 | 0.801915 | 7.186990e-49 | -8.615850e-47 |
| Msa0548120 | Msa0603140 | 0.987019 | 9.021505e-169 | -8.615850e-47 |
| Msa0548120 | Msa0607320 | 0.802827 | 4.663702e-49 | -8.615850e-47 |
| Msa0548120 | Msa0614780 | 0.805146 | 1.537037e-49 | -8.615850e-47 |
| Msa0548120 | Msa0620230 | 0.800525 | 1.383764e-48 | -8.615850e-47 |
| Msa0548120 | Msa0623990 | 0.810846 | 9.408433e-51 | -8.615850e-47 |
| Msa0548120 | Msa0624060 | 0.830836 | 2.346388e-55 | -8.615850e-47 |
| Msa0548120 | Msa0644170 | 0.938921 | 3.017179e-99 | -8.615850e-47 |
| Msa0548120 | Msa0647030 | 0.801772 | 7.690824e-49 | -8.615850e-47 |
| Msa0548120 | Msa0651560 | 0.825708 | 4.046394e-54 | -8.615850e-47 |
| Msa0548120 | Msa0652690 | 0.815264 | 1.010536e-51 | -8.615850e-47 |
| Msa0548120 | Msa0664540 | 0.809222 | 2.104657e-50 | -8.615850e-47 |
| Msa0548120 | Msa0673120 | 0.803367 | 3.605596e-49 | -8.615850e-47 |
| Msa0548120 | Msa0676130 | 0.830131 | 3.490777e-55 | -8.615850e-47 |
| Msa0548120 | Msa0676180 | 0.837487 | 5.049032e-57 | -8.615850e-47 |
| Msa0548120 | Msa0683980 | 0.924560 | 5.985952e-90 | -8.615850e-47 |
| Msa0548120 | Msa0697590 | 0.804702 | 1.902619e-49 | -8.615850e-47 |
| Msa0548120 | Msa0763890 | 0.802557 | 5.300878e-49 | -8.615850e-47 |
| Msa0548120 | Msa0763920 | 0.811595 | 6.471002e-51 | -8.615850e-47 |
| Msa0548120 | Msa0784480 | 0.824718 | 6.933472e-54 | -8.615850e-47 |
| Msa0548120 | Msa0796250 | 0.840506 | 8.345507e-58 | -8.615850e-47 |
| Msa0548120 | Msa0796300 | 0.823739 | 1.177727e-53 | -8.615850e-47 |
| Msa0548120 | Msa0797770 | 0.808959 | 2.396406e-50 | -8.615850e-47 |
| Msa0548120 | Msa0818060 | 0.825103 | 5.626346e-54 | -8.615850e-47 |
| Msa0548120 | Msa0835230 | 0.803884 | 2.817393e-49 | -8.615850e-47 |
| Msa0548120 | Msa0837890 | 0.810026 | 1.414273e-50 | -8.615850e-47 |
| Msa0548120 | Msa0855870 | 0.832223 | 1.068740e-55 | -8.615850e-47 |
| Msa0548120 | Msa0858390 | 0.809385 | 1.942632e-50 | -8.615850e-47 |
| Msa0548120 | Msa0880450 | 0.805746 | 1.150080e-49 | -8.615850e-47 |
| Msa0548120 | Msa0899970 | 0.862295 | 5.607316e-64 | -8.615850e-47 |
| Msa0548120 | Msa0933760 | 0.821873 | 3.202227e-53 | -8.615850e-47 |
| Msa0548120 | Msa0934140 | 0.805137 | 1.543101e-49 | -8.615850e-47 |
| Msa0548120 | Msa0945240 | 0.805292 | 1.432322e-49 | -8.615850e-47 |
| Msa0548120 | Msa0958030 | 0.813044 | 3.124184e-51 | -8.615850e-47 |
| Msa0548120 | Msa0965080 | 0.858961 | 5.749371e-63 | -8.615850e-47 |
| Msa0548120 | Msa0965290 | 0.870394 | 1.508170e-66 | -8.615850e-47 |
| Msa0548120 | Msa0986510 | 0.802808 | 4.705405e-49 | -8.615850e-47 |
| Msa0548120 | Msa0992580 | 0.811816 | 5.794627e-51 | -8.615850e-47 |
| Msa0548120 | Msa0999680 | 0.869010 | 4.262903e-66 | -8.615850e-47 |
| Msa0548120 | Msa1002960 | 0.817123 | 3.881989e-52 | -8.615850e-47 |
| Msa0548120 | Msa1034500 | 0.826194 | 3.101599e-54 | -8.615850e-47 |
| Msa0548120 | Msa1036300 | 0.816915 | 4.322517e-52 | -8.615850e-47 |
| Msa0548120 | Msa1088410 | 0.818600 | 1.801143e-52 | -8.615850e-47 |
| Msa0548120 | Msa1111380 | 0.804142 | 2.489791e-49 | -8.615850e-47 |
| Msa0548120 | Msa1133590 | 0.808685 | 2.743305e-50 | -8.615850e-47 |
| Msa0548120 | Msa1137780 | 0.806216 | 9.160661e-50 | -8.615850e-47 |
| Msa0548120 | Msa1145810 | 0.819488 | 1.131104e-52 | -8.615850e-47 |
| Msa0548120 | Msa1161810 | 0.802726 | 4.892516e-49 | -8.615850e-47 |
| Msa0548120 | Msa1183890 | 0.804520 | 2.077091e-49 | -8.615850e-47 |
| Msa0548120 | Msa1188180 | 0.809816 | 1.569655e-50 | -8.615850e-47 |
| Msa0548120 | Msa1222670 | 0.828046 | 1.117325e-54 | -8.615850e-47 |
| Msa0548120 | Msa1225860 | -0.805794 | 1.123763e-49 | -8.615850e-47 |
| Msa0548120 | Msa1226460 | 0.800766 | 1.235583e-48 | -8.615850e-47 |
| Msa0548120 | Msa1236360 | 0.804137 | 2.495792e-49 | -8.615850e-47 |
| Msa0548120 | Msa1236440 | 0.821341 | 4.251143e-53 | -8.615850e-47 |
| Msa0548120 | Msa1250530 | 0.805966 | 1.034361e-49 | -8.615850e-47 |
| Msa0548120 | Msa1264620 | 0.816401 | 5.635273e-52 | -8.615850e-47 |
| Msa0548120 | Msa1277670 | 0.815961 | 7.070210e-52 | -8.615850e-47 |
| Msa0548120 | Msa1283740 | 0.801663 | 8.095753e-49 | -8.615850e-47 |
| Msa0548120 | Msa1308870 | 0.808860 | 2.516798e-50 | -8.615850e-47 |
| Msa0548120 | Msa1325410 | -0.812359 | 4.412366e-51 | -8.615850e-47 |
| Msa0548120 | Msa1328640 | 0.800459 | 1.426946e-48 | -8.615850e-47 |
| Msa0548120 | Msa1340200 | 0.825438 | 4.688408e-54 | -8.615850e-47 |
| Msa0548120 | Msa1359560 | 0.811772 | 5.924064e-51 | -8.615850e-47 |
| Msa0548120 | Msa1365350 | 0.805138 | 1.542644e-49 | -8.615850e-47 |
| Msa0548120 | Msa1366550 | 0.811905 | 5.540578e-51 | -8.615850e-47 |
| Msa0548120 | Msa1369920 | -0.813590 | 2.369605e-51 | -8.615850e-47 |
| Msa0548120 | Msa1373850 | 0.819473 | 1.140117e-52 | -8.615850e-47 |
| Msa0548120 | Msa1378410 | 0.838180 | 3.351619e-57 | -8.615850e-47 |
| Msa0548120 | Msa1384100 | 0.801603 | 8.330223e-49 | -8.615850e-47 |
| Msa0548120 | Msa1398370 | 0.828672 | 7.891452e-55 | -8.615850e-47 |
| Msa0548120 | Msa1414420 | 0.805262 | 1.452914e-49 | -8.615850e-47 |
| Msa0548120 | Msa1433700 | 0.814080 | 1.848109e-51 | -8.615850e-47 |
| Msa0548120 | Msa1442920 | 0.822161 | 2.746927e-53 | -8.615850e-47 |
| Msa0548120 | Msa1444120 | 0.806464 | 8.121490e-50 | -8.615850e-47 |
| Msa0548120 | Msa1448560 | 0.800206 | 1.606744e-48 | -8.615850e-47 |
| Msa0548120 | Msa1452710 | 0.816423 | 5.573437e-52 | -8.615850e-47 |
| Msa0548120 | Msa1458680 | 0.818987 | 1.471139e-52 | -8.615850e-47 |
| Msa0548120 | Msa1463030 | 0.829665 | 4.533931e-55 | -8.615850e-47 |
| Msa0548120 | Msa1463900 | 0.804151 | 2.479296e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548120 | MtrunA17_Chr4g0031141 | 95.868 | 484 | 20 | 0 | 1 | 484 | 1 | 484 | 0.0 | 970 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548120 | AT3G46450.1 | 50.308 | 487 | 231 | 5 | 1 | 482 | 1 | 481 | 4.67e-162 | 468 |
| Msa0548120 | AT3G46450.3 | 50.308 | 487 | 231 | 5 | 1 | 482 | 1 | 481 | 4.67e-162 | 468 |
| Msa0548120 | AT3G46450.2 | 49.495 | 495 | 231 | 6 | 1 | 482 | 1 | 489 | 6.56e-159 | 460 |
Find 145 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAAGTATTATCGTATTT+TGG | 0.089032 | 4_1:-41832872 | Msa0548120:CDS |
| CAATAAAAGGTGTGTGTTTA+TGG | 0.148166 | 4_1:-41832658 | Msa0548120:three_prime_UTR |
| TGAATTGCCTTCGGTTTATA+TGG | 0.190483 | 4_1:-41837981 | Msa0548120:exon |
| AGGATTTGTCTTTGTGAATT+AGG | 0.190565 | 4_1:-41832745 | Msa0548120:three_prime_UTR |
| CACAAAACCAAATACCTTTC+TGG | 0.191441 | 4_1:+41834842 | None:intergenic |
| ACTAGGGAAGTAAACTAATT+TGG | 0.199029 | 4_1:+41832798 | None:intergenic |
| TTGCCTACCCACCATTTAAA+TGG | 0.217975 | 4_1:-41837670 | Msa0548120:CDS |
| ATGTGTGAATTGTTCTAAAA+TGG | 0.228006 | 4_1:-41833063 | Msa0548120:CDS |
| AACATCTAATATAGTTATTT+AGG | 0.231674 | 4_1:+41832585 | None:intergenic |
