Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669430 | XP_013454909.1 | 83.333 | 1056 | 77 | 8 | 21 | 978 | 1 | 1055 | 0.0 | 1658 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669430 | A0A072UH12 | 83.333 | 1056 | 77 | 8 | 21 | 978 | 1 | 1055 | 0.0 | 1658 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074360 | Msa0669430 | 0.825529 | 4.461756e-54 | -8.615850e-47 |
| Msa0077560 | Msa0669430 | 0.807225 | 5.608999e-50 | -8.615850e-47 |
| Msa0078130 | Msa0669430 | 0.811311 | 7.458189e-51 | -8.615850e-47 |
| Msa0641990 | Msa0669430 | 0.826634 | 2.435648e-54 | -8.615850e-47 |
| Msa0642550 | Msa0669430 | 0.811474 | 6.874586e-51 | -8.615850e-47 |
| Msa0648040 | Msa0669430 | 0.802592 | 5.215225e-49 | -8.615850e-47 |
| Msa0669430 | Msa0681050 | 0.836662 | 8.204387e-57 | -8.615850e-47 |
| Msa0669430 | Msa0709440 | 0.804792 | 1.821942e-49 | -8.615850e-47 |
| Msa0669430 | Msa0716890 | 0.821471 | 3.967921e-53 | -8.615850e-47 |
| Msa0669430 | Msa0754450 | 0.809424 | 1.905116e-50 | -8.615850e-47 |
| Msa0669430 | Msa0799450 | 0.802674 | 5.014639e-49 | -8.615850e-47 |
| Msa0669430 | Msa0837710 | 0.851322 | 9.570929e-61 | -8.615850e-47 |
| Msa0669430 | Msa0879920 | 0.815730 | 7.960419e-52 | -8.615850e-47 |
| Msa0669430 | Msa0989370 | 0.813944 | 1.980536e-51 | -8.615850e-47 |
| Msa0669430 | Msa1084530 | 0.805230 | 1.475519e-49 | -8.615850e-47 |
| Msa0669430 | Msa1171290 | 0.807580 | 4.716146e-50 | -8.615850e-47 |
| Msa0669430 | Msa1183740 | 0.801785 | 7.641629e-49 | -8.615850e-47 |
| Msa0669430 | Msa1218820 | 0.825617 | 4.252275e-54 | -8.615850e-47 |
| Msa0669430 | Msa1365500 | 0.843956 | 1.018273e-58 | -8.615850e-47 |
| Msa0669430 | Msa1366150 | 0.822691 | 2.069131e-53 | -8.615850e-47 |
| Msa0669430 | Msa1387440 | 0.837750 | 4.323746e-57 | -8.615850e-47 |
| Msa0669430 | Msa1459010 | 0.827050 | 1.937874e-54 | -8.615850e-47 |
| Msa0123320 | Msa0669430 | 0.805693 | 1.179990e-49 | -8.615850e-47 |
| Msa0168050 | Msa0669430 | 0.802906 | 4.491311e-49 | -8.615850e-47 |
| Msa0373500 | Msa0669430 | 0.813341 | 2.688805e-51 | -8.615850e-47 |
| Msa0459740 | Msa0669430 | 0.815177 | 1.056849e-51 | -8.615850e-47 |
| Msa0468620 | Msa0669430 | 0.827771 | 1.301149e-54 | -8.615850e-47 |
| Msa0481890 | Msa0669430 | 0.804905 | 1.725562e-49 | -8.615850e-47 |
| Msa0249850 | Msa0669430 | 0.807003 | 6.248377e-50 | -8.615850e-47 |
| Msa0269210 | Msa0669430 | 0.825226 | 5.261847e-54 | -8.615850e-47 |
| Msa0502510 | Msa0669430 | 0.808186 | 3.504465e-50 | -8.615850e-47 |
| Msa0514500 | Msa0669430 | 0.829961 | 3.840782e-55 | -8.615850e-47 |
| Msa0545920 | Msa0669430 | 0.833088 | 6.518964e-56 | -8.615850e-47 |
| Msa0574900 | Msa0669430 | 0.808309 | 3.298986e-50 | -8.615850e-47 |
| Msa0601720 | Msa0669430 | 0.837982 | 3.768233e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669430 | MtrunA17_Chr4g0008601 | 83.333 | 1056 | 77 | 8 | 21 | 978 | 1 | 1055 | 0.0 | 1658 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669430 | AT3G56870.1 | 31.405 | 242 | 125 | 8 | 766 | 970 | 449 | 686 | 4.23e-19 | 93.2 |
| Msa0669430 | AT3G56870.2 | 31.405 | 242 | 125 | 8 | 766 | 970 | 449 | 686 | 4.23e-19 | 93.2 |
Find 222 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATAATATCTTCACCTTTC+TGG | 0.145004 | 4_4:+11113532 | None:intergenic |
| CTGGTTGACAATAACCTTTC+AGG | 0.180532 | 4_4:+11113551 | None:intergenic |
| CCATTGAAACAATCACTTTC+AGG | 0.184542 | 4_4:+11115114 | None:intergenic |
| GTCCTTCATGCACTTCTTCT+TGG | 0.205534 | 4_4:+11115257 | None:intergenic |
| AATTTGCTTGAGTGTTAAAA+TGG | 0.242009 | 4_4:+11115464 | None:intergenic |
| GATTGCTTCGCGTCGTATTC+AGG | 0.264672 | 4_4:+11113674 | None:intergenic |
| TAGAAGTGGTTCCAATCTTC+AGG | 0.268920 | 4_4:-11112748 | Msa0669430:CDS |
| GATTGCTTCTCCTCGTATTC+AGG | 0.275509 | 4_4:+11113911 | None:intergenic |
| GAACCACTTCTAGAAGTCTT+TGG | 0.283608 | 4_4:+11112759 | None:intergenic |
| TTCTCGTTCAGCAACTCATC+TGG | 0.283858 | 4_4:-11112703 | Msa0669430:CDS |
| TACAGATGGGGCTGAGGTTC+AGG | 0.286950 | 4_4:-11113768 | Msa0669430:CDS |
| TGGTCAACTGGCACAATCTC+TGG | 0.290447 | 4_4:+11115219 | None:intergenic |
| GAATTCAATGAAGGAAATTA+TGG | 0.314322 | 4_4:-11112580 | Msa0669430:CDS |
| GACGGTGAAGCCATCTGATA+TGG | 0.327031 | 4_4:-11114257 | Msa0669430:CDS |
| AAAGTGCTTTGTACATTTGC+TGG | 0.333385 | 4_4:-11115974 | Msa0669430:CDS |
| ACTCAATCCTGATGGGTATC+TGG | 0.335210 | 4_4:-11113954 | Msa0669430:CDS |
| TATCCTCTCACCATCATATA+AGG | 0.338463 | 4_4:+11113643 | None:intergenic |
| TCTTTATCACTAGCCACTTC+AGG | 0.338632 | 4_4:+11114097 | None:intergenic |
| GCCGCCCACGAGATACATTA+AGG | 0.344571 | 4_4:+11115703 | None:intergenic |
| GTCTTCTTTACTTTCTCTAC+TGG | 0.344879 | 4_4:+11114537 | None:intergenic |
| CACCAGAGGGCGAGAACTCT+TGG | 0.354337 | 4_4:+11114815 | None:intergenic |
| AAATCATGATTAGCCACTTT+AGG | 0.356101 | 4_4:+11113842 | None:intergenic |
| AGGTCTTCAAATTCAATTGC+AGG | 0.365169 | 4_4:+11114181 | None:intergenic |
| ATCTCTTCTGATTGGTCAAC+TGG | 0.368468 | 4_4:+11115207 | None:intergenic |
| TAAAGTGGCTAATCATGATT+TGG | 0.369451 | 4_4:-11113840 | Msa0669430:CDS |
| TTCACTTGATACTTTATATC+CGG | 0.379672 | 4_4:-11111350 | Msa0669430:three_prime_UTR |
| CAATCTCTGGGGAGGACATT+GGG | 0.380065 | 4_4:+11115232 | None:intergenic |
| CAATCAAATTTAACTTCAAC+AGG | 0.389678 | 4_4:+11114598 | None:intergenic |
| CAATCAAATTTAACTTCAAC+AGG | 0.389678 | 4_4:+11114778 | None:intergenic |
| GTATTACTAATAAGATTGAT+TGG | 0.393885 | 4_4:-11111424 | Msa0669430:three_prime_UTR |
| ATTCCGTTTCACTTAGATTC+TGG | 0.397490 | 4_4:+11111496 | None:intergenic |
| CACAAGATGTAGTGCGTAAA+GGG | 0.398113 | 4_4:-11111597 | Msa0669430:CDS |
| CAACCTCATCATCCATGTTA+TGG | 0.404621 | 4_4:+11115505 | None:intergenic |
| ACGAGAAGAATTACGAATCT+TGG | 0.404681 | 4_4:+11112719 | None:intergenic |
| CAATCAAATTTAACTTCAAC+AGG | 0.407071 | 4_4:+11114958 | None:intergenic |
| CCTGAAAGTGATTGTTTCAA+TGG | 0.407091 | 4_4:-11115114 | Msa0669430:CDS |
| CTTGGAAGCGCCCTGAAGAT+TGG | 0.409102 | 4_4:+11112737 | None:intergenic |
| GGTCAACTAGCGCAATCTCT+TGG | 0.410909 | 4_4:+11114680 | None:intergenic |
| GGCCATTTCACCATCTTCTC+AGG | 0.413736 | 4_4:-11113451 | Msa0669430:CDS |
| CAATCTCTTGGGAGGACATT+GGG | 0.416373 | 4_4:+11114512 | None:intergenic |
| CTGAGAGTCTCCATGAAATC+AGG | 0.417726 | 4_4:+11115315 | None:intergenic |
