Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683980 | XP_013456085.1 | 96.074 | 484 | 19 | 0 | 1 | 484 | 1 | 484 | 0.0 | 970 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683980 | sp|Q10137|SEC14_SCHPO | 26.966 | 267 | 171 | 7 | 155 | 400 | 2 | 265 | 8.17e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683980 | A0A072UL27 | 96.074 | 484 | 19 | 0 | 1 | 484 | 1 | 484 | 0.0 | 970 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa0683980 | 0.855228 | 7.262645e-62 | -8.615850e-47 |
| Msa0032080 | Msa0683980 | 0.812100 | 5.023577e-51 | -8.615850e-47 |
| Msa0051020 | Msa0683980 | 0.806442 | 8.211309e-50 | -8.615850e-47 |
| Msa0053860 | Msa0683980 | 0.811720 | 6.079498e-51 | -8.615850e-47 |
| Msa0072340 | Msa0683980 | 0.810616 | 1.055165e-50 | -8.615850e-47 |
| Msa0072720 | Msa0683980 | 0.813452 | 2.541812e-51 | -8.615850e-47 |
| Msa0076290 | Msa0683980 | 0.805435 | 1.336613e-49 | -8.615850e-47 |
| Msa0106620 | Msa0683980 | 0.802559 | 5.297710e-49 | -8.615850e-47 |
| Msa0603140 | Msa0683980 | 0.913036 | 9.797550e-84 | -8.615850e-47 |
| Msa0613110 | Msa0683980 | 0.800185 | 1.622939e-48 | -8.615850e-47 |
| Msa0623070 | Msa0683980 | 0.800068 | 1.714434e-48 | -8.615850e-47 |
| Msa0624060 | Msa0683980 | 0.814325 | 1.632197e-51 | -8.615850e-47 |
| Msa0644170 | Msa0683980 | 0.987476 | 2.140912e-170 | -8.615850e-47 |
| Msa0676130 | Msa0683980 | 0.813075 | 3.074903e-51 | -8.615850e-47 |
| Msa0676180 | Msa0683980 | 0.816982 | 4.175882e-52 | -8.615850e-47 |
| Msa0683980 | Msa0697590 | 0.802074 | 6.667013e-49 | -8.615850e-47 |
| Msa0683980 | Msa0703440 | 0.801294 | 9.635594e-49 | -8.615850e-47 |
| Msa0683980 | Msa0760180 | 0.800483 | 1.410818e-48 | -8.615850e-47 |
| Msa0683980 | Msa0763890 | 0.804586 | 2.011558e-49 | -8.615850e-47 |
| Msa0683980 | Msa0763920 | 0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa0683980 | Msa0784480 | 0.835465 | 1.652162e-56 | -8.615850e-47 |
| Msa0683980 | Msa0796250 | 0.825958 | 3.528390e-54 | -8.615850e-47 |
| Msa0683980 | Msa0796300 | 0.813512 | 2.465198e-51 | -8.615850e-47 |
| Msa0683980 | Msa0797770 | 0.803799 | 2.933431e-49 | -8.615850e-47 |
| Msa0683980 | Msa0814710 | 0.806534 | 7.852774e-50 | -8.615850e-47 |
| Msa0683980 | Msa0818060 | 0.828837 | 7.199677e-55 | -8.615850e-47 |
| Msa0683980 | Msa0822500 | 0.800118 | 1.674473e-48 | -8.615850e-47 |
| Msa0683980 | Msa0835230 | 0.804608 | 1.990975e-49 | -8.615850e-47 |
| Msa0683980 | Msa0837890 | 0.800168 | 1.635433e-48 | -8.615850e-47 |
| Msa0683980 | Msa0844570 | 0.809039 | 2.304426e-50 | -8.615850e-47 |
| Msa0683980 | Msa0855870 | 0.814554 | 1.452388e-51 | -8.615850e-47 |
| Msa0683980 | Msa0858390 | 0.801362 | 9.332644e-49 | -8.615850e-47 |
| Msa0683980 | Msa0894710 | 0.809127 | 2.206006e-50 | -8.615850e-47 |
| Msa0683980 | Msa0899970 | 0.841773 | 3.877804e-58 | -8.615850e-47 |
| Msa0683980 | Msa0933760 | 0.806347 | 8.595538e-50 | -8.615850e-47 |
| Msa0683980 | Msa0934140 | 0.811989 | 5.312526e-51 | -8.615850e-47 |
| Msa0683980 | Msa0965080 | 0.852349 | 4.894349e-61 | -8.615850e-47 |
| Msa0683980 | Msa0965290 | 0.861521 | 9.674910e-64 | -8.615850e-47 |
| Msa0683980 | Msa0999680 | 0.861285 | 1.142315e-63 | -8.615850e-47 |
| Msa0683980 | Msa1019000 | 0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0683980 | Msa1034500 | 0.814326 | 1.631152e-51 | -8.615850e-47 |
| Msa0683980 | Msa1145810 | 0.808988 | 2.362437e-50 | -8.615850e-47 |
| Msa0683980 | Msa1155170 | -0.802306 | 5.973772e-49 | -8.615850e-47 |
| Msa0683980 | Msa1225860 | -0.807078 | 6.026182e-50 | -8.615850e-47 |
| Msa0683980 | Msa1236360 | 0.809342 | 1.983898e-50 | -8.615850e-47 |
| Msa0683980 | Msa1246360 | 0.814607 | 1.413758e-51 | -8.615850e-47 |
| Msa0683980 | Msa1250530 | 0.802783 | 4.762478e-49 | -8.615850e-47 |
| Msa0683980 | Msa1277690 | 0.810054 | 1.394971e-50 | -8.615850e-47 |
| Msa0683980 | Msa1308870 | 0.825898 | 3.646994e-54 | -8.615850e-47 |
| Msa0683980 | Msa1325410 | -0.824521 | 7.716050e-54 | -8.615850e-47 |
| Msa0683980 | Msa1331000 | 0.810490 | 1.123505e-50 | -8.615850e-47 |
| Msa0683980 | Msa1368500 | 0.814400 | 1.571081e-51 | -8.615850e-47 |
| Msa0683980 | Msa1369920 | -0.815447 | 9.203268e-52 | -8.615850e-47 |
| Msa0683980 | Msa1378410 | 0.818153 | 2.273749e-52 | -8.615850e-47 |
| Msa0683980 | Msa1394380 | 0.819863 | 9.287871e-53 | -8.615850e-47 |
| Msa0683980 | Msa1398370 | 0.804273 | 2.338227e-49 | -8.615850e-47 |
| Msa0683980 | Msa1404300 | 0.805957 | 1.038786e-49 | -8.615850e-47 |
| Msa0683980 | Msa1423780 | 0.801606 | 8.318288e-49 | -8.615850e-47 |
| Msa0683980 | Msa1442920 | 0.805802 | 1.119663e-49 | -8.615850e-47 |
| Msa0683980 | Msa1448560 | 0.811745 | 6.003093e-51 | -8.615850e-47 |
| Msa0683980 | Msa1452710 | 0.807707 | 4.431029e-50 | -8.615850e-47 |
| Msa0683980 | Msa1458680 | 0.810479 | 1.129148e-50 | -8.615850e-47 |
| Msa0683980 | Msa1463900 | 0.814784 | 1.291348e-51 | -8.615850e-47 |
| Msa0124320 | Msa0683980 | 0.844086 | 9.401357e-59 | -8.615850e-47 |
| Msa0172080 | Msa0683980 | 0.807162 | 5.783314e-50 | -8.615850e-47 |
| Msa0186950 | Msa0683980 | 0.808763 | 2.639887e-50 | -8.615850e-47 |
| Msa0189040 | Msa0683980 | 0.817021 | 4.092405e-52 | -8.615850e-47 |
| Msa0189710 | Msa0683980 | 0.824394 | 8.266582e-54 | -8.615850e-47 |
| Msa0204840 | Msa0683980 | 0.805435 | 1.336613e-49 | -8.615850e-47 |
| Msa0219590 | Msa0683980 | 0.801763 | 7.723971e-49 | -8.615850e-47 |
| Msa0232020 | Msa0683980 | 0.831638 | 1.489991e-55 | -8.615850e-47 |
| Msa0232090 | Msa0683980 | 0.822064 | 2.892882e-53 | -8.615850e-47 |
| Msa0367870 | Msa0683980 | 0.810993 | 8.742427e-51 | -8.615850e-47 |
| Msa0411390 | Msa0683980 | 0.802723 | 4.899254e-49 | -8.615850e-47 |
| Msa0432160 | Msa0683980 | 0.818893 | 1.545699e-52 | -8.615850e-47 |
| Msa0450400 | Msa0683980 | -0.808143 | 3.579376e-50 | -8.615850e-47 |
| Msa0464390 | Msa0683980 | 0.802007 | 6.880291e-49 | -8.615850e-47 |
| Msa0476680 | Msa0683980 | 0.819452 | 1.153007e-52 | -8.615850e-47 |
| Msa0241140 | Msa0683980 | 0.800637 | 1.312832e-48 | -8.615850e-47 |
| Msa0274980 | Msa0683980 | 0.804981 | 1.664176e-49 | -8.615850e-47 |
| Msa0287870 | Msa0683980 | 0.812875 | 3.401938e-51 | -8.615850e-47 |
| Msa0310090 | Msa0683980 | 0.821116 | 4.791641e-53 | -8.615850e-47 |
| Msa0342010 | Msa0683980 | 0.807425 | 5.086164e-50 | -8.615850e-47 |
| Msa0363790 | Msa0683980 | 0.815418 | 9.340855e-52 | -8.615850e-47 |
| Msa0486690 | Msa0683980 | 0.803416 | 3.522090e-49 | -8.615850e-47 |
| Msa0521010 | Msa0683980 | 0.821192 | 4.600225e-53 | -8.615850e-47 |
| Msa0548120 | Msa0683980 | 0.924560 | 5.985952e-90 | -8.615850e-47 |
| Msa0583360 | Msa0683980 | -0.804482 | 2.115115e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683980 | MtrunA17_Chr4g0031141 | 96.074 | 484 | 19 | 0 | 1 | 484 | 1 | 484 | 0.0 | 970 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683980 | AT3G46450.1 | 50.513 | 487 | 230 | 5 | 1 | 482 | 1 | 481 | 2.23e-162 | 469 |