| TTCAAAAGTGGGCTGTGTTC+AGG | 0.251395 | 4_1:-41837646 | Msa0548120:CDS |
| TCAGTATCACAGGTAGAATA+TGG | 0.282203 | 4_1:-41833672 | Msa0548120:intron |
| TTGTGTCTGGCAAGGTCTGC+AGG | 0.284744 | 4_1:-41837705 | Msa0548120:CDS |
| CACAGCTCAGCTGCAATAAA+AGG | 0.287535 | 4_1:-41832671 | Msa0548120:three_prime_UTR |
| CCAGCAGCAGCAGAATTGTT+AGG | 0.345640 | 4_1:-41833004 | Msa0548120:CDS |
| ATATCTTTGTGCAAAGCCTT+TGG | 0.349948 | 4_1:+41837853 | None:intergenic |
| TTCATCTTTCTCCACAAATC+AGG | 0.350899 | 4_1:-41838900 | Msa0548120:intron |
| AGAGTGCAACCTCATGAAAC+TGG | 0.353698 | 4_1:-41833029 | Msa0548120:CDS |
| AGATAAAATATCTCTAGTTT+TGG | 0.358304 | 4_1:-41832698 | Msa0548120:three_prime_UTR |
| GTGGGCTGTGTTCAGGGGTT+TGG | 0.370104 | 4_1:-41837639 | Msa0548120:CDS |
| GCAATGGAAAGAACTAATAA+TGG | 0.372345 | 4_1:+41837018 | None:intergenic |
| GAGCAAATCGAGGTTTATCT+TGG | 0.375243 | 4_1:+41833852 | None:intergenic |
| TATCTTTGTGCAAAGCCTTT+GGG | 0.386982 | 4_1:+41837854 | None:intergenic |
| AATAAAAGGTGTGTGTTTAT+GGG | 0.388612 | 4_1:-41832657 | Msa0548120:three_prime_UTR |
| ACTACGTCTACATCCAACTA+TGG | 0.397066 | 4_1:-41832946 | Msa0548120:CDS |
| CCCTGTCTCATTGTAAGGCT+TGG | 0.403991 | 4_1:-41833899 | Msa0548120:CDS |
| TGTGGTCAAATATGGTGTTC+TGG | 0.416093 | 4_1:-41833946 | Msa0548120:CDS |
| AGATTACCTGAAGAAAAGTC+TGG | 0.416322 | 4_1:+41833463 | None:intergenic |
| AGAGTAGATGCCCTTGTGTC+TGG | 0.419220 | 4_1:-41837718 | Msa0548120:CDS |
| ACAGACCCTGTCTCATTGTA+AGG | 0.420449 | 4_1:-41833904 | Msa0548120:CDS |
| ATCTTGCAGAATGGAAGAAC+AGG | 0.423646 | 4_1:+41833551 | None:intergenic |
| GGTCATAGTTGTTGCTTTGA+CGG | 0.427086 | 4_1:+41832913 | None:intergenic |
| GTTGTCATAGCTCTTGGTGC+TGG | 0.427292 | 4_1:-41832849 | Msa0548120:CDS |
| TGCTGAACCGGCTCCTGTGC+AGG | 0.432616 | 4_1:-41836917 | Msa0548120:CDS |
| CAGAGAAACTGAATTGCCTT+CGG | 0.435592 | 4_1:-41837990 | Msa0548120:five_prime_UTR |
| TTCAGAAATATCTGCTGAAC+CGG | 0.436907 | 4_1:-41836929 | Msa0548120:CDS |
| TCAACACTGCCATCATATCT+TGG | 0.436939 | 4_1:-41833098 | Msa0548120:CDS |
| GCAATAACACGAGCAATTGC+TGG | 0.437422 | 4_1:+41833486 | None:intergenic |
| GCTGGAAATGTGGTCAAATA+TGG | 0.437920 | 4_1:-41833954 | Msa0548120:CDS |
| TCAAAAGTGGGCTGTGTTCA+GGG | 0.438998 | 4_1:-41837645 | Msa0548120:CDS |
| ACGAACCTGGTGTGTAAGAT+AGG | 0.440467 | 4_1:-41832821 | Msa0548120:exon |
| GAACATGCGTCAATTATAGA+TGG | 0.444032 | 4_1:+41832460 | None:intergenic |
| CTGTGCTCTTTACAGAATCA+TGG | 0.444767 | 4_1:-41832537 | Msa0548120:three_prime_UTR |
| GAATTGCCTTCGGTTTATAT+GGG | 0.445226 | 4_1:-41837980 | Msa0548120:exon |
| TGAAAAGTTAACCTGATTTG+TGG | 0.446302 | 4_1:+41838889 | None:intergenic |
| CCTAACAATTCTGCTGCTGC+TGG | 0.448203 | 4_1:+41833004 | None:intergenic |
| AACAAACAACCAAGACGATT+AGG | 0.448537 | 4_1:+41833522 | None:intergenic |
| CCTGTCTCATTGTAAGGCTT+GGG | 0.451557 | 4_1:-41833898 | Msa0548120:CDS |
| CCCTCAAATTACAGTATTGG+TGG | 0.455195 | 4_1:-41833622 | Msa0548120:CDS |
| CAGTATCACAGGTAGAATAT+GGG | 0.455947 | 4_1:-41833671 | Msa0548120:CDS |
| AAGGGATTAGTTTGCCAGAA+AGG | 0.456937 | 4_1:-41834856 | Msa0548120:intron |
| GACTTTGGAAGCAGTGCTGT+GGG | 0.461131 | 4_1:-41837800 | Msa0548120:CDS |
| TAAAACTTCAGGAGCTCTCT+CGG | 0.463316 | 4_1:+41834925 | None:intergenic |
| TTGTAGAGAACACCTCTAGT+AGG | 0.473771 | 4_1:-41832765 | Msa0548120:three_prime_UTR |
| TGCAGGATAATTTGAATACT+AGG | 0.474906 | 4_1:-41836900 | Msa0548120:intron |
| CCCAAGCCTTACAATGAGAC+AGG | 0.475196 | 4_1:+41833898 | None:intergenic |
| CATTTAAATGGATTCAAAAG+TGG | 0.478870 | 4_1:-41837658 | Msa0548120:CDS |
| AAATTATCCTGCACAGGAGC+CGG | 0.479392 | 4_1:+41836910 | None:intergenic |
| CCACCAATACTGTAATTTGA+GGG | 0.482481 | 4_1:+41833622 | None:intergenic |
| CGGTCATCTAATACCATAGT+TGG | 0.485418 | 4_1:+41832933 | None:intergenic |
| TTGCTGCTTTAGAAGCTGTA+AGG | 0.485821 | 4_1:-41837751 | Msa0548120:CDS |
| TCCACCAATACTGTAATTTG+AGG | 0.487804 | 4_1:+41833621 | None:intergenic |
| CTACAAATTTATTTCAACTA+GGG | 0.489309 | 4_1:+41832782 | None:intergenic |
| AAACCCTCAAATTACAGTAT+TGG | 0.490708 | 4_1:-41833625 | Msa0548120:CDS |
| AACGAAGAGCTGGAAAATCA+AGG | 0.492588 | 4_1:-41834875 | Msa0548120:CDS |
| GCGTATTGTCTTCTTGATTG+AGG | 0.494104 | 4_1:+41834012 | None:intergenic |
| AAACAAAACAGTGCTATCAC+TGG | 0.494792 | 4_1:-41837914 | Msa0548120:CDS |
| GATCACTTTCCTAATCGTCT+TGG | 0.495856 | 4_1:-41833531 | Msa0548120:CDS |
| TGTGTGAATTGTTCTAAAAT+GGG | 0.496722 | 4_1:-41833062 | Msa0548120:CDS |
| CAGCAGCAGCAGAATTGTTA+GGG | 0.497606 | 4_1:-41833003 | Msa0548120:CDS |
| TGTGTCTGGCAAGGTCTGCA+GGG | 0.502343 | 4_1:-41837704 | Msa0548120:CDS |
| ATTTGCATGGGAATTCTCAA+TGG | 0.503124 | 4_1:+41833582 | None:intergenic |
| AATTCTTACAGTAGAAGAGC+TGG | 0.508630 | 4_1:-41833972 | Msa0548120:CDS |
| GACTCAACTCAACGAAGAGC+TGG | 0.511333 | 4_1:-41834885 | Msa0548120:CDS |
| ATTTAAATGGATTCAAAAGT+GGG | 0.513377 | 4_1:-41837657 | Msa0548120:CDS |
| GATCTTTGCTTCAGTATCAC+AGG | 0.515027 | 4_1:-41833682 | Msa0548120:intron |
| AGCAAATCGAGGTTTATCTT+GGG | 0.515766 | 4_1:+41833853 | None:intergenic |
| AAAACTTCAGGAGCTCTCTC+GGG | 0.516604 | 4_1:+41834926 | None:intergenic |
| CAAGAAGACAATACGCTGGC+GGG | 0.519577 | 4_1:-41834005 | Msa0548120:CDS |
| TGTCTTTGTGAATTAGGAGG+TGG | 0.521353 | 4_1:-41832739 | Msa0548120:three_prime_UTR |
| TCTACAAATTTATTTCAACT+AGG | 0.523383 | 4_1:+41832781 | None:intergenic |
| TGCAGACCTTGCCAGACACA+AGG | 0.523801 | 4_1:+41837707 | None:intergenic |
| TTTAGTTGAAGTTGTTTAGA+CGG | 0.524035 | 4_1:+41838944 | None:intergenic |
| CACCATGCGTCAATGAAACA+AGG | 0.525789 | 4_1:+41837822 | None:intergenic |
| AGATAAACCTCGATTTGCTC+AGG | 0.528310 | 4_1:-41833849 | Msa0548120:CDS |
| ATTTAAATGGTGGGTAGGCA+AGG | 0.528331 | 4_1:+41837672 | None:intergenic |
| AACAGCCTTTACTGATGCAC+TGG | 0.530440 | 4_1:-41836995 | Msa0548120:CDS |
| TTGTCTTCTTGATTGAGGTA+AGG | 0.532061 | 4_1:+41834017 | None:intergenic |
| AATCCATTTAAATGGTGGGT+AGG | 0.532716 | 4_1:+41837667 | None:intergenic |
| TTTGAATCCATTTAAATGGT+GGG | 0.533081 | 4_1:+41837663 | None:intergenic |
| TCAAATATGGTGTTCTGGCA+TGG | 0.535129 | 4_1:-41833941 | Msa0548120:CDS |
| ACATTCCAGTGCATCAGTAA+AGG | 0.536622 | 4_1:+41836990 | None:intergenic |
| TCATTGACGCATGGTGACTT+TGG | 0.537854 | 4_1:-41837815 | Msa0548120:CDS |
| GTATTCAAATTATCCTGCAC+AGG | 0.542724 | 4_1:+41836904 | None:intergenic |
| ATGCGTCAATTATAGATGGC+TGG | 0.544307 | 4_1:+41832464 | None:intergenic |
| CTTCGGTTTATATGGGAGAG+AGG | 0.544472 | 4_1:-41837973 | Msa0548120:exon |
| ACAGGATCTCAGTATTTGCA+TGG | 0.546008 | 4_1:+41833569 | None:intergenic |
| GGGTTTGGTTAAAAGCATGC+AGG | 0.548426 | 4_1:-41837624 | Msa0548120:intron |
| CTGCTGGTCCCAGTTTCATG+AGG | 0.549096 | 4_1:+41833020 | None:intergenic |
| GTTATCTAGTAGTATCTACA+TGG | 0.551136 | 4_1:-41832565 | Msa0548120:three_prime_UTR |