| AGAAGATGATCCTGATTTCA+TGG | 0.417890 | 4_4:-11115325 | Msa0669430:CDS |
| ATTGAGTCCATGTTCGTTAG+TGG | 0.429000 | 4_4:+11113970 | None:intergenic |
| CGTCAACTAGCACAATCTCT+TGG | 0.430970 | 4_4:+11114500 | None:intergenic |
| TCTCGTTCAGCAACTCATCT+GGG | 0.432277 | 4_4:-11112702 | Msa0669430:CDS |
| GTGAACTAGCACAGCCTCTT+GGG | 0.433261 | 4_4:+11115041 | None:intergenic |
| TTCCTGAGAAGATGGTGAAA+TGG | 0.433301 | 4_4:+11113449 | None:intergenic |
| TGAAAACTGAACCTGATGTT+TGG | 0.434144 | 4_4:-11115560 | Msa0669430:CDS |
| TTTGCTGGGTCAGACACTTA+AGG | 0.436772 | 4_4:-11115959 | Msa0669430:intron |
| CATTATATCAAAACTTTCAA+AGG | 0.436866 | 4_4:-11115744 | Msa0669430:CDS |
| ATGAGTTCCCACCGTCTAGC+AGG | 0.438424 | 4_4:-11114453 | Msa0669430:CDS |
| TGGTCAACTAGCACAATCTC+TGG | 0.441642 | 4_4:+11114859 | None:intergenic |
| GTGGAAAGCTGTGCCAGGTT+AGG | 0.441663 | 4_4:-11111546 | Msa0669430:CDS |
| GGCCAAGAGTTCTCGCCCTC+TGG | 0.441838 | 4_4:-11114817 | Msa0669430:CDS |
| TCTTTAGTTTCCTTATATGA+TGG | 0.444730 | 4_4:-11113653 | Msa0669430:CDS |
| GGTGAACTAGCACAGCCTCT+TGG | 0.445129 | 4_4:+11115040 | None:intergenic |
| TCTCGACCGGAACAGTCATC+TGG | 0.447529 | 4_4:+11114910 | None:intergenic |
| AGATCTTGACTCTGTAGGTC+TGG | 0.447645 | 4_4:-11114077 | Msa0669430:CDS |
| ATGTGGTCTTCTGGGGATGA+TGG | 0.450680 | 4_4:+11115363 | None:intergenic |
| CATTGAAGAGTTGTAGTTGA+CGG | 0.455084 | 4_4:-11111263 | None:intergenic |
| TCATCACATGCCCAAACATC+AGG | 0.456881 | 4_4:+11115549 | None:intergenic |
| TAGTAATACAAGTATTAAGA+AGG | 0.456930 | 4_4:+11111438 | None:intergenic |
| TCTCTACTGGAACAGTCATC+TGG | 0.458490 | 4_4:+11114550 | None:intergenic |
| TCTCTACCGGAACAGTCATC+TGG | 0.463906 | 4_4:+11114730 | None:intergenic |
| GTCTTCTTTACTTTCTCTAC+CGG | 0.465887 | 4_4:+11114717 | None:intergenic |
| GTCTTCTTTACTTTCTCTAC+CGG | 0.465887 | 4_4:+11115077 | None:intergenic |
| GGTCAACTGGCACAATCTCT+GGG | 0.466778 | 4_4:+11115220 | None:intergenic |
| CAATCTCTTGGGAAGACATT+GGG | 0.467063 | 4_4:+11114692 | None:intergenic |
| GTCAACTAGCGCAATCTCTT+GGG | 0.468261 | 4_4:+11114681 | None:intergenic |
| CAATCTCTGGGGAAGACATT+GGG | 0.468305 | 4_4:+11114872 | None:intergenic |
| TTTCAAAGGTGGGTTTGTTA+CGG | 0.471550 | 4_4:-11115730 | Msa0669430:CDS |
| GCCACTTCAGGTGGTGAGAC+TGG | 0.473358 | 4_4:+11114109 | None:intergenic |
| CATCTAGTATCTCTTCTGAT+TGG | 0.478606 | 4_4:+11115019 | None:intergenic |
| CCCTCTAGTGGAGATTCAGC+TGG | 0.480061 | 4_4:-11115162 | Msa0669430:CDS |
| CGTCTAGTATCTCTTCTGAT+TGG | 0.482857 | 4_4:+11114839 | None:intergenic |
| GAAAACTGAACCTGATGTTT+GGG | 0.483915 | 4_4:-11115559 | Msa0669430:CDS |
| CCTCAATCCGGATGGATGTC+CGG | 0.485013 | 4_4:-11113717 | Msa0669430:CDS |
| CAGCCTCTTGGGAAGACATT+GGG | 0.486265 | 4_4:+11115052 | None:intergenic |
| AATGAGCCAGATGACTGTTC+TGG | 0.486329 | 4_4:-11114376 | Msa0669430:CDS |
| GATGGGCCAGATGACTGTTC+CGG | 0.486994 | 4_4:-11114916 | Msa0669430:CDS |
| ACAATCTCTGGGGAGGACAT+TGG | 0.487714 | 4_4:+11115231 | None:intergenic |
| CCTGAAAATGATTGTTTCGA+TGG | 0.488342 | 4_4:-11114934 | Msa0669430:CDS |
| AAAATTTGATTCAACTCGGC+CGG | 0.489123 | 4_4:+11111331 | None:intergenic |
| CCTTTACGCACTACATCTTG+TGG | 0.489160 | 4_4:+11111598 | None:intergenic |
| GTCAACTAGCACAATCTCTT+GGG | 0.491340 | 4_4:+11114501 | None:intergenic |
| GATGGGCCAGATGACTGTTC+CGG | 0.493004 | 4_4:-11114736 | Msa0669430:CDS |
| TATATCAAAACTTTCAAAGG+TGG | 0.497940 | 4_4:-11115741 | Msa0669430:CDS |
| ATATCAAAACTTTCAAAGGT+GGG | 0.498052 | 4_4:-11115740 | Msa0669430:CDS |
| ACCAATGTCATCATCACCTT+CGG | 0.498819 | 4_4:+11113880 | None:intergenic |
| TCCATGTTCGTTAGTGGCGC+AGG | 0.500439 | 4_4:+11113976 | None:intergenic |
| AGACGAACCGGACATCCATC+CGG | 0.502544 | 4_4:+11113710 | None:intergenic |
| ACTAGTCTCACCACCTAAAG+TGG | 0.502741 | 4_4:-11113855 | Msa0669430:CDS |
| GTCTTCTTTACTTTCTCGAC+CGG | 0.505077 | 4_4:+11114897 | None:intergenic |
| GATGACTACAACGCTCCATT+CGG | 0.510540 | 4_4:+11115769 | None:intergenic |
| CGTCTAGTATCTCTTCTGAT+TGG | 0.517639 | 4_4:+11114659 | None:intergenic |
| CGTCTAGTATCTCTTCTGAT+TGG | 0.517639 | 4_4:+11115199 | None:intergenic |
| ACAATCTCTGGGGAAGACAT+TGG | 0.518090 | 4_4:+11114871 | None:intergenic |
| CCACAAGATGTAGTGCGTAA+AGG | 0.518359 | 4_4:-11111598 | Msa0669430:CDS |
| CTGAAAGTGATTGTTTCAAT+GGG | 0.519366 | 4_4:-11115113 | Msa0669430:CDS |
| GAATCGTCAGAGAGACGAAC+CGG | 0.520134 | 4_4:+11113698 | None:intergenic |
| AATGGGCAAGATGACTGTTC+CGG | 0.521162 | 4_4:-11115096 | Msa0669430:CDS |
| AAAAGAGTTGAATTCAATGA+AGG | 0.523260 | 4_4:-11112589 | Msa0669430:CDS |
| AGAATGAATTAAATAACAAA+TGG | 0.523962 | 4_4:-11114306 | Msa0669430:CDS |
| AAGATCATGCATTGATGTAA+TGG | 0.524697 | 4_4:-11115595 | Msa0669430:CDS |
| TACTGAACAAGGCCTCAATC+CGG | 0.527531 | 4_4:-11113729 | Msa0669430:CDS |
| CAAGAGTTCTCGCCCTCTGG+TGG | 0.528739 | 4_4:-11114814 | Msa0669430:CDS |
| GGTCAACTAGCACAATCTCT+GGG | 0.528926 | 4_4:+11114860 | None:intergenic |
| CAAGAGTTCTCGCCCACTAG+TGG | 0.533230 | 4_4:-11114634 | Msa0669430:CDS |
| TCTCTACCAGAACAGTCATC+TGG | 0.533768 | 4_4:+11114370 | None:intergenic |
| ACAATCTCTTGGGAGGACAT+TGG | 0.535240 | 4_4:+11114511 | None:intergenic |
| TTGCCAGAATCTAAGTGAAA+CGG | 0.536185 | 4_4:-11111499 | Msa0669430:exon |
| CCGGACATCCATCCGGATTG+AGG | 0.536667 | 4_4:+11113717 | None:intergenic |
| GCATCACCATTCTTATCAGT+CGG | 0.537879 | 4_4:+11112846 | None:intergenic |
| AGCAGGTGGAAAGCTGTGCC+AGG | 0.538818 | 4_4:-11111551 | Msa0669430:CDS |
| CAATCAGAAGAGATACTAGA+TGG | 0.539309 | 4_4:-11115018 | Msa0669430:CDS |
| AAGTGCTTTGTACATTTGCT+GGG | 0.540248 | 4_4:-11115973 | Msa0669430:CDS |
| AGAAGTGGTTCCAATCTTCA+GGG | 0.542550 | 4_4:-11112747 | Msa0669430:CDS |
| TACAACGCTCCATTCGGCCT+AGG | 0.543426 | 4_4:+11115775 | None:intergenic |
| TGAATCTACAGATGGGGCTG+AGG | 0.543709 | 4_4:-11113774 | Msa0669430:CDS |
| CAAGAGTTCTCACCCTCTAG+TGG | 0.545884 | 4_4:-11115174 | Msa0669430:CDS |
| ATTGAGGCCTTGTTCAGTAG+TGG | 0.547060 | 4_4:+11113733 | None:intergenic |
| CCTGAAAATGATTGTTCCGA+TGG | 0.549174 | 4_4:-11114574 | Msa0669430:CDS |
| CCTGAAAATGATTGTTCCGA+TGG | 0.549174 | 4_4:-11114754 | Msa0669430:CDS |
| ATAGCATTCGCTGATGAAGC+AGG | 0.553372 | 4_4:-11111568 | Msa0669430:CDS |
| GCAATCTCTTGGGAAGACAT+TGG | 0.553704 | 4_4:+11114691 | None:intergenic |
| TCCTGCGCCACTAACGAACA+TGG | 0.554632 | 4_4:-11113977 | Msa0669430:CDS |