| Msa0683980 | AT3G46450.3 | 50.513 | 487 | 230 | 5 | 1 | 482 | 1 | 481 | 2.23e-162 | 469 |
| Msa0683980 | AT3G46450.2 | 49.697 | 495 | 230 | 6 | 1 | 482 | 1 | 489 | 2.38e-159 | 461 |
Find 143 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAAGTATTATCGTATTT+TGG | 0.089032 | 4_4:-47043461 | Msa0683980:CDS |
| CAATAAAAGGTGTGTGTTTA+TGG | 0.148166 | 4_4:-47043247 | Msa0683980:three_prime_UTR |
| TGAATTGCCTTCGGTTTATA+TGG | 0.190483 | 4_4:-47048610 | Msa0683980:exon |
| AGGATTTGTCTTTGTGAATT+AGG | 0.190565 | 4_4:-47043334 | Msa0683980:three_prime_UTR |
| CACAAAACCAAATACCTTTC+TGG | 0.191441 | 4_4:+47045433 | None:intergenic |
| ACTAGGGAAGTAAACTAATT+TGG | 0.213604 | 4_4:+47043387 | None:intergenic |
| TTGCCTACCCACCATTTAAA+TGG | 0.217975 | 4_4:-47048299 | Msa0683980:CDS |
| ATGTGTGAATTGTTCTAAAA+TGG | 0.228006 | 4_4:-47043652 | Msa0683980:CDS |
| AACATCTAATATAGTTATTT+AGG | 0.231674 | 4_4:+47043174 | None:intergenic |
| TTCAAAAGTGGGCTGTGTTC+AGG | 0.251395 | 4_4:-47048275 | Msa0683980:CDS |
| TCAGTATCACAGGTAGAATA+TGG | 0.282203 | 4_4:-47044261 | Msa0683980:intron |
| TTGTGTCTGGCAAGGTCTGC+AGG | 0.284744 | 4_4:-47048334 | Msa0683980:CDS |
| CACAGCTCAGCTGCAATAAA+AGG | 0.287535 | 4_4:-47043260 | Msa0683980:three_prime_UTR |
| TTCATCTTTCTCCTCAAATC+AGG | 0.345445 | 4_4:-47049557 | Msa0683980:intron |
| CCAGCAGCAGCAGAATTGTT+AGG | 0.345640 | 4_4:-47043593 | Msa0683980:CDS |
| ATATCTTTGTGCAAAGCCTT+TGG | 0.349948 | 4_4:+47048482 | None:intergenic |
| AGAGTGCAACCTCATGAAAC+TGG | 0.353698 | 4_4:-47043618 | Msa0683980:CDS |
| AGATAAAATATCTCTAGTTT+TGG | 0.358304 | 4_4:-47043287 | Msa0683980:three_prime_UTR |
| GTGGGCTGTGTTCAGGGGTT+TGG | 0.370104 | 4_4:-47048268 | Msa0683980:CDS |
| GCAATGGAAAGAACTAATAA+TGG | 0.372345 | 4_4:+47047647 | None:intergenic |
| GAGCAAATCGAGGTTTATCT+TGG | 0.375243 | 4_4:+47044441 | None:intergenic |
| TATCTTTGTGCAAAGCCTTT+GGG | 0.386982 | 4_4:+47048483 | None:intergenic |
| AATAAAAGGTGTGTGTTTAT+GGG | 0.388612 | 4_4:-47043246 | Msa0683980:three_prime_UTR |
| ACTACGTCTACATCCAACTA+TGG | 0.397066 | 4_4:-47043535 | Msa0683980:CDS |
| CCCTGTCTCATTGTAAGGCT+TGG | 0.403991 | 4_4:-47044488 | Msa0683980:CDS |
| TGTGGTCAAATATGGTGTTC+TGG | 0.416093 | 4_4:-47044535 | Msa0683980:CDS |
| TGAAAAGTTAACCTGATTTG+AGG | 0.416231 | 4_4:+47049546 | None:intergenic |
| AGATTACCTGAAGAAAAGTC+TGG | 0.416322 | 4_4:+47044052 | None:intergenic |
| AGAGTAGATGCCCTTGTGTC+TGG | 0.419220 | 4_4:-47048347 | Msa0683980:CDS |
| ACAGACCCTGTCTCATTGTA+AGG | 0.420449 | 4_4:-47044493 | Msa0683980:CDS |
| ATCTTGCAGAATGGAAGAAC+AGG | 0.423646 | 4_4:+47044140 | None:intergenic |
| GGTCATAGTTGTTGCTTTGA+CGG | 0.427086 | 4_4:+47043502 | None:intergenic |
| GTTGTCATAGCTCTTGGTGC+TGG | 0.427292 | 4_4:-47043438 | Msa0683980:CDS |
| TGCTGAACCGGCTCCTGTGC+AGG | 0.432616 | 4_4:-47047546 | Msa0683980:CDS |
| CAGAGAAACTGAATTGCCTT+CGG | 0.435592 | 4_4:-47048619 | Msa0683980:five_prime_UTR |
| TTCAGAAATATCTGCTGAAC+CGG | 0.436907 | 4_4:-47047558 | Msa0683980:CDS |
| TCAACACTGCCATCATATCT+TGG | 0.436939 | 4_4:-47043687 | Msa0683980:CDS |
| GCAATAACACGAGCAATTGC+TGG | 0.437422 | 4_4:+47044075 | None:intergenic |
| GCTGGAAATGTGGTCAAATA+TGG | 0.437920 | 4_4:-47044543 | Msa0683980:CDS |
| TCAAAAGTGGGCTGTGTTCA+GGG | 0.438998 | 4_4:-47048274 | Msa0683980:CDS |
| GAACATGCGTCAATTATAGA+TGG | 0.444032 | 4_4:+47043048 | None:intergenic |
| GAATTGCCTTCGGTTTATAT+GGG | 0.445226 | 4_4:-47048609 | Msa0683980:exon |
| CCTAACAATTCTGCTGCTGC+TGG | 0.448203 | 4_4:+47043593 | None:intergenic |
| AACAAACAACCAAGACGATT+AGG | 0.448537 | 4_4:+47044111 | None:intergenic |
| ACGAACCTGGTGTGTAAGAT+TGG | 0.449481 | 4_4:-47043410 | Msa0683980:exon |
| CCTGTCTCATTGTAAGGCTT+GGG | 0.451557 | 4_4:-47044487 | Msa0683980:CDS |
| CCCTCAAATTACAGTATTGG+TGG | 0.455195 | 4_4:-47044211 | Msa0683980:CDS |
| CAGTATCACAGGTAGAATAT+GGG | 0.455947 | 4_4:-47044260 | Msa0683980:CDS |
| AAGGGATTAGTTTGCCAGAA+AGG | 0.456937 | 4_4:-47045447 | Msa0683980:intron |
| GACTTTGGAAGCAGTGCTGT+GGG | 0.461131 | 4_4:-47048429 | Msa0683980:CDS |
| TAAAACTTCAGGAGCTCTCT+CGG | 0.463316 | 4_4:+47045516 | None:intergenic |
| AATTCTTTCAGTAGAAGAGC+TGG | 0.470395 | 4_4:-47044561 | Msa0683980:CDS |
| TTGTAGAGAACACCTCTAGT+AGG | 0.473771 | 4_4:-47043354 | Msa0683980:three_prime_UTR |
| TGCAGGATAATTTGAATACT+AGG | 0.474906 | 4_4:-47047529 | Msa0683980:intron |
| CCCAAGCCTTACAATGAGAC+AGG | 0.475196 | 4_4:+47044487 | None:intergenic |
| CATTTAAATGGATTCAAAAG+TGG | 0.478870 | 4_4:-47048287 | Msa0683980:CDS |
| AAATTATCCTGCACAGGAGC+CGG | 0.479392 | 4_4:+47047539 | None:intergenic |
| CCACCAATACTGTAATTTGA+GGG | 0.482481 | 4_4:+47044211 | None:intergenic |
| CGGTCATCTAATACCATAGT+TGG | 0.485418 | 4_4:+47043522 | None:intergenic |
| TTGCTGCTTTAGAAGCTGTA+AGG | 0.485821 | 4_4:-47048380 | Msa0683980:CDS |
| TCCACCAATACTGTAATTTG+AGG | 0.487804 | 4_4:+47044210 | None:intergenic |
| CTACAAATTTATTTCAACTA+GGG | 0.489309 | 4_4:+47043371 | None:intergenic |
| AAACCCTCAAATTACAGTAT+TGG | 0.490708 | 4_4:-47044214 | Msa0683980:CDS |
| AACGAAGAGCTGGAAAATCA+AGG | 0.492588 | 4_4:-47045466 | Msa0683980:CDS |
| GCGTATTGTCTTCTTGATTG+AGG | 0.494104 | 4_4:+47044601 | None:intergenic |
| AAACAAAACAGTGCTATCAC+TGG | 0.494792 | 4_4:-47048543 | Msa0683980:CDS |
| GATCACTTTCCTAATCGTCT+TGG | 0.495856 | 4_4:-47044120 | Msa0683980:CDS |
| TGTGTGAATTGTTCTAAAAT+GGG | 0.496722 | 4_4:-47043651 | Msa0683980:CDS |
| CAGCAGCAGCAGAATTGTTA+GGG | 0.497606 | 4_4:-47043592 | Msa0683980:CDS |
| TGTGTCTGGCAAGGTCTGCA+GGG | 0.502343 | 4_4:-47048333 | Msa0683980:CDS |
| ATTTGCATGGGAATTCTCAA+TGG | 0.503124 | 4_4:+47044171 | None:intergenic |
| GACTCAACTCAACGAAGAGC+TGG | 0.511333 | 4_4:-47045476 | Msa0683980:CDS |
| ATTTAAATGGATTCAAAAGT+GGG | 0.513377 | 4_4:-47048286 | Msa0683980:CDS |
| GATCTTTGCTTCAGTATCAC+AGG | 0.515027 | 4_4:-47044271 | Msa0683980:intron |
| AGCAAATCGAGGTTTATCTT+GGG | 0.515766 | 4_4:+47044442 | None:intergenic |
| AAAACTTCAGGAGCTCTCTC+GGG | 0.516604 | 4_4:+47045517 | None:intergenic |
| CAAGAAGACAATACGCTGGC+GGG | 0.519577 | 4_4:-47044594 | Msa0683980:CDS |
| TGTCTTTGTGAATTAGGAGG+TGG | 0.521353 | 4_4:-47043328 | Msa0683980:three_prime_UTR |
| TCTACAAATTTATTTCAACT+AGG | 0.523383 | 4_4:+47043370 | None:intergenic |
| TGCAGACCTTGCCAGACACA+AGG | 0.523801 | 4_4:+47048336 | None:intergenic |
| TTTAGTTGAAGTTGTTTAGA+CGG | 0.524035 | 4_4:+47049600 | None:intergenic |
| CACCATGCGTCAATGAAACA+AGG | 0.525789 | 4_4:+47048451 | None:intergenic |
| AGATAAACCTCGATTTGCTC+AGG | 0.528310 | 4_4:-47044438 | Msa0683980:CDS |
| ATTTAAATGGTGGGTAGGCA+AGG | 0.528331 | 4_4:+47048301 | None:intergenic |
| AACAGCCTTTACTGATGCAC+TGG | 0.530440 | 4_4:-47047624 | Msa0683980:CDS |
| TTGTCTTCTTGATTGAGGTA+AGG | 0.532061 | 4_4:+47044606 | None:intergenic |
| AATCCATTTAAATGGTGGGT+AGG | 0.532716 | 4_4:+47048296 | None:intergenic |
| TTTGAATCCATTTAAATGGT+GGG | 0.533081 | 4_4:+47048292 | None:intergenic |
| TCAAATATGGTGTTCTGGCA+TGG | 0.535129 | 4_4:-47044530 | Msa0683980:CDS |
