AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0784480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784480 MtrunA17_Chr5g0436971 89.922 129 3 1 1 119 1 129 3.04e-82 236
Msa0784480 MtrunA17_Chr3g0113291 69.531 128 29 1 1 118 24 151 1.91e-61 184
Msa0784480 MtrunA17_Chr7g0242231 61.947 113 33 1 1 103 1 113 1.51e-46 146
Msa0784480 MtrunA17_Chr2g0316921 62.766 94 35 0 1 94 1 94 1.24e-40 131
Msa0784480 MtrunA17_Chr8g0360291 59.574 94 38 0 1 94 1 94 1.58e-38 126
Msa0784480 MtrunA17_Chr4g0046851 55.319 94 42 0 1 94 1 94 4.52e-35 117
Msa0784480 MtrunA17_Chr3g0127211 50.602 83 41 0 12 94 8 90 4.49e-28 99.0
Msa0784480 MtrunA17_Chr8g0346501 48.193 83 43 0 12 94 8 90 3.03e-26 94.4
Msa0784480 MtrunA17_Chr1g0188931 44.578 83 46 0 12 94 8 90 1.50e-25 92.4
Msa0784480 MtrunA17_Chr2g0316891 54.902 51 23 0 44 94 42 92 1.73e-15 67.4
Msa0784480 MtrunA17_Chr1g0188951 51.064 47 23 0 48 94 1 47 1.95e-15 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784480 AT2G40110.1 70.769 130 27 2 1 119 1 130 1.69e-61 184
Msa0784480 AT3G11230.1 64.341 129 36 1 1 119 1 129 4.73e-57 173
Msa0784480 AT3G11230.2 64.341 129 36 1 1 119 34 162 1.12e-56 173
Msa0784480 AT2G40110.2 68.224 107 34 0 1 107 1 107 2.83e-51 158
Msa0784480 AT3G11230.4 73.404 94 25 0 1 94 1 94 6.20e-48 149
Msa0784480 AT3G11230.3 73.404 94 25 0 1 94 34 127 1.47e-47 149
Msa0784480 AT3G55890.4 56.198 121 51 1 1 119 1 121 1.04e-43 139
Msa0784480 AT3G55890.1 56.198 121 51 1 1 119 1 121 1.04e-43 139
Msa0784480 AT3G08990.2 53.125 128 50 1 1 118 1 128 1.10e-43 139
Msa0784480 AT3G08990.1 53.125 128 50 1 1 118 1 128 1.10e-43 139
Msa0784480 AT3G08990.3 53.125 128 50 1 1 118 1 128 1.10e-43 139
Msa0784480 AT2G40110.4 75.904 83 20 0 1 83 1 83 1.71e-43 137
Msa0784480 AT2G40110.3 75.904 83 20 0 1 83 1 83 1.71e-43 137
Msa0784480 AT5G53940.1 53.846 130 48 2 1 119 1 129 5.23e-42 135
Msa0784480 AT3G55890.3 63.830 94 34 0 1 94 1 94 1.26e-41 133
Msa0784480 AT3G55890.2 63.830 94 34 0 1 94 1 94 1.26e-41 133
Msa0784480 AT4G27745.2 54.217 83 38 0 12 94 8 90 7.61e-30 103
Msa0784480 AT4G27745.3 54.217 83 38 0 12 94 8 90 7.61e-30 103
Msa0784480 AT4G27745.1 54.217 83 38 0 12 94 8 90 7.61e-30 103
Msa0784480 AT4G27745.4 54.217 83 38 0 12 94 8 90 7.61e-30 103
Msa0784480 AT4G27740.1 40.741 81 48 0 14 94 10 90 2.03e-19 77.0

Find 45 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTGATGTTCAATGAATT+TGG 0.123623 5_2:+69127531 Msa0784480:three_prime_UTR
GTCCTGATGGCAGCAATTAT+TGG 0.259271 5_2:+69127413 Msa0784480:CDS
TGTTACCTTTGGTTTGGTTT+TGG 0.273266 5_2:-69124384 None:intergenic
TCAATGAATTTGGATTTATA+AGG 0.316897 5_2:+69127541 Msa0784480:three_prime_UTR
TACAGTGTGAATGTTTCTAT+TGG 0.322176 5_2:+69126887 Msa0784480:intron
TAAGGACAATTTAGCAAAAT+CGG 0.324041 5_2:+69127559 Msa0784480:three_prime_UTR