| CAAAAGTGGGCTGTGTTCAG+GGG | 0.551310 | 4_1:-41837644 | Msa0548120:CDS |
| CATGATTCTGTAAAGAGCAC+AGG | 0.554370 | 4_1:+41832538 | None:intergenic |
| ATTTGTCTTTGTGAATTAGG+AGG | 0.559115 | 4_1:-41832742 | Msa0548120:three_prime_UTR |
| CTGGTTGCGTCGCGTCCCAA+AGG | 0.563821 | 4_1:-41837869 | Msa0548120:CDS |
| CAGCTGCCTCCAAGATATGA+TGG | 0.565306 | 4_1:+41833089 | None:intergenic |
| AGATGCCCTTGTGTCTGGCA+AGG | 0.565370 | 4_1:-41837713 | Msa0548120:CDS |
| TTCGGTTTATATGGGAGAGA+GGG | 0.566140 | 4_1:-41837972 | Msa0548120:exon |
| ATCAGTAAAGGCTGTTGCAA+TGG | 0.567300 | 4_1:+41837002 | None:intergenic |
| TGACTTTGGAAGCAGTGCTG+TGG | 0.568986 | 4_1:-41837801 | Msa0548120:CDS |
| GGTTTATATGGGAGAGAGGG+TGG | 0.571830 | 4_1:-41837969 | Msa0548120:exon |
| ACGAAGAGCTGGAAAATCAA+GGG | 0.572330 | 4_1:-41834874 | Msa0548120:CDS |
| TGTGAATTAGGAGGTGGCAA+TGG | 0.572346 | 4_1:-41832733 | Msa0548120:three_prime_UTR |
| CCCCTTGTTTCATTGACGCA+TGG | 0.577087 | 4_1:-41837824 | Msa0548120:CDS |
| AGGAAAGTGATCTTGCAGAA+TGG | 0.579301 | 4_1:+41833542 | None:intergenic |
| ACACTGCCATCATATCTTGG+AGG | 0.583075 | 4_1:-41833095 | Msa0548120:CDS |
| ACAGTATTGGTGGACTGTGA+AGG | 0.583388 | 4_1:-41833612 | Msa0548120:CDS |
| TGGGATAGCTTGCAGCACAT+TGG | 0.587085 | 4_1:-41833879 | Msa0548120:CDS |
| GATTACCTGAAGAAAAGTCT+GGG | 0.589318 | 4_1:+41833464 | None:intergenic |
| AACAAAACAGTGCTATCACT+GGG | 0.597539 | 4_1:-41837913 | Msa0548120:CDS |
| CTCTCTCCCATATAAACCGA+AGG | 0.598494 | 4_1:+41837974 | None:intergenic |
| TAGAAGCTGTGTAAAATCTG+TGG | 0.605768 | 4_1:+41834059 | None:intergenic |
| CAGGATCTCAGTATTTGCAT+GGG | 0.606115 | 4_1:+41833570 | None:intergenic |
| CAGTAGAAGAGCTGGAAATG+TGG | 0.608308 | 4_1:-41833964 | Msa0548120:CDS |
| TTTGGCCTATCTTACACACC+AGG | 0.609676 | 4_1:+41832816 | None:intergenic |
| AGAATTAGTAATATGATCTG+AGG | 0.616840 | 4_1:+41836957 | None:intergenic |
| TGACAGCGGTTCTCAACACC+TGG | 0.616965 | 4_1:+41832892 | None:intergenic |
| GAGTGCAACCTCATGAAACT+GGG | 0.622128 | 4_1:-41833028 | Msa0548120:CDS |
| CCAAGCCTTACAATGAGACA+GGG | 0.623318 | 4_1:+41833899 | None:intergenic |
| GTTGGATGTAGACGTAGTGA+TGG | 0.623773 | 4_1:+41832951 | None:intergenic |
| AGTATCACAGGTAGAATATG+GGG | 0.625550 | 4_1:-41833670 | Msa0548120:CDS |
| GGTGCTGGAGTATACGAACC+TGG | 0.628612 | 4_1:-41832834 | Msa0548120:CDS |
| GCAGACCTTGCCAGACACAA+GGG | 0.633261 | 4_1:+41837708 | None:intergenic |
| CTAATTGCCTGAGCAAATCG+AGG | 0.635399 | 4_1:+41833842 | None:intergenic |
| ACCATGCGTCAATGAAACAA+GGG | 0.635590 | 4_1:+41837823 | None:intergenic |
| CAGCAGCAGAATTGTTAGGG+AGG | 0.639469 | 4_1:-41833000 | Msa0548120:CDS |
| GATGCACTGGAATGTAGTGA+TGG | 0.651523 | 4_1:-41836982 | Msa0548120:CDS |
| ACAAAGACAAATCCTACTAG+AGG | 0.653155 | 4_1:+41832753 | None:intergenic |
| TCAAGAAGACAATACGCTGG+CGG | 0.653895 | 4_1:-41834006 | Msa0548120:CDS |
| TCAAAGCAACAACTATGACC+AGG | 0.665242 | 4_1:-41832910 | Msa0548120:CDS |
| TTATCTAGTAGTATCTACAT+GGG | 0.676689 | 4_1:-41832564 | Msa0548120:three_prime_UTR |
| ATTGTTCTAAAATGGGCAAG+CGG | 0.677673 | 4_1:-41833055 | Msa0548120:CDS |
| TACGATAATACTTATGACAG+CGG | 0.678800 | 4_1:+41832878 | None:intergenic |
| CCATGCGTCAATGAAACAAG+GGG | 0.685581 | 4_1:+41837824 | None:intergenic |
| CAATCAAGAAGACAATACGC+TGG | 0.698783 | 4_1:-41834009 | Msa0548120:CDS |
| ACTTTGGAAGCAGTGCTGTG+GGG | 0.718142 | 4_1:-41837799 | Msa0548120:CDS |
| GGATGATATCAGTGACAACG+AGG | 0.724876 | 4_1:-41832979 | Msa0548120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTAATTTTTTTAATTCA+TGG | - | chr4_1:41832693-41832712 | Msa0548120:three_prime_UTR | 10.0% |
| !!! | ATCATTGAATATTTTTTTTT+GGG | - | chr4_1:41837193-41837212 | Msa0548120:intron | 10.0% |
| !! | AAGTTTGATGAATAATTATT+GGG | + | chr4_1:41832610-41832629 | None:intergenic | 15.0% |
| !! | TAAGTTTGATGAATAATTAT+TGG | + | chr4_1:41832611-41832630 | None:intergenic | 15.0% |
| !! | AATAATTATTCATCAAACTT+AGG | - | chr4_1:41832610-41832629 | Msa0548120:three_prime_UTR | 15.0% |
| !!! | ATTTAACAAGTTTTAGAAAT+TGG | - | chr4_1:41833989-41834008 | Msa0548120:CDS | 15.0% |
| !! | AAAATTATCATCTTTATGTT+TGG | - | chr4_1:41834886-41834905 | Msa0548120:CDS | 15.0% |
| !!! | AAGTTTTAGAATATGAAAAA+TGG | - | chr4_1:41836547-41836566 | Msa0548120:intron | 15.0% |
| !!! | AATCATTTTTTAGTTTTTGT+TGG | - | chr4_1:41836725-41836744 | Msa0548120:intron | 15.0% |
| !! | AAAAAAAAGGTAAATATTGT+TGG | + | chr4_1:41836916-41836935 | None:intergenic | 15.0% |
| !! | AACATTAAATAAAATCACTT+AGG | - | chr4_1:41837095-41837114 | Msa0548120:intron | 15.0% |
| !!! | GATCATTGAATATTTTTTTT+TGG | - | chr4_1:41837192-41837211 | Msa0548120:intron | 15.0% |
| !! | AACATCTAATATAGTTATTT+AGG | + | chr4_1:41838875-41838894 | None:intergenic | 15.0% |
| !! | TGATAAGCTCTTATATTATA+AGG | - | chr4_1:41833325-41833344 | Msa0548120:intron | 20.0% |
| !!! | ATTTAAATGGATTCAAAAGT+GGG | - | chr4_1:41833800-41833819 | Msa0548120:intron | 20.0% |
| !!! | TCAAGTTATTATTAACCTTT+TGG | - | chr4_1:41834696-41834715 | Msa0548120:intron | 20.0% |
| !! | ATAGCAAATATGTTAAATGT+GGG | + | chr4_1:41834813-41834832 | None:intergenic | 20.0% |
| !! | AATAGCAAATATGTTAAATG+TGG | + | chr4_1:41834814-41834833 | None:intergenic | 20.0% |
| !! | ATTAAAAAGTAAGTGTAGTT+AGG | - | chr4_1:41835261-41835280 | Msa0548120:intron | 20.0% |
| !! | TTATTTACATATGACATTTG+TGG | - | chr4_1:41835713-41835732 | Msa0548120:intron | 20.0% |
| !! | ATGTCAATATATATATTCCT+TGG | - | chr4_1:41835790-41835809 | Msa0548120:intron | 20.0% |
| !! | TGTCAATATATATATTCCTT+GGG | - | chr4_1:41835791-41835810 | Msa0548120:intron | 20.0% |
| !!! | TAATTTGAAACAATTGTTAC+CGG | - | chr4_1:41835899-41835918 | Msa0548120:intron | 20.0% |
| !! | GGCATATATCTAATTTATAT+GGG | + | chr4_1:41836074-41836093 | None:intergenic | 20.0% |
| !! | AGGCATATATCTAATTTATA+TGG | + | chr4_1:41836075-41836094 | None:intergenic | 20.0% |
| !!! | TTTAGATTTAGTGTTGAATT+AGG | - | chr4_1:41836136-41836155 | Msa0548120:intron | 20.0% |
| !! | ACTAGAACATAAACAAATAT+GGG | + | chr4_1:41836218-41836237 | None:intergenic | 20.0% |
| !! | AACTAGAACATAAACAAATA+TGG | + | chr4_1:41836219-41836238 | None:intergenic | 20.0% |
| !!! | TTTTCATATTCTAAAACTTC+AGG | + | chr4_1:41836546-41836565 | None:intergenic | 20.0% |
| !! | TCTATTTCAAACTAATCTAT+TGG | - | chr4_1:41836686-41836705 | Msa0548120:intron | 20.0% |
| !!! | ACCTTTGATTTGTTAATTAA+TGG | - | chr4_1:41836976-41836995 | Msa0548120:CDS | 20.0% |
| !! | ACCATTAATTAACAAATCAA+AGG | + | chr4_1:41836980-41836999 | None:intergenic | 20.0% |
| !! | ATATTTACTTGCATATTTCT+TGG | - | chr4_1:41837313-41837332 | Msa0548120:intron | 20.0% |
| !!! | CTATTTTCTTTGTTGTTTTA+GGG | + | chr4_1:41838037-41838056 | None:intergenic | 20.0% |
| !!! | AATGCAATTTTAATTATCCT+AGG | - | chr4_1:41838157-41838176 | Msa0548120:intron | 20.0% |