| ACATTCCAGTGCATCAGTAA+AGG | 0.536622 | 4_4:+47047619 | None:intergenic |
| TCATTGACGCATGGTGACTT+TGG | 0.537854 | 4_4:-47048444 | Msa0683980:CDS |
| GTATTCAAATTATCCTGCAC+AGG | 0.542724 | 4_4:+47047533 | None:intergenic |
| ATGCGTCAATTATAGATGGC+TGG | 0.544307 | 4_4:+47043052 | None:intergenic |
| CTTCGGTTTATATGGGAGAG+AGG | 0.544472 | 4_4:-47048602 | Msa0683980:exon |
| ACAGGATCTCAGTATTTGCA+TGG | 0.546008 | 4_4:+47044158 | None:intergenic |
| GGGTTTGGTTAAAAGCATGC+AGG | 0.548426 | 4_4:-47048253 | Msa0683980:intron |
| CTGCTGGTCCCAGTTTCATG+AGG | 0.549096 | 4_4:+47043609 | None:intergenic |
| GTTATCTAGTAGTATCTACA+TGG | 0.551136 | 4_4:-47043154 | Msa0683980:three_prime_UTR |
| CAAAAGTGGGCTGTGTTCAG+GGG | 0.551310 | 4_4:-47048273 | Msa0683980:CDS |
| ATTTGTCTTTGTGAATTAGG+AGG | 0.559115 | 4_4:-47043331 | Msa0683980:three_prime_UTR |
| CTGGTTGCGTCGCGTCCCAA+AGG | 0.563821 | 4_4:-47048498 | Msa0683980:CDS |
| CAGCTGCCTCCAAGATATGA+TGG | 0.565306 | 4_4:+47043678 | None:intergenic |
| AGATGCCCTTGTGTCTGGCA+AGG | 0.565370 | 4_4:-47048342 | Msa0683980:CDS |
| TTCGGTTTATATGGGAGAGA+GGG | 0.566140 | 4_4:-47048601 | Msa0683980:exon |
| ATCAGTAAAGGCTGTTGCAA+TGG | 0.567300 | 4_4:+47047631 | None:intergenic |
| TGACTTTGGAAGCAGTGCTG+TGG | 0.568986 | 4_4:-47048430 | Msa0683980:CDS |
| GGTTTATATGGGAGAGAGGG+TGG | 0.571830 | 4_4:-47048598 | Msa0683980:exon |
| ACGAAGAGCTGGAAAATCAA+GGG | 0.572330 | 4_4:-47045465 | Msa0683980:CDS |
| TGTGAATTAGGAGGTGGCAA+TGG | 0.572346 | 4_4:-47043322 | Msa0683980:three_prime_UTR |
| CCCCTTGTTTCATTGACGCA+TGG | 0.577087 | 4_4:-47048453 | Msa0683980:CDS |
| AGGAAAGTGATCTTGCAGAA+TGG | 0.579301 | 4_4:+47044131 | None:intergenic |
| ACACTGCCATCATATCTTGG+AGG | 0.583075 | 4_4:-47043684 | Msa0683980:CDS |
| ACAGTATTGGTGGACTGTGA+AGG | 0.583388 | 4_4:-47044201 | Msa0683980:CDS |
| TGGGATAGCTTGCAGCACAT+TGG | 0.587085 | 4_4:-47044468 | Msa0683980:CDS |
| GATTACCTGAAGAAAAGTCT+GGG | 0.589318 | 4_4:+47044053 | None:intergenic |
| TTTGGCCAATCTTACACACC+AGG | 0.590862 | 4_4:+47043405 | None:intergenic |
| AACAAAACAGTGCTATCACT+GGG | 0.597539 | 4_4:-47048542 | Msa0683980:CDS |
| CTCTCTCCCATATAAACCGA+AGG | 0.598494 | 4_4:+47048603 | None:intergenic |
| TAGAAGCTGTGTAAAATCTG+TGG | 0.605768 | 4_4:+47044648 | None:intergenic |
| CAGGATCTCAGTATTTGCAT+GGG | 0.606115 | 4_4:+47044159 | None:intergenic |
| AGAATTAGTAATATGATCTG+AGG | 0.616840 | 4_4:+47047586 | None:intergenic |
| TGACAGCGGTTCTCAACACC+TGG | 0.616965 | 4_4:+47043481 | None:intergenic |
| CAGTAGAAGAGCTGGAAATG+TGG | 0.618720 | 4_4:-47044553 | Msa0683980:CDS |
| GAGTGCAACCTCATGAAACT+GGG | 0.622128 | 4_4:-47043617 | Msa0683980:CDS |
| CCAAGCCTTACAATGAGACA+GGG | 0.623318 | 4_4:+47044488 | None:intergenic |
| GTTGGATGTAGACGTAGTGA+TGG | 0.623773 | 4_4:+47043540 | None:intergenic |
| AGTATCACAGGTAGAATATG+GGG | 0.625550 | 4_4:-47044259 | Msa0683980:CDS |
| GGTGCTGGAGTATACGAACC+TGG | 0.628612 | 4_4:-47043423 | Msa0683980:CDS |
| GCAGACCTTGCCAGACACAA+GGG | 0.633261 | 4_4:+47048337 | None:intergenic |
| CTAATTGCCTGAGCAAATCG+AGG | 0.635399 | 4_4:+47044431 | None:intergenic |
| ACCATGCGTCAATGAAACAA+GGG | 0.635590 | 4_4:+47048452 | None:intergenic |
| CAGCAGCAGAATTGTTAGGG+AGG | 0.639469 | 4_4:-47043589 | Msa0683980:CDS |
| GATGCACTGGAATGTAGTGA+TGG | 0.651523 | 4_4:-47047611 | Msa0683980:CDS |
| ACAAAGACAAATCCTACTAG+AGG | 0.653155 | 4_4:+47043342 | None:intergenic |
| TCAAGAAGACAATACGCTGG+CGG | 0.653895 | 4_4:-47044595 | Msa0683980:CDS |
| TCAAAGCAACAACTATGACC+AGG | 0.665242 | 4_4:-47043499 | Msa0683980:CDS |
| TTATCTAGTAGTATCTACAT+GGG | 0.676689 | 4_4:-47043153 | Msa0683980:three_prime_UTR |
| ATTGTTCTAAAATGGGCAAG+CGG | 0.677673 | 4_4:-47043644 | Msa0683980:CDS |
| TACGATAATACTTATGACAG+CGG | 0.678800 | 4_4:+47043467 | None:intergenic |
| CCATGCGTCAATGAAACAAG+GGG | 0.685581 | 4_4:+47048453 | None:intergenic |
| CAATCAAGAAGACAATACGC+TGG | 0.698783 | 4_4:-47044598 | Msa0683980:CDS |
| ACTTTGGAAGCAGTGCTGTG+GGG | 0.718142 | 4_4:-47048428 | Msa0683980:CDS |
| GGATGATATCAGTGACAACG+AGG | 0.724876 | 4_4:-47043568 | Msa0683980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAGTAATTTTTTAATTCA+TGG | - | chr4_4:47043279-47043298 | Msa0683980:three_prime_UTR | 10.0% |
| !!! | TTTTTTTTTTTTATCAAGAT+TGG | + | chr4_4:47046510-47046529 | None:intergenic | 10.0% |
| !!! | TATTTACCTTTTTTTTTTTT+TGG | - | chr4_4:47047573-47047592 | Msa0683980:CDS | 10.0% |
| !!! | ATCATTGAATATTTTTTTTT+GGG | - | chr4_4:47047848-47047867 | Msa0683980:intron | 10.0% |
| !! | AAGTTTGATGAATAATTATT+GGG | + | chr4_4:47043197-47043216 | None:intergenic | 15.0% |
| !! | TAAGTTTGATGAATAATTAT+TGG | + | chr4_4:47043198-47043217 | None:intergenic | 15.0% |
| !! | AATAATTATTCATCAAACTT+AGG | - | chr4_4:47043197-47043216 | Msa0683980:three_prime_UTR | 15.0% |
| !!! | ATTTAACAAGTTTTAGAAAT+TGG | - | chr4_4:47044604-47044623 | Msa0683980:CDS | 15.0% |
| !! | AAAATTATCATCTTTATGTT+TGG | - | chr4_4:47045535-47045554 | Msa0683980:intron | 15.0% |
| !!! | AAGTTTTAGAATATGAAAAA+TGG | - | chr4_4:47047200-47047219 | Msa0683980:intron | 15.0% |
| !!! | AATCATTTTTTAGTTTTTGT+TGG | - | chr4_4:47047378-47047397 | Msa0683980:intron | 15.0% |
| !! | AAAAAAAAGGTAAATATTGT+TGG | + | chr4_4:47047569-47047588 | None:intergenic | 15.0% |
| !! | AACATTAAATAAAATCACTT+AGG | - | chr4_4:47047750-47047769 | Msa0683980:intron | 15.0% |
| !!! | GATCATTGAATATTTTTTTT+TGG | - | chr4_4:47047847-47047866 | Msa0683980:intron | 15.0% |
| !! | AACATCTAATATAGTTATTT+AGG | + | chr4_4:47049530-47049549 | None:intergenic | 15.0% |
| !!! | ACTAAACAAGATTTTAAACT+GGG | + | chr4_4:47043641-47043660 | None:intergenic | 20.0% |
| !! | TGATAAACGCTTATATTATA+AGG | - | chr4_4:47043940-47043959 | Msa0683980:intron | 20.0% |
| !!! | ATTTAAATGGATTCAAAAGT+GGG | - | chr4_4:47044415-47044434 | Msa0683980:intron | 20.0% |
| !! | ATTCAGTTACATAGTAAAAA+TGG | + | chr4_4:47044561-47044580 | None:intergenic | 20.0% |
| !!! | TCAAGTTATTATTAACCTTT+TGG | - | chr4_4:47045311-47045330 | Msa0683980:intron | 20.0% |
| !! | ATAGCAAATATGTTAAATGT+GGG | + | chr4_4:47045428-47045447 | None:intergenic | 20.0% |
| !! | AATAGCAAATATGTTAAATG+TGG | + | chr4_4:47045429-47045448 | None:intergenic | 20.0% |
| !!! | AACATATTTTCAGTTCTAAT+AGG | - | chr4_4:47045480-47045499 | Msa0683980:CDS | 20.0% |
| !!! | TTTAATTGTGTTTTCAGTTT+CGG | + | chr4_4:47045896-47045915 | None:intergenic | 20.0% |
| !! | ATTAAAAAGTAAGTGTAGTT+AGG | - | chr4_4:47045910-47045929 | Msa0683980:intron | 20.0% |
| !! | TTATTTACATATGACATTTG+TGG | - | chr4_4:47046358-47046377 | Msa0683980:intron | 20.0% |
| !! | TATGTCAATATATATTCCTT+GGG | - | chr4_4:47046434-47046453 | Msa0683980:intron | 20.0% |
| !!! | TAATTTGAAACAATTGTTAC+CGG | - | chr4_4:47046552-47046571 | Msa0683980:intron | 20.0% |
| !! | GGCATATATCTAATTTATAT+GGG | + | chr4_4:47046727-47046746 | None:intergenic | 20.0% |
| !! | AGGCATATATCTAATTTATA+TGG | + | chr4_4:47046728-47046747 | None:intergenic | 20.0% |
| !!! | TTTAGATTTAGTGTTGAATT+AGG | - | chr4_4:47046789-47046808 | Msa0683980:intron | 20.0% |
