AlfalfaGEDB | Msa1308870

M. sativa cultivar zhongmu-4 / Msa1308870

KEGG: -
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700
PFAM: PF02893.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308870	XP_024628581.1	96.753	616	9	2	1	605	1	616	0.0	1229

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308870	sp\|F4HVW5\|VAD1_ARATH	48.241	597	253	11	19	603	38	590	2.78e-177	518

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308870	A0A072TJX9	95.513	624	9	2	1	605	1	624	0.0	1226

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1308870	0.807466	4.986908e-50	-8.615850e-47
Msa0002230	Msa1308870	0.804950	1.689222e-49	-8.615850e-47
Msa0003700	Msa1308870	0.800866	1.178774e-48	-8.615850e-47
Msa0003890	Msa1308870	0.869291	3.457499e-66	-8.615850e-47
Msa0006070	Msa1308870	0.808616	2.838189e-50	-8.615850e-47
Msa0006110	Msa1308870	0.864889	8.783738e-65	-8.615850e-47
Msa0007440	Msa1308870	0.843335	1.492867e-58	-8.615850e-47
Msa0007990	Msa1308870	0.825974	3.497961e-54	-8.615850e-47
Msa0009180	Msa1308870	0.842981	1.855139e-58	-8.615850e-47
Msa0011170	Msa1308870	0.821644	3.618574e-53	-8.615850e-47

Showing 1 to 10 of 1,370 entries

Previous1 2 3 4 5…137Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308870	MtrunA17_Chr8g0335361	95.353	624	9	3	1	605	1	623	0.0	1220
Msa1308870	MtrunA17_Chr4g0045581	34.234	111	56	2	54	148	233	342	2.00e-11	67.0
Msa1308870	MtrunA17_Chr4g0045581	26.012	173	122	4	266	436	401	569	4.89e-11	65.5

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308870	AT1G02120.1	48.241	597	253	11	19	603	38	590	2.83e-178	518
Msa1308870	AT1G02120.2	54.157	421	163	5	19	431	38	436	6.70e-150	441
Msa1308870	AT1G02120.3	53.383	399	156	5	19	409	38	414	6.13e-138	408
Msa1308870	AT3G59660.2	31.387	137	73	3	49	169	227	358	6.09e-12	68.9
Msa1308870	AT3G59660.1	31.387	137	73	3	49	169	227	358	6.17e-12	68.9

Showing 1 to 5 of 5 entries

Previous1Next

Find 147 sgRNAs with CRISPR-Local

Find 878 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGCTGCATCTTAC+GGG	0.389632	8_4:+5246621	Msa1308870:CDS
AAAATCGGGTGGCTGCCATG+AGG	0.716133	8_4:+5244875	Msa1308870:CDS
AAACCCATTCTCTTGGCTGC+TGG	0.418508	8_4:-5242305	None:intergenic
AAACGATGCCAGAGCAATTA+TGG	0.303999	8_4:+5240052	Msa1308870:CDS
AAATCACTCACTTCTTCCTG+TGG	0.615306	8_4:-5237234	None:intergenic
AACAAATGTAGTTGACAAAT+AGG	0.368964	8_4:-5238815	None:intergenic
AACACGCGTATAAGCTTCTG+GGG	0.676818	8_4:-5243779	None:intergenic
AACACTGTGAATAGCATTGA+TGG	0.415243	8_4:-5249209	None:intergenic
AACGGGATGTTGCGGCGATT+CGG	0.381474	8_4:-5236113	None:intergenic
AAGACGGGAGAAACTTCAGA+AGG	0.663194	8_4:+5249139	Msa1308870:CDS

Showing 1 to 10 of 147 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACGGTTACAAAACAAAAGAA+AGG	-	chr8_4:5235970-5235989	None:intergenic	30.0%
AGAATTGAAAAAGTTAGGAG+AGG	-	chr8_4:5236185-5236204	None:intergenic	30.0%
TCGGAAGAATTGAAAAAGTT+AGG	-	chr8_4:5236190-5236209	None:intergenic	30.0%
TTTCAATTCTTCCGATATTC+CGG	+	chr8_4:5236195-5236214	Msa1308870:CDS	30.0%
TCAACATGTCATATATCCTA+TGG	-	chr8_4:5236274-5236293	None:intergenic	30.0%
GAATTGCAGAAACTGTATAT+AGG	-	chr8_4:5237141-5237160	None:intergenic	30.0%
TTATAGCATCTATTTGGAGA+TGG	-	chr8_4:5237261-5237280	None:intergenic	30.0%
GAAAACCAATAAAGAAACGA+TGG	-	chr8_4:5237296-5237315	None:intergenic	30.0%
AATAAGCTGTTTATCCAAAC+AGG	+	chr8_4:5237808-5237827	Msa1308870:intron	30.0%
AACTCGACAAGGATAATTTA+GGG	-	chr8_4:5237834-5237853	None:intergenic	30.0%