| !!! | ATGCAATTTTAATTATCCTA+GGG | - | chr4_1:41838158-41838177 | Msa0548120:intron | 20.0% |
| !!! | TTTAAAGAAAGCACAAATTT+TGG | + | chr4_1:41838235-41838254 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCATTTGAATCAT+AGG | - | chr4_1:41838262-41838281 | Msa0548120:intron | 20.0% |
| !! | AAGAAAAAGTTAAAGATAGA+AGG | - | chr4_1:41838302-41838321 | Msa0548120:intron | 20.0% |
| !!! | TCATAAGTATTATCGTATTT+TGG | - | chr4_1:41838585-41838604 | Msa0548120:intron | 20.0% |
| !!! | CATAAGTATTATCGTATTTT+GGG | - | chr4_1:41838586-41838605 | Msa0548120:intron | 20.0% |
| !! | CTACAAATTTATTTCAACTA+GGG | + | chr4_1:41838678-41838697 | None:intergenic | 20.0% |
| !! | TCTACAAATTTATTTCAACT+AGG | + | chr4_1:41838679-41838698 | None:intergenic | 20.0% |
| !!! | AGATAAAATATCTCTAGTTT+TGG | - | chr4_1:41838759-41838778 | Msa0548120:intron | 20.0% |
| ! | TTTAGTTGAAGTTGTTTAGA+CGG | + | chr4_1:41832516-41832535 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTACAATTCACTA+TGG | - | chr4_1:41832719-41832738 | Msa0548120:three_prime_UTR | 25.0% |
| !! | AAAGGATGTTTTGTGTAATT+TGG | - | chr4_1:41833074-41833093 | Msa0548120:CDS | 25.0% |
| !! | AAGGATGTTTTGTGTAATTT+GGG | - | chr4_1:41833075-41833094 | Msa0548120:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr4_1:41833354-41833373 | Msa0548120:intron | 25.0% |
| ! | TTTGAATCCATTTAAATGGT+GGG | + | chr4_1:41833797-41833816 | None:intergenic | 25.0% |
| !! | TTTTGAATCCATTTAAATGG+TGG | + | chr4_1:41833798-41833817 | None:intergenic | 25.0% |
| !! | CACTTTTGAATCCATTTAAA+TGG | + | chr4_1:41833801-41833820 | None:intergenic | 25.0% |
| !! | CATTTAAATGGATTCAAAAG+TGG | - | chr4_1:41833799-41833818 | Msa0548120:intron | 25.0% |
| ! | ATTCAGTTACATAGCAAAAA+TGG | + | chr4_1:41833946-41833965 | None:intergenic | 25.0% |
| ! | TTAACCTTTACAGAAAAAAG+GGG | + | chr4_1:41834275-41834294 | None:intergenic | 25.0% |
| ! | CTTAACCTTTACAGAAAAAA+GGG | + | chr4_1:41834276-41834295 | None:intergenic | 25.0% |
| ! | AGAATTAGTAATATGATCTG+AGG | + | chr4_1:41834503-41834522 | None:intergenic | 25.0% |
| ! | AATACTAGGTATATGATTTG+AGG | - | chr4_1:41834571-41834590 | Msa0548120:intron | 25.0% |
| ! | ATACTAGGTATATGATTTGA+GGG | - | chr4_1:41834572-41834591 | Msa0548120:intron | 25.0% |
| ! | AGCTAACTTTACCAATTAAA+TGG | + | chr4_1:41834750-41834769 | None:intergenic | 25.0% |
| ! | ATTACACTTAAGTTTCTGTT+TGG | - | chr4_1:41834831-41834850 | Msa0548120:intron | 25.0% |
| ! | TTTAGTGATCTTAGAGTTAA+TGG | - | chr4_1:41834863-41834882 | Msa0548120:CDS | 25.0% |
| ! | ACAAAGAAAATTCAGAAACA+GGG | + | chr4_1:41834946-41834965 | None:intergenic | 25.0% |
| ! | TACAAAGAAAATTCAGAAAC+AGG | + | chr4_1:41834947-41834966 | None:intergenic | 25.0% |
| ! | ATTTCTCAAATGTTCTTTCA+TGG | + | chr4_1:41834992-41835011 | None:intergenic | 25.0% |
| ! | ATTCAAGAGAAATAATAGCT+AGG | - | chr4_1:41835082-41835101 | Msa0548120:intron | 25.0% |
| !! | TTAGATTTTGCACAATTTCA+TGG | + | chr4_1:41835394-41835413 | None:intergenic | 25.0% |
| ! | TTAATTGATGTTCGAATTGT+AGG | + | chr4_1:41835581-41835600 | None:intergenic | 25.0% |
| ! | ACTGAAAAAAACATCTATTG+TGG | - | chr4_1:41835681-41835700 | Msa0548120:intron | 25.0% |
| ! | AACACTAAATCTAAATCAAG+AGG | + | chr4_1:41836131-41836150 | None:intergenic | 25.0% |
| ! | TTTGATACCATCTTAGAATT+TGG | + | chr4_1:41836168-41836187 | None:intergenic | 25.0% |
| ! | TGAAAATCACTTTATTCAAG+AGG | + | chr4_1:41836457-41836476 | None:intergenic | 25.0% |
| !! | TATCATGTTATAGCATTTTC+CGG | + | chr4_1:41836656-41836675 | None:intergenic | 25.0% |
| ! | ACAGACGACTAAAAAAAAAA+AGG | + | chr4_1:41836929-41836948 | None:intergenic | 25.0% |
| ! | TATGCTATTGCTATCTAATA+AGG | + | chr4_1:41837296-41837315 | None:intergenic | 25.0% |
| ! | TAAATATTCAGTAGACAGAT+GGG | + | chr4_1:41837699-41837718 | None:intergenic | 25.0% |
| ! | ATTGGTTACTCATTAAACTA+AGG | + | chr4_1:41837755-41837774 | None:intergenic | 25.0% |
| !!! | TTTTAGGGTGAATAAATGAA+GGG | + | chr4_1:41838022-41838041 | None:intergenic | 25.0% |
| !!! | GCTATTTTCTTTGTTGTTTT+AGG | + | chr4_1:41838038-41838057 | None:intergenic | 25.0% |
| ! | AACAAAGAAAATAGCAAAGA+GGG | - | chr4_1:41838043-41838062 | Msa0548120:intron | 25.0% |
| !!! | TGCAATTTTAATTATCCTAG+GGG | - | chr4_1:41838159-41838178 | Msa0548120:intron | 25.0% |
| !!! | TTTAACTTTTTCTTAGTAGC+TGG | + | chr4_1:41838296-41838315 | None:intergenic | 25.0% |
| !!! | ATGTGTGAATTGTTCTAAAA+TGG | - | chr4_1:41838394-41838413 | Msa0548120:intron | 25.0% |
| !!! | TGTGTGAATTGTTCTAAAAT+GGG | - | chr4_1:41838395-41838414 | Msa0548120:intron | 25.0% |
| !! | AATAAAAGGTGTGTGTTTAT+GGG | - | chr4_1:41838800-41838819 | Msa0548120:intron | 25.0% |
| ! | TTATCTAGTAGTATCTACAT+GGG | - | chr4_1:41838893-41838912 | Msa0548120:intron | 25.0% |
| ! | CGAAGAATGAATCATTTTGT+TGG | - | chr4_1:41832485-41832504 | Msa0548120:three_prime_UTR | 30.0% |
| ! | TGAAAAGTTAACCTGATTTG+TGG | + | chr4_1:41832571-41832590 | None:intergenic | 30.0% |
| ! | TTGGAATCTTTGTGATTTGT+CGG | - | chr4_1:41832939-41832958 | Msa0548120:CDS | 30.0% |
| ! | CAGATTTTGTACGCAATTTT+CGG | - | chr4_1:41832985-41833004 | Msa0548120:CDS | 30.0% |
| ! | CAGTTTGAAATCTTGTTTAG+TGG | - | chr4_1:41833025-41833044 | Msa0548120:CDS | 30.0% |
| ! | TGAAATCTTGTTTAGTGGTT+AGG | - | chr4_1:41833030-41833049 | Msa0548120:CDS | 30.0% |
| GTGGAATGTTGTAGTTTAAA+AGG | - | chr4_1:41833056-41833075 | Msa0548120:CDS | 30.0% | |
| ! | AGGATGTTTTGTGTAATTTG+GGG | - | chr4_1:41833076-41833095 | Msa0548120:CDS | 30.0% |
| ! | GCTTATTTGAGTTCACTTAT+TGG | - | chr4_1:41833112-41833131 | Msa0548120:CDS | 30.0% |
| AAGTTCTCAAAGATAGCTTA+TGG | - | chr4_1:41833218-41833237 | Msa0548120:intron | 30.0% | |
| AAAACTATCTATGCCATGTT+TGG | + | chr4_1:41833370-41833389 | None:intergenic | 30.0% | |
| AAAAACGTACAAAAAACAGC+TGG | - | chr4_1:41833569-41833588 | Msa0548120:CDS | 30.0% | |
| GCTATGTAACTGAATTATCT+TGG | - | chr4_1:41833951-41833970 | Msa0548120:CDS | 30.0% | |
| AGATTTATGTTCCCTTTCTA+TGG | - | chr4_1:41834158-41834177 | Msa0548120:intron | 30.0% | |
| CCTTAACCTTTACAGAAAAA+AGG | + | chr4_1:41834277-41834296 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTCTGTAAAGGTTA+AGG | - | chr4_1:41834274-41834293 | Msa0548120:intron | 30.0% |
| TCACGTATATAGCAGAATTT+GGG | + | chr4_1:41834376-41834395 | None:intergenic | 30.0% | |
| TTCACGTATATAGCAGAATT+TGG | + | chr4_1:41834377-41834396 | None:intergenic | 30.0% | |
| GCAATGGAAAGAACTAATAA+TGG | + | chr4_1:41834442-41834461 | None:intergenic | 30.0% | |
| TGCAGGATAATTTGAATACT+AGG | - | chr4_1:41834557-41834576 | Msa0548120:intron | 30.0% | |
| CTACTAATCACATCATAACA+AGG | + | chr4_1:41834616-41834635 | None:intergenic | 30.0% | |
| CAATTAAATGGTCCTCAATT+AGG | + | chr4_1:41834738-41834757 | None:intergenic | 30.0% | |
| CTAATTGAGGACCATTTAAT+TGG | - | chr4_1:41834736-41834755 | Msa0548120:intron | 30.0% | |