TTGACCAGGTTCAAGGTGTC+TGG 0.365136 5_2:+69127391 Msa0784480:intron
GCCCCGAAAACCATTTGAAT+TGG 0.365740 5_2:+69127588 Msa0784480:three_prime_UTR
TCCTGATGGCAGCAATTATT+GGG 0.368015 5_2:+69127414 Msa0784480:CDS
TGTTTCTATTGGAGAATTAG+AGG 0.372709 5_2:+69126898 Msa0784480:CDS
TTGTTTGTTGTTCATCTTGA+AGG 0.413695 5_2:+69124577 Msa0784480:CDS
GTTGAATGTTACCTTTGGTT+TGG 0.431009 5_2:-69124390 None:intergenic
ATGAGAATCACCAATTCAAA+TGG 0.447332 5_2:-69127598 None:intergenic
ACCCAATAATTGCTGCCATC+AGG 0.450327 5_2:-69127415 None:intergenic
CAAGGATAACTTACACCTTA+CGG 0.472783 5_2:-69126608 None:intergenic
GAGGACAGAAATATGATGAC+TGG 0.475545 5_2:+69126917 Msa0784480:CDS
TTGTGAAGATGTTGTTTCAA+AGG 0.476254 5_2:+69124642 Msa0784480:CDS
TTCAAGGTGTCTGGTCCTGA+TGG 0.507863 5_2:+69127400 Msa0784480:CDS
CAGGCTTTCCACAGCAGACA+TGG 0.524156 5_2:+69126570 Msa0784480:intron
AGAAGAGTACGTAAGAAATG+AGG 0.534507 5_2:-69124359 None:intergenic
TTTCAACACCATGTGTTGCA+TGG 0.544712 5_2:-69127441 None:intergenic
GTCGGTTGTGGATCAATCCT+CGG 0.549786 5_2:+69126968 Msa0784480:CDS
TTGTTGTTCATCTTGAAGGA+AGG 0.554689 5_2:+69124581 Msa0784480:CDS
AATTCAATTGTCAATGAGGA+CGG 0.563540 5_2:-69127489 None:intergenic
TTTCCACAGCAGACATGGGA+AGG 0.566067 5_2:+69126575 Msa0784480:CDS
ATTCAATTGTCAATGAGGAC+GGG 0.570367 5_2:-69127488 None:intergenic
GATCTTGTTCAGTTATTGCG+TGG 0.576508 5_2:+69124527 Msa0784480:intron
GTTGTGGATCAATCCTCGGT+TGG 0.576717 5_2:+69126972 Msa0784480:CDS
ATTCATTGAACATCAACAGA+GGG 0.592764 5_2:-69127527 None:intergenic
AGGCTTTCCACAGCAGACAT+GGG 0.597650 5_2:+69126571 Msa0784480:intron
AAGCCTTCCCATGTCTGCTG+TGG 0.600078 5_2:-69126578 None:intergenic
TGGGTTAGCCATGCAACACA+TGG 0.601436 5_2:+69127433 Msa0784480:CDS
ACATCTTCACAAAGAGCAAG+AGG 0.603930 5_2:-69124631 None:intergenic
AGGACAGAAATATGATGACT+GGG 0.607783 5_2:+69126918 Msa0784480:CDS
CATCTTCACAAAGAGCAAGA+GGG 0.619095 5_2:-69124630 None:intergenic
ATCTTCACAAAGAGCAAGAG+GGG 0.623684 5_2:-69124629 None:intergenic
TCTCTCCAAAACCAAACCAA+AGG 0.628109 5_2:+69124379 Msa0784480:five_prime_UTR
ATACAATTCAATTGTCAATG+AGG 0.629874 5_2:-69127493 None:intergenic
GAAGGCTTATCTCTTCCGTA+AGG 0.633340 5_2:+69126593 Msa0784480:CDS
GTAGAACACGACAAGATGCG+TGG 0.648848 5_2:-69124300 None:intergenic
TAGAACACGACAAGATGCGT+GGG 0.660783 5_2:-69124299 None:intergenic
GTCTTACATATGTCCAACCG+AGG 0.682634 5_2:-69126985 None:intergenic
TTCATTGAACATCAACAGAG+GGG 0.688248 5_2:-69127526 None:intergenic
AATTCATTGAACATCAACAG+AGG 0.707624 5_2:-69127528 None:intergenic
GATGACTGGGATGCATACTG+TGG 0.714746 5_2:+69126931 Msa0784480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAATTTATAAATTAG+GGG + chr5_2:69125568-69125587 Msa0784480:intron 10.0%
!!! AATTTTCTTAGTTGAATTAT+GGG + chr5_2:69124550-69124569 Msa0784480:exon 15.0%