Showing 1 to 10 of 878 entries

Previous1 2 3 4 5…88Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	5235836	5250591	5235836	ID=Msa1308870;Name=Msa1308870
chr8_4	mRNA	5235836	5250591	5235836	ID=Msa1308870-mRNA-1;Parent=Msa1308870;Name=Msa1308870-mRNA-1;_AED=0.29;_eAED=0.29;_QI=252\|0.94\|0.94\|1\|0.88\|0.88\|18\|297\|605
chr8_4	exon	5235836	5236216	5235836	ID=Msa1308870-mRNA-1:exon:1633;Parent=Msa1308870-mRNA-1
chr8_4	exon	5237186	5237245	5237186	ID=Msa1308870-mRNA-1:exon:1634;Parent=Msa1308870-mRNA-1
chr8_4	exon	5238568	5238618	5238568	ID=Msa1308870-mRNA-1:exon:1635;Parent=Msa1308870-mRNA-1
chr8_4	exon	5238804	5238869	5238804	ID=Msa1308870-mRNA-1:exon:1636;Parent=Msa1308870-mRNA-1
chr8_4	exon	5239755	5239850	5239755	ID=Msa1308870-mRNA-1:exon:1637;Parent=Msa1308870-mRNA-1
chr8_4	exon	5239981	5240082	5239981	ID=Msa1308870-mRNA-1:exon:1638;Parent=Msa1308870-mRNA-1
chr8_4	exon	5242289	5242389	5242289	ID=Msa1308870-mRNA-1:exon:1639;Parent=Msa1308870-mRNA-1
chr8_4	exon	5242472	5242656	5242472	ID=Msa1308870-mRNA-1:exon:1640;Parent=Msa1308870-mRNA-1
chr8_4	exon	5243779	5243819	5243779	ID=Msa1308870-mRNA-1:exon:1641;Parent=Msa1308870-mRNA-1
chr8_4	exon	5243940	5244027	5243940	ID=Msa1308870-mRNA-1:exon:1642;Parent=Msa1308870-mRNA-1
chr8_4	exon	5244208	5244294	5244208	ID=Msa1308870-mRNA-1:exon:1643;Parent=Msa1308870-mRNA-1
chr8_4	exon	5244871	5244925	5244871	ID=Msa1308870-mRNA-1:exon:1644;Parent=Msa1308870-mRNA-1
chr8_4	exon	5245096	5245162	5245096	ID=Msa1308870-mRNA-1:exon:1645;Parent=Msa1308870-mRNA-1
chr8_4	exon	5246586	5246685	5246586	ID=Msa1308870-mRNA-1:exon:1646;Parent=Msa1308870-mRNA-1
chr8_4	exon	5248668	5248729	5248668	ID=Msa1308870-mRNA-1:exon:1647;Parent=Msa1308870-mRNA-1
chr8_4	exon	5248826	5248865	5248826	ID=Msa1308870-mRNA-1:exon:1648;Parent=Msa1308870-mRNA-1
chr8_4	exon	5249134	5249384	5249134	ID=Msa1308870-mRNA-1:exon:1649;Parent=Msa1308870-mRNA-1
chr8_4	exon	5250058	5250591	5250058	ID=Msa1308870-mRNA-1:exon:1650;Parent=Msa1308870-mRNA-1
chr8_4	five_prime_UTR	5235836	5236087	5235836	ID=Msa1308870-mRNA-1:five_prime_utr;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5236088	5236216	5236088	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5237186	5237245	5237186	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5238568	5238618	5238568	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5238804	5238869	5238804	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5239755	5239850	5239755	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5239981	5240082	5239981	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5242289	5242389	5242289	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5242472	5242656	5242472	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5243779	5243819	5243779	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5243940	5244027	5243940	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5244208	5244294	5244208	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5244871	5244925	5244871	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5245096	5245162	5245096	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5246586	5246685	5246586	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5248668	5248729	5248668	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5248826	5248865	5248826	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5249134	5249384	5249134	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	CDS	5250058	5250294	5250058	ID=Msa1308870-mRNA-1:cds;Parent=Msa1308870-mRNA-1
chr8_4	three_prime_UTR	5250295	5250591	5250295	ID=Msa1308870-mRNA-1:three_prime_utr;Parent=Msa1308870-mRNA-1