| TTATCATCTTTATGTTTGGC+AGG | - | chr4_1:41834890-41834909 | Msa0548120:CDS | 30.0% | |
| ACAGGGATAATTAGAAACAT+AGG | + | chr4_1:41834929-41834948 | None:intergenic | 30.0% | |
| TTAACTCTCAAGTATATAGC+TGG | + | chr4_1:41835142-41835161 | None:intergenic | 30.0% | |
| GTCTGAACTATGACAAAATT+TGG | - | chr4_1:41835175-41835194 | Msa0548120:intron | 30.0% | |
| AGACTTCTCTATTACAACAT+TGG | - | chr4_1:41835284-41835303 | Msa0548120:intron | 30.0% | |
| TAAACTGATCATTATCAGAG+CGG | + | chr4_1:41835320-41835339 | None:intergenic | 30.0% | |
| ! | ATTTTGCACAATTTCATGGA+TGG | + | chr4_1:41835390-41835409 | None:intergenic | 30.0% |
| TGTAACCAGAATTTCGAAAA+TGG | + | chr4_1:41835642-41835661 | None:intergenic | 30.0% | |
| ! | ATTTGTGGTCTGTTCTTTTT+GGG | - | chr4_1:41835728-41835747 | Msa0548120:intron | 30.0% |
| ! | TCAACATTCTACAGTACTTT+TGG | + | chr4_1:41835944-41835963 | None:intergenic | 30.0% |
| !! | AGTTTTGTAAAGACTATCTC+AGG | + | chr4_1:41836095-41836114 | None:intergenic | 30.0% |
| GAGATAGTCTTTACAAAACT+TGG | - | chr4_1:41836095-41836114 | Msa0548120:intron | 30.0% | |
| TAAATCTAAATCAAGAGGTG+AGG | + | chr4_1:41836126-41836145 | None:intergenic | 30.0% | |
| GCTATATTACTAGTTGAAGT+CGG | + | chr4_1:41836331-41836350 | None:intergenic | 30.0% | |
| TATAGCTAAAGCTGTCTATA+AGG | - | chr4_1:41836345-41836364 | Msa0548120:intron | 30.0% | |
| TAAAGCTGTCTATAAGGATT+GGG | - | chr4_1:41836351-41836370 | Msa0548120:intron | 30.0% | |
| AAGTTCTTTGAATTTGTGCT+AGG | + | chr4_1:41836417-41836436 | None:intergenic | 30.0% | |
| !!! | TGTGCATAATTTTGCTATTC+CGG | - | chr4_1:41836634-41836653 | Msa0548120:intron | 30.0% |
| CTAAAGTGAATTACTCACTT+TGG | - | chr4_1:41837021-41837040 | Msa0548120:CDS | 30.0% | |
| ACATATTCAATTGTGAGATC+CGG | + | chr4_1:41837052-41837071 | None:intergenic | 30.0% | |
| AAATATTCAGTAGACAGATG+GGG | + | chr4_1:41837698-41837717 | None:intergenic | 30.0% | |
| GTAAATATTCAGTAGACAGA+TGG | + | chr4_1:41837700-41837719 | None:intergenic | 30.0% | |
| AAACCCTCAAATTACAGTAT+TGG | - | chr4_1:41837832-41837851 | Msa0548120:CDS | 30.0% | |
| !!! | GTTTTAGGGTGAATAAATGA+AGG | + | chr4_1:41838023-41838042 | None:intergenic | 30.0% |
| CAACAAAGAAAATAGCAAAG+AGG | - | chr4_1:41838042-41838061 | Msa0548120:intron | 30.0% | |
| TCTCAGTCAATAAAAAAACG+AGG | - | chr4_1:41838073-41838092 | Msa0548120:intron | 30.0% | |
| CTCAGTCAATAAAAAAACGA+GGG | - | chr4_1:41838074-41838093 | Msa0548120:intron | 30.0% | |
| TACGATAATACTTATGACAG+CGG | + | chr4_1:41838582-41838601 | None:intergenic | 30.0% | |
| ACTAGGGAAGTAAACTAATT+TGG | + | chr4_1:41838662-41838681 | None:intergenic | 30.0% | |
| AGGATTTGTCTTTGTGAATT+AGG | - | chr4_1:41838712-41838731 | Msa0548120:intron | 30.0% | |
| ATTTGTCTTTGTGAATTAGG+AGG | - | chr4_1:41838715-41838734 | Msa0548120:intron | 30.0% | |
| ! | CAATAAAAGGTGTGTGTTTA+TGG | - | chr4_1:41838799-41838818 | Msa0548120:intron | 30.0% |
| GTTATCTAGTAGTATCTACA+TGG | - | chr4_1:41838892-41838911 | Msa0548120:intron | 30.0% | |
| TTCATCTTTCTCCACAAATC+AGG | - | chr4_1:41832557-41832576 | Msa0548120:three_prime_UTR | 35.0% | |
| CAACGTATCAGTATCATATC+TGG | + | chr4_1:41832831-41832850 | None:intergenic | 35.0% | |
| TTGATATGATACGTCGAAAG+CGG | - | chr4_1:41832848-41832867 | Msa0548120:CDS | 35.0% | |
| ATTCCAAAAGCCTTGACATT+GGG | + | chr4_1:41832926-41832945 | None:intergenic | 35.0% | |
| ! | TGGAATCTTTGTGATTTGTC+GGG | - | chr4_1:41832940-41832959 | Msa0548120:CDS | 35.0% |
| ATTTGTCGGGATTACATTTG+CGG | - | chr4_1:41832953-41832972 | Msa0548120:CDS | 35.0% | |
| TTGTTTAGTGGTTAGGATAG+TGG | - | chr4_1:41833037-41833056 | Msa0548120:CDS | 35.0% | |
| ACTTATTGGCATAAGCACTT+AGG | - | chr4_1:41833126-41833145 | Msa0548120:CDS | 35.0% | |
| CTTATTGGCATAAGCACTTA+GGG | - | chr4_1:41833127-41833146 | Msa0548120:CDS | 35.0% | |
| TTATTGGCATAAGCACTTAG+GGG | - | chr4_1:41833128-41833147 | Msa0548120:CDS | 35.0% | |
| !! | GGTCTGGTTGTTTTCTTATT+TGG | - | chr4_1:41833149-41833168 | Msa0548120:CDS | 35.0% |
| TGAATTGCCTTCGGTTTATA+TGG | - | chr4_1:41833476-41833495 | Msa0548120:CDS | 35.0% | |
| GAATTGCCTTCGGTTTATAT+GGG | - | chr4_1:41833477-41833496 | Msa0548120:CDS | 35.0% | |
| AAACAAAACAGTGCTATCAC+TGG | - | chr4_1:41833543-41833562 | Msa0548120:CDS | 35.0% | |
| AACAAAACAGTGCTATCACT+GGG | - | chr4_1:41833544-41833563 | Msa0548120:CDS | 35.0% | |
| TATCTTTGTGCAAAGCCTTT+GGG | + | chr4_1:41833606-41833625 | None:intergenic | 35.0% | |
| ATATCTTTGTGCAAAGCCTT+TGG | + | chr4_1:41833607-41833626 | None:intergenic | 35.0% | |
| !! | AATCCATTTAAATGGTGGGT+AGG | + | chr4_1:41833793-41833812 | None:intergenic | 35.0% |
| ATCTACCAAGTCCATAGAAA+GGG | + | chr4_1:41834172-41834191 | None:intergenic | 35.0% | |
| AATCTACCAAGTCCATAGAA+AGG | + | chr4_1:41834173-41834192 | None:intergenic | 35.0% | |
| TTTCTGTAAAGGTTAAGGAG+CGG | - | chr4_1:41834279-41834298 | Msa0548120:intron | 35.0% | |
| TGCTATATACGTGAAGCATA+TGG | - | chr4_1:41834382-41834401 | Msa0548120:intron | 35.0% | |
| TTAATACTCTCTCTTCTACC+AGG | - | chr4_1:41834405-41834424 | Msa0548120:intron | 35.0% | |
| ! | ATAATGGTCTTGATAGTACC+TGG | + | chr4_1:41834426-41834445 | None:intergenic | 35.0% |
| TTCAGAAATATCTGCTGAAC+CGG | - | chr4_1:41834528-41834547 | Msa0548120:intron | 35.0% | |
| GTATTCAAATTATCCTGCAC+AGG | + | chr4_1:41834556-41834575 | None:intergenic | 35.0% | |
| !!! | TTATTAACCTTTTGGCTCAG+AGG | - | chr4_1:41834704-41834723 | Msa0548120:intron | 35.0% |
| !!! | TATTAACCTTTTGGCTCAGA+GGG | - | chr4_1:41834705-41834724 | Msa0548120:intron | 35.0% |
| CATAGTTCAGACTTCAGTTT+AGG | + | chr4_1:41835167-41835186 | None:intergenic | 35.0% | |
| !! | TTAGTGCCTTATTTCCAACT+TGG | - | chr4_1:41835474-41835493 | Msa0548120:intron | 35.0% |
| TTGATGTTCGAATTGTAGGT+AGG | + | chr4_1:41835577-41835596 | None:intergenic | 35.0% | |
| AATGAAAAGACTGTGTAGTC+TGG | - | chr4_1:41835602-41835621 | Msa0548120:intron | 35.0% | |
| ! | TGTGTAGTCTGGTTTATTCA+TGG | - | chr4_1:41835613-41835632 | Msa0548120:intron | 35.0% |
| ! | CATTTGTGGTCTGTTCTTTT+TGG | - | chr4_1:41835727-41835746 | Msa0548120:intron | 35.0% |
| ATCATTCATGTTGAAACCCA+AGG | + | chr4_1:41835810-41835829 | None:intergenic | 35.0% | |
| ! | TTTGAAACAATTGTTACCGG+AGG | - | chr4_1:41835902-41835921 | Msa0548120:intron | 35.0% |
| TTGAAACAATTGTTACCGGA+GGG | - | chr4_1:41835903-41835922 | Msa0548120:intron | 35.0% | |
| TTATTGAGCCGATAATGTAC+AGG | - | chr4_1:41835967-41835986 | Msa0548120:intron | 35.0% | |
| TATTGAGCCGATAATGTACA+GGG | - | chr4_1:41835968-41835987 | Msa0548120:intron | 35.0% | |
| ! | GTTGAGTCCAAATTCTAAGA+TGG | - | chr4_1:41836158-41836177 | Msa0548120:intron | 35.0% |
| TCTATCCAAGACCTGTTATT+GGG | - | chr4_1:41836189-41836208 | Msa0548120:intron | 35.0% | |
| CTAAAGCTGTCTATAAGGAT+TGG | - | chr4_1:41836350-41836369 | Msa0548120:intron | 35.0% | |