| !! | ACTAGAACATAAACAAATAT+GGG | + | chr4_4:47046871-47046890 | None:intergenic | 20.0% |
| !! | AACTAGAACATAAACAAATA+TGG | + | chr4_4:47046872-47046891 | None:intergenic | 20.0% |
| !!! | TTTTCATATTCTAAAACTTC+AGG | + | chr4_4:47047199-47047218 | None:intergenic | 20.0% |
| !!! | TATCATGTTATAGAATTTTC+CGG | + | chr4_4:47047309-47047328 | None:intergenic | 20.0% |
| !! | TCTATTTCAAACTAATCTAT+TGG | - | chr4_4:47047339-47047358 | Msa0683980:intron | 20.0% |
| !!! | ACCTTTGATTTGTTAATTAA+TGG | - | chr4_4:47047631-47047650 | Msa0683980:CDS | 20.0% |
| !! | ACCATTAATTAACAAATCAA+AGG | + | chr4_4:47047635-47047654 | None:intergenic | 20.0% |
| !! | ATATTTACTTGCATATTTCT+TGG | - | chr4_4:47047968-47047987 | Msa0683980:intron | 20.0% |
| !!! | CTATTTTCTTTGTTGTTTTA+GGG | + | chr4_4:47048692-47048711 | None:intergenic | 20.0% |
| !!! | AATGCAATTTTAATTATCCT+AGG | - | chr4_4:47048812-47048831 | Msa0683980:intron | 20.0% |
| !!! | ATGCAATTTTAATTATCCTA+GGG | - | chr4_4:47048813-47048832 | Msa0683980:intron | 20.0% |
| !!! | TTTAAAGAAAGCACAAATTT+TGG | + | chr4_4:47048890-47048909 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCATTTGAATCAT+AGG | - | chr4_4:47048917-47048936 | Msa0683980:intron | 20.0% |
| !! | AAGAAAAAGTTAAAGATAGA+AGG | - | chr4_4:47048957-47048976 | Msa0683980:intron | 20.0% |
| !!! | TCATAAGTATTATCGTATTT+TGG | - | chr4_4:47049240-47049259 | Msa0683980:intron | 20.0% |
| !!! | CATAAGTATTATCGTATTTT+GGG | - | chr4_4:47049241-47049260 | Msa0683980:intron | 20.0% |
| !! | CTACAAATTTATTTCAACTA+GGG | + | chr4_4:47049333-47049352 | None:intergenic | 20.0% |
| !! | TCTACAAATTTATTTCAACT+AGG | + | chr4_4:47049334-47049353 | None:intergenic | 20.0% |
| !!! | AGATAAAATATCTCTAGTTT+TGG | - | chr4_4:47049414-47049433 | Msa0683980:intron | 20.0% |
| ! | TTTAGTTGAAGTTGTTTAGA+CGG | + | chr4_4:47043104-47043123 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTACAATTCACTA+TGG | - | chr4_4:47043305-47043324 | Msa0683980:three_prime_UTR | 25.0% |
| !! | CACTAAACAAGATTTTAAAC+TGG | + | chr4_4:47043642-47043661 | None:intergenic | 25.0% |
| !! | CAGTTTAAAATCTTGTTTAG+TGG | - | chr4_4:47043640-47043659 | Msa0683980:CDS | 25.0% |
| !! | TAAAATCTTGTTTAGTGGTT+AGG | - | chr4_4:47043645-47043664 | Msa0683980:CDS | 25.0% |
| ! | TTGTAGTTTAAAAAGACGTT+TGG | - | chr4_4:47043679-47043698 | Msa0683980:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr4_4:47043969-47043988 | Msa0683980:intron | 25.0% |
| ! | TTTGAATCCATTTAAATGGT+GGG | + | chr4_4:47044412-47044431 | None:intergenic | 25.0% |
| !! | TTTTGAATCCATTTAAATGG+TGG | + | chr4_4:47044413-47044432 | None:intergenic | 25.0% |
| !! | CACTTTTGAATCCATTTAAA+TGG | + | chr4_4:47044416-47044435 | None:intergenic | 25.0% |
| !! | CATTTAAATGGATTCAAAAG+TGG | - | chr4_4:47044414-47044433 | Msa0683980:intron | 25.0% |
| ! | ACTATGTAACTGAATTATCT+TGG | - | chr4_4:47044566-47044585 | Msa0683980:CDS | 25.0% |
| ! | TTAACCTTTACAGAAAAAAG+GGG | + | chr4_4:47044890-47044909 | None:intergenic | 25.0% |
| ! | CTTAACCTTTACAGAAAAAA+GGG | + | chr4_4:47044891-47044910 | None:intergenic | 25.0% |
| ! | AGAATTAGTAATATGATCTG+AGG | + | chr4_4:47045118-47045137 | None:intergenic | 25.0% |
| ! | AATACTAGGTATATGATTTG+AGG | - | chr4_4:47045186-47045205 | Msa0683980:intron | 25.0% |
| ! | ATACTAGGTATATGATTTGA+GGG | - | chr4_4:47045187-47045206 | Msa0683980:intron | 25.0% |
| ! | AGCTAACTTTACCAATTAAA+TGG | + | chr4_4:47045365-47045384 | None:intergenic | 25.0% |
| ! | TTTAGTGATCTTAGAGTTAA+TGG | - | chr4_4:47045512-47045531 | Msa0683980:CDS | 25.0% |
| ! | ACAAAGAAAATTCAGAAACA+GGG | + | chr4_4:47045595-47045614 | None:intergenic | 25.0% |
| ! | TACAAAGAAAATTCAGAAAC+AGG | + | chr4_4:47045596-47045615 | None:intergenic | 25.0% |
| ! | ATTTCTCAAATGTTCTTTCA+TGG | + | chr4_4:47045641-47045660 | None:intergenic | 25.0% |
| ! | ATTCAAGAGAAATAATAGCT+AGG | - | chr4_4:47045731-47045750 | Msa0683980:intron | 25.0% |
| !! | TTAGATTTTGCACAATTTCA+GGG | + | chr4_4:47046043-47046062 | None:intergenic | 25.0% |
| ! | TTAATTGATGTTCGAATTGT+AGG | + | chr4_4:47046226-47046245 | None:intergenic | 25.0% |
| ! | ACTGAAAAAAACATCTATTG+TGG | - | chr4_4:47046326-47046345 | Msa0683980:intron | 25.0% |
| ! | GTATGTCAATATATATTCCT+TGG | - | chr4_4:47046433-47046452 | Msa0683980:intron | 25.0% |
| ! | AACACTAAATCTAAATCAAG+AGG | + | chr4_4:47046784-47046803 | None:intergenic | 25.0% |
| ! | TTTGATACCATCTTAGAATT+TGG | + | chr4_4:47046821-47046840 | None:intergenic | 25.0% |
| ! | TGAAAATCACTTTATTCAAG+AGG | + | chr4_4:47047110-47047129 | None:intergenic | 25.0% |
| ! | AGACGACCAAAAAAAAAAAA+AGG | + | chr4_4:47047582-47047601 | None:intergenic | 25.0% |
| ! | TATGCTATTGCTATCTAATA+AGG | + | chr4_4:47047951-47047970 | None:intergenic | 25.0% |
| ! | ATTGGTTACTCATTAAACTA+AGG | + | chr4_4:47048410-47048429 | None:intergenic | 25.0% |
| !!! | TTTTAGGGTGAATAAATGAA+GGG | + | chr4_4:47048677-47048696 | None:intergenic | 25.0% |
| !!! | GCTATTTTCTTTGTTGTTTT+AGG | + | chr4_4:47048693-47048712 | None:intergenic | 25.0% |
| ! | AACAAAGAAAATAGCAAAGA+GGG | - | chr4_4:47048698-47048717 | Msa0683980:intron | 25.0% |
| !!! | TGCAATTTTAATTATCCTAG+GGG | - | chr4_4:47048814-47048833 | Msa0683980:intron | 25.0% |
| !!! | TTTAACTTTTTCTTAGTAGC+TGG | + | chr4_4:47048951-47048970 | None:intergenic | 25.0% |
| !!! | ATGTGTGAATTGTTCTAAAA+TGG | - | chr4_4:47049049-47049068 | Msa0683980:intron | 25.0% |
| !!! | TGTGTGAATTGTTCTAAAAT+GGG | - | chr4_4:47049050-47049069 | Msa0683980:intron | 25.0% |
| !! | AATAAAAGGTGTGTGTTTAT+GGG | - | chr4_4:47049455-47049474 | Msa0683980:intron | 25.0% |
| ! | TTATCTAGTAGTATCTACAT+GGG | - | chr4_4:47049548-47049567 | Msa0683980:intron | 25.0% |
| ! | CGAAGAATGAATCATTTTGT+TGG | - | chr4_4:47043073-47043092 | Msa0683980:three_prime_UTR | 30.0% |
| ! | TGAAAAGTTAACCTGATTTG+AGG | + | chr4_4:47043158-47043177 | None:intergenic | 30.0% |
| ! | AAAAGACGTTTGGTTTCATT+AGG | - | chr4_4:47043689-47043708 | Msa0683980:CDS | 30.0% |
| ! | AAAGACGTTTGGTTTCATTA+GGG | - | chr4_4:47043690-47043709 | Msa0683980:CDS | 30.0% |
| ! | GCTTATTTGAGTTCACTTAT+TGG | - | chr4_4:47043727-47043746 | Msa0683980:CDS | 30.0% |
| AAGTTCTCAAAGATAGCTTA+TGG | - | chr4_4:47043833-47043852 | Msa0683980:intron | 30.0% | |
| AAAACTATCTATGCCATGTT+TGG | + | chr4_4:47043985-47044004 | None:intergenic | 30.0% | |
| AAAAACGTACAAAAAACAGC+TGG | - | chr4_4:47044184-47044203 | Msa0683980:CDS | 30.0% | |
| AGATTTATGTTCCCTTTCTA+TGG | - | chr4_4:47044773-47044792 | Msa0683980:intron | 30.0% | |
| CCTTAACCTTTACAGAAAAA+AGG | + | chr4_4:47044892-47044911 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTCTGTAAAGGTTA+AGG | - | chr4_4:47044889-47044908 | Msa0683980:intron | 30.0% |
| TCACGTATATAGCAGAATTT+GGG | + | chr4_4:47044991-47045010 | None:intergenic | 30.0% | |
| TTCACGTATATAGCAGAATT+TGG | + | chr4_4:47044992-47045011 | None:intergenic | 30.0% | |
| GCAATGGAAAGAACTAATAA+TGG | + | chr4_4:47045057-47045076 | None:intergenic | 30.0% | |