!! TCATAAAAAATCATCAAAAT+TGG - chr5_2:69124700-69124719 None:intergenic 15.0%
!!! TTTAAGTTTTTGTTTATGTT+TGG + chr5_2:69124734-69124753 Msa0784480:intron 15.0%
!!! ATTTGTAATTTATTTTACTG+TGG + chr5_2:69125196-69125215 Msa0784480:intron 15.0%
!!! TATTTGGTTTATAACAATTT+AGG + chr5_2:69125275-69125294 Msa0784480:intron 15.0%
!!! ATTTGGTTTATAACAATTTA+GGG + chr5_2:69125276-69125295 Msa0784480:intron 15.0%
!! AATAAGTAAAGATAAACAAT+CGG + chr5_2:69125472-69125491 Msa0784480:intron 15.0%
!!! ATTAAGAAAAAGTTGAATTT+TGG - chr5_2:69126448-69126467 None:intergenic 15.0%
!!! ACTTTTTCTTAATGTTTTAA+CGG + chr5_2:69126455-69126474 Msa0784480:intron 15.0%
!!! ATTGATAATAATTAGAACAA+GGG + chr5_2:69127248-69127267 Msa0784480:intron 15.0%
!! GTCAAATATAAATCACAAAA+GGG - chr5_2:69124450-69124469 None:intergenic 20.0%
!! AGTCAAATATAAATCACAAA+AGG - chr5_2:69124451-69124470 None:intergenic 20.0%
!!! GAATTTTCTTAGTTGAATTA+TGG + chr5_2:69124549-69124568 Msa0784480:exon 20.0%
!!! TGCTATTAACTAAAACTTTT+TGG + chr5_2:69125942-69125961 Msa0784480:intron 20.0%
!!! TTTTAACGGTTTTTTTTAGT+TGG + chr5_2:69126469-69126488 Msa0784480:intron 20.0%
!! ATATGTATATATATTCTGAC+TGG + chr5_2:69126523-69126542 Msa0784480:intron 20.0%
!!! ACAGTAATGTTTTTTATTCA+TGG + chr5_2:69126772-69126791 Msa0784480:intron 20.0%
!!! CATTGATAATAATTAGAACA+AGG + chr5_2:69127247-69127266 Msa0784480:intron 20.0%
!! TCAATGAATTTGGATTTATA+AGG + chr5_2:69127541-69127560 Msa0784480:three_prime_UTR 20.0%
! AGACAGTTAAAGAACAAAAA+TGG - chr5_2:69124503-69124522 None:intergenic 25.0%
! TTGAAACTTCAACAAAACTA+CGG - chr5_2:69124793-69124812 None:intergenic 25.0%
!!! TGTAATTTATTTTACTGTGG+TGG + chr5_2:69125199-69125218 Msa0784480:intron 25.0%
!!! GTAATTTATTTTACTGTGGT+GGG + chr5_2:69125200-69125219 Msa0784480:intron 25.0%
! ATAATCACAGTTTCAGTTTA+TGG + chr5_2:69125228-69125247 Msa0784480:intron 25.0%
!! ACAGCTTAAATTTTGTGTTA+AGG + chr5_2:69125403-69125422 Msa0784480:intron 25.0%
!!! ATGCTTAAGCACTTTTATTT+CGG - chr5_2:69125603-69125622 None:intergenic 25.0%
! AGATGAAAGACAATAACATA+AGG - chr5_2:69125813-69125832 None:intergenic 25.0%
! TAAGCATTTATAAGTTTCCA+AGG - chr5_2:69125872-69125891 None:intergenic 25.0%
!! AAACCATTCTATTCTGATTT+TGG + chr5_2:69126300-69126319 Msa0784480:intron 25.0%
!!! TATAAACGACCAAGTTTTTT+AGG + chr5_2:69126361-69126380 Msa0784480:intron 25.0%
!!! ATAAACGACCAAGTTTTTTA+GGG + chr5_2:69126362-69126381 Msa0784480:intron 25.0%
! GATGATATTTCCATTTAAAC+CGG - chr5_2:69126388-69126407 None:intergenic 25.0%
!!! ATGTTTTTTATTCATGGCTT+TGG + chr5_2:69126778-69126797 Msa0784480:intron 25.0%
!!! TGTTTTTTATTCATGGCTTT+GGG + chr5_2:69126779-69126798 Msa0784480:intron 25.0%
! ACTAACTGCAAAATATAATG+CGG - chr5_2:69126829-69126848 None:intergenic 25.0%
! ATACAATTCAATTGTCAATG+AGG - chr5_2:69127496-69127515 None:intergenic 25.0%