| AAACCCAAAAACCAGATCAA+GGG | + | chr4_1:41836386-41836405 | None:intergenic | 35.0% | |
| !! | TAGTTTGCCAGAAAGGTATT+TGG | - | chr4_1:41836608-41836627 | Msa0548120:intron | 35.0% |
| CACAAAACCAAATACCTTTC+TGG | + | chr4_1:41836618-41836637 | None:intergenic | 35.0% | |
| TTGTTTCCAAACAATGAGAC+AGG | + | chr4_1:41836766-41836785 | None:intergenic | 35.0% | |
| !!! | AGTTGCTTTTCACAATTGAG+CGG | - | chr4_1:41836825-41836844 | Msa0548120:intron | 35.0% |
| AAGTGAATTACTCACTTTGG+AGG | - | chr4_1:41837024-41837043 | Msa0548120:CDS | 35.0% | |
| TTGAGCGAGTTTCAAAATCT+TGG | - | chr4_1:41837261-41837280 | Msa0548120:intron | 35.0% | |
| AGTTTCAAAATCTTGGTCAG+AGG | - | chr4_1:41837268-41837287 | Msa0548120:intron | 35.0% | |
| TAGAAGCTGTGTAAAATCTG+TGG | + | chr4_1:41837401-41837420 | None:intergenic | 35.0% | |
| TTGTCTTCTTGATTGAGGTA+AGG | + | chr4_1:41837443-41837462 | None:intergenic | 35.0% | |
| AATTCTTACAGTAGAAGAGC+TGG | - | chr4_1:41837485-41837504 | Msa0548120:intron | 35.0% | |
| AGCAAATCGAGGTTTATCTT+GGG | + | chr4_1:41837607-41837626 | None:intergenic | 35.0% | |
| AAAGCAAACATGAGAACTAG+TGG | + | chr4_1:41837660-41837679 | None:intergenic | 35.0% | |
| GATACTGAAGCAAAGATCAT+TGG | + | chr4_1:41837773-41837792 | None:intergenic | 35.0% | |
| TCAGTATCACAGGTAGAATA+TGG | - | chr4_1:41837785-41837804 | Msa0548120:CDS | 35.0% | |
| CAGTATCACAGGTAGAATAT+GGG | - | chr4_1:41837786-41837805 | Msa0548120:CDS | 35.0% | |
| AGTATCACAGGTAGAATATG+GGG | - | chr4_1:41837787-41837806 | Msa0548120:CDS | 35.0% | |
| CCACCAATACTGTAATTTGA+GGG | + | chr4_1:41837838-41837857 | None:intergenic | 35.0% | |
| TCCACCAATACTGTAATTTG+AGG | + | chr4_1:41837839-41837858 | None:intergenic | 35.0% | |
| ATTTGCATGGGAATTCTCAA+TGG | + | chr4_1:41837878-41837897 | None:intergenic | 35.0% | |
| AACAAACAACCAAGACGATT+AGG | + | chr4_1:41837938-41837957 | None:intergenic | 35.0% | |
| GATTACCTGAAGAAAAGTCT+GGG | + | chr4_1:41837996-41838015 | None:intergenic | 35.0% | |
| AGATTACCTGAAGAAAAGTC+TGG | + | chr4_1:41837997-41838016 | None:intergenic | 35.0% | |
| GTTGTTGATCATGAAGTACA+CGG | - | chr4_1:41838111-41838130 | Msa0548120:intron | 35.0% | |
| !! | ATTGTTCTAAAATGGGCAAG+CGG | - | chr4_1:41838402-41838421 | Msa0548120:intron | 35.0% |
| ACAAAGACAAATCCTACTAG+AGG | + | chr4_1:41838707-41838726 | None:intergenic | 35.0% | |
| GAACATGCGTCAATTATAGA+TGG | + | chr4_1:41839000-41839019 | None:intergenic | 35.0% | |
| GATTCCAAAAGCCTTGACAT+TGG | + | chr4_1:41832927-41832946 | None:intergenic | 40.0% | |
| CAGAGAAACTGAATTGCCTT+CGG | - | chr4_1:41833467-41833486 | Msa0548120:intron | 40.0% | |
| TTCGGTTTATATGGGAGAGA+GGG | - | chr4_1:41833485-41833504 | Msa0548120:CDS | 40.0% | |
| ACCATGCGTCAATGAAACAA+GGG | + | chr4_1:41833637-41833656 | None:intergenic | 40.0% | |
| !! | TTGCTGCTTTAGAAGCTGTA+AGG | - | chr4_1:41833706-41833725 | Msa0548120:intron | 40.0% |
| !! | ATTTAAATGGTGGGTAGGCA+AGG | + | chr4_1:41833788-41833807 | None:intergenic | 40.0% |
| TTGCCTACCCACCATTTAAA+TGG | - | chr4_1:41833787-41833806 | Msa0548120:intron | 40.0% | |
| CATCGATGTTTGTGTACTTC+TGG | - | chr4_1:41834019-41834038 | Msa0548120:CDS | 40.0% | |
| ! | TTGTTCCACGACGTTTTATG+TGG | - | chr4_1:41834049-41834068 | Msa0548120:CDS | 40.0% |
| ! | TGTTCCACGACGTTTTATGT+GGG | - | chr4_1:41834050-41834069 | Msa0548120:CDS | 40.0% |
| ATGTTCCCTTTCTATGGACT+TGG | - | chr4_1:41834164-41834183 | Msa0548120:intron | 40.0% | |
| !!! | GTAGCCCCTTTTTTCTGTAA+AGG | - | chr4_1:41834268-41834287 | Msa0548120:intron | 40.0% |
| ATCAGTAAAGGCTGTTGCAA+TGG | + | chr4_1:41834458-41834477 | None:intergenic | 40.0% | |
| ACATTCCAGTGCATCAGTAA+AGG | + | chr4_1:41834470-41834489 | None:intergenic | 40.0% | |
| AAATAACCCTCTGAGCCAAA+AGG | + | chr4_1:41834714-41834733 | None:intergenic | 40.0% | |
| GAGGGTTATTTGCCTAATTG+AGG | - | chr4_1:41834723-41834742 | Msa0548120:intron | 40.0% | |
| GTTAAATGTGGGATCATCCA+GGG | + | chr4_1:41834802-41834821 | None:intergenic | 40.0% | |
| TGTTAAATGTGGGATCATCC+AGG | + | chr4_1:41834803-41834822 | None:intergenic | 40.0% | |
| ATGTTTGGCAGGTTTCTTTC+TGG | - | chr4_1:41834901-41834920 | Msa0548120:CDS | 40.0% | |
| GTTAGTAGTCGTTAGTAGTC+TGG | - | chr4_1:41835344-41835363 | Msa0548120:intron | 40.0% | |
| ! | TTGTAGAAACTGGTTCAGTG+TGG | + | chr4_1:41835434-41835453 | None:intergenic | 40.0% |
| CAAGAAGACGTTGTAGAAAC+TGG | + | chr4_1:41835444-41835463 | None:intergenic | 40.0% | |
| ! | AGTGCACCAAGTTGGAAATA+AGG | + | chr4_1:41835483-41835502 | None:intergenic | 40.0% |
| ! | GGCTTCCATTTTCGAAATTC+TGG | - | chr4_1:41835634-41835653 | Msa0548120:intron | 40.0% |
| CAACCAACATGCTCAGAAAA+CGG | + | chr4_1:41835754-41835773 | None:intergenic | 40.0% | |
| TAACAAGCACCAACATCGAA+AGG | + | chr4_1:41836015-41836034 | None:intergenic | 40.0% | |
| GTCTATCCAAGACCTGTTAT+TGG | - | chr4_1:41836188-41836207 | Msa0548120:intron | 40.0% | |
| AATATGGGTGACCCAATAAC+AGG | + | chr4_1:41836203-41836222 | None:intergenic | 40.0% | |
| ! | GTTCTAGTTGACTTAGTCCT+AGG | - | chr4_1:41836230-41836249 | Msa0548120:intron | 40.0% |
| AAAACCAGATCAAGGGATGA+GGG | + | chr4_1:41836379-41836398 | None:intergenic | 40.0% | |
| AAAAACCAGATCAAGGGATG+AGG | + | chr4_1:41836380-41836399 | None:intergenic | 40.0% | |
| !!! | TCATCCCTTGATCTGGTTTT+TGG | - | chr4_1:41836379-41836398 | Msa0548120:intron | 40.0% |
| !!! | CATCCCTTGATCTGGTTTTT+GGG | - | chr4_1:41836380-41836399 | Msa0548120:intron | 40.0% |
| CAAACCCAAAAACCAGATCA+AGG | + | chr4_1:41836387-41836406 | None:intergenic | 40.0% | |
| !!! | CTGGTTTTTGGGTTTGAGTT+AGG | - | chr4_1:41836391-41836410 | Msa0548120:intron | 40.0% |
| TAAAACTTCAGGAGCTCTCT+CGG | + | chr4_1:41836535-41836554 | None:intergenic | 40.0% | |
| AACGAAGAGCTGGAAAATCA+AGG | - | chr4_1:41836582-41836601 | Msa0548120:intron | 40.0% | |
| ACGAAGAGCTGGAAAATCAA+GGG | - | chr4_1:41836583-41836602 | Msa0548120:intron | 40.0% | |
| !! | AAGGGATTAGTTTGCCAGAA+AGG | - | chr4_1:41836601-41836620 | Msa0548120:intron | 40.0% |
| TCTACTCCTGTCTCATTGTT+TGG | - | chr4_1:41836757-41836776 | Msa0548120:intron | 40.0% | |
| TTAGAGAGTAAAGCGAGCAA+AGG | + | chr4_1:41837005-41837024 | None:intergenic | 40.0% | |
| CACTTTATTCATCCCCAACT+CGG | - | chr4_1:41837141-41837160 | Msa0548120:intron | 40.0% | |
| ACTTTATTCATCCCCAACTC+GGG | - | chr4_1:41837142-41837161 | Msa0548120:intron | 40.0% | |
| AAGTACTTAATCCCCGAGTT+GGG | + | chr4_1:41837157-41837176 | None:intergenic | 40.0% | |
| TAAGTACTTAATCCCCGAGT+TGG | + | chr4_1:41837158-41837177 | None:intergenic | 40.0% | |
| GCACAAACACCACTAAATCA+TGG | + | chr4_1:41837358-41837377 | None:intergenic | 40.0% | |
| GCGTATTGTCTTCTTGATTG+AGG | + | chr4_1:41837448-41837467 | None:intergenic | 40.0% | |
| CAATCAAGAAGACAATACGC+TGG | - | chr4_1:41837448-41837467 | Msa0548120:intron | 40.0% | |
| GCTGGAAATGTGGTCAAATA+TGG | - | chr4_1:41837503-41837522 | Msa0548120:intron | 40.0% | |