| TGCAGGATAATTTGAATACT+AGG | - | chr4_4:47045172-47045191 | Msa0683980:intron | 30.0% | |
| CTACTAATCACATCATAACA+AGG | + | chr4_4:47045231-47045250 | None:intergenic | 30.0% | |
| CAATTAAATGGTCCTCAATT+AGG | + | chr4_4:47045353-47045372 | None:intergenic | 30.0% | |
| CTAATTGAGGACCATTTAAT+TGG | - | chr4_4:47045351-47045370 | Msa0683980:intron | 30.0% | |
| TTATCATCTTTATGTTTGGC+AGG | - | chr4_4:47045539-47045558 | Msa0683980:intron | 30.0% | |
| ACAGGGATAATTAGAAACAT+AGG | + | chr4_4:47045578-47045597 | None:intergenic | 30.0% | |
| TTAACTCTCAAGTATATAGC+TGG | + | chr4_4:47045791-47045810 | None:intergenic | 30.0% | |
| GTCTGAACTATGACAAAATT+TGG | - | chr4_4:47045824-47045843 | Msa0683980:intron | 30.0% | |
| AGACTTCTCTATTACAACAT+TGG | - | chr4_4:47045933-47045952 | Msa0683980:intron | 30.0% | |
| ! | CTTAGATTTTGCACAATTTC+AGG | + | chr4_4:47046044-47046063 | None:intergenic | 30.0% |
| !! | TTTGATTTTCCAACAAGACT+CGG | + | chr4_4:47046175-47046194 | None:intergenic | 30.0% |
| AGTAACCAGAATTTCGAAAA+TGG | + | chr4_4:47046287-47046306 | None:intergenic | 30.0% | |
| ! | ATTTGTGGTCTGTTCTTTTT+GGG | - | chr4_4:47046373-47046392 | Msa0683980:intron | 30.0% |
| ! | TCAACATTCTACAGTACTTT+TGG | + | chr4_4:47046597-47046616 | None:intergenic | 30.0% |
| !! | AGTTTTGTAAAGACTATCTC+AGG | + | chr4_4:47046748-47046767 | None:intergenic | 30.0% |
| GAGATAGTCTTTACAAAACT+TGG | - | chr4_4:47046748-47046767 | Msa0683980:intron | 30.0% | |
| TAAATCTAAATCAAGAGGTG+AGG | + | chr4_4:47046779-47046798 | None:intergenic | 30.0% | |
| GCTATATTACTAGTTGAAGT+CGG | + | chr4_4:47046984-47047003 | None:intergenic | 30.0% | |
| TATAGCTAAAGCTGTCTATA+AGG | - | chr4_4:47046998-47047017 | Msa0683980:intron | 30.0% | |
| TAAAGCTGTCTATAAGGATT+GGG | - | chr4_4:47047004-47047023 | Msa0683980:intron | 30.0% | |
| AAGTTCTTTGAATTTGTGCT+AGG | + | chr4_4:47047070-47047089 | None:intergenic | 30.0% | |
| !!! | TGTGCATAATTTTGCTATTC+CGG | - | chr4_4:47047287-47047306 | Msa0683980:intron | 30.0% |
| ! | TTTCTCTTTGTTTCCAAACA+AGG | + | chr4_4:47047426-47047445 | None:intergenic | 30.0% |
| CTAAAGTGAATTACTCACTT+TGG | - | chr4_4:47047676-47047695 | Msa0683980:intron | 30.0% | |
| ACATATTCAATTGTGAGATC+CGG | + | chr4_4:47047707-47047726 | None:intergenic | 30.0% | |
| TAAATATTCAGTAGACAGAG+GGG | + | chr4_4:47048354-47048373 | None:intergenic | 30.0% | |
| GTAAATATTCAGTAGACAGA+GGG | + | chr4_4:47048355-47048374 | None:intergenic | 30.0% | |
| TGTAAATATTCAGTAGACAG+AGG | + | chr4_4:47048356-47048375 | None:intergenic | 30.0% | |
| AAACCCTCAAATTACAGTAT+TGG | - | chr4_4:47048487-47048506 | Msa0683980:CDS | 30.0% | |
| !!! | GTTTTAGGGTGAATAAATGA+AGG | + | chr4_4:47048678-47048697 | None:intergenic | 30.0% |
| CAACAAAGAAAATAGCAAAG+AGG | - | chr4_4:47048697-47048716 | Msa0683980:intron | 30.0% | |
| TCTCAGTCAATAAAAAAACG+AGG | - | chr4_4:47048728-47048747 | Msa0683980:intron | 30.0% | |
| CTCAGTCAATAAAAAAACGA+GGG | - | chr4_4:47048729-47048748 | Msa0683980:intron | 30.0% | |
| TACGATAATACTTATGACAG+CGG | + | chr4_4:47049237-47049256 | None:intergenic | 30.0% | |
| ACTAGGGAAGTAAACTAATT+TGG | + | chr4_4:47049317-47049336 | None:intergenic | 30.0% | |
| AGGATTTGTCTTTGTGAATT+AGG | - | chr4_4:47049367-47049386 | Msa0683980:intron | 30.0% | |
| ATTTGTCTTTGTGAATTAGG+AGG | - | chr4_4:47049370-47049389 | Msa0683980:intron | 30.0% | |
| ! | CAATAAAAGGTGTGTGTTTA+TGG | - | chr4_4:47049454-47049473 | Msa0683980:intron | 30.0% |
| GTTATCTAGTAGTATCTACA+TGG | - | chr4_4:47049547-47049566 | Msa0683980:intron | 30.0% | |
| TTCATCTTTCTCCTCAAATC+AGG | - | chr4_4:47043144-47043163 | Msa0683980:three_prime_UTR | 35.0% | |
| TTGATATGATACGTCGAAAG+CGG | - | chr4_4:47043453-47043472 | Msa0683980:CDS | 35.0% | |
| ATTCCAAAAGCCTTGACATT+GGG | + | chr4_4:47043531-47043550 | None:intergenic | 35.0% | |
| GCATTCAAAGCACAAAGATT+GGG | + | chr4_4:47043569-47043588 | None:intergenic | 35.0% | |
| ! | CAATCTTTGTGCTTTGAATG+CGG | - | chr4_4:47043568-47043587 | Msa0683980:CDS | 35.0% |
| TTGTTTAGTGGTTAGGATAG+TGG | - | chr4_4:47043652-47043671 | Msa0683980:CDS | 35.0% | |
| ! | AAGACGTTTGGTTTCATTAG+GGG | - | chr4_4:47043691-47043710 | Msa0683980:CDS | 35.0% |
| ACTTATTGGCATAAGCACTT+AGG | - | chr4_4:47043741-47043760 | Msa0683980:CDS | 35.0% | |
| CTTATTGGCATAAGCACTTA+GGG | - | chr4_4:47043742-47043761 | Msa0683980:CDS | 35.0% | |
| TTATTGGCATAAGCACTTAG+GGG | - | chr4_4:47043743-47043762 | Msa0683980:CDS | 35.0% | |
| !! | GGTCTGGTTGTTTTCTTATT+TGG | - | chr4_4:47043764-47043783 | Msa0683980:CDS | 35.0% |
| TGAATTGCCTTCGGTTTATA+TGG | - | chr4_4:47044091-47044110 | Msa0683980:CDS | 35.0% | |
| GAATTGCCTTCGGTTTATAT+GGG | - | chr4_4:47044092-47044111 | Msa0683980:CDS | 35.0% | |
| AAACAAAACAGTGCTATCAC+TGG | - | chr4_4:47044158-47044177 | Msa0683980:CDS | 35.0% | |
| AACAAAACAGTGCTATCACT+GGG | - | chr4_4:47044159-47044178 | Msa0683980:CDS | 35.0% | |
| TATCTTTGTGCAAAGCCTTT+GGG | + | chr4_4:47044221-47044240 | None:intergenic | 35.0% | |
| ATATCTTTGTGCAAAGCCTT+TGG | + | chr4_4:47044222-47044241 | None:intergenic | 35.0% | |
| !! | AATCCATTTAAATGGTGGGT+AGG | + | chr4_4:47044408-47044427 | None:intergenic | 35.0% |
| ATCTACCAAGTCCATAGAAA+GGG | + | chr4_4:47044787-47044806 | None:intergenic | 35.0% | |
| AATCTACCAAGTCCATAGAA+AGG | + | chr4_4:47044788-47044807 | None:intergenic | 35.0% | |
| TTTCTGTAAAGGTTAAGGAG+CGG | - | chr4_4:47044894-47044913 | Msa0683980:intron | 35.0% | |
| TGCTATATACGTGAAGCATA+TGG | - | chr4_4:47044997-47045016 | Msa0683980:intron | 35.0% | |
| TTAATACTCTCTCTTCTACC+AGG | - | chr4_4:47045020-47045039 | Msa0683980:intron | 35.0% | |
| ! | ATAATGGTCTTGATAGTACC+TGG | + | chr4_4:47045041-47045060 | None:intergenic | 35.0% |
| TTCAGAAATATCTGCTGAAC+CGG | - | chr4_4:47045143-47045162 | Msa0683980:intron | 35.0% | |
| GTATTCAAATTATCCTGCAC+AGG | + | chr4_4:47045171-47045190 | None:intergenic | 35.0% | |
| !!! | TTATTAACCTTTTGGCTCAG+AGG | - | chr4_4:47045319-47045338 | Msa0683980:intron | 35.0% |
| !!! | TATTAACCTTTTGGCTCAGA+GGG | - | chr4_4:47045320-47045339 | Msa0683980:intron | 35.0% |
| CATAGTTCAGACTTCAGTTT+AGG | + | chr4_4:47045816-47045835 | None:intergenic | 35.0% | |
| ! | ATTTTGCACAATTTCAGGGA+TGG | + | chr4_4:47046039-47046058 | None:intergenic | 35.0% |
| !! | TTAGTGCCTTATTTCCAACT+TGG | - | chr4_4:47046123-47046142 | Msa0683980:intron | 35.0% |
| GGAGATACTATGAGAGATTT+AGG | + | chr4_4:47046201-47046220 | None:intergenic | 35.0% | |
| TTGATGTTCGAATTGTAGGT+AGG | + | chr4_4:47046222-47046241 | None:intergenic | 35.0% | |
| AATGAAAAGACTGTGTAGTC+TGG | - | chr4_4:47046247-47046266 | Msa0683980:intron | 35.0% | |
| ! | TGTGTAGTCTGGTTTATTCA+TGG | - | chr4_4:47046258-47046277 | Msa0683980:intron | 35.0% |
| ! | CATTTGTGGTCTGTTCTTTT+TGG | - | chr4_4:47046372-47046391 | Msa0683980:intron | 35.0% |
| ATCATTCATGTTGAAACCCA+AGG | + | chr4_4:47046453-47046472 | None:intergenic | 35.0% | |
| ! | TTTGAAACAATTGTTACCGG+AGG | - | chr4_4:47046555-47046574 | Msa0683980:intron | 35.0% |