! TAAGGACAATTTAGCAAAAT+CGG + chr5_2:69127559-69127578 Msa0784480:three_prime_UTR 25.0%
AAAACGTTGAATGTTACCTT+TGG - chr5_2:69124398-69124417 None:intergenic 30.0%
!! TTGTTTGTTGTTCATCTTGA+AGG + chr5_2:69124577-69124596 Msa0784480:CDS 30.0%
!! TTGTGAAGATGTTGTTTCAA+AGG + chr5_2:69124642-69124661 Msa0784480:CDS 30.0%
TTGTTGAAGTTTCAACGATT+AGG + chr5_2:69124798-69124817 Msa0784480:intron 30.0%
TTGTTATAGTTTCGACGATT+AGG + chr5_2:69124897-69124916 Msa0784480:intron 30.0%
TCGAAACTTCAACAAAACTA+TGG - chr5_2:69124991-69125010 None:intergenic 30.0%
TCGAAACTTCAACAAAACTA+TGG - chr5_2:69124991-69125010 None:intergenic 30.0%
TTTCAGTTTATGGTGATAGT+TGG + chr5_2:69125238-69125257 Msa0784480:intron 30.0%
TTTGTGTTAAGGTACACAAA+TGG + chr5_2:69125414-69125433 Msa0784480:intron 30.0%
ATGGTCGGAAATTAAAGTTA+TGG + chr5_2:69125433-69125452 Msa0784480:intron 30.0%
GAATTTATAAATTAGGGGTG+AGG + chr5_2:69125573-69125592 Msa0784480:intron 30.0%
!! GAAATAAAAGTGCTTAAGCA+TGG + chr5_2:69125602-69125621 Msa0784480:intron 30.0%
CAATGATGCAAGATACAAAA+TGG + chr5_2:69125633-69125652 Msa0784480:intron 30.0%
TTTGTGTACCAATACACAAA+TGG - chr5_2:69125747-69125766 None:intergenic 30.0%
AGACAATAACATAAGGTTGA+AGG - chr5_2:69125806-69125825 None:intergenic 30.0%
TGTACTTCAGAATTAGACAA+TGG - chr5_2:69126119-69126138 None:intergenic 30.0%
GTGAATTATGTAGATTGTAG+AGG - chr5_2:69126232-69126251 None:intergenic 30.0%
TCACTGAGCTGTTATATTAT+TGG + chr5_2:69126248-69126267 Msa0784480:intron 30.0%
TGGTTTCATATATTTCACAG+AGG + chr5_2:69126268-69126287 Msa0784480:intron 30.0%
GAACCAAAATCAGAATAGAA+TGG - chr5_2:69126306-69126325 None:intergenic 30.0%
TGGAATCGACATTTCTTTAT+TGG + chr5_2:69126489-69126508 Msa0784480:intron 30.0%
GATTTCGGTTTCATTGAAAA+TGG - chr5_2:69126682-69126701 None:intergenic 30.0%
ACCTTTGATTACAAACTACA+AGG - chr5_2:69126742-69126761 None:intergenic 30.0%
! GTTTGTAATCAAAGGTGTAA+AGG + chr5_2:69126746-69126765 Msa0784480:intron 30.0%
! TACAGTGTGAATGTTTCTAT+TGG + chr5_2:69126887-69126906 Msa0784480:intron 30.0%
! TGTTTCTATTGGAGAATTAG+AGG + chr5_2:69126898-69126917 Msa0784480:CDS 30.0%
CATTAAGTTAAGTTACCCTT+TGG + chr5_2:69127049-69127068 Msa0784480:intron 30.0%
! ATTTTCCTTCTTTGTACTTC+TGG - chr5_2:69127105-69127124 None:intergenic 30.0%
AAGGAAAATCTGTTCTTGAA+CGG + chr5_2:69127116-69127135 Msa0784480:intron 30.0%
AGCGATATATAAGTATGTCA+TGG + chr5_2:69127349-69127368 Msa0784480:intron 30.0%
AATTCAATTGTCAATGAGGA+CGG - chr5_2:69127492-69127511 None:intergenic 30.0%
ATTCATTGAACATCAACAGA+GGG - chr5_2:69127530-69127549 None:intergenic 30.0%
AATTCATTGAACATCAACAG+AGG - chr5_2:69127531-69127550 None:intergenic 30.0%
CTGTTGATGTTCAATGAATT+TGG + chr5_2:69127531-69127550 Msa0784480:three_prime_UTR 30.0%
! TCACCAATTCAAATGGTTTT+CGG - chr5_2:69127594-69127613 None:intergenic 30.0%