Gene Sequence

>Msa1308870

ATGGCTTCTACGGCTGTTGCAACCGCCGAATCGCCGCAACATCCCGTTCAACCTTCTCCTTCTTCCTCCGTTGATCGTAACCATTCTTCCAATTCCTCTCCTAACTTTTTCAATTCTTCCGATATTCCGTCTCCGGATGCATTAAAGAGCGAAGAGTATCGTCAACTGTTTCGCCTTCCACAGGAAGAAGTCCTAATTGAAGATTTTAATTGTGCCCTCCAGGAAAACATACTTATTCAGGGTCATATGTACCTATTTGTCAACTACATTTGTTTCTACTCGAACATTTTTGGGTTTGAGACAAAGAGAATTATTCCTCTCCATGAAATCACAGGCGTACGGAGGGCAAAGACAGCTGGGATATTTCCCAATGCCATTGAGATTATATCCGGAAGCAAGAAGTACTTCTTTGCATCCTTCCTATCCCGTGATGAAGCTTTTAAGATTATTAATGACGGATGGTTGAGACAGGGAAACGATGCCAGAGCAATTATGGAACAGCAGGAATCGATATCGGAGTCCAGCAGCCAAGAGAATGGGTTTTTAACTATTGAAAATGTGAAAAGTTCTGATGTACTCTACAATGAGGCACTTTCTACCGACTTGAGCAAAGGTAATTCTATTTGCAAAGACTTGGGAGTTCCATCCATTACTGGAGAAGACCCTATATTGATAGTTGTTCCAGAGAAGCAATCCAGCGCTGAACAGGTTGCTGAGTCTGAATTGAATAACAGCGATCCCCCTAGATTGGGTTGCAACTGGAATGAGGAGGATATTGATGCTCCGACAACCCCAGAAGCTTATACGCGTGTTGCAGAATCAATATTTCCGATAAAGGTTGAAGACTTCTTTTGGTACTTTTTCTCGGATGATGCTATAAATTTTCTTGAGTCTTATCGTAAAAGATGCGGAGATAAAGACTTCAAGTGTGCTTCATGGCATCCTCAAGAGAAATTTGGGTATGCTCGTGAACTGTCATTTCAACATCCAATAAAAATTTATCTTGGAGCAAAATCGGGTGGCTGCCATGAGGTCCAGAAATATCGAGTTTATAAGAACAGTCATTTGGTTATACAGACATCACAAGAAGTCAGTGACGTACCTTATGCAGATTACTTTCTTGTCGAGGGGCTGTGGAATGTGGAGAGAGACAAGGATGAATCAAAAGAAAGCTGCATCTTACGGGTATATGTGAATGTGGCATTTTCTAAGAAAACTATATTTAGAGGAAAAATAGTACAGTCAACAATTGACGAATGTAAAGACGCTTATGCATTGTGGATAAACATGGCACATGAGTTCTTGCAAGAGAAGAACCTTGTAAAACAAGAAGCAAAGACGGGAGAAACTTCAGAAGGATCTCAGGATCAAAGTAATCCTACAGGGAGGCAAACTACATCCGATGCCATCAATGCTATTCACAGTGTTGGTGCTCAATTGCAAGATAATTTCATTGACACGTCGTCGTCTGTTCCATCTTTGTTCAAAGAGTTTGCGACAAAGATTAGGTCATCTTTGAAAAGTCAGAGCAATCTTTCGCTGCTGCTTGTTACCATTTTTGCTCTGATTTTCTTCATGCAGCAGTTTAGCATACTGGTGCTCTTGGCCAGACCTCAACATATACATATGAACCCTCCTGTAGACTTTATGAATAGGATGGACAATGGAGTGACTAGAAGTCCTTCGGACATAGCGTGGCTGGAGAAAAGAGTTCATCACCTTAAAGATGAGATGTACATGGTTGAGACTAGGCTTGAAAGAATGCGGTATGAGCATGCTCTCTTAAAAAAGCAACTAAAAGATCTAGAACATAAATAA

Protein sequence

>Msa1308870

MASTAVATAESPQHPVQPSPSSSVDRNHSSNSSPNFFNSSDIPSPDALKSEEYRQLFRLPQEEVLIEDFNCALQENILIQGHMYLFVNYICFYSNIFGFETKRIIPLHEITGVRRAKTAGIFPNAIEIISGSKKYFFASFLSRDEAFKIINDGWLRQGNDARAIMEQQESISESSSQENGFLTIENVKSSDVLYNEALSTDLSKGNSICKDLGVPSITGEDPILIVVPEKQSSAEQVAESELNNSDPPRLGCNWNEEDIDAPTTPEAYTRVAESIFPIKVEDFFWYFFSDDAINFLESYRKRCGDKDFKCASWHPQEKFGYARELSFQHPIKIYLGAKSGGCHEVQKYRVYKNSHLVIQTSQEVSDVPYADYFLVEGLWNVERDKDESKESCILRVYVNVAFSKKTIFRGKIVQSTIDECKDAYALWINMAHEFLQEKNLVKQEAKTGETSEGSQDQSNPTGRQTTSDAINAIHSVGAQLQDNFIDTSSSVPSLFKEFATKIRSSLKSQSNLSLLLVTIFALIFFMQQFSILVLLARPQHIHMNPPVDFMNRMDNGVTRSPSDIAWLEKRVHHLKDEMYMVETRLERMRYEHALLKKQLKDLEHK*