| TTGAAACAATTGTTACCGGA+GGG | - | chr4_4:47046556-47046575 | Msa0683980:intron | 35.0% | |
| TTATTGAGCCGATAATGTAC+AGG | - | chr4_4:47046620-47046639 | Msa0683980:intron | 35.0% | |
| TATTGAGCCGATAATGTACA+GGG | - | chr4_4:47046621-47046640 | Msa0683980:intron | 35.0% | |
| ! | GTTGAGTCCAAATTCTAAGA+TGG | - | chr4_4:47046811-47046830 | Msa0683980:intron | 35.0% |
| TCTATCCAAGACCTGTTATT+GGG | - | chr4_4:47046842-47046861 | Msa0683980:intron | 35.0% | |
| CTAAAGCTGTCTATAAGGAT+TGG | - | chr4_4:47047003-47047022 | Msa0683980:intron | 35.0% | |
| AAACCCAAAAACCAGATCAA+GGG | + | chr4_4:47047039-47047058 | None:intergenic | 35.0% | |
| !! | TAGTTTGCCAGAAAGGTATT+TGG | - | chr4_4:47047261-47047280 | Msa0683980:intron | 35.0% |
| CACAAAACCAAATACCTTTC+TGG | + | chr4_4:47047271-47047290 | None:intergenic | 35.0% | |
| AAGTGAATTACTCACTTTGG+AGG | - | chr4_4:47047679-47047698 | Msa0683980:intron | 35.0% | |
| TTGAGCGAGTTTCAAAATCT+TGG | - | chr4_4:47047916-47047935 | Msa0683980:intron | 35.0% | |
| AGTTTCAAAATCTTGGTCAG+AGG | - | chr4_4:47047923-47047942 | Msa0683980:intron | 35.0% | |
| TAGAAGCTGTGTAAAATCTG+TGG | + | chr4_4:47048056-47048075 | None:intergenic | 35.0% | |
| TTGTCTTCTTGATTGAGGTA+AGG | + | chr4_4:47048098-47048117 | None:intergenic | 35.0% | |
| AATTCTTTCAGTAGAAGAGC+TGG | - | chr4_4:47048140-47048159 | Msa0683980:intron | 35.0% | |
| AGCAAATCGAGGTTTATCTT+GGG | + | chr4_4:47048262-47048281 | None:intergenic | 35.0% | |
| AAAGCAAACATGAGAACTAG+TGG | + | chr4_4:47048315-47048334 | None:intergenic | 35.0% | |
| AAATATTCAGTAGACAGAGG+GGG | + | chr4_4:47048353-47048372 | None:intergenic | 35.0% | |
| GATACTGAAGCAAAGATCAT+TGG | + | chr4_4:47048428-47048447 | None:intergenic | 35.0% | |
| TCAGTATCACAGGTAGAATA+TGG | - | chr4_4:47048440-47048459 | Msa0683980:CDS | 35.0% | |
| CAGTATCACAGGTAGAATAT+GGG | - | chr4_4:47048441-47048460 | Msa0683980:CDS | 35.0% | |
| AGTATCACAGGTAGAATATG+GGG | - | chr4_4:47048442-47048461 | Msa0683980:CDS | 35.0% | |
| CCACCAATACTGTAATTTGA+GGG | + | chr4_4:47048493-47048512 | None:intergenic | 35.0% | |
| TCCACCAATACTGTAATTTG+AGG | + | chr4_4:47048494-47048513 | None:intergenic | 35.0% | |
| ATTTGCATGGGAATTCTCAA+TGG | + | chr4_4:47048533-47048552 | None:intergenic | 35.0% | |
| AACAAACAACCAAGACGATT+AGG | + | chr4_4:47048593-47048612 | None:intergenic | 35.0% | |
| GATTACCTGAAGAAAAGTCT+GGG | + | chr4_4:47048651-47048670 | None:intergenic | 35.0% | |
| AGATTACCTGAAGAAAAGTC+TGG | + | chr4_4:47048652-47048671 | None:intergenic | 35.0% | |
| GTTGTTGATCATGAAGTACA+CGG | - | chr4_4:47048766-47048785 | Msa0683980:intron | 35.0% | |
| !! | ATTGTTCTAAAATGGGCAAG+CGG | - | chr4_4:47049057-47049076 | Msa0683980:intron | 35.0% |
| ACAAAGACAAATCCTACTAG+AGG | + | chr4_4:47049362-47049381 | None:intergenic | 35.0% | |
| ! | CATGATTCTGTAAAAAGCAC+AGG | + | chr4_4:47049577-47049596 | None:intergenic | 35.0% |
| !! | CTGTGCTTTTTACAGAATCA+TGG | - | chr4_4:47049575-47049594 | Msa0683980:five_prime_UTR | 35.0% |
| GAACATGCGTCAATTATAGA+TGG | + | chr4_4:47049656-47049675 | None:intergenic | 35.0% | |
| GATTCCAAAAGCCTTGACAT+TGG | + | chr4_4:47043532-47043551 | None:intergenic | 40.0% | |
| CGCATTCAAAGCACAAAGAT+TGG | + | chr4_4:47043570-47043589 | None:intergenic | 40.0% | |
| ! | CTGGGCGATCTTTGATAATA+CGG | + | chr4_4:47043623-47043642 | None:intergenic | 40.0% |
| GGTTTCATTAGGGGTTTACT+TGG | - | chr4_4:47043700-47043719 | Msa0683980:CDS | 40.0% | |
| CATTAGGGGTTTACTTGGAT+TGG | - | chr4_4:47043705-47043724 | Msa0683980:CDS | 40.0% | |
| CAGAGAAACTGAATTGCCTT+CGG | - | chr4_4:47044082-47044101 | Msa0683980:CDS | 40.0% | |
| TTCGGTTTATATGGGAGAGA+GGG | - | chr4_4:47044100-47044119 | Msa0683980:CDS | 40.0% | |
| ACCATGCGTCAATGAAACAA+GGG | + | chr4_4:47044252-47044271 | None:intergenic | 40.0% | |
| !! | TTGCTGCTTTAGAAGCTGTA+AGG | - | chr4_4:47044321-47044340 | Msa0683980:intron | 40.0% |
| !! | ATTTAAATGGTGGGTAGGCA+AGG | + | chr4_4:47044403-47044422 | None:intergenic | 40.0% |
| TTGCCTACCCACCATTTAAA+TGG | - | chr4_4:47044402-47044421 | Msa0683980:intron | 40.0% | |
| CATCGATGTTTGTGTACTTC+TGG | - | chr4_4:47044634-47044653 | Msa0683980:CDS | 40.0% | |
| ! | TTGTTCCACGACGTTTTATG+TGG | - | chr4_4:47044664-47044683 | Msa0683980:CDS | 40.0% |
| ! | TGTTCCACGACGTTTTATGT+GGG | - | chr4_4:47044665-47044684 | Msa0683980:CDS | 40.0% |
| ATGTTCCCTTTCTATGGACT+TGG | - | chr4_4:47044779-47044798 | Msa0683980:intron | 40.0% | |
| !!! | GTAGCCCCTTTTTTCTGTAA+AGG | - | chr4_4:47044883-47044902 | Msa0683980:intron | 40.0% |
| ATCAGTAAAGGCTGTTGCAA+TGG | + | chr4_4:47045073-47045092 | None:intergenic | 40.0% | |
| ACATTCCAGTGCATCAGTAA+AGG | + | chr4_4:47045085-47045104 | None:intergenic | 40.0% | |
| AAATAACCCTCTGAGCCAAA+AGG | + | chr4_4:47045329-47045348 | None:intergenic | 40.0% | |
| GAGGGTTATTTGCCTAATTG+AGG | - | chr4_4:47045338-47045357 | Msa0683980:intron | 40.0% | |
| GTTAAATGTGGGATCATCCA+GGG | + | chr4_4:47045417-47045436 | None:intergenic | 40.0% | |
| TGTTAAATGTGGGATCATCC+AGG | + | chr4_4:47045418-47045437 | None:intergenic | 40.0% | |
| ATGTTTGGCAGGTTTCTTTC+TGG | - | chr4_4:47045550-47045569 | Msa0683980:intron | 40.0% | |
| GTTAGTAGTCGTTAGTAGTC+TGG | - | chr4_4:47045993-47046012 | Msa0683980:intron | 40.0% | |
| ! | TTGTAGAAACTGGTTCAGTG+TGG | + | chr4_4:47046083-47046102 | None:intergenic | 40.0% |
| CAAGAAGACGTTGTAGAAAC+TGG | + | chr4_4:47046093-47046112 | None:intergenic | 40.0% | |
| ! | AGTGCACCAAGTTGGAAATA+AGG | + | chr4_4:47046132-47046151 | None:intergenic | 40.0% |
| ! | GGCTTCCATTTTCGAAATTC+TGG | - | chr4_4:47046279-47046298 | Msa0683980:intron | 40.0% |
| CAACCAACATGCTCAGAAAA+CGG | + | chr4_4:47046399-47046418 | None:intergenic | 40.0% | |
| !! | GAAAGGCTAAGGTTGATTTG+GGG | + | chr4_4:47046651-47046670 | None:intergenic | 40.0% |
| ! | CGAAAGGCTAAGGTTGATTT+GGG | + | chr4_4:47046652-47046671 | None:intergenic | 40.0% |
| ! | TCGAAAGGCTAAGGTTGATT+TGG | + | chr4_4:47046653-47046672 | None:intergenic | 40.0% |
| TAACAAGCACCAACATCGAA+AGG | + | chr4_4:47046668-47046687 | None:intergenic | 40.0% | |
| GTCTATCCAAGACCTGTTAT+TGG | - | chr4_4:47046841-47046860 | Msa0683980:intron | 40.0% | |
| AATATGGGTGACCCAATAAC+AGG | + | chr4_4:47046856-47046875 | None:intergenic | 40.0% | |
| ! | GTTCTAGTTGACTTAGTCCT+AGG | - | chr4_4:47046883-47046902 | Msa0683980:intron | 40.0% |
| !!! | TCATCCCTTGATCTGGTTTT+TGG | - | chr4_4:47047032-47047051 | Msa0683980:intron | 40.0% |
| !!! | CATCCCTTGATCTGGTTTTT+GGG | - | chr4_4:47047033-47047052 | Msa0683980:intron | 40.0% |
| CAAACCCAAAAACCAGATCA+AGG | + | chr4_4:47047040-47047059 | None:intergenic | 40.0% | |
| !!! | CTGGTTTTTGGGTTTGAGTT+AGG | - | chr4_4:47047044-47047063 | Msa0683980:intron | 40.0% |
| TAAAACTTCAGGAGCTCTCT+CGG | + | chr4_4:47047188-47047207 | None:intergenic | 40.0% | |
| AACGAAGAGCTGGAAAATCA+AGG | - | chr4_4:47047235-47047254 | Msa0683980:intron | 40.0% | |
| ACGAAGAGCTGGAAAATCAA+GGG | - | chr4_4:47047236-47047255 | Msa0683980:intron | 40.0% | |