ATGAGAATCACCAATTCAAA+TGG - chr5_2:69127601-69127620 None:intergenic 30.0%
! AGAAGAGTACGTAAGAAATG+AGG - chr5_2:69124362-69124381 None:intergenic 35.0%
!!! TGTTACCTTTGGTTTGGTTT+TGG - chr5_2:69124387-69124406 None:intergenic 35.0%
GTTGAATGTTACCTTTGGTT+TGG - chr5_2:69124393-69124412 None:intergenic 35.0%
! TTGTTGTTCATCTTGAAGGA+AGG + chr5_2:69124581-69124600 Msa0784480:CDS 35.0%
TTGTTGAAGTTTCGACGATT+AGG + chr5_2:69124996-69125015 Msa0784480:intron 35.0%
TTGTTGAAGTTTCGACGATT+AGG + chr5_2:69124996-69125015 Msa0784480:intron 35.0%
GGATAACAGCTTTGCTTATT+TGG + chr5_2:69125259-69125278 Msa0784480:intron 35.0%
! CACGCTTGATAATCGATTTA+AGG + chr5_2:69125365-69125384 Msa0784480:intron 35.0%
! TCGATTTAAGGTTGCGTTTA+TGG + chr5_2:69125377-69125396 Msa0784480:intron 35.0%
TGTTAAGGTACACAAATGGT+CGG + chr5_2:69125418-69125437 Msa0784480:intron 35.0%
GTCGGAAATTAAAGTTATGG+TGG + chr5_2:69125436-69125455 Msa0784480:intron 35.0%
! AAAGTTATGGTGGAACTAGA+AGG + chr5_2:69125446-69125465 Msa0784480:intron 35.0%
AGATAAACAATCGGAGTGAT+CGG + chr5_2:69125481-69125500 Msa0784480:intron 35.0%
! ACTTGACTGTATTACTGGTT+GGG + chr5_2:69125518-69125537 Msa0784480:intron 35.0%
TTTAATCGTCATGCTTCAAC+TGG - chr5_2:69125551-69125570 None:intergenic 35.0%
CAACTATTCTCAGGATGTAT+CGG - chr5_2:69125671-69125690 None:intergenic 35.0%
GTCATCAACCATTTGTGTAT+TGG + chr5_2:69125736-69125755 Msa0784480:intron 35.0%
TGAAGGTGGTCATTAAATCA+AGG - chr5_2:69125789-69125808 None:intergenic 35.0%
CAATAACATAAGGTTGAAGG+TGG - chr5_2:69125803-69125822 None:intergenic 35.0%
!! GTTTTGGCATTAGCACAATT+TGG - chr5_2:69125839-69125858 None:intergenic 35.0%
TATGAGTGTATCTGACAAAG+TGG + chr5_2:69125983-69126002 Msa0784480:intron 35.0%
AGAAGTTACTTCTGTGCAAA+AGG + chr5_2:69126054-69126073 Msa0784480:intron 35.0%
TTACTTCTGTGCAAAAGGAA+AGG + chr5_2:69126059-69126078 Msa0784480:intron 35.0%
!! GGAAGTAATCCTACTTTTGA+AGG + chr5_2:69126083-69126102 Msa0784480:intron 35.0%
GCAAATAGTCCTTCAAAAGT+AGG - chr5_2:69126095-69126114 None:intergenic 35.0%
!!! TTTTTTAGGGCCGGTTTAAA+TGG + chr5_2:69126375-69126394 Msa0784480:intron 35.0%
!! TTACTTGTGCTGTTTCATTC+AGG + chr5_2:69126551-69126570 Msa0784480:intron 35.0%
CAAGGATAACTTACACCTTA+CGG - chr5_2:69126611-69126630 None:intergenic 35.0%
GTGTAAGTTATCCTTGACAT+TGG + chr5_2:69126615-69126634 Msa0784480:intron 35.0%
ATGGTGAAACCAAAGTTATC+AGG - chr5_2:69126663-69126682 None:intergenic 35.0%
ATGCAGGACAAAAGGTTAAA+GGG - chr5_2:69126710-69126729 None:intergenic 35.0%
! CTTTTGTCCTGCATCATTTT+GGG + chr5_2:69126716-69126735 Msa0784480:intron 35.0%
! GCCTTGTAGTTTGTAATCAA+AGG + chr5_2:69126738-69126757 Msa0784480:intron 35.0%
AGGACAGAAATATGATGACT+GGG + chr5_2:69126918-69126937 Msa0784480:CDS 35.0%
ACTTAATGCAGCATAGAAAC+AGG - chr5_2:69127037-69127056 None:intergenic 35.0%