| TTGCAGGAAAGCTTGCAGAC+TGG | 0.556193 | 4_4:+11114197 | None:intergenic |
| CTCTGCTCCACTACTGAACA+AGG | 0.558590 | 4_4:-11113740 | Msa0669430:CDS |
| AAGGTTATTGTCAACCAGAA+AGG | 0.559038 | 4_4:-11113546 | Msa0669430:intron |
| CATGTCAAACCTAGGCCGAA+TGG | 0.559584 | 4_4:-11115784 | Msa0669430:CDS |
| CGACAAACCAGATACCCATC+AGG | 0.561270 | 4_4:+11113947 | None:intergenic |
| TGCATTGATGTAATGGAGGA+AGG | 0.561397 | 4_4:-11115588 | Msa0669430:CDS |
| GCAGTTCTCGAGACAACACC+GGG | 0.561525 | 4_4:+11112816 | None:intergenic |
| ACAGCCTCTTGGGAAGACAT+TGG | 0.562222 | 4_4:+11115051 | None:intergenic |
| ATAATAATTTCAGAATGCAA+AGG | 0.563309 | 4_4:-11112888 | Msa0669430:intron |
| ACCAGTCTCACCACCTGAAG+TGG | 0.563854 | 4_4:-11114110 | Msa0669430:CDS |
| GGAAAAGCTCTGCAAAGCCA+TGG | 0.566566 | 4_4:-11113430 | Msa0669430:CDS |
| CATCCTCATAGAACCTAACC+TGG | 0.568751 | 4_4:+11111533 | None:intergenic |
| GATAAAGATCTTGACTCTGT+AGG | 0.568827 | 4_4:-11114082 | Msa0669430:CDS |
| AGCAGCTGAATCTCCACTAG+TGG | 0.569696 | 4_4:+11114621 | None:intergenic |
| ACTGATATCAACGGTCTCCA+TGG | 0.569844 | 4_4:+11113413 | None:intergenic |
| TGAGAGGATACATGTTAAAG+AGG | 0.569994 | 4_4:-11113630 | Msa0669430:CDS |
| GATGGCTTCACCGTCTGTAG+TGG | 0.570139 | 4_4:+11114265 | None:intergenic |
| GAACATGGACTCAATCCTGA+TGG | 0.572883 | 4_4:-11113962 | Msa0669430:CDS |
| TTTCCTTATATGATGGTGAG+AGG | 0.575102 | 4_4:-11113646 | Msa0669430:CDS |
| GAAATTCTCATGTCAAACCT+AGG | 0.575558 | 4_4:-11115792 | Msa0669430:CDS |
| ATTCCAAAGACTTCTAGAAG+TGG | 0.576866 | 4_4:-11112762 | Msa0669430:CDS |
| CAAAGCTGCATGGTCCTGAA+AGG | 0.577844 | 4_4:-11113565 | Msa0669430:CDS |
| AAGCAATCATTTGCTTCCGA+AGG | 0.579054 | 4_4:-11113896 | Msa0669430:CDS |
| CTGAAAATGATTGTTTCGAT+GGG | 0.579755 | 4_4:-11114933 | Msa0669430:CDS |
| CGCAGCTGAATCACCACTAG+AGG | 0.580370 | 4_4:+11114981 | None:intergenic |
| AGTAAAGATGAATCTACAGA+TGG | 0.580743 | 4_4:-11113782 | Msa0669430:CDS |
| TAGGTTCTATGAGGATGATG+AGG | 0.581252 | 4_4:-11111527 | Msa0669430:CDS |
| GTAAAGATGAATCTACAGAT+GGG | 0.582960 | 4_4:-11113781 | Msa0669430:CDS |
| CAAGAGTTCTTACCCTCTAG+TGG | 0.583480 | 4_4:-11114994 | Msa0669430:CDS |
| GAAGTCCTTAATGTATCTCG+TGG | 0.587088 | 4_4:-11115708 | Msa0669430:CDS |
| AATGGTGATGCAGAAAGGCC+CGG | 0.587653 | 4_4:-11112834 | Msa0669430:CDS |
| GTGCCAGGTTAGGTTCTATG+AGG | 0.588042 | 4_4:-11111536 | Msa0669430:CDS |
| TCATGATTAGCCACTTTAGG+TGG | 0.588900 | 4_4:+11113845 | None:intergenic |
| GCCAGCTGAATCTCCACTAG+AGG | 0.593732 | 4_4:+11115161 | None:intergenic |
| CTCGTTCAGCAACTCATCTG+GGG | 0.595242 | 4_4:-11112701 | Msa0669430:CDS |
| ATAAGAATGGTGATGCAGAA+AGG | 0.598876 | 4_4:-11112839 | Msa0669430:CDS |
| TGGAGGTGAAGAACTACTGT+CGG | 0.599354 | 4_4:+11111639 | None:intergenic |
| AGGAAGAGAAAACGCTCACA+AGG | 0.601064 | 4_4:-11115423 | Msa0669430:CDS |
| TTAAAGATAGCTGCAAAGCA+AGG | 0.601950 | 4_4:-11115443 | Msa0669430:CDS |
| GACCAAGAAGAAGTGCATGA+AGG | 0.602772 | 4_4:-11115259 | Msa0669430:CDS |
| AATCCATAACATGGATGATG+AGG | 0.603932 | 4_4:-11115508 | Msa0669430:CDS |
| CTGAATCCCTGCTAGACGGT+GGG | 0.604605 | 4_4:+11114446 | None:intergenic |
| ATAACAATATCCATATCAGA+TGG | 0.610792 | 4_4:+11114247 | None:intergenic |
| GGAACAGTCATCTGGCCCAT+CGG | 0.611163 | 4_4:+11114558 | None:intergenic |
| TGCAGTTCTCGAGACAACAC+CGG | 0.613251 | 4_4:+11112815 | None:intergenic |
| GTTTGGGCATGTGATGATGA+TGG | 0.613837 | 4_4:-11115543 | Msa0669430:CDS |
| GAACAAGGCCTCAATCCGGA+TGG | 0.614300 | 4_4:-11113725 | Msa0669430:CDS |
| ATCATCCCCAGAAGACCACA+TGG | 0.615755 | 4_4:-11115361 | Msa0669430:CDS |
| ACAGAGCCGACTGATAAGAA+TGG | 0.616463 | 4_4:-11112852 | Msa0669430:CDS |
| ACACAGAAATAACTCTAGAG+TGG | 0.616610 | 4_4:-11114336 | Msa0669430:CDS |
| GCTGAATCCCTGCTAGACGG+TGG | 0.619939 | 4_4:+11114445 | None:intergenic |
| GGAACAGTCATCTGGCCCAT+CGG | 0.621661 | 4_4:+11114738 | None:intergenic |
| GCAGCTGAATCTCCACCAGA+GGG | 0.621917 | 4_4:+11114802 | None:intergenic |
| AACTGGCACAATCTCTGGGG+AGG | 0.623394 | 4_4:+11115224 | None:intergenic |
| CCACCCAATGTCTTCCCAAG+AGG | 0.624646 | 4_4:-11115055 | Msa0669430:CDS |
| ATTGAAAATTTGATTCAACT+CGG | 0.625081 | 4_4:+11111327 | None:intergenic |
| GCAGCTGAATCTCCACTAGT+GGG | 0.625765 | 4_4:+11114622 | None:intergenic |
| CCTCTTGGGAAGACATTGGG+TGG | 0.626302 | 4_4:+11115055 | None:intergenic |
| TGTTCAGACAATCCATAACA+TGG | 0.627170 | 4_4:-11115517 | Msa0669430:CDS |
| AACATGGACTCAATCCTGAT+GGG | 0.628467 | 4_4:-11113961 | Msa0669430:CDS |
| ATCATGCATTGATGTAATGG+AGG | 0.629058 | 4_4:-11115592 | Msa0669430:CDS |
| AACTAGCACAATCTCTTGGG+AGG | 0.629465 | 4_4:+11114504 | None:intergenic |
| TCTCTTGGGAAGACATTGGG+TGG | 0.630023 | 4_4:+11114695 | None:intergenic |
| TTATCACTAGCCACTTCAGG+TGG | 0.631593 | 4_4:+11114100 | None:intergenic |
| TCCTTAATGTATCTCGTGGG+CGG | 0.631765 | 4_4:-11115704 | Msa0669430:CDS |
| CCAGCTGAATCTCCACTAGA+GGG | 0.631830 | 4_4:+11115162 | None:intergenic |
| TGAGTTCCCACCGTCTAGCA+GGG | 0.632117 | 4_4:-11114452 | Msa0669430:CDS |
| GCAGCTGAATCCCTGCTAGA+CGG | 0.632908 | 4_4:+11114442 | None:intergenic |
| AGCAGCTGAATCTCCACCAG+AGG | 0.633262 | 4_4:+11114801 | None:intergenic |
| GTTTCTATGACTGATATCAA+CGG | 0.636051 | 4_4:+11113404 | None:intergenic |
| CATAACATGGATGATGAGGT+TGG | 0.640089 | 4_4:-11115504 | Msa0669430:CDS |
| AGTGAAGATGAATATACAGC+TGG | 0.641533 | 4_4:-11114019 | Msa0669430:CDS |
| CTGAAAATGATTGTTCCGAT+GGG | 0.641922 | 4_4:-11114573 | Msa0669430:CDS |
| CTGAAAATGATTGTTCCGAT+GGG | 0.641922 | 4_4:-11114753 | Msa0669430:CDS |
| TCTCTGGGGAGGACATTGGG+TGG | 0.651120 | 4_4:+11115235 | None:intergenic |
| GCAGCTGAATCACCACTAGA+GGG | 0.651747 | 4_4:+11114982 | None:intergenic |
| AACATGGATGATGAGGTTGG+TGG | 0.652716 | 4_4:-11115501 | Msa0669430:CDS |
| GAAGGTAGTTCAAAGCTGCA+TGG | 0.654248 | 4_4:-11113575 | Msa0669430:CDS |
| AGGTTCTATGAGGATGATGA+GGG | 0.655810 | 4_4:-11111526 | Msa0669430:CDS |
| TCTCTGGGGAAGACATTGGG+TGG | 0.656973 | 4_4:+11114875 | None:intergenic |
| TCTCTTGGGAGGACATTGGG+TGG | 0.657225 | 4_4:+11114515 | None:intergenic |
| AGATGATTCACCTGAATACG+AGG | 0.657273 | 4_4:-11113921 | Msa0669430:CDS |
| ACTTCTTGTGATGAACATGA+AGG | 0.664199 | 4_4:-11113593 | Msa0669430:CDS |
| CAATCAGAAGAGATACTAGA+CGG | 0.664717 | 4_4:-11114838 | Msa0669430:CDS |
| TGATGACGATGATGATGCAA+AGG | 0.666860 | 4_4:-11115622 | Msa0669430:CDS |
| TAAAGATGAATCTACAGATG+GGG | 0.666951 | 4_4:-11113780 | Msa0669430:CDS |