| TGTGGTCAAATATGGTGTTC+TGG | - | chr4_1:41837511-41837530 | Msa0548120:intron | 40.0% | |
| TCAAATATGGTGTTCTGGCA+TGG | - | chr4_1:41837516-41837535 | Msa0548120:intron | 40.0% | |
| GAGCAAATCGAGGTTTATCT+TGG | + | chr4_1:41837608-41837627 | None:intergenic | 40.0% | |
| ! | AGATAAACCTCGATTTGCTC+AGG | - | chr4_1:41837608-41837627 | Msa0548120:intron | 40.0% |
| GATCTTTGCTTCAGTATCAC+AGG | - | chr4_1:41837775-41837794 | Msa0548120:CDS | 40.0% | |
| ! | CCCTCAAATTACAGTATTGG+TGG | - | chr4_1:41837835-41837854 | Msa0548120:CDS | 40.0% |
| CAGGATCTCAGTATTTGCAT+GGG | + | chr4_1:41837890-41837909 | None:intergenic | 40.0% | |
| ACAGGATCTCAGTATTTGCA+TGG | + | chr4_1:41837891-41837910 | None:intergenic | 40.0% | |
| ATCTTGCAGAATGGAAGAAC+AGG | + | chr4_1:41837909-41837928 | None:intergenic | 40.0% | |
| AGGAAAGTGATCTTGCAGAA+TGG | + | chr4_1:41837918-41837937 | None:intergenic | 40.0% | |
| GATCACTTTCCTAATCGTCT+TGG | - | chr4_1:41837926-41837945 | Msa0548120:CDS | 40.0% | |
| ! | TATTGCCCAGACTTTTCTTC+AGG | - | chr4_1:41837988-41838007 | Msa0548120:five_prime_UTR | 40.0% |
| ATAAACGTGTTGCACAGACA+AGG | + | chr4_1:41838208-41838227 | None:intergenic | 40.0% | |
| TCAACACTGCCATCATATCT+TGG | - | chr4_1:41838359-41838378 | Msa0548120:intron | 40.0% | |
| ACTACGTCTACATCCAACTA+TGG | - | chr4_1:41838511-41838530 | Msa0548120:intron | 40.0% | |
| CGGTCATCTAATACCATAGT+TGG | + | chr4_1:41838527-41838546 | None:intergenic | 40.0% | |
| !! | GGTCATAGTTGTTGCTTTGA+CGG | + | chr4_1:41838547-41838566 | None:intergenic | 40.0% |
| TCAAAGCAACAACTATGACC+AGG | - | chr4_1:41838547-41838566 | Msa0548120:intron | 40.0% | |
| !!! | TTTTGGGTTGTCATAGCTCT+TGG | - | chr4_1:41838602-41838621 | Msa0548120:intron | 40.0% |
| TTGTAGAGAACACCTCTAGT+AGG | - | chr4_1:41838692-41838711 | Msa0548120:intron | 40.0% | |
| TGTCTTTGTGAATTAGGAGG+TGG | - | chr4_1:41838718-41838737 | Msa0548120:intron | 40.0% | |
| ! | CATGATTCTGTAAAGAGCAC+AGG | + | chr4_1:41838922-41838941 | None:intergenic | 40.0% |
| CTGTGCTCTTTACAGAATCA+TGG | - | chr4_1:41838920-41838939 | Msa0548120:five_prime_UTR | 40.0% | |
| ATGCGTCAATTATAGATGGC+TGG | + | chr4_1:41838996-41839015 | None:intergenic | 40.0% | |
| CGATTTGTGTCCCAATGTCA+AGG | - | chr4_1:41832913-41832932 | Msa0548120:CDS | 45.0% | |
| ! | TGTCCCAATGTCAAGGCTTT+TGG | - | chr4_1:41832920-41832939 | Msa0548120:CDS | 45.0% |
| ! | TGTGTAATTTGGGGTCTGCT+TGG | - | chr4_1:41833085-41833104 | Msa0548120:CDS | 45.0% |
| ! | AATTTGGGGTCTGCTTGGAT+TGG | - | chr4_1:41833090-41833109 | Msa0548120:CDS | 45.0% |
| CTCTCTCCCATATAAACCGA+AGG | + | chr4_1:41833486-41833505 | None:intergenic | 45.0% | |
| CTTCGGTTTATATGGGAGAG+AGG | - | chr4_1:41833484-41833503 | Msa0548120:CDS | 45.0% | |
| CCATGCGTCAATGAAACAAG+GGG | + | chr4_1:41833636-41833655 | None:intergenic | 45.0% | |
| CACCATGCGTCAATGAAACA+AGG | + | chr4_1:41833638-41833657 | None:intergenic | 45.0% | |
| TCATTGACGCATGGTGACTT+TGG | - | chr4_1:41833642-41833661 | Msa0548120:CDS | 45.0% | |
| !! | TTCAAAAGTGGGCTGTGTTC+AGG | - | chr4_1:41833811-41833830 | Msa0548120:intron | 45.0% |
| !! | TCAAAAGTGGGCTGTGTTCA+GGG | - | chr4_1:41833812-41833831 | Msa0548120:intron | 45.0% |
| ! | GGGTTTGGTTAAAAGCATGC+AGG | - | chr4_1:41833833-41833852 | Msa0548120:intron | 45.0% |
| GTAACCCACATAAAACGTCG+TGG | + | chr4_1:41834057-41834076 | None:intergenic | 45.0% | |
| AAAGGTTAAGGAGCGGAGAA+CGG | - | chr4_1:41834286-41834305 | Msa0548120:intron | 45.0% | |
| AACAGCCTTTACTGATGCAC+TGG | - | chr4_1:41834462-41834481 | Msa0548120:intron | 45.0% | |
| GATGCACTGGAATGTAGTGA+TGG | - | chr4_1:41834475-41834494 | Msa0548120:intron | 45.0% | |
| AAATTATCCTGCACAGGAGC+CGG | + | chr4_1:41834550-41834569 | None:intergenic | 45.0% | |
| GATATGCAACAACCAAACCC+TGG | - | chr4_1:41834782-41834801 | Msa0548120:intron | 45.0% | |
| AGTAGTCGTTAGTAGTCTGG+TGG | - | chr4_1:41835347-41835366 | Msa0548120:intron | 45.0% | |
| CTGGTTCAGTGTGGTACAAT+CGG | + | chr4_1:41835425-41835444 | None:intergenic | 45.0% | |
| ! | TCTAGCAGTCAGAGTCTTGT+TGG | - | chr4_1:41835518-41835537 | Msa0548120:intron | 45.0% |
| ACAAATGCATAAGAGCCCTC+CGG | + | chr4_1:41835921-41835940 | None:intergenic | 45.0% | |
| !! | GAAAGGCTACGGTTGATTTG+GGG | + | chr4_1:41835998-41836017 | None:intergenic | 45.0% |
| ! | CGAAAGGCTACGGTTGATTT+GGG | + | chr4_1:41835999-41836018 | None:intergenic | 45.0% |
| TCGAAAGGCTACGGTTGATT+TGG | + | chr4_1:41836000-41836019 | None:intergenic | 45.0% | |
| TTGACTTAGTCCTAGGCATG+AGG | - | chr4_1:41836237-41836256 | Msa0548120:intron | 45.0% | |
| TGACTTAGTCCTAGGCATGA+GGG | - | chr4_1:41836238-41836257 | Msa0548120:intron | 45.0% | |
| TCTCAAAACACACACAGGAC+TGG | + | chr4_1:41836307-41836326 | None:intergenic | 45.0% | |
| TCGGATCTCAAAACACACAC+AGG | + | chr4_1:41836312-41836331 | None:intergenic | 45.0% | |
| AAAACTTCAGGAGCTCTCTC+GGG | + | chr4_1:41836534-41836553 | None:intergenic | 45.0% | |
| ! | AGTCGTCTGTACGCTCTTTT+TGG | - | chr4_1:41836939-41836958 | Msa0548120:CDS | 45.0% |
| ! | ATTACTCACTTTGGAGGAGC+CGG | - | chr4_1:41837030-41837049 | Msa0548120:CDS | 45.0% |
| CTTTATTCATCCCCAACTCG+GGG | - | chr4_1:41837143-41837162 | Msa0548120:intron | 45.0% | |
| AGTACTTAATCCCCGAGTTG+GGG | + | chr4_1:41837156-41837175 | None:intergenic | 45.0% | |
| CTTGGTTTCTTCTGTTGCAG+TGG | - | chr4_1:41837331-41837350 | Msa0548120:intron | 45.0% | |
| TGCAGTGGACCATGATTTAG+TGG | - | chr4_1:41837346-41837365 | Msa0548120:intron | 45.0% | |
| TCAAGAAGACAATACGCTGG+CGG | - | chr4_1:41837451-41837470 | Msa0548120:intron | 45.0% | |
| CAGTAGAAGAGCTGGAAATG+TGG | - | chr4_1:41837493-41837512 | Msa0548120:intron | 45.0% | |
| ACAGACCCTGTCTCATTGTA+AGG | - | chr4_1:41837553-41837572 | Msa0548120:intron | 45.0% | |
| CCAAGCCTTACAATGAGACA+GGG | + | chr4_1:41837561-41837580 | None:intergenic | 45.0% | |
| CCTGTCTCATTGTAAGGCTT+GGG | - | chr4_1:41837559-41837578 | Msa0548120:intron | 45.0% | |
| CTAATTGCCTGAGCAAATCG+AGG | + | chr4_1:41837618-41837637 | None:intergenic | 45.0% | |
| !! | ACAGTATTGGTGGACTGTGA+AGG | - | chr4_1:41837845-41837864 | Msa0548120:CDS | 45.0% |
| GCAATAACACGAGCAATTGC+TGG | + | chr4_1:41837974-41837993 | None:intergenic | 45.0% | |
| TCAATATTTGATGCGCCCCT+AGG | + | chr4_1:41838177-41838196 | None:intergenic | 45.0% | |
| GGGCGCATCAAATATTGAAG+AGG | - | chr4_1:41838179-41838198 | Msa0548120:intron | 45.0% | |
| ACACTGCCATCATATCTTGG+AGG | - | chr4_1:41838362-41838381 | Msa0548120:intron | 45.0% | |
| AGAGTGCAACCTCATGAAAC+TGG | - | chr4_1:41838428-41838447 | Msa0548120:intron | 45.0% | |
| GAGTGCAACCTCATGAAACT+GGG | - | chr4_1:41838429-41838448 | Msa0548120:intron | 45.0% | |
| CAGCAGCAGCAGAATTGTTA+GGG | - | chr4_1:41838454-41838473 | Msa0548120:intron | 45.0% | |
| GGATGATATCAGTGACAACG+AGG | - | chr4_1:41838478-41838497 | Msa0548120:intron | 45.0% | |