! AAAAGCCAGAAGTACAAAGA+AGG + chr5_2:69127097-69127116 Msa0784480:intron 35.0%
ATTCAATTGTCAATGAGGAC+GGG - chr5_2:69127491-69127510 None:intergenic 35.0%
TTCATTGAACATCAACAGAG+GGG - chr5_2:69127529-69127548 None:intergenic 35.0%
! ACCAATTCAAATGGTTTTCG+GGG - chr5_2:69127592-69127611 None:intergenic 35.0%
! CACCAATTCAAATGGTTTTC+GGG - chr5_2:69127593-69127612 None:intergenic 35.0%
TCTCTCCAAAACCAAACCAA+AGG + chr5_2:69124379-69124398 Msa0784480:five_prime_UTR 40.0%
GATCTTGTTCAGTTATTGCG+TGG + chr5_2:69124527-69124546 Msa0784480:intron 40.0%
ATCTTCACAAAGAGCAAGAG+GGG - chr5_2:69124632-69124651 None:intergenic 40.0%
CATCTTCACAAAGAGCAAGA+GGG - chr5_2:69124633-69124652 None:intergenic 40.0%
ACATCTTCACAAAGAGCAAG+AGG - chr5_2:69124634-69124653 None:intergenic 40.0%
CGATGATGCACTATGATTCA+TGG + chr5_2:69124841-69124860 Msa0784480:intron 40.0%
AATCAGATTCGCAGTGACTT+CGG - chr5_2:69125162-69125181 None:intergenic 40.0%
CACTTGACTGTATTACTGGT+TGG + chr5_2:69125517-69125536 Msa0784480:intron 40.0%
AGTGCTTAAGCATGGTATTG+TGG + chr5_2:69125610-69125629 Msa0784480:intron 40.0%
! CATCCTGAGAATAGTTGATG+CGG + chr5_2:69125674-69125693 Msa0784480:intron 40.0%
!! CCAAGGAAGCATACATGTTT+TGG - chr5_2:69125855-69125874 None:intergenic 40.0%
CCAAAACATGTATGCTTCCT+TGG + chr5_2:69125852-69125871 Msa0784480:intron 40.0%
TAAACCGGCCCTAAAAAACT+TGG - chr5_2:69126373-69126392 None:intergenic 40.0%
!! AGTGAAAGGTACCAATGTCA+AGG - chr5_2:69126629-69126648 None:intergenic 40.0%
GTGTTCTGTCCTGATAACTT+TGG + chr5_2:69126651-69126670 Msa0784480:intron 40.0%
GGTTAAAGGGTGGAAGATTT+CGG - chr5_2:69126697-69126716 None:intergenic 40.0%
GATGCAGGACAAAAGGTTAA+AGG - chr5_2:69126711-69126730 None:intergenic 40.0%
CCAAAATGATGCAGGACAAA+AGG - chr5_2:69126718-69126737 None:intergenic 40.0%
! CCTTTTGTCCTGCATCATTT+TGG + chr5_2:69126715-69126734 Msa0784480:intron 40.0%
TATAATGCGGCTAGAGCTAA+TGG - chr5_2:69126816-69126835 None:intergenic 40.0%
GAGGACAGAAATATGATGAC+TGG + chr5_2:69126917-69126936 Msa0784480:CDS 40.0%
! GTTACCCTTTGGTTTCTTTC+AGG + chr5_2:69127060-69127079 Msa0784480:intron 40.0%
GTCTCCTGAAAGAAACCAAA+GGG - chr5_2:69127067-69127086 None:intergenic 40.0%
AGTCTCCTGAAAGAAACCAA+AGG - chr5_2:69127068-69127087 None:intergenic 40.0%
TAATTACTCTGTCAGTGTCG+TGG + chr5_2:69127284-69127303 Msa0784480:intron 40.0%
TGCCAAACATCAACACATGT+CGG + chr5_2:69127310-69127329 Msa0784480:intron 40.0%
TATATCGCTCAAAACCCATG+TGG - chr5_2:69127338-69127357 None:intergenic 40.0%
! GAGTTTTTGCTCTTTTGACC+AGG + chr5_2:69127377-69127396 Msa0784480:intron 40.0%
TCCTGATGGCAGCAATTATT+GGG + chr5_2:69127414-69127433 Msa0784480:CDS 40.0%
TTTCAACACCATGTGTTGCA+TGG - chr5_2:69127444-69127463 None:intergenic 40.0%
CGATGTCGCGCTATGATTTA+TGG + chr5_2:69125039-69125058 Msa0784480:intron 45.0%
CTACCGCATCAACTATTCTC+AGG - chr5_2:69125680-69125699 None:intergenic 45.0%