| CAATCAGAAGAGATACTAGA+CGG | 0.667769 | 4_4:-11114658 | Msa0669430:CDS |
| CAATCAGAAGAGATACTAGA+CGG | 0.667769 | 4_4:-11115198 | Msa0669430:CDS |
| GCATTCGCTGATGAAGCAGG+TGG | 0.668767 | 4_4:-11111565 | Msa0669430:CDS |
| TTACGCACTACATCTTGTGG+AGG | 0.669959 | 4_4:+11111601 | None:intergenic |
| GAATCTGAAGAGATACTAGA+CGG | 0.671927 | 4_4:-11114478 | Msa0669430:CDS |
| AAGTCCTTAATGTATCTCGT+GGG | 0.675628 | 4_4:-11115707 | Msa0669430:CDS |
| GTCAACTGGCACAATCTCTG+GGG | 0.687753 | 4_4:+11115221 | None:intergenic |
| GTCAACTAGCACAATCTCTG+GGG | 0.706401 | 4_4:+11114861 | None:intergenic |
| TCCGAAGGTGATGATGACAT+TGG | 0.719898 | 4_4:-11113881 | Msa0669430:CDS |
| TTTGAGATATAAAGTAAACG+AGG | 0.761951 | 4_4:-11112520 | Msa0669430:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATAAACAAATGTA+AGG | + | chr4_4:11114445-11114464 | None:intergenic | 10.0% |
| !!! | ATAAATTAGTCTTTTATTAA+AGG | - | chr4_4:11115051-11115070 | Msa0669430:CDS | 10.0% |
| !!! | AGATTTTTGAATTTAAGTTT+TGG | + | chr4_4:11111666-11111685 | None:intergenic | 15.0% |
| !! | AGAATGAATTAAATAACAAA+TGG | - | chr4_4:11113038-11113057 | Msa0669430:intron | 15.0% |
| !! | TTTATAGTTCAAAAAAATGT+GGG | + | chr4_4:11114037-11114056 | None:intergenic | 15.0% |
| !! | AAATTTATTGAGCAAAAATA+TGG | - | chr4_4:11114110-11114129 | Msa0669430:CDS | 15.0% |
| !! | AAATGTAAGGAAAATAATAT+AGG | + | chr4_4:11114432-11114451 | None:intergenic | 15.0% |
| !!! | TACAATTCAATGTTTTAAAT+AGG | + | chr4_4:11115245-11115264 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGATTTTTCAA+GGG | - | chr4_4:11115273-11115292 | Msa0669430:CDS | 15.0% |
| !! | CATTATATCAAAACTTTCAA+AGG | - | chr4_4:11111600-11111619 | Msa0669430:CDS | 20.0% |
| !! | AGATCAAATCAAAATACTTA+AGG | + | chr4_4:11113980-11113999 | None:intergenic | 20.0% |
| !! | GTTTATAGTTCAAAAAAATG+TGG | + | chr4_4:11114038-11114057 | None:intergenic | 20.0% |
| !! | TCAGAAAAAAAAAGATTGTT+GGG | + | chr4_4:11114060-11114079 | None:intergenic | 20.0% |
| !! | AAAACTATCATGATATGAAA+AGG | - | chr4_4:11114155-11114174 | Msa0669430:CDS | 20.0% |
| !! | TTTCTCCATAATATATTATC+TGG | - | chr4_4:11114272-11114291 | Msa0669430:CDS | 20.0% |
| !! | TTCTCCATAATATATTATCT+GGG | - | chr4_4:11114273-11114292 | Msa0669430:CDS | 20.0% |
| !! | AAAACCCAGATAATATATTA+TGG | + | chr4_4:11114280-11114299 | None:intergenic | 20.0% |
| !!! | ATATATTATCTGGGTTTTAA+TGG | - | chr4_4:11114282-11114301 | Msa0669430:CDS | 20.0% |
| !! | ATAATATAGGTTAAACATTG+AGG | + | chr4_4:11114419-11114438 | None:intergenic | 20.0% |
| !! | ATAATAATTTCAGAATGCAA+AGG | - | chr4_4:11114456-11114475 | Msa0669430:CDS | 20.0% |
| !!! | GAATAACTCTATTTTTGTTA+GGG | + | chr4_4:11114566-11114585 | None:intergenic | 20.0% |
| !!! | AATTAGTCTTTTATTAAAGG+AGG | - | chr4_4:11115054-11115073 | Msa0669430:CDS | 20.0% |
| !!! | AATGTTTTAAATAGGAACAT+AGG | + | chr4_4:11115237-11115256 | None:intergenic | 20.0% |
| !!! | CTTGTAATTTTGATTTTTCA+AGG | - | chr4_4:11115272-11115291 | Msa0669430:CDS | 20.0% |
| !!! | TAACCATTATTTTACAGAAA+CGG | + | chr4_4:11115446-11115465 | None:intergenic | 20.0% |
| !! | TAGTAATACAAGTATTAAGA+AGG | + | chr4_4:11115909-11115928 | None:intergenic | 20.0% |
| !! | GTATTACTAATAAGATTGAT+TGG | - | chr4_4:11115920-11115939 | Msa0669430:intron | 20.0% |
| !!! | TTTTATACTTGATAGACAAA+GGG | - | chr4_4:11115952-11115971 | Msa0669430:intron | 20.0% |
| !! | ATTGAAAATTTGATTCAACT+CGG | + | chr4_4:11116020-11116039 | None:intergenic | 20.0% |
| !!! | TTCTTTATGCTTGTATTTTA+AGG | - | chr4_4:11116047-11116066 | Msa0669430:intron | 20.0% |
| ! | TTGATTGTTTGAATTAATGC+AGG | - | chr4_4:11111343-11111362 | Msa0669430:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTACTGATTCCAG+TGG | - | chr4_4:11111526-11111545 | Msa0669430:CDS | 25.0% |
| ! | TATATCAAAACTTTCAAAGG+TGG | - | chr4_4:11111603-11111622 | Msa0669430:CDS | 25.0% |
| ! | ATATCAAAACTTTCAAAGGT+GGG | - | chr4_4:11111604-11111623 | Msa0669430:CDS | 25.0% |
| !! | AATTTGCTTGAGTGTTAAAA+TGG | + | chr4_4:11111883-11111902 | None:intergenic | 25.0% |
| !! | CAATCAAATTTAACTTCAAC+AGG | + | chr4_4:11112389-11112408 | None:intergenic | 25.0% |
| !! | CAATCAAATTTAACTTCAAC+AGG | + | chr4_4:11112389-11112408 | None:intergenic | 25.0% |
| !! | CAATCAAATTTAACTTCAAC+AGG | + | chr4_4:11112389-11112408 | None:intergenic | 25.0% |
| ! | ATAACAATATCCATATCAGA+TGG | + | chr4_4:11113100-11113119 | None:intergenic | 25.0% |
| !! | TCTTTAGTTTCCTTATATGA+TGG | - | chr4_4:11113691-11113710 | Msa0669430:CDS | 25.0% |
| ! | GTCAGAAAAAAAAAGATTGT+TGG | + | chr4_4:11114061-11114080 | None:intergenic | 25.0% |
| !! | CAATAAATTTTTCGTCTATC+TGG | + | chr4_4:11114100-11114119 | None:intergenic | 25.0% |
| ! | AAAATATGGTTGTATAGCTA+TGG | - | chr4_4:11114124-11114143 | Msa0669430:CDS | 25.0% |
| !! | TATCATGATAGTTTTCATGT+AGG | + | chr4_4:11114150-11114169 | None:intergenic | 25.0% |
| ! | AGAAAAAAATCCATAGATTG+AGG | + | chr4_4:11114326-11114345 | None:intergenic | 25.0% |
| ! | TAGGTAATTCATTAGTAAGT+AGG | - | chr4_4:11114365-11114384 | Msa0669430:CDS | 25.0% |
| !!! | GGAATAACTCTATTTTTGTT+AGG | + | chr4_4:11114567-11114586 | None:intergenic | 25.0% |
| ! | AAAAGAGTTGAATTCAATGA+AGG | - | chr4_4:11114755-11114774 | Msa0669430:CDS | 25.0% |
| ! | GAATTCAATGAAGGAAATTA+TGG | - | chr4_4:11114764-11114783 | Msa0669430:CDS | 25.0% |
| !! | TTTGAGATATAAAGTAAACG+AGG | - | chr4_4:11114824-11114843 | Msa0669430:CDS | 25.0% |
| ! | CAGTAGAAATCATTATGATT+TGG | - | chr4_4:11114888-11114907 | Msa0669430:CDS | 25.0% |
| ! | TATGTAATCCATATAGTTTG+CGG | - | chr4_4:11114992-11115011 | Msa0669430:CDS | 25.0% |
| ! | TAATAAACCAAAAACCTGAA+GGG | + | chr4_4:11115151-11115170 | None:intergenic | 25.0% |
| ! | ATAATAAACCAAAAACCTGA+AGG | + | chr4_4:11115152-11115171 | None:intergenic | 25.0% |
| !! | GTTTTATACTTGATAGACAA+AGG | - | chr4_4:11115951-11115970 | Msa0669430:intron | 25.0% |
| ! | TTCACTTGATACTTTATATC+CGG | - | chr4_4:11115994-11116013 | Msa0669430:intron | 25.0% |
| AAAAAAAGATGAGTTGCCAT+AGG | - | chr4_4:11111487-11111506 | Msa0669430:exon | 30.0% | |
| TACATAGTTAGAAGAACCTA+TGG | + | chr4_4:11111506-11111525 | None:intergenic | 30.0% | |
| ! | AAGATCATGCATTGATGTAA+TGG | - | chr4_4:11111749-11111768 | Msa0669430:intron | 30.0% |
| CTGAAAGTGATTGTTTCAAT+GGG | - | chr4_4:11112231-11112250 | Msa0669430:intron | 30.0% | |