| !! | AAGGGATTAGTTTGCCAGAA+AGG | - | chr4_4:47047254-47047273 | Msa0683980:intron | 40.0% |
| TTGTTTCCAAACAAGGAGAC+AGG | + | chr4_4:47047419-47047438 | None:intergenic | 40.0% | |
| ! | AGTTGCTTTGCACAATTGAG+CGG | - | chr4_4:47047478-47047497 | Msa0683980:intron | 40.0% |
| TTAGAGAGTAAAGCGAGCAA+AGG | + | chr4_4:47047660-47047679 | None:intergenic | 40.0% | |
| CACTTTATTCATCCCCAACT+CGG | - | chr4_4:47047796-47047815 | Msa0683980:intron | 40.0% | |
| ACTTTATTCATCCCCAACTC+GGG | - | chr4_4:47047797-47047816 | Msa0683980:intron | 40.0% | |
| AAGTACTTAATCCCCGAGTT+GGG | + | chr4_4:47047812-47047831 | None:intergenic | 40.0% | |
| TAAGTACTTAATCCCCGAGT+TGG | + | chr4_4:47047813-47047832 | None:intergenic | 40.0% | |
| GCACAAACACCACTAAATCA+TGG | + | chr4_4:47048013-47048032 | None:intergenic | 40.0% | |
| GCGTATTGTCTTCTTGATTG+AGG | + | chr4_4:47048103-47048122 | None:intergenic | 40.0% | |
| CAATCAAGAAGACAATACGC+TGG | - | chr4_4:47048103-47048122 | Msa0683980:intron | 40.0% | |
| GCTGGAAATGTGGTCAAATA+TGG | - | chr4_4:47048158-47048177 | Msa0683980:intron | 40.0% | |
| TGTGGTCAAATATGGTGTTC+TGG | - | chr4_4:47048166-47048185 | Msa0683980:intron | 40.0% | |
| TCAAATATGGTGTTCTGGCA+TGG | - | chr4_4:47048171-47048190 | Msa0683980:intron | 40.0% | |
| GAGCAAATCGAGGTTTATCT+TGG | + | chr4_4:47048263-47048282 | None:intergenic | 40.0% | |
| ! | AGATAAACCTCGATTTGCTC+AGG | - | chr4_4:47048263-47048282 | Msa0683980:CDS | 40.0% |
| GATCTTTGCTTCAGTATCAC+AGG | - | chr4_4:47048430-47048449 | Msa0683980:CDS | 40.0% | |
| ! | CCCTCAAATTACAGTATTGG+TGG | - | chr4_4:47048490-47048509 | Msa0683980:CDS | 40.0% |
| CAGGATCTCAGTATTTGCAT+GGG | + | chr4_4:47048545-47048564 | None:intergenic | 40.0% | |
| ACAGGATCTCAGTATTTGCA+TGG | + | chr4_4:47048546-47048565 | None:intergenic | 40.0% | |
| ATCTTGCAGAATGGAAGAAC+AGG | + | chr4_4:47048564-47048583 | None:intergenic | 40.0% | |
| AGGAAAGTGATCTTGCAGAA+TGG | + | chr4_4:47048573-47048592 | None:intergenic | 40.0% | |
| GATCACTTTCCTAATCGTCT+TGG | - | chr4_4:47048581-47048600 | Msa0683980:CDS | 40.0% | |
| ! | TATTGCCCAGACTTTTCTTC+AGG | - | chr4_4:47048643-47048662 | Msa0683980:intron | 40.0% |
| ATAAACGTGTTGCACAGACA+AGG | + | chr4_4:47048863-47048882 | None:intergenic | 40.0% | |
| TCAACACTGCCATCATATCT+TGG | - | chr4_4:47049014-47049033 | Msa0683980:intron | 40.0% | |
| ACTACGTCTACATCCAACTA+TGG | - | chr4_4:47049166-47049185 | Msa0683980:intron | 40.0% | |
| CGGTCATCTAATACCATAGT+TGG | + | chr4_4:47049182-47049201 | None:intergenic | 40.0% | |
| !! | GGTCATAGTTGTTGCTTTGA+CGG | + | chr4_4:47049202-47049221 | None:intergenic | 40.0% |
| TCAAAGCAACAACTATGACC+AGG | - | chr4_4:47049202-47049221 | Msa0683980:intron | 40.0% | |
| !!! | TTTTGGGTTGTCATAGCTCT+TGG | - | chr4_4:47049257-47049276 | Msa0683980:intron | 40.0% |
| TTGTAGAGAACACCTCTAGT+AGG | - | chr4_4:47049347-47049366 | Msa0683980:intron | 40.0% | |
| TGTCTTTGTGAATTAGGAGG+TGG | - | chr4_4:47049373-47049392 | Msa0683980:intron | 40.0% | |
| ATGCGTCAATTATAGATGGC+TGG | + | chr4_4:47049652-47049671 | None:intergenic | 40.0% | |
| CAACGTGTCAGTGTCATATC+TGG | + | chr4_4:47043417-47043436 | None:intergenic | 45.0% | |
| CGATTTGTGTCCCAATGTCA+AGG | - | chr4_4:47043518-47043537 | Msa0683980:CDS | 45.0% | |
| ! | TGTCCCAATGTCAAGGCTTT+TGG | - | chr4_4:47043525-47043544 | Msa0683980:CDS | 45.0% |
| CTCTCTCCCATATAAACCGA+AGG | + | chr4_4:47044101-47044120 | None:intergenic | 45.0% | |
| CTTCGGTTTATATGGGAGAG+AGG | - | chr4_4:47044099-47044118 | Msa0683980:CDS | 45.0% | |
| CCATGCGTCAATGAAACAAG+GGG | + | chr4_4:47044251-47044270 | None:intergenic | 45.0% | |
| CACCATGCGTCAATGAAACA+AGG | + | chr4_4:47044253-47044272 | None:intergenic | 45.0% | |
| TCATTGACGCATGGTGACTT+TGG | - | chr4_4:47044257-47044276 | Msa0683980:CDS | 45.0% | |
| !! | TTCAAAAGTGGGCTGTGTTC+AGG | - | chr4_4:47044426-47044445 | Msa0683980:intron | 45.0% |
| !! | TCAAAAGTGGGCTGTGTTCA+GGG | - | chr4_4:47044427-47044446 | Msa0683980:intron | 45.0% |
| ! | GGGTTTGGTTAAAAGCATGC+AGG | - | chr4_4:47044448-47044467 | Msa0683980:CDS | 45.0% |
| GTAACCCACATAAAACGTCG+TGG | + | chr4_4:47044672-47044691 | None:intergenic | 45.0% | |
| AAAGGTTAAGGAGCGGAGAA+CGG | - | chr4_4:47044901-47044920 | Msa0683980:intron | 45.0% | |
| AACAGCCTTTACTGATGCAC+TGG | - | chr4_4:47045077-47045096 | Msa0683980:intron | 45.0% | |
| GATGCACTGGAATGTAGTGA+TGG | - | chr4_4:47045090-47045109 | Msa0683980:intron | 45.0% | |
| AAATTATCCTGCACAGGAGC+CGG | + | chr4_4:47045165-47045184 | None:intergenic | 45.0% | |
| GATATGCAACAACCAAACCC+TGG | - | chr4_4:47045397-47045416 | Msa0683980:intron | 45.0% | |
| AGTAGTCGTTAGTAGTCTGG+TGG | - | chr4_4:47045996-47046015 | Msa0683980:intron | 45.0% | |
| ACAAATGCATAAGAGCCCTC+CGG | + | chr4_4:47046574-47046593 | None:intergenic | 45.0% | |
| ! | CAACCTTAGCCTTTCGATGT+TGG | - | chr4_4:47046656-47046675 | Msa0683980:intron | 45.0% |
| TTGACTTAGTCCTAGGCATG+AGG | - | chr4_4:47046890-47046909 | Msa0683980:intron | 45.0% | |
| TGACTTAGTCCTAGGCATGA+GGG | - | chr4_4:47046891-47046910 | Msa0683980:intron | 45.0% | |
| TCTCAAAACACACACAGGAC+TGG | + | chr4_4:47046960-47046979 | None:intergenic | 45.0% | |
| TCGGATCTCAAAACACACAC+AGG | + | chr4_4:47046965-47046984 | None:intergenic | 45.0% | |
| AAAACTTCAGGAGCTCTCTC+GGG | + | chr4_4:47047187-47047206 | None:intergenic | 45.0% | |
| TCTACTCCTGTCTCCTTGTT+TGG | - | chr4_4:47047410-47047429 | Msa0683980:intron | 45.0% | |
| ! | ATTACTCACTTTGGAGGAGC+CGG | - | chr4_4:47047685-47047704 | Msa0683980:intron | 45.0% |
| CTTTATTCATCCCCAACTCG+GGG | - | chr4_4:47047798-47047817 | Msa0683980:intron | 45.0% | |
| AGTACTTAATCCCCGAGTTG+GGG | + | chr4_4:47047811-47047830 | None:intergenic | 45.0% | |
| CTTGGTTTCTTCTGTTGCAG+TGG | - | chr4_4:47047986-47048005 | Msa0683980:intron | 45.0% | |
| TGCAGTGGACCATGATTTAG+TGG | - | chr4_4:47048001-47048020 | Msa0683980:intron | 45.0% | |
| TCAAGAAGACAATACGCTGG+CGG | - | chr4_4:47048106-47048125 | Msa0683980:intron | 45.0% | |
| CAGTAGAAGAGCTGGAAATG+TGG | - | chr4_4:47048148-47048167 | Msa0683980:intron | 45.0% | |
| ACAGACCCTGTCTCATTGTA+AGG | - | chr4_4:47048208-47048227 | Msa0683980:intron | 45.0% | |
| CCAAGCCTTACAATGAGACA+GGG | + | chr4_4:47048216-47048235 | None:intergenic | 45.0% | |
| CCTGTCTCATTGTAAGGCTT+GGG | - | chr4_4:47048214-47048233 | Msa0683980:intron | 45.0% | |
| CTAATTGCCTGAGCAAATCG+AGG | + | chr4_4:47048273-47048292 | None:intergenic | 45.0% | |
| !! | ACAGTATTGGTGGACTGTGA+AGG | - | chr4_4:47048500-47048519 | Msa0683980:CDS | 45.0% |
| GCAATAACACGAGCAATTGC+TGG | + | chr4_4:47048629-47048648 | None:intergenic | 45.0% | |
| TCAATATTTGATGCGCCCCT+AGG | + | chr4_4:47048832-47048851 | None:intergenic | 45.0% | |
| GGGCGCATCAAATATTGAAG+AGG | - | chr4_4:47048834-47048853 | Msa0683980:intron | 45.0% | |
| ACACTGCCATCATATCTTGG+AGG | - | chr4_4:47049017-47049036 | Msa0683980:intron | 45.0% | |
| AGAGTGCAACCTCATGAAAC+TGG | - | chr4_4:47049083-47049102 | Msa0683980:intron | 45.0% | |
