AlfalfaGEDB | Msa1236360

M. sativa cultivar zhongmu-4 / Msa1236360

KEGG: -
GO: -
PFAM: PF03226.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236360	XP_024629387.1	100.000	106	0	0	1	106	1	106	3.55e-73	222

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236360	sp\|Q9T096\|YIPL6_ARATH	66.667	102	34	0	1	102	1	102	1.60e-46	147

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028620	Msa1236360	0.818296	2.111163e-52	-8.615850e-47
Msa0079370	Msa1236360	0.809084	2.253509e-50	-8.615850e-47
Msa0219590	Msa1236360	0.806279	8.887725e-50	-8.615850e-47
Msa0287740	Msa1236360	0.810861	9.340029e-51	-8.615850e-47
Msa0363790	Msa1236360	0.836941	6.963852e-57	-8.615850e-47
Msa0367870	Msa1236360	0.826722	2.321059e-54	-8.615850e-47
Msa0403640	Msa1236360	0.800049	1.728947e-48	-8.615850e-47
Msa0460590	Msa1236360	0.804917	1.715773e-49	-8.615850e-47
Msa0486690	Msa1236360	0.819496	1.126587e-52	-8.615850e-47
Msa0548120	Msa1236360	0.804137	2.495792e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236360	MtrunA17_Chr8g0346501	100.000	106	0	0	1	106	1	106	3.26e-77	222
Msa1236360	MtrunA17_Chr3g0127211	67.619	105	34	0	1	105	1	105	1.43e-50	155
Msa1236360	MtrunA17_Chr1g0188931	63.725	102	37	0	1	102	1	102	1.13e-47	147
Msa1236360	MtrunA17_Chr5g0436971	50.505	99	49	0	8	106	12	110	1.38e-33	113
Msa1236360	MtrunA17_Chr3g0113291	52.128	94	45	0	8	101	35	128	1.86e-33	113
Msa1236360	MtrunA17_Chr4g0046851	50.000	100	49	1	3	102	8	106	8.28e-31	105
Msa1236360	MtrunA17_Chr7g0242231	48.454	97	50	0	10	106	14	110	4.40e-30	103
Msa1236360	MtrunA17_Chr2g0316921	48.421	95	49	0	8	102	12	106	7.52e-29	100
Msa1236360	MtrunA17_Chr8g0360291	44.211	95	53	0	8	102	12	106	1.91e-26	95.1
Msa1236360	MtrunA17_Chr1g0188951	64.516	62	22	0	44	105	1	62	2.60e-22	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236360	AT4G27745.2	66.667	102	34	0	1	102	1	102	1.63e-47	147
Msa1236360	AT4G27745.3	66.667	102	34	0	1	102	1	102	1.63e-47	147
Msa1236360	AT4G27745.1	66.667	102	34	0	1	102	1	102	1.63e-47	147
Msa1236360	AT4G27745.4	66.667	102	34	0	1	102	1	102	1.63e-47	147
Msa1236360	AT3G11230.1	50.505	99	49	0	8	106	12	110	1.23e-34	115
Msa1236360	AT3G11230.2	50.505	99	49	0	8	106	45	143	4.47e-34	115
Msa1236360	AT3G11230.4	52.174	92	44	0	8	99	12	103	1.76e-33	112
Msa1236360	AT4G27740.1	51.064	94	46	0	9	102	9	102	2.71e-33	112
Msa1236360	AT3G55890.4	52.475	101	47	1	1	101	6	105	3.21e-33	112
Msa1236360	AT3G55890.1	52.475	101	47	1	1	101	6	105	3.21e-33	112