! GAGAATAGTTGATGCGGTAG+TGG + chr5_2:69125680-69125699 Msa0784480:intron 45.0%
CTTCTGTGCAAAAGGAAAGG+TGG + chr5_2:69126062-69126081 Msa0784480:intron 45.0%
!!! ACGACCAAGTTTTTTAGGGC+CGG + chr5_2:69126366-69126385 Msa0784480:intron 45.0%
GAAGGCTTATCTCTTCCGTA+AGG + chr5_2:69126593-69126612 Msa0784480:CDS 45.0%
AGGACAGAACACGTAGTGAA+AGG - chr5_2:69126643-69126662 None:intergenic 45.0%
CAGGACAAAAGGTTAAAGGG+TGG - chr5_2:69126707-69126726 None:intergenic 45.0%
TACAAGGCCCAAAATGATGC+AGG - chr5_2:69126726-69126745 None:intergenic 45.0%
TAGAGCTAATGGAGATTCGG+AGG - chr5_2:69126805-69126824 None:intergenic 45.0%
GGCTAGAGCTAATGGAGATT+CGG - chr5_2:69126808-69126827 None:intergenic 45.0%
! GTGGCTGACATTTTCTGTGT+CGG + chr5_2:69126950-69126969 Msa0784480:CDS 45.0%
!!! GACATTTTCTGTGTCGGTTG+TGG + chr5_2:69126956-69126975 Msa0784480:CDS 45.0%
GTCTTACATATGTCCAACCG+AGG - chr5_2:69126988-69127007 None:intergenic 45.0%
! CACCGACATGTGTTGATGTT+TGG - chr5_2:69127315-69127334 None:intergenic 45.0%
! TGCTCTTTTGACCAGGTTCA+AGG + chr5_2:69127384-69127403 Msa0784480:intron 45.0%
GTCCTGATGGCAGCAATTAT+TGG + chr5_2:69127413-69127432 Msa0784480:CDS 45.0%
ACCCAATAATTGCTGCCATC+AGG - chr5_2:69127418-69127437 None:intergenic 45.0%
GCCCCGAAAACCATTTGAAT+TGG + chr5_2:69127588-69127607 Msa0784480:three_prime_UTR 45.0%
!! TTAAAATGAATTTATAAATT+AGG + chr5_2:69125566-69125585 Msa0784480:intron 5.0%
!! TAAAATGAATTTATAAATTA+GGG + chr5_2:69125567-69125586 Msa0784480:intron 5.0%
CGATGACGCGCTATGATTCA+TGG + chr5_2:69124940-69124959 Msa0784480:intron 50.0%
! GGGGCACTTGACTGTATTAC+TGG + chr5_2:69125513-69125532 Msa0784480:intron 50.0%
!! TGGTGCTGTTTCGGCAGTTT+CGG - chr5_2:69125708-69125727 None:intergenic 50.0%
AAACTGCCGAAACAGCACCA+TGG + chr5_2:69125708-69125727 Msa0784480:intron 50.0%
AGGCTTTCCACAGCAGACAT+GGG + chr5_2:69126571-69126590 Msa0784480:intron 50.0%
TTTCCACAGCAGACATGGGA+AGG + chr5_2:69126575-69126594 Msa0784480:CDS 50.0%
GATGACTGGGATGCATACTG+TGG + chr5_2:69126931-69126950 Msa0784480:CDS 50.0%
GTCGGTTGTGGATCAATCCT+CGG + chr5_2:69126968-69126987 Msa0784480:CDS 50.0%
GTTGTGGATCAATCCTCGGT+TGG + chr5_2:69126972-69126991 Msa0784480:CDS 50.0%
!! AACACATGTCGGTGCCACAT+GGG + chr5_2:69127321-69127340 Msa0784480:intron 50.0%
! TTGACCAGGTTCAAGGTGTC+TGG + chr5_2:69127391-69127410 Msa0784480:intron 50.0%
! TTCAAGGTGTCTGGTCCTGA+TGG + chr5_2:69127400-69127419 Msa0784480:CDS 50.0%
!! TGGGTTAGCCATGCAACACA+TGG + chr5_2:69127433-69127452 Msa0784480:CDS 50.0%
AATCGGAGTGATCGGCCTTG+AGG + chr5_2:69125489-69125508 Msa0784480:intron 55.0%
!! ATGGTTGATGACCGCTGCCA+TGG - chr5_2:69125728-69125747 None:intergenic 55.0%
CAGGCTTTCCACAGCAGACA+TGG + chr5_2:69126570-69126589 Msa0784480:intron 55.0%
AAGCCTTCCCATGTCTGCTG+TGG - chr5_2:69126581-69126600 None:intergenic 55.0%