| CTGAAAATGATTGTTTCGAT+GGG | - | chr4_4:11112411-11112430 | Msa0669430:intron | 30.0% | |
| ! | TTTTCATATTCCACTACAGA+CGG | - | chr4_4:11113069-11113088 | Msa0669430:intron | 30.0% |
| CAAAAATATCAGAGTTATCG+AGG | + | chr4_4:11113186-11113205 | None:intergenic | 30.0% | |
| ! | AAATCATGATTAGCCACTTT+AGG | + | chr4_4:11113505-11113524 | None:intergenic | 30.0% |
| TAAAGTGGCTAATCATGATT+TGG | - | chr4_4:11113504-11113523 | Msa0669430:intron | 30.0% | |
| AGTAAAGATGAATCTACAGA+TGG | - | chr4_4:11113562-11113581 | Msa0669430:CDS | 30.0% | |
| GTAAAGATGAATCTACAGAT+GGG | - | chr4_4:11113563-11113582 | Msa0669430:CDS | 30.0% | |
| TAAAGATGAATCTACAGATG+GGG | - | chr4_4:11113564-11113583 | Msa0669430:CDS | 30.0% | |
| AGATAATATCTTCACCTTTC+TGG | + | chr4_4:11113815-11113834 | None:intergenic | 30.0% | |
| !! | TCATTAGTTCGTTTTTCTTC+AGG | - | chr4_4:11113872-11113891 | Msa0669430:CDS | 30.0% |
| GTTTCTATGACTGATATCAA+CGG | + | chr4_4:11113943-11113962 | None:intergenic | 30.0% | |
| ATAGTTCAAAAAAATGTGGG+AGG | + | chr4_4:11114034-11114053 | None:intergenic | 30.0% | |
| ATGAATTACCTAGAACATCA+AGG | + | chr4_4:11114357-11114376 | None:intergenic | 30.0% | |
| ! | ACTGCACTATTACTCTAAAA+TGG | + | chr4_4:11114921-11114940 | None:intergenic | 30.0% |
| GTATATACTACCAACTACTA+AGG | + | chr4_4:11114946-11114965 | None:intergenic | 30.0% | |
| GGGCATTAAAATGTAAACAA+AGG | + | chr4_4:11115127-11115146 | None:intergenic | 30.0% | |
| !!! | ATTCTTGATCACTGATTTTC+AGG | - | chr4_4:11115341-11115360 | Msa0669430:CDS | 30.0% |
| CAACCGTTTCTGTAAAATAA+TGG | - | chr4_4:11115440-11115459 | Msa0669430:CDS | 30.0% | |
| ! | TTAGTTGTCTGTTTCTTGTT+TGG | - | chr4_4:11115648-11115667 | Msa0669430:CDS | 30.0% |
| AGAGACGTAAAATCTTGCTT+TGG | - | chr4_4:11111287-11111306 | Msa0669430:three_prime_UTR | 35.0% | |
| ! | AAAGTGCTTTGTACATTTGC+TGG | - | chr4_4:11111370-11111389 | Msa0669430:three_prime_UTR | 35.0% |
| AAGTGCTTTGTACATTTGCT+GGG | - | chr4_4:11111371-11111390 | Msa0669430:three_prime_UTR | 35.0% | |
| !! | AGCAGATTTAGTTCTAGAAC+AGG | - | chr4_4:11111448-11111467 | Msa0669430:three_prime_UTR | 35.0% |
| !! | AGATTTAGTTCTAGAACAGG+AGG | - | chr4_4:11111451-11111470 | Msa0669430:three_prime_UTR | 35.0% |
| ACATGAGAATTTCAAACCAC+TGG | + | chr4_4:11111545-11111564 | None:intergenic | 35.0% | |
| GAAATTCTCATGTCAAACCT+AGG | - | chr4_4:11111552-11111571 | Msa0669430:CDS | 35.0% | |
| !! | TTTCAAAGGTGGGTTTGTTA+CGG | - | chr4_4:11111614-11111633 | Msa0669430:CDS | 35.0% |
| AAGTCCTTAATGTATCTCGT+GGG | - | chr4_4:11111637-11111656 | Msa0669430:CDS | 35.0% | |
| ! | ATCATGCATTGATGTAATGG+AGG | - | chr4_4:11111752-11111771 | Msa0669430:intron | 35.0% |
| TGAAAACTGAACCTGATGTT+TGG | - | chr4_4:11111784-11111803 | Msa0669430:intron | 35.0% | |
| GAAAACTGAACCTGATGTTT+GGG | - | chr4_4:11111785-11111804 | Msa0669430:intron | 35.0% | |
| TGTTCAGACAATCCATAACA+TGG | - | chr4_4:11111827-11111846 | Msa0669430:intron | 35.0% | |
| AATCCATAACATGGATGATG+AGG | - | chr4_4:11111836-11111855 | Msa0669430:intron | 35.0% | |
| TTAAAGATAGCTGCAAAGCA+AGG | - | chr4_4:11111901-11111920 | Msa0669430:intron | 35.0% | |
| AGAAGATGATCCTGATTTCA+TGG | - | chr4_4:11112019-11112038 | Msa0669430:intron | 35.0% | |
| CAATCAGAAGAGATACTAGA+CGG | - | chr4_4:11112146-11112165 | Msa0669430:intron | 35.0% | |
| CCATTGAAACAATCACTTTC+AGG | + | chr4_4:11112233-11112252 | None:intergenic | 35.0% | |
| CCTGAAAGTGATTGTTTCAA+TGG | - | chr4_4:11112230-11112249 | Msa0669430:intron | 35.0% | |
| GTCTTCTTTACTTTCTCTAC+CGG | + | chr4_4:11112270-11112289 | None:intergenic | 35.0% | |
| CATCTAGTATCTCTTCTGAT+TGG | + | chr4_4:11112328-11112347 | None:intergenic | 35.0% | |
| CAATCAGAAGAGATACTAGA+TGG | - | chr4_4:11112146-11112165 | Msa0669430:intron | 35.0% | |
| ! | CCATCGAAACAATCATTTTC+AGG | + | chr4_4:11112413-11112432 | None:intergenic | 35.0% |
| CCTGAAAATGATTGTTTCGA+TGG | - | chr4_4:11112410-11112429 | Msa0669430:intron | 35.0% | |
| CAATCAGAAGAGATACTAGA+CGG | - | chr4_4:11112146-11112165 | Msa0669430:intron | 35.0% | |
| CTGAAAATGATTGTTCCGAT+GGG | - | chr4_4:11112591-11112610 | Msa0669430:CDS | 35.0% | |
| GTCTTCTTTACTTTCTCTAC+CGG | + | chr4_4:11112270-11112289 | None:intergenic | 35.0% | |
| CAATCAGAAGAGATACTAGA+CGG | - | chr4_4:11112146-11112165 | Msa0669430:intron | 35.0% | |
| CTGAAAATGATTGTTCCGAT+GGG | - | chr4_4:11112591-11112610 | Msa0669430:CDS | 35.0% | |
| GTCTTCTTTACTTTCTCTAC+TGG | + | chr4_4:11112270-11112289 | None:intergenic | 35.0% | |
| GAATCTGAAGAGATACTAGA+CGG | - | chr4_4:11112866-11112885 | Msa0669430:CDS | 35.0% | |
| ! | ACACAGAAATAACTCTAGAG+TGG | - | chr4_4:11113008-11113027 | Msa0669430:intron | 35.0% |
| AGGTCTTCAAATTCAATTGC+AGG | + | chr4_4:11113166-11113185 | None:intergenic | 35.0% | |
| GATAAAGATCTTGACTCTGT+AGG | - | chr4_4:11113262-11113281 | Msa0669430:intron | 35.0% | |
| AGTGAAGATGAATATACAGC+TGG | - | chr4_4:11113325-11113344 | Msa0669430:intron | 35.0% | |
| ! | TTTCCTTATATGATGGTGAG+AGG | - | chr4_4:11113698-11113717 | Msa0669430:CDS | 35.0% |
| TATCCTCTCACCATCATATA+AGG | + | chr4_4:11113704-11113723 | None:intergenic | 35.0% | |
| TGAGAGGATACATGTTAAAG+AGG | - | chr4_4:11113714-11113733 | Msa0669430:CDS | 35.0% | |
| ACTTCTTGTGATGAACATGA+AGG | - | chr4_4:11113751-11113770 | Msa0669430:CDS | 35.0% | |
| AAGGTTATTGTCAACCAGAA+AGG | - | chr4_4:11113798-11113817 | Msa0669430:CDS | 35.0% | |
| TTTCGTCTATCTGGATTGTT+GGG | + | chr4_4:11114091-11114110 | None:intergenic | 35.0% | |
| ! | TTTTCGTCTATCTGGATTGT+TGG | + | chr4_4:11114092-11114111 | None:intergenic | 35.0% |
| AGTAATGCTTGAAATTGCCA+TGG | - | chr4_4:11114204-11114223 | Msa0669430:CDS | 35.0% | |
| TTCTCACTCAATAAAGTCCA+TGG | + | chr4_4:11114224-11114243 | None:intergenic | 35.0% | |
| TATGTATGCCTTGATGTTCT+AGG | - | chr4_4:11114346-11114365 | Msa0669430:CDS | 35.0% | |
| CATTAGTAAGTAGGCGAATT+AGG | - | chr4_4:11114374-11114393 | Msa0669430:CDS | 35.0% | |
| ! | ATAAGAATGGTGATGCAGAA+AGG | - | chr4_4:11114505-11114524 | Msa0669430:CDS | 35.0% |
| ! | ATTCCAAAGACTTCTAGAAG+TGG | - | chr4_4:11114582-11114601 | Msa0669430:CDS | 35.0% |
| ACGAGAAGAATTACGAATCT+TGG | + | chr4_4:11114628-11114647 | None:intergenic | 35.0% | |
| ATTCACTAAGAACAAGTCTG+TGG | + | chr4_4:11114857-11114876 | None:intergenic | 35.0% | |
| ATACTACTCCGCAAACTATA+TGG | + | chr4_4:11115003-11115022 | None:intergenic | 35.0% | |