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Find 41 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGATTCCAAAAGAAT+TGG	0.353208	8_2:+15279554	None:intergenic
AAAGTTCACCTGAAAATCTT+TGG	0.258418	8_2:+15279181	None:intergenic
ACCATTCAACAATTAACATT+AGG	0.330744	8_2:+15278017	None:intergenic
AGCAAAGAATATGAATGAGA+AGG	0.555819	8_2:+15279521	None:intergenic
ATAAGCTGTCTATCTTCTTT+AGG	0.260634	8_2:+15278369	None:intergenic
ATCATTAATGGCCGATTTGA+TGG	0.329137	8_2:-15279267	Msa1236360:exon
ATTGTGGAGAAGAACTTGGT+TGG	0.558548	8_2:-15278308	Msa1236360:CDS
CAACAAACCTTCTCTGTACA+AGG	0.478519	8_2:+15277931	None:intergenic
CAACTCTGACATGAAAAGAT+TGG	0.449933	8_2:-15279441	Msa1236360:five_prime_UTR
CATGGAAAGCAACAAGGTTC+TGG	0.376925	8_2:+15279216	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAAAGAATATGAATGAGAA+GGG	+	chr8_2:15277975-15277994	None:intergenic	30.0%
AGCAAAGAATATGAATGAGA+AGG	+	chr8_2:15277976-15277995	None:intergenic	30.0%
AAAGTTCACCTGAAAATCTT+TGG	+	chr8_2:15278316-15278335	None:intergenic	30.0%
AAACGATTCATCCATGAAAA+TGG	-	chr8_2:15278390-15278409	Msa1236360:CDS	30.0%
AAATGGATCATCTAATACTG+TGG	-	chr8_2:15278407-15278426	Msa1236360:CDS	30.0%
GCTTTCATCGTGATTATATT+GGG	+	chr8_2:15278652-15278671	None:intergenic	30.0%
AGCTTTCATCGTGATTATAT+TGG	+	chr8_2:15278653-15278672	None:intergenic	30.0%
TAAAGGAAATGGACAAAATC+CGG	+	chr8_2:15278830-15278849	None:intergenic	30.0%
ATAAGCTGTCTATCTTCTTT+AGG	+	chr8_2:15279128-15279147	None:intergenic	30.0%
GAAATACCTTAAAGCTTATG+AGG	-	chr8_2:15279208-15279227	Msa1236360:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	15277924	15279592	15277924	ID=Msa1236360;Name=Msa1236360
chr8_2	mRNA	15277924	15279592	15277924	ID=Msa1236360-mRNA-1;Parent=Msa1236360;Name=Msa1236360-mRNA-1;_AED=0.24;_eAED=0.24;_QI=212\|1\|1\|1\|0.5\|0.33\|3\|294\|106
chr8_2	exon	15277924	15278445	15277924	ID=Msa1236360-mRNA-1:exon:5829;Parent=Msa1236360-mRNA-1
chr8_2	exon	15279190	15279318	15279190	ID=Msa1236360-mRNA-1:exon:5828;Parent=Msa1236360-mRNA-1
chr8_2	exon	15279417	15279592	15279417	ID=Msa1236360-mRNA-1:exon:5827;Parent=Msa1236360-mRNA-1
chr8_2	five_prime_UTR	15279417	15279592	15279417	ID=Msa1236360-mRNA-1:five_prime_utr;Parent=Msa1236360-mRNA-1
chr8_2	five_prime_UTR	15279283	15279318	15279283	ID=Msa1236360-mRNA-1:five_prime_utr;Parent=Msa1236360-mRNA-1
chr8_2	CDS	15279190	15279282	15279190	ID=Msa1236360-mRNA-1:cds;Parent=Msa1236360-mRNA-1
chr8_2	CDS	15278218	15278445	15278218	ID=Msa1236360-mRNA-1:cds;Parent=Msa1236360-mRNA-1
chr8_2	three_prime_UTR	15277924	15278217	15277924	ID=Msa1236360-mRNA-1:three_prime_utr;Parent=Msa1236360-mRNA-1

Gene Sequence	>Msa1236360 ATGGCCGATTTGATGGGATCACGGGCATACTGCTGCTTCAAGTGCCAGAACCTTGTTGCTTTCCATGATGATATTGTTTCCAAAGATTTTCAGGCAAGCAATGGAAGAGCTTTTCTGTTTTCTCATGCCATGAACATATTTTTGGGACCTAAAGAAGATAGACAGCTTATGACTGGTCTTCACACAGTTGCTGATGTTTTTTGTTCTGATTGTGGAGAAGAACTTGGTTGGAAATACCTTAAAGCTTATGAGGAAACACAGAAGTATAAGGAAGGAAAATGTGTGCTTGAGAAGTTTAAGATTGTTTTGGGAAATGGGTAG
Protein sequence	>Msa1236360 MADLMGSRAYCCFKCQNLVAFHDDIVSKDFQASNGRAFLFSHAMNIFLGPKEDRQLMTGLHTVADVFCSDCGEELGWKYLKAYEETQKYKEGKCVLEKFKIVLGNG*