| GAGTGCAACCTCATGAAACT+GGG | - | chr4_4:47049084-47049103 | Msa0683980:intron | 45.0% | |
| CAGCAGCAGCAGAATTGTTA+GGG | - | chr4_4:47049109-47049128 | Msa0683980:intron | 45.0% | |
| GGATGATATCAGTGACAACG+AGG | - | chr4_4:47049133-47049152 | Msa0683980:intron | 45.0% | |
| GTTGGATGTAGACGTAGTGA+TGG | + | chr4_4:47049164-47049183 | None:intergenic | 45.0% | |
| ACGAACCTGGTGTGTAAGAT+TGG | - | chr4_4:47049291-47049310 | Msa0683980:intron | 45.0% | |
| TTTGGCCAATCTTACACACC+AGG | + | chr4_4:47049299-47049318 | None:intergenic | 45.0% | |
| TGTGAATTAGGAGGTGGCAA+TGG | - | chr4_4:47049379-47049398 | Msa0683980:intron | 45.0% | |
| CACAGCTCAGCTGCAATAAA+AGG | - | chr4_4:47049441-47049460 | Msa0683980:intron | 45.0% | |
| GGTTTATATGGGAGAGAGGG+TGG | - | chr4_4:47044103-47044122 | Msa0683980:CDS | 50.0% | |
| ! | CCCCTTGTTTCATTGACGCA+TGG | - | chr4_4:47044248-47044267 | Msa0683980:CDS | 50.0% |
| ! | TGACTTTGGAAGCAGTGCTG+TGG | - | chr4_4:47044271-47044290 | Msa0683980:intron | 50.0% |
| ! | GACTTTGGAAGCAGTGCTGT+GGG | - | chr4_4:47044272-47044291 | Msa0683980:intron | 50.0% |
| ! | ACTTTGGAAGCAGTGCTGTG+GGG | - | chr4_4:47044273-47044292 | Msa0683980:intron | 50.0% |
| AGAGTAGATGCCCTTGTGTC+TGG | - | chr4_4:47044354-47044373 | Msa0683980:intron | 50.0% | |
| !! | CAAAAGTGGGCTGTGTTCAG+GGG | - | chr4_4:47044428-47044447 | Msa0683980:intron | 50.0% |
| ATGTGGGATCATCCAGGGTT+TGG | + | chr4_4:47045412-47045431 | None:intergenic | 50.0% | |
| GAGTCAGCACTTGCATCAGT+TGG | + | chr4_4:47045869-47045888 | None:intergenic | 50.0% | |
| !! | TCCAACTTGGTGCACTTTGC+AGG | - | chr4_4:47046136-47046155 | Msa0683980:intron | 50.0% |
| TCCTGCAAAGTGCACCAAGT+TGG | + | chr4_4:47046140-47046159 | None:intergenic | 50.0% | |
| ! | AGAGTCTAGCCGAGTCTTGT+TGG | - | chr4_4:47046163-47046182 | Msa0683980:intron | 50.0% |
| GGGTCAGCCCTGTACATTAT+CGG | + | chr4_4:47046631-47046650 | None:intergenic | 50.0% | |
| GCACCAACATCGAAAGGCTA+AGG | + | chr4_4:47046662-47046681 | None:intergenic | 50.0% | |
| GGTGACCCAATAACAGGTCT+TGG | + | chr4_4:47046850-47046869 | None:intergenic | 50.0% | |
| GACTTAGTCCTAGGCATGAG+GGG | - | chr4_4:47046892-47046911 | Msa0683980:intron | 50.0% | |
| AGAGCGTGGAAAATAGCAGG+TGG | + | chr4_4:47046931-47046950 | None:intergenic | 50.0% | |
| CGTAGAGCGTGGAAAATAGC+AGG | + | chr4_4:47046934-47046953 | None:intergenic | 50.0% | |
| !! | TCTCGGGTTGACTGCGAAAA+AGG | + | chr4_4:47047171-47047190 | None:intergenic | 50.0% |
| GACTCAACTCAACGAAGAGC+TGG | - | chr4_4:47047225-47047244 | Msa0683980:intron | 50.0% | |
| ! | GGTCGTCTGTACGCTCTTTT+TGG | - | chr4_4:47047594-47047613 | Msa0683980:CDS | 50.0% |
| CAAGAAGACAATACGCTGGC+GGG | - | chr4_4:47048107-47048126 | Msa0683980:intron | 50.0% | |
| CCCTGTCTCATTGTAAGGCT+TGG | - | chr4_4:47048213-47048232 | Msa0683980:intron | 50.0% | |
| CCCAAGCCTTACAATGAGAC+AGG | + | chr4_4:47048217-47048236 | None:intergenic | 50.0% | |
| ! | TGGGATAGCTTGCAGCACAT+TGG | - | chr4_4:47048233-47048252 | Msa0683980:intron | 50.0% |
| CAGCTGCCTCCAAGATATGA+TGG | + | chr4_4:47049026-47049045 | None:intergenic | 50.0% | |
| CCTAACAATTCTGCTGCTGC+TGG | + | chr4_4:47049111-47049130 | None:intergenic | 50.0% | |
| CCAGCAGCAGCAGAATTGTT+AGG | - | chr4_4:47049108-47049127 | Msa0683980:intron | 50.0% | |
| CAGCAGCAGAATTGTTAGGG+AGG | - | chr4_4:47049112-47049131 | Msa0683980:intron | 50.0% | |
| ! | GTTGTCATAGCTCTTGGTGC+TGG | - | chr4_4:47049263-47049282 | Msa0683980:intron | 50.0% |
| GGCATAAGCACTTAGGGGTC+TGG | - | chr4_4:47043748-47043767 | Msa0683980:CDS | 55.0% | |
| AGATGCCCTTGTGTCTGGCA+AGG | - | chr4_4:47044359-47044378 | Msa0683980:intron | 55.0% | |
| GCAGACCTTGCCAGACACAA+GGG | + | chr4_4:47044367-47044386 | None:intergenic | 55.0% | |
| TGCAGACCTTGCCAGACACA+AGG | + | chr4_4:47044368-47044387 | None:intergenic | 55.0% | |
| TTGTGTCTGGCAAGGTCTGC+AGG | - | chr4_4:47044367-47044386 | Msa0683980:intron | 55.0% | |
| TGTGTCTGGCAAGGTCTGCA+GGG | - | chr4_4:47044368-47044387 | Msa0683980:intron | 55.0% | |
| !! | GGGCCGTTTTCTGAGCATGT+TGG | - | chr4_4:47046393-47046412 | Msa0683980:intron | 55.0% |
| !! | GCATGAGGGGTGTTCTCGTT+TGG | - | chr4_4:47046905-47046924 | Msa0683980:intron | 55.0% |
| CTGCTGGTCCCAGTTTCATG+AGG | + | chr4_4:47049095-47049114 | None:intergenic | 55.0% | |
| TGACAGCGGTTCTCAACACC+TGG | + | chr4_4:47049223-47049242 | None:intergenic | 55.0% | |
| ! | GGTGCTGGAGTATACGAACC+TGG | - | chr4_4:47049278-47049297 | Msa0683980:intron | 55.0% |
| ! | GTGGGCTGTGTTCAGGGGTT+TGG | - | chr4_4:47044433-47044452 | Msa0683980:CDS | 60.0% |
| CGAGAACACCCCTCATGCCT+AGG | + | chr4_4:47046903-47046922 | None:intergenic | 60.0% | |
| AGGACTGGACACGTAGAGCG+TGG | + | chr4_4:47046945-47046964 | None:intergenic | 60.0% | |
| CTGGTTGCGTCGCGTCCCAA+AGG | - | chr4_4:47044203-47044222 | Msa0683980:CDS | 65.0% | |
| ! | TGCTGAACCGGCTCCTGTGC+AGG | - | chr4_4:47045155-47045174 | Msa0683980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47043031 | 47049692 | 47043031 | ID=Msa0683980;Name=Msa0683980 |
| chr4_4 | mRNA | 47043031 | 47049692 | 47043031 | ID=Msa0683980-mRNA-1;Parent=Msa0683980;Name=Msa0683980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=160|1|1|1|0.83|0.71|7|385|484 |
| chr4_4 | exon | 47043031 | 47043784 | 47043031 | ID=Msa0683980-mRNA-1:exon:11590;Parent=Msa0683980-mRNA-1 |
| chr4_4 | exon | 47044059 | 47044279 | 47044059 | ID=Msa0683980-mRNA-1:exon:11589;Parent=Msa0683980-mRNA-1 |
| chr4_4 | exon | 47044432 | 47044688 | 47044432 | ID=Msa0683980-mRNA-1:exon:11588;Parent=Msa0683980-mRNA-1 |
| chr4_4 | exon | 47045448 | 47045543 | 47045448 | ID=Msa0683980-mRNA-1:exon:11587;Parent=Msa0683980-mRNA-1 |
| chr4_4 | exon | 47047530 | 47047681 | 47047530 | ID=Msa0683980-mRNA-1:exon:11586;Parent=Msa0683980-mRNA-1 |
| chr4_4 | exon | 47048254 | 47048638 | 47048254 | ID=Msa0683980-mRNA-1:exon:11585;Parent=Msa0683980-mRNA-1 |
| chr4_4 | exon | 47049558 | 47049692 | 47049558 | ID=Msa0683980-mRNA-1:exon:11584;Parent=Msa0683980-mRNA-1 |
| chr4_4 | five_prime_UTR | 47049558 | 47049692 | 47049558 | ID=Msa0683980-mRNA-1:five_prime_utr;Parent=Msa0683980-mRNA-1 |
| chr4_4 | five_prime_UTR | 47048614 | 47048638 | 47048614 | ID=Msa0683980-mRNA-1:five_prime_utr;Parent=Msa0683980-mRNA-1 |
| chr4_4 | CDS | 47048254 | 47048613 | 47048254 | ID=Msa0683980-mRNA-1:cds;Parent=Msa0683980-mRNA-1 |
| chr4_4 | CDS | 47047530 | 47047681 | 47047530 | ID=Msa0683980-mRNA-1:cds;Parent=Msa0683980-mRNA-1 |
| chr4_4 | CDS | 47045448 | 47045543 | 47045448 | ID=Msa0683980-mRNA-1:cds;Parent=Msa0683980-mRNA-1 |
| chr4_4 | CDS | 47044432 | 47044688 | 47044432 | ID=Msa0683980-mRNA-1:cds;Parent=Msa0683980-mRNA-1 |
| chr4_4 | CDS | 47044059 | 47044279 | 47044059 | ID=Msa0683980-mRNA-1:cds;Parent=Msa0683980-mRNA-1 |
| chr4_4 | CDS | 47043416 | 47043784 | 47043416 | ID=Msa0683980-mRNA-1:cds;Parent=Msa0683980-mRNA-1 |
| chr4_4 | three_prime_UTR | 47043031 | 47043415 | 47043031 | ID=Msa0683980-mRNA-1:three_prime_utr;Parent=Msa0683980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