| GCTTTAGTAAGTGACAGATA+GGG | + | chr4_4:11115178-11115197 | None:intergenic | 35.0% | |
| TGCTTTAGTAAGTGACAGAT+AGG | + | chr4_4:11115179-11115198 | None:intergenic | 35.0% | |
| ACAAGAAAGCTCTATGTATC+TGG | + | chr4_4:11115209-11115228 | None:intergenic | 35.0% | |
| AATGCTACAAAAGCTGAAGA+AGG | - | chr4_4:11115381-11115400 | Msa0669430:CDS | 35.0% | |
| ! | TCAATTCAAGAGTATGGTAG+AGG | + | chr4_4:11115475-11115494 | None:intergenic | 35.0% |
| AAGTTACTACCAGTGTCAAT+GGG | - | chr4_4:11115573-11115592 | Msa0669430:CDS | 35.0% | |
| ! | TGAATACTATCAGCTTTGTG+TGG | - | chr4_4:11115624-11115643 | Msa0669430:CDS | 35.0% |
| TTGCCAGAATCTAAGTGAAA+CGG | - | chr4_4:11115845-11115864 | Msa0669430:intron | 35.0% | |
| ATTCCGTTTCACTTAGATTC+TGG | + | chr4_4:11115851-11115870 | None:intergenic | 35.0% | |
| AAAATTTGATTCAACTCGGC+CGG | + | chr4_4:11116016-11116035 | None:intergenic | 35.0% | |
| GAAGTCCTTAATGTATCTCG+TGG | - | chr4_4:11111636-11111655 | Msa0669430:CDS | 40.0% | |
| ! | TGATGACGATGATGATGCAA+AGG | - | chr4_4:11111722-11111741 | Msa0669430:intron | 40.0% |
| ! | TGCATTGATGTAATGGAGGA+AGG | - | chr4_4:11111756-11111775 | Msa0669430:intron | 40.0% |
| CAACCTCATCATCCATGTTA+TGG | + | chr4_4:11111842-11111861 | None:intergenic | 40.0% | |
| CATAACATGGATGATGAGGT+TGG | - | chr4_4:11111840-11111859 | Msa0669430:intron | 40.0% | |
| ! | ATCTCTTCTGATTGGTCAAC+TGG | + | chr4_4:11112140-11112159 | None:intergenic | 40.0% |
| CGTCTAGTATCTCTTCTGAT+TGG | + | chr4_4:11112148-11112167 | None:intergenic | 40.0% | |
| GTCTTCTTTACTTTCTCGAC+CGG | + | chr4_4:11112450-11112469 | None:intergenic | 40.0% | |
| CGTCTAGTATCTCTTCTGAT+TGG | + | chr4_4:11112148-11112167 | None:intergenic | 40.0% | |
| ! | CCATCGGAACAATCATTTTC+AGG | + | chr4_4:11112593-11112612 | None:intergenic | 40.0% |
| CCTGAAAATGATTGTTCCGA+TGG | - | chr4_4:11112590-11112609 | Msa0669430:CDS | 40.0% | |
| CAATCTCTTGGGAAGACATT+GGG | + | chr4_4:11112655-11112674 | None:intergenic | 40.0% | |
| CGTCTAGTATCTCTTCTGAT+TGG | + | chr4_4:11112148-11112167 | None:intergenic | 40.0% | |
| ! | CCATCGGAACAATCATTTTC+AGG | + | chr4_4:11112593-11112612 | None:intergenic | 40.0% |
| CCTGAAAATGATTGTTCCGA+TGG | - | chr4_4:11112590-11112609 | Msa0669430:CDS | 40.0% | |
| GTCAACTAGCACAATCTCTT+GGG | + | chr4_4:11112846-11112865 | None:intergenic | 40.0% | |
| TCTTTATCACTAGCCACTTC+AGG | + | chr4_4:11113250-11113269 | None:intergenic | 40.0% | |
| ATTGAGTCCATGTTCGTTAG+TGG | + | chr4_4:11113377-11113396 | None:intergenic | 40.0% | |
| AACATGGACTCAATCCTGAT+GGG | - | chr4_4:11113383-11113402 | Msa0669430:intron | 40.0% | |
| AGATGATTCACCTGAATACG+AGG | - | chr4_4:11113423-11113442 | Msa0669430:CDS | 40.0% | |
| AAGCAATCATTTGCTTCCGA+AGG | - | chr4_4:11113448-11113467 | Msa0669430:CDS | 40.0% | |
| ACCAATGTCATCATCACCTT+CGG | + | chr4_4:11113467-11113486 | None:intergenic | 40.0% | |
| ! | TCATGATTAGCCACTTTAGG+TGG | + | chr4_4:11113502-11113521 | None:intergenic | 40.0% |
| CTGGTTGACAATAACCTTTC+AGG | + | chr4_4:11113796-11113815 | None:intergenic | 40.0% | |
| TTCCTGAGAAGATGGTGAAA+TGG | + | chr4_4:11113898-11113917 | None:intergenic | 40.0% | |
| ATCCATAGATTGAGGTATGC+AGG | + | chr4_4:11114318-11114337 | None:intergenic | 40.0% | |
| GCATCACCATTCTTATCAGT+CGG | + | chr4_4:11114501-11114520 | None:intergenic | 40.0% | |
| ! | GAACCACTTCTAGAAGTCTT+TGG | + | chr4_4:11114588-11114607 | None:intergenic | 40.0% |
| TAGAAGTGGTTCCAATCTTC+AGG | - | chr4_4:11114596-11114615 | Msa0669430:CDS | 40.0% | |
| AGAAGTGGTTCCAATCTTCA+GGG | - | chr4_4:11114597-11114616 | Msa0669430:CDS | 40.0% | |
| AGTGCAGTTTCCTTAGTAGT+TGG | - | chr4_4:11114933-11114952 | Msa0669430:CDS | 40.0% | |
| AAACCAAAAACCTGAAGGGA+GGG | + | chr4_4:11115147-11115166 | None:intergenic | 40.0% | |
| TAAACCAAAAACCTGAAGGG+AGG | + | chr4_4:11115148-11115167 | None:intergenic | 40.0% | |
| !!! | CACTGATTTTCAGGCAAGAA+TGG | - | chr4_4:11115350-11115369 | Msa0669430:CDS | 40.0% |
| ! | AAGCTGAAGAAGGTGCAAAA+CGG | - | chr4_4:11115391-11115410 | Msa0669430:CDS | 40.0% |
| TGCGCTTCAATTCAAGAGTA+TGG | + | chr4_4:11115481-11115500 | None:intergenic | 40.0% | |
| !! | TGTTGGTGTTGTGTTAGTGT+CGG | + | chr4_4:11115534-11115553 | None:intergenic | 40.0% |
| TAACACAACACCAACACATG+CGG | - | chr4_4:11115538-11115557 | Msa0669430:CDS | 40.0% | |
| TTAAATGCAACCGCATGTGT+TGG | + | chr4_4:11115551-11115570 | None:intergenic | 40.0% | |
| CAAGTTACTACCAGTGTCAA+TGG | - | chr4_4:11115572-11115591 | Msa0669430:CDS | 40.0% | |
| AGTTACTACCAGTGTCAATG+GGG | - | chr4_4:11115574-11115593 | Msa0669430:CDS | 40.0% | |
| CACAAGATGTAGTGCGTAAA+GGG | - | chr4_4:11115747-11115766 | Msa0669430:CDS | 40.0% | |
| TAGGTTCTATGAGGATGATG+AGG | - | chr4_4:11115817-11115836 | Msa0669430:intron | 40.0% | |
| AGGTTCTATGAGGATGATGA+GGG | - | chr4_4:11115818-11115837 | Msa0669430:intron | 40.0% | |
| TTTGCTGGGTCAGACACTTA+AGG | - | chr4_4:11111385-11111404 | Msa0669430:three_prime_UTR | 45.0% | |
| GATGACTACAACGCTCCATT+CGG | + | chr4_4:11111578-11111597 | None:intergenic | 45.0% | |
| TCCTTAATGTATCTCGTGGG+CGG | - | chr4_4:11111640-11111659 | Msa0669430:CDS | 45.0% | |
| TCATCACATGCCCAAACATC+AGG | + | chr4_4:11111798-11111817 | None:intergenic | 45.0% | |
| ! | GTTTGGGCATGTGATGATGA+TGG | - | chr4_4:11111801-11111820 | Msa0669430:intron | 45.0% |
| AACATGGATGATGAGGTTGG+TGG | - | chr4_4:11111843-11111862 | Msa0669430:intron | 45.0% | |
| AGGAAGAGAAAACGCTCACA+AGG | - | chr4_4:11111921-11111940 | Msa0669430:intron | 45.0% | |
| ! | CTTTTCCATGTGGTCTTCTG+GGG | + | chr4_4:11111991-11112010 | None:intergenic | 45.0% |
| ! | GCTTTTCCATGTGGTCTTCT+GGG | + | chr4_4:11111992-11112011 | None:intergenic | 45.0% |
| ! | TGCTTTTCCATGTGGTCTTC+TGG | + | chr4_4:11111993-11112012 | None:intergenic | 45.0% |
| !!! | CTGTTTGCTGCTTTTCCATG+TGG | + | chr4_4:11112001-11112020 | None:intergenic | 45.0% |
| CTGAGAGTCTCCATGAAATC+AGG | + | chr4_4:11112032-11112051 | None:intergenic | 45.0% | |
| ! | GACCAAGAAGAAGTGCATGA+AGG | - | chr4_4:11112085-11112104 | Msa0669430:intron | 45.0% |
| GTCCTTCATGCACTTCTTCT+TGG | + | chr4_4:11112090-11112109 | None:intergenic | 45.0% | |
| AATGGGCAAGATGACTGTTC+CGG | - | chr4_4:11112248-11112267 | Msa0669430:intron | 45.0% | |
| CAAGAGTTCTTACCCTCTAG+TGG | - | chr4_4:11112350-11112369 | Msa0669430:intron | 45.0% | |