| GTTGGATGTAGACGTAGTGA+TGG | + | chr4_1:41838509-41838528 | None:intergenic | 45.0% | |
| ACGAACCTGGTGTGTAAGAT+AGG | - | chr4_1:41838636-41838655 | Msa0548120:intron | 45.0% | |
| TTTGGCCTATCTTACACACC+AGG | + | chr4_1:41838644-41838663 | None:intergenic | 45.0% | |
| TGTGAATTAGGAGGTGGCAA+TGG | - | chr4_1:41838724-41838743 | Msa0548120:intron | 45.0% | |
| CACAGCTCAGCTGCAATAAA+AGG | - | chr4_1:41838786-41838805 | Msa0548120:intron | 45.0% | |
| !!! | ATTTTTTTTTTTTATAAGAT+TGG | + | chr4_1:41835867-41835886 | None:intergenic | 5.0% |
| GGTTTATATGGGAGAGAGGG+TGG | - | chr4_1:41833488-41833507 | Msa0548120:CDS | 50.0% | |
| ! | CCCCTTGTTTCATTGACGCA+TGG | - | chr4_1:41833633-41833652 | Msa0548120:CDS | 50.0% |
| ! | TGACTTTGGAAGCAGTGCTG+TGG | - | chr4_1:41833656-41833675 | Msa0548120:CDS | 50.0% |
| ! | GACTTTGGAAGCAGTGCTGT+GGG | - | chr4_1:41833657-41833676 | Msa0548120:CDS | 50.0% |
| ! | ACTTTGGAAGCAGTGCTGTG+GGG | - | chr4_1:41833658-41833677 | Msa0548120:CDS | 50.0% |
| AGAGTAGATGCCCTTGTGTC+TGG | - | chr4_1:41833739-41833758 | Msa0548120:intron | 50.0% | |
| !! | CAAAAGTGGGCTGTGTTCAG+GGG | - | chr4_1:41833813-41833832 | Msa0548120:intron | 50.0% |
| ATGTGGGATCATCCAGGGTT+TGG | + | chr4_1:41834797-41834816 | None:intergenic | 50.0% | |
| GAGTCAGCACTTGCATCAGT+TGG | + | chr4_1:41835220-41835239 | None:intergenic | 50.0% | |
| !! | TCCAACTTGGTGCACTTTGC+AGG | - | chr4_1:41835487-41835506 | Msa0548120:intron | 50.0% |
| TCCTGCAAAGTGCACCAAGT+TGG | + | chr4_1:41835491-41835510 | None:intergenic | 50.0% | |
| GGGTCAGCCCTGTACATTAT+CGG | + | chr4_1:41835978-41835997 | None:intergenic | 50.0% | |
| CAACCGTAGCCTTTCGATGT+TGG | - | chr4_1:41836003-41836022 | Msa0548120:intron | 50.0% | |
| GCACCAACATCGAAAGGCTA+CGG | + | chr4_1:41836009-41836028 | None:intergenic | 50.0% | |
| GGTGACCCAATAACAGGTCT+TGG | + | chr4_1:41836197-41836216 | None:intergenic | 50.0% | |
| GACTTAGTCCTAGGCATGAG+GGG | - | chr4_1:41836239-41836258 | Msa0548120:intron | 50.0% | |
| AGAGCGTGGAAAATAGCAGG+TGG | + | chr4_1:41836278-41836297 | None:intergenic | 50.0% | |
| CGTAGAGCGTGGAAAATAGC+AGG | + | chr4_1:41836281-41836300 | None:intergenic | 50.0% | |
| !! | TCTCGGGTTGACTGCGAAAA+AGG | + | chr4_1:41836518-41836537 | None:intergenic | 50.0% |
| GACTCAACTCAACGAAGAGC+TGG | - | chr4_1:41836572-41836591 | Msa0548120:intron | 50.0% | |
| CAAGAAGACAATACGCTGGC+GGG | - | chr4_1:41837452-41837471 | Msa0548120:intron | 50.0% | |
| CCCTGTCTCATTGTAAGGCT+TGG | - | chr4_1:41837558-41837577 | Msa0548120:intron | 50.0% | |
| CCCAAGCCTTACAATGAGAC+AGG | + | chr4_1:41837562-41837581 | None:intergenic | 50.0% | |
| ! | TGGGATAGCTTGCAGCACAT+TGG | - | chr4_1:41837578-41837597 | Msa0548120:intron | 50.0% |
| CAGCTGCCTCCAAGATATGA+TGG | + | chr4_1:41838371-41838390 | None:intergenic | 50.0% | |
| CCTAACAATTCTGCTGCTGC+TGG | + | chr4_1:41838456-41838475 | None:intergenic | 50.0% | |
| CCAGCAGCAGCAGAATTGTT+AGG | - | chr4_1:41838453-41838472 | Msa0548120:intron | 50.0% | |
| CAGCAGCAGAATTGTTAGGG+AGG | - | chr4_1:41838457-41838476 | Msa0548120:intron | 50.0% | |
| ! | GTTGTCATAGCTCTTGGTGC+TGG | - | chr4_1:41838608-41838627 | Msa0548120:intron | 50.0% |
| GGCATAAGCACTTAGGGGTC+TGG | - | chr4_1:41833133-41833152 | Msa0548120:CDS | 55.0% | |
| AGATGCCCTTGTGTCTGGCA+AGG | - | chr4_1:41833744-41833763 | Msa0548120:intron | 55.0% | |
| GCAGACCTTGCCAGACACAA+GGG | + | chr4_1:41833752-41833771 | None:intergenic | 55.0% | |
| TGCAGACCTTGCCAGACACA+AGG | + | chr4_1:41833753-41833772 | None:intergenic | 55.0% | |
| TTGTGTCTGGCAAGGTCTGC+AGG | - | chr4_1:41833752-41833771 | Msa0548120:intron | 55.0% | |
| TGTGTCTGGCAAGGTCTGCA+GGG | - | chr4_1:41833753-41833772 | Msa0548120:intron | 55.0% | |
| !! | GGGCCGTTTTCTGAGCATGT+TGG | - | chr4_1:41835748-41835767 | Msa0548120:intron | 55.0% |
| !! | GCATGAGGGGTGTTCTCGTT+TGG | - | chr4_1:41836252-41836271 | Msa0548120:intron | 55.0% |
| GGAACCCTCATCCCTTGATC+TGG | - | chr4_1:41836372-41836391 | Msa0548120:intron | 55.0% | |
| CTGCTGGTCCCAGTTTCATG+AGG | + | chr4_1:41838440-41838459 | None:intergenic | 55.0% | |
| TGACAGCGGTTCTCAACACC+TGG | + | chr4_1:41838568-41838587 | None:intergenic | 55.0% | |
| ! | GGTGCTGGAGTATACGAACC+TGG | - | chr4_1:41838623-41838642 | Msa0548120:intron | 55.0% |
| ! | GTGGGCTGTGTTCAGGGGTT+TGG | - | chr4_1:41833818-41833837 | Msa0548120:intron | 60.0% |
| CGAGAACACCCCTCATGCCT+AGG | + | chr4_1:41836250-41836269 | None:intergenic | 60.0% | |
| AGGACTGGACACGTAGAGCG+TGG | + | chr4_1:41836292-41836311 | None:intergenic | 60.0% | |
| CTGGTTGCGTCGCGTCCCAA+AGG | - | chr4_1:41833588-41833607 | Msa0548120:CDS | 65.0% | |
| ! | TGCTGAACCGGCTCCTGTGC+AGG | - | chr4_1:41834540-41834559 | Msa0548120:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 41832443 | 41839036 | 41832443 | ID=Msa0548120;Name=Msa0548120 |
| chr4_1 | mRNA | 41832443 | 41839036 | 41832443 | ID=Msa0548120-mRNA-1;Parent=Msa0548120;Name=Msa0548120-mRNA-1;_AED=0.11;_eAED=0.11;_QI=161|1|1|1|0.83|0.71|7|384|484 |
| chr4_1 | exon | 41832443 | 41833195 | 41832443 | ID=Msa0548120-mRNA-1:exon:10762;Parent=Msa0548120-mRNA-1 |
| chr4_1 | exon | 41833470 | 41833690 | 41833470 | ID=Msa0548120-mRNA-1:exon:10761;Parent=Msa0548120-mRNA-1 |
| chr4_1 | exon | 41833843 | 41834099 | 41833843 | ID=Msa0548120-mRNA-1:exon:10760;Parent=Msa0548120-mRNA-1 |
| chr4_1 | exon | 41834857 | 41834952 | 41834857 | ID=Msa0548120-mRNA-1:exon:10759;Parent=Msa0548120-mRNA-1 |
| chr4_1 | exon | 41836901 | 41837052 | 41836901 | ID=Msa0548120-mRNA-1:exon:10758;Parent=Msa0548120-mRNA-1 |
| chr4_1 | exon | 41837625 | 41838009 | 41837625 | ID=Msa0548120-mRNA-1:exon:10757;Parent=Msa0548120-mRNA-1 |
| chr4_1 | exon | 41838901 | 41839036 | 41838901 | ID=Msa0548120-mRNA-1:exon:10756;Parent=Msa0548120-mRNA-1 |
| chr4_1 | five_prime_UTR | 41838901 | 41839036 | 41838901 | ID=Msa0548120-mRNA-1:five_prime_utr;Parent=Msa0548120-mRNA-1 |
| chr4_1 | five_prime_UTR | 41837985 | 41838009 | 41837985 | ID=Msa0548120-mRNA-1:five_prime_utr;Parent=Msa0548120-mRNA-1 |
| chr4_1 | CDS | 41837625 | 41837984 | 41837625 | ID=Msa0548120-mRNA-1:cds;Parent=Msa0548120-mRNA-1 |
| chr4_1 | CDS | 41836901 | 41837052 | 41836901 | ID=Msa0548120-mRNA-1:cds;Parent=Msa0548120-mRNA-1 |
| chr4_1 | CDS | 41834857 | 41834952 | 41834857 | ID=Msa0548120-mRNA-1:cds;Parent=Msa0548120-mRNA-1 |
| chr4_1 | CDS | 41833843 | 41834099 | 41833843 | ID=Msa0548120-mRNA-1:cds;Parent=Msa0548120-mRNA-1 |
| chr4_1 | CDS | 41833470 | 41833690 | 41833470 | ID=Msa0548120-mRNA-1:cds;Parent=Msa0548120-mRNA-1 |
| chr4_1 | CDS | 41832827 | 41833195 | 41832827 | ID=Msa0548120-mRNA-1:cds;Parent=Msa0548120-mRNA-1 |
| chr4_1 | three_prime_UTR | 41832443 | 41832826 | 41832443 | ID=Msa0548120-mRNA-1:three_prime_utr;Parent=Msa0548120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