!! CAACACATGTCGGTGCCACA+TGG + chr5_2:69127320-69127339 Msa0784480:intron 55.0%
AGGACCAGACACCTTGAACC+TGG - chr5_2:69127398-69127417 None:intergenic 55.0%
!! CCGCTGCCATGGTGCTGTTT+CGG - chr5_2:69125717-69125736 None:intergenic 60.0%
CCGAAACAGCACCATGGCAG+CGG + chr5_2:69125714-69125733 Msa0784480:intron 60.0%
CGGAGTGATCGGCCTTGAGG+CGG + chr5_2:69125492-69125511 Msa0784480:intron 65.0%
GGAGTGATCGGCCTTGAGGC+GGG + chr5_2:69125493-69125512 Msa0784480:intron 65.0%
GAGTGATCGGCCTTGAGGCG+GGG + chr5_2:69125494-69125513 Msa0784480:intron 65.0%
CAGTCAAGTGCCCCGCCTCA+AGG - chr5_2:69125507-69125526 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 69124301 69127679 69124301 ID=Msa0784480;Name=Msa0784480
chr5_2 mRNA 69124301 69127679 69124301 ID=Msa0784480-mRNA-1;Parent=Msa0784480;Name=Msa0784480-mRNA-1;_AED=0.16;_eAED=0.16;_QI=129|0.8|0.83|1|0.8|0.83|6|196|119
chr5_2 exon 69124301 69124400 69124301 ID=Msa0784480-mRNA-1:exon:20782;Parent=Msa0784480-mRNA-1
chr5_2 exon 69124539 69124663 69124539 ID=Msa0784480-mRNA-1:exon:20783;Parent=Msa0784480-mRNA-1
chr5_2 exon 69126573 69126616 69126573 ID=Msa0784480-mRNA-1:exon:20784;Parent=Msa0784480-mRNA-1
chr5_2 exon 69126892 69127000 69126892 ID=Msa0784480-mRNA-1:exon:20785;Parent=Msa0784480-mRNA-1
chr5_2 exon 69127082 69127107 69127082 ID=Msa0784480-mRNA-1:exon:20786;Parent=Msa0784480-mRNA-1
chr5_2 exon 69127399 69127679 69127399 ID=Msa0784480-mRNA-1:exon:20787;Parent=Msa0784480-mRNA-1
chr5_2 five_prime_UTR 69124301 69124400 69124301 ID=Msa0784480-mRNA-1:five_prime_utr;Parent=Msa0784480-mRNA-1
chr5_2 five_prime_UTR 69124539 69124567 69124539 ID=Msa0784480-mRNA-1:five_prime_utr;Parent=Msa0784480-mRNA-1
chr5_2 CDS 69124568 69124663 69124568 ID=Msa0784480-mRNA-1:cds;Parent=Msa0784480-mRNA-1
chr5_2 CDS 69126573 69126616 69126573 ID=Msa0784480-mRNA-1:cds;Parent=Msa0784480-mRNA-1
chr5_2 CDS 69126892 69127000 69126892 ID=Msa0784480-mRNA-1:cds;Parent=Msa0784480-mRNA-1
chr5_2 CDS 69127082 69127107 69127082 ID=Msa0784480-mRNA-1:cds;Parent=Msa0784480-mRNA-1
chr5_2 CDS 69127399 69127483 69127399 ID=Msa0784480-mRNA-1:cds;Parent=Msa0784480-mRNA-1
chr5_2 three_prime_UTR 69127484 69127679 69127484 ID=Msa0784480-mRNA-1:three_prime_utr;Parent=Msa0784480-mRNA-1
Gene Sequence

>Msa0784480

ATGGGAAGATTGTTTGTTGTTCATCTTGAAGGAAGGATCTATAGCTGTAAACACTGTAGAACCCCTCTTGCTCTTTGTGAAGATGTTGTTTCAAAGGCTTTCCACAGCAGACATGGGAAGGCTTATCTCTTCCGTAAGGTTGTGAATGTTTCTATTGGAGAATTAGAGGACAGAAATATGATGACTGGGATGCATACTGTGGCTGACATTTTCTGTGTCGGTTGTGGATCAATCCTCGGTTGGACATATGAGACTGCTCATGAAAAAAGCCAGAAGTTCAAGGTGTCTGGTCCTGATGGCAGCAATTATTGGGTTAGCCATGCAACACATGGTGTTGAAAGTGATGCAGATGATGCTTAA

Protein sequence

>Msa0784480

MGRLFVVHLEGRIYSCKHCRTPLALCEDVVSKAFHSRHGKAYLFRKVVNVSIGELEDRNMMTGMHTVADIFCVGCGSILGWTYETAHEKSQKFKVSGPDGSNYWVSHATHGVESDADDA*