| ! | CAATCTCTGGGGAAGACATT+GGG | + | chr4_4:11112475-11112494 | None:intergenic | 45.0% |
| ! | ACAATCTCTGGGGAAGACAT+TGG | + | chr4_4:11112476-11112495 | None:intergenic | 45.0% |
| GTCAACTAGCACAATCTCTG+GGG | + | chr4_4:11112486-11112505 | None:intergenic | 45.0% | |
| GGTCAACTAGCACAATCTCT+GGG | + | chr4_4:11112487-11112506 | None:intergenic | 45.0% | |
| TGGTCAACTAGCACAATCTC+TGG | + | chr4_4:11112488-11112507 | None:intergenic | 45.0% | |
| GCAATCTCTTGGGAAGACAT+TGG | + | chr4_4:11112656-11112675 | None:intergenic | 45.0% | |
| GTCAACTAGCGCAATCTCTT+GGG | + | chr4_4:11112666-11112685 | None:intergenic | 45.0% | |
| TCTCTACTGGAACAGTCATC+TGG | + | chr4_4:11112797-11112816 | None:intergenic | 45.0% | |
| CAATCTCTTGGGAGGACATT+GGG | + | chr4_4:11112835-11112854 | None:intergenic | 45.0% | |
| ACAATCTCTTGGGAGGACAT+TGG | + | chr4_4:11112836-11112855 | None:intergenic | 45.0% | |
| AACTAGCACAATCTCTTGGG+AGG | + | chr4_4:11112843-11112862 | None:intergenic | 45.0% | |
| CGTCAACTAGCACAATCTCT+TGG | + | chr4_4:11112847-11112866 | None:intergenic | 45.0% | |
| AATGAGCCAGATGACTGTTC+TGG | - | chr4_4:11112968-11112987 | Msa0669430:intron | 45.0% | |
| TCTCTACCAGAACAGTCATC+TGG | + | chr4_4:11112977-11112996 | None:intergenic | 45.0% | |
| TTATCACTAGCCACTTCAGG+TGG | + | chr4_4:11113247-11113266 | None:intergenic | 45.0% | |
| AGATCTTGACTCTGTAGGTC+TGG | - | chr4_4:11113267-11113286 | Msa0669430:intron | 45.0% | |
| GAACATGGACTCAATCCTGA+TGG | - | chr4_4:11113382-11113401 | Msa0669430:intron | 45.0% | |
| ! | ACTCAATCCTGATGGGTATC+TGG | - | chr4_4:11113390-11113409 | Msa0669430:intron | 45.0% |
| GATTGCTTCTCCTCGTATTC+AGG | + | chr4_4:11113436-11113455 | None:intergenic | 45.0% | |
| ! | TCCGAAGGTGATGATGACAT+TGG | - | chr4_4:11113463-11113482 | Msa0669430:intron | 45.0% |
| ! | ACTAGTCTCACCACCTAAAG+TGG | - | chr4_4:11113489-11113508 | Msa0669430:intron | 45.0% |
| !! | ATTGAGGCCTTGTTCAGTAG+TGG | + | chr4_4:11113614-11113633 | None:intergenic | 45.0% |
| TACTGAACAAGGCCTCAATC+CGG | - | chr4_4:11113615-11113634 | Msa0669430:CDS | 45.0% | |
| GAAGGTAGTTCAAAGCTGCA+TGG | - | chr4_4:11113769-11113788 | Msa0669430:CDS | 45.0% | |
| ! | CAGAGCTTTTCCTGAGAAGA+TGG | + | chr4_4:11113906-11113925 | None:intergenic | 45.0% |
| ACTGATATCAACGGTCTCCA+TGG | + | chr4_4:11113934-11113953 | None:intergenic | 45.0% | |
| TGTGGGAGGATTCTATAACG+TGG | + | chr4_4:11114020-11114039 | None:intergenic | 45.0% | |
| CTATGACTACAACAGCAGCA+AGG | + | chr4_4:11114186-11114205 | None:intergenic | 45.0% | |
| CTCCTGCATACCTCAATCTA+TGG | - | chr4_4:11114313-11114332 | Msa0669430:CDS | 45.0% | |
| ACAGAGCCGACTGATAAGAA+TGG | - | chr4_4:11114492-11114511 | Msa0669430:CDS | 45.0% | |
| TTCTCGTTCAGCAACTCATC+TGG | - | chr4_4:11114641-11114660 | Msa0669430:CDS | 45.0% | |
| TCTCGTTCAGCAACTCATCT+GGG | - | chr4_4:11114642-11114661 | Msa0669430:CDS | 45.0% | |
| !! | CATTTTAATGCCCTCCCTTC+AGG | - | chr4_4:11115134-11115153 | Msa0669430:CDS | 45.0% |
| GTGGCTGTCTTTCATGTCAA+GGG | - | chr4_4:11115413-11115432 | Msa0669430:CDS | 45.0% | |
| GACAAAAACCCCATTGACAC+TGG | + | chr4_4:11115585-11115604 | None:intergenic | 45.0% | |
| TGGAGGTGAAGAACTACTGT+CGG | + | chr4_4:11115708-11115727 | None:intergenic | 45.0% | |
| ! | GGTGAGACTACATTTTGTGG+AGG | + | chr4_4:11115725-11115744 | None:intergenic | 45.0% |
| ! | GGAGGTGAGACTACATTTTG+TGG | + | chr4_4:11115728-11115747 | None:intergenic | 45.0% |
| TTACGCACTACATCTTGTGG+AGG | + | chr4_4:11115746-11115765 | None:intergenic | 45.0% | |
| CCTTTACGCACTACATCTTG+TGG | + | chr4_4:11115749-11115768 | None:intergenic | 45.0% | |
| CCACAAGATGTAGTGCGTAA+AGG | - | chr4_4:11115746-11115765 | Msa0669430:CDS | 45.0% | |
| ATAGCATTCGCTGATGAAGC+AGG | - | chr4_4:11115776-11115795 | Msa0669430:CDS | 45.0% | |
| CATCCTCATAGAACCTAACC+TGG | + | chr4_4:11115814-11115833 | None:intergenic | 45.0% | |
| CATGTCAAACCTAGGCCGAA+TGG | - | chr4_4:11111560-11111579 | Msa0669430:CDS | 50.0% | |
| ! | ATGTGGTCTTCTGGGGATGA+TGG | + | chr4_4:11111984-11112003 | None:intergenic | 50.0% |
| ATCATCCCCAGAAGACCACA+TGG | - | chr4_4:11111983-11112002 | Msa0669430:intron | 50.0% | |
| ! | CAATCTCTGGGGAGGACATT+GGG | + | chr4_4:11112115-11112134 | None:intergenic | 50.0% |
| ! | ACAATCTCTGGGGAGGACAT+TGG | + | chr4_4:11112116-11112135 | None:intergenic | 50.0% |
| GTCAACTGGCACAATCTCTG+GGG | + | chr4_4:11112126-11112145 | None:intergenic | 50.0% | |
| GGTCAACTGGCACAATCTCT+GGG | + | chr4_4:11112127-11112146 | None:intergenic | 50.0% | |
| TGGTCAACTGGCACAATCTC+TGG | + | chr4_4:11112128-11112147 | None:intergenic | 50.0% | |
| CAAGAGTTCTCACCCTCTAG+TGG | - | chr4_4:11112170-11112189 | Msa0669430:intron | 50.0% | |
| CCAGCTGAATCTCCACTAGA+GGG | + | chr4_4:11112185-11112204 | None:intergenic | 50.0% | |
| CAGCCTCTTGGGAAGACATT+GGG | + | chr4_4:11112295-11112314 | None:intergenic | 50.0% | |
| ACAGCCTCTTGGGAAGACAT+TGG | + | chr4_4:11112296-11112315 | None:intergenic | 50.0% | |
| GTGAACTAGCACAGCCTCTT+GGG | + | chr4_4:11112306-11112325 | None:intergenic | 50.0% | |
| GCAGCTGAATCACCACTAGA+GGG | + | chr4_4:11112365-11112384 | None:intergenic | 50.0% | |
| TCTCTACCGGAACAGTCATC+TGG | + | chr4_4:11112257-11112276 | None:intergenic | 50.0% | |
| TCTCTTGGGAAGACATTGGG+TGG | + | chr4_4:11112652-11112671 | None:intergenic | 50.0% | |
| GGTCAACTAGCGCAATCTCT+TGG | + | chr4_4:11112667-11112686 | None:intergenic | 50.0% | |
| GCAGCTGAATCTCCACTAGT+GGG | + | chr4_4:11112725-11112744 | None:intergenic | 50.0% | |
| AGCAGCTGAATCTCCACTAG+TGG | + | chr4_4:11112726-11112745 | None:intergenic | 50.0% | |
| GACGGTGAAGCCATCTGATA+TGG | - | chr4_4:11113087-11113106 | Msa0669430:intron | 50.0% | |
| TTGCAGGAAAGCTTGCAGAC+TGG | + | chr4_4:11113150-11113169 | None:intergenic | 50.0% | |
| CGACAAACCAGATACCCATC+AGG | + | chr4_4:11113400-11113419 | None:intergenic | 50.0% | |
| TGAATCTACAGATGGGGCTG+AGG | - | chr4_4:11113570-11113589 | Msa0669430:CDS | 50.0% | |
| CTCTGCTCCACTACTGAACA+AGG | - | chr4_4:11113604-11113623 | Msa0669430:CDS | 50.0% | |
| GAATCGTCAGAGAGACGAAC+CGG | + | chr4_4:11113649-11113668 | None:intergenic | 50.0% | |
| GATTGCTTCGCGTCGTATTC+AGG | + | chr4_4:11113673-11113692 | None:intergenic | 50.0% | |
| CAAAGCTGCATGGTCCTGAA+AGG | - | chr4_4:11113779-11113798 | Msa0669430:CDS | 50.0% | |
| GGCCATTTCACCATCTTCTC+AGG | - | chr4_4:11113893-11113912 | Msa0669430:CDS | 50.0% | |
| GGAAAAGCTCTGCAAAGCCA+TGG | - | chr4_4:11113914-11113933 | Msa0669430:CDS | 50.0% | |
| ! | AATGGTGATGCAGAAAGGCC+CGG | - | chr4_4:11114510-11114529 | Msa0669430:CDS | 50.0% |
| TGCAGTTCTCGAGACAACAC+CGG | + | chr4_4:11114532-11114551 | None:intergenic | 50.0% | |
| CTCGTTCAGCAACTCATCTG+GGG | - | chr4_4:11114643-11114662 | Msa0669430:CDS | 50.0% | |
| !! | ATGCCCTCCCTTCAGGTTTT+TGG | - | chr4_4:11115141-11115160 | Msa0669430:CDS | 50.0% |
| ! | CTGAAGAAGGTGCAAAACGG+TGG | - | chr4_4:11115394-11115413 | Msa0669430:CDS | 50.0% |
| GGTGGCTGTCTTTCATGTCA+AGG | - | chr4_4:11115412-11115431 | Msa0669430:CDS | 50.0% | |
| GTGCCAGGTTAGGTTCTATG+AGG | - | chr4_4:11115808-11115827 | Msa0669430:intron | 50.0% | |
| TACAACGCTCCATTCGGCCT+AGG | + | chr4_4:11111572-11111591 | None:intergenic | 55.0% | |
| GCCGCCCACGAGATACATTA+AGG | + | chr4_4:11111644-11111663 | None:intergenic | 55.0% | |
| ! | AACTGGCACAATCTCTGGGG+AGG | + | chr4_4:11112123-11112142 | None:intergenic | 55.0% |
| CCCTCTAGTGGAGATTCAGC+TGG | - | chr4_4:11112182-11112201 | Msa0669430:intron | 55.0% | |
| GCCAGCTGAATCTCCACTAG+AGG | + | chr4_4:11112186-11112205 | None:intergenic | 55.0% | |
| CCTCTTGGGAAGACATTGGG+TGG | + | chr4_4:11112292-11112311 | None:intergenic | 55.0% | |
| CCACCCAATGTCTTCCCAAG+AGG | - | chr4_4:11112289-11112308 | Msa0669430:intron | 55.0% | |
| GGTGAACTAGCACAGCCTCT+TGG | + | chr4_4:11112307-11112326 | None:intergenic | 55.0% | |
| CGCAGCTGAATCACCACTAG+AGG | + | chr4_4:11112366-11112385 | None:intergenic | 55.0% | |
| GATGGGCCAGATGACTGTTC+CGG | - | chr4_4:11112428-11112447 | Msa0669430:intron | 55.0% | |
| TCTCGACCGGAACAGTCATC+TGG | + | chr4_4:11112437-11112456 | None:intergenic | 55.0% | |
| ! | TCTCTGGGGAAGACATTGGG+TGG | + | chr4_4:11112472-11112491 | None:intergenic | 55.0% |
| GCAGCTGAATCTCCACCAGA+GGG | + | chr4_4:11112545-11112564 | None:intergenic | 55.0% | |
| AGCAGCTGAATCTCCACCAG+AGG | + | chr4_4:11112546-11112565 | None:intergenic | 55.0% | |
| GGAACAGTCATCTGGCCCAT+CGG | + | chr4_4:11112429-11112448 | None:intergenic | 55.0% | |
| GATGGGCCAGATGACTGTTC+CGG | - | chr4_4:11112428-11112447 | Msa0669430:intron | 55.0% | |
| CAAGAGTTCTCGCCCACTAG+TGG | - | chr4_4:11112710-11112729 | Msa0669430:CDS | 55.0% | |
| GGAACAGTCATCTGGCCCAT+CGG | + | chr4_4:11112429-11112448 | None:intergenic | 55.0% | |
| TCTCTTGGGAGGACATTGGG+TGG | + | chr4_4:11112832-11112851 | None:intergenic | 55.0% | |
| ATGAGTTCCCACCGTCTAGC+AGG | - | chr4_4:11112891-11112910 | Msa0669430:intron | 55.0% | |
| TGAGTTCCCACCGTCTAGCA+GGG | - | chr4_4:11112892-11112911 | Msa0669430:intron | 55.0% | |
| CTGAATCCCTGCTAGACGGT+GGG | + | chr4_4:11112901-11112920 | None:intergenic | 55.0% | |
| GCAGCTGAATCCCTGCTAGA+CGG | + | chr4_4:11112905-11112924 | None:intergenic | 55.0% | |
| GATGGCTTCACCGTCTGTAG+TGG | + | chr4_4:11113082-11113101 | None:intergenic | 55.0% | |
| ACCAGTCTCACCACCTGAAG+TGG | - | chr4_4:11113234-11113253 | Msa0669430:intron | 55.0% | |
| TCCTGCGCCACTAACGAACA+TGG | - | chr4_4:11113367-11113386 | Msa0669430:intron | 55.0% | |
| TCCATGTTCGTTAGTGGCGC+AGG | + | chr4_4:11113371-11113390 | None:intergenic | 55.0% | |
| TACAGATGGGGCTGAGGTTC+AGG | - | chr4_4:11113576-11113595 | Msa0669430:CDS | 55.0% | |
| GAACAAGGCCTCAATCCGGA+TGG | - | chr4_4:11113619-11113638 | Msa0669430:CDS | 55.0% | |
| CCTCAATCCGGATGGATGTC+CGG | - | chr4_4:11113627-11113646 | Msa0669430:CDS | 55.0% | |
| AGACGAACCGGACATCCATC+CGG | + | chr4_4:11113637-11113656 | None:intergenic | 55.0% | |
| GCAGTTCTCGAGACAACACC+GGG | + | chr4_4:11114531-11114550 | None:intergenic | 55.0% | |
| !! | CTTGGAAGCGCCCTGAAGAT+TGG | + | chr4_4:11114610-11114629 | None:intergenic | 55.0% |
| GCATTCGCTGATGAAGCAGG+TGG | - | chr4_4:11115779-11115798 | Msa0669430:CDS | 55.0% | |
| GTGGAAAGCTGTGCCAGGTT+AGG | - | chr4_4:11115798-11115817 | Msa0669430:CDS | 55.0% | |
| ! | TCTCTGGGGAGGACATTGGG+TGG | + | chr4_4:11112112-11112131 | None:intergenic | 60.0% |
| CACCAGAGGGCGAGAACTCT+TGG | + | chr4_4:11112532-11112551 | None:intergenic | 60.0% | |
| CAAGAGTTCTCGCCCTCTGG+TGG | - | chr4_4:11112530-11112549 | Msa0669430:CDS | 60.0% | |
| GCTGAATCCCTGCTAGACGG+TGG | + | chr4_4:11112902-11112921 | None:intergenic | 60.0% | |
| GCCACTTCAGGTGGTGAGAC+TGG | + | chr4_4:11113238-11113257 | None:intergenic | 60.0% | |
| CCGGACATCCATCCGGATTG+AGG | + | chr4_4:11113630-11113649 | None:intergenic | 60.0% | |
| AGCAGGTGGAAAGCTGTGCC+AGG | - | chr4_4:11115793-11115812 | Msa0669430:CDS | 60.0% | |
| GGCCAAGAGTTCTCGCCCTC+TGG | - | chr4_4:11112527-11112546 | Msa0669430:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 11111265 | 11116101 | 11111265 | ID=Msa0669430;Name=Msa0669430 |
| chr4_4 | mRNA | 11111265 | 11116101 | 11111265 | ID=Msa0669430-mRNA-1;Parent=Msa0669430;Name=Msa0669430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.6|0.66|0.83|1|1|6|239|978 |
| chr4_4 | exon | 11111265 | 11111668 | 11111265 | ID=Msa0669430-mRNA-1:exon:3354;Parent=Msa0669430-mRNA-1 |
| chr4_4 | exon | 11112521 | 11112897 | 11112521 | ID=Msa0669430-mRNA-1:exon:3353;Parent=Msa0669430-mRNA-1 |
| chr4_4 | exon | 11113397 | 11113472 | 11113397 | ID=Msa0669430-mRNA-1:exon:3352;Parent=Msa0669430-mRNA-1 |
| chr4_4 | exon | 11113547 | 11115820 | 11113547 | ID=Msa0669430-mRNA-1:exon:3351;Parent=Msa0669430-mRNA-1 |
| chr4_4 | exon | 11115960 | 11116001 | 11115960 | ID=Msa0669430-mRNA-1:exon:3350;Parent=Msa0669430-mRNA-1 |
| chr4_4 | exon | 11116099 | 11116101 | 11116099 | ID=Msa0669430-mRNA-1:exon:3349;Parent=Msa0669430-mRNA-1 |
| chr4_4 | CDS | 11116099 | 11116101 | 11116099 | ID=Msa0669430-mRNA-1:cds;Parent=Msa0669430-mRNA-1 |
| chr4_4 | CDS | 11115960 | 11116001 | 11115960 | ID=Msa0669430-mRNA-1:cds;Parent=Msa0669430-mRNA-1 |
| chr4_4 | CDS | 11113547 | 11115820 | 11113547 | ID=Msa0669430-mRNA-1:cds;Parent=Msa0669430-mRNA-1 |
| chr4_4 | CDS | 11113397 | 11113472 | 11113397 | ID=Msa0669430-mRNA-1:cds;Parent=Msa0669430-mRNA-1 |
| chr4_4 | CDS | 11112521 | 11112897 | 11112521 | ID=Msa0669430-mRNA-1:cds;Parent=Msa0669430-mRNA-1 |
| chr4_4 | CDS | 11111504 | 11111668 | 11111504 | ID=Msa0669430-mRNA-1:cds;Parent=Msa0669430-mRNA-1 |
| chr4_4 | three_prime_UTR | 11111265 | 11111503 | 11111265 | ID=Msa0669430-mRNA-1:three_prime_utr;Parent=Msa0669430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
