Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685380 | XP_013456308.1 | 98.792 | 331 | 4 | 0 | 1 | 331 | 1 | 331 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685380 | sp|Q42896|SCRK2_SOLLC | 85.938 | 320 | 45 | 0 | 10 | 329 | 6 | 325 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685380 | A0A072UKS2 | 98.792 | 331 | 4 | 0 | 1 | 331 | 1 | 331 | 0.0 | 660 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0685380 | 0.816603 | 5.079139e-52 | -8.615850e-47 |
| Msa0003470 | Msa0685380 | -0.800935 | 1.141253e-48 | -8.615850e-47 |
| Msa0609970 | Msa0685380 | -0.815238 | 1.024306e-51 | -8.615850e-47 |
| Msa0685380 | Msa0758860 | -0.804225 | 2.392217e-49 | -8.615850e-47 |
| Msa0685380 | Msa0817260 | -0.801918 | 7.178431e-49 | -8.615850e-47 |
| Msa0685380 | Msa0824730 | -0.803312 | 3.702159e-49 | -8.615850e-47 |
| Msa0685380 | Msa0922540 | -0.800301 | 1.537179e-48 | -8.615850e-47 |
| Msa0685380 | Msa1002040 | -0.800554 | 1.365166e-48 | -8.615850e-47 |
| Msa0685380 | Msa1179020 | 0.832462 | 9.323799e-56 | -8.615850e-47 |
| Msa0685380 | Msa1246530 | 0.838690 | 2.475588e-57 | -8.615850e-47 |
| Msa0685380 | Msa1398860 | -0.824871 | 6.380958e-54 | -8.615850e-47 |
| Msa0685380 | Msa1404720 | -0.803525 | 3.344640e-49 | -8.615850e-47 |
| Msa0685380 | Msa1442220 | 0.806715 | 7.190130e-50 | -8.615850e-47 |
| Msa0145950 | Msa0685380 | -0.801396 | 9.183091e-49 | -8.615850e-47 |
| Msa0212750 | Msa0685380 | 0.802406 | 5.695047e-49 | -8.615850e-47 |
| Msa0426810 | Msa0685380 | -0.824915 | 6.229956e-54 | -8.615850e-47 |
| Msa0469910 | Msa0685380 | 0.823030 | 1.724879e-53 | -8.615850e-47 |
| Msa0259330 | Msa0685380 | -0.808681 | 2.748335e-50 | -8.615850e-47 |
| Msa0275400 | Msa0685380 | 0.812812 | 3.511712e-51 | -8.615850e-47 |
| Msa0302460 | Msa0685380 | -0.812712 | 3.692330e-51 | -8.615850e-47 |
| Msa0302650 | Msa0685380 | -0.807414 | 5.115003e-50 | -8.615850e-47 |
| Msa0524200 | Msa0685380 | 0.805890 | 1.072902e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685380 | MtrunA17_Chr4g0033631 | 98.792 | 331 | 4 | 0 | 1 | 331 | 1 | 331 | 0.0 | 660 |
| Msa0685380 | MtrunA17_Chr2g0329451 | 89.752 | 322 | 33 | 0 | 8 | 329 | 7 | 328 | 0.0 | 593 |
| Msa0685380 | MtrunA17_Chr1g0188291 | 67.516 | 314 | 102 | 0 | 15 | 328 | 8 | 321 | 1.39e-157 | 444 |
| Msa0685380 | MtrunA17_Chr6g0474331 | 63.551 | 321 | 115 | 1 | 13 | 331 | 26 | 346 | 4.17e-150 | 426 |
| Msa0685380 | MtrunA17_Chr5g0434971 | 67.085 | 319 | 104 | 1 | 13 | 330 | 65 | 383 | 5.12e-149 | 424 |
| Msa0685380 | MtrunA17_Chr1g0204101 | 65.000 | 320 | 110 | 1 | 13 | 330 | 21 | 340 | 1.25e-148 | 421 |
| Msa0685380 | MtrunA17_Chr1g0183241 | 51.250 | 320 | 133 | 4 | 13 | 330 | 108 | 406 | 2.90e-100 | 301 |
| Msa0685380 | MtrunA17_Chr1g0183661 | 51.786 | 280 | 121 | 4 | 36 | 313 | 9 | 276 | 7.08e-94 | 281 |
| Msa0685380 | MtrunA17_Chr1g0171921 | 48.916 | 323 | 152 | 6 | 13 | 328 | 181 | 497 | 1.10e-93 | 288 |
| Msa0685380 | MtrunA17_Chr1g0177771 | 48.889 | 315 | 143 | 5 | 15 | 326 | 253 | 552 | 7.78e-92 | 284 |
| Msa0685380 | MtrunA17_Chr1g0177321 | 46.984 | 315 | 140 | 5 | 15 | 326 | 179 | 469 | 3.62e-85 | 265 |
| Msa0685380 | MtrunA17_Chr7g0246421 | 56.771 | 192 | 81 | 2 | 139 | 328 | 2 | 193 | 4.61e-69 | 214 |
| Msa0685380 | MtrunA17_Chr1g0176221 | 47.414 | 232 | 93 | 2 | 95 | 326 | 4 | 206 | 4.34e-63 | 199 |
| Msa0685380 | MtrunA17_Chr4g0008441 | 31.608 | 367 | 204 | 4 | 8 | 327 | 86 | 452 | 4.12e-51 | 176 |
| Msa0685380 | MtrunA17_Chr5g0419371 | 33.007 | 306 | 180 | 5 | 41 | 324 | 250 | 552 | 2.91e-50 | 176 |
| Msa0685380 | MtrunA17_Chr7g0246411 | 56.923 | 130 | 54 | 1 | 15 | 142 | 41 | 170 | 4.67e-45 | 152 |
| Msa0685380 | MtrunA17_Chr4g0020911 | 52.632 | 133 | 61 | 1 | 140 | 270 | 57 | 189 | 5.47e-40 | 139 |
| Msa0685380 | MtrunA17_Chr2g0314311 | 28.231 | 294 | 175 | 10 | 46 | 328 | 89 | 357 | 1.52e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685380 | AT3G59480.1 | 85.443 | 316 | 46 | 0 | 14 | 329 | 9 | 324 | 0.0 | 561 |
| Msa0685380 | AT1G06030.1 | 84.444 | 315 | 49 | 0 | 15 | 329 | 11 | 325 | 0.0 | 559 |
| Msa0685380 | AT2G31390.1 | 83.030 | 330 | 50 | 1 | 1 | 330 | 1 | 324 | 0.0 | 558 |
| Msa0685380 | AT1G06020.1 | 83.175 | 315 | 53 | 0 | 15 | 329 | 10 | 324 | 0.0 | 548 |
| Msa0685380 | AT4G10260.1 | 69.085 | 317 | 98 | 0 | 13 | 329 | 4 | 320 | 1.75e-158 | 446 |
| Msa0685380 | AT1G66430.1 | 65.312 | 320 | 110 | 1 | 13 | 331 | 63 | 382 | 1.05e-153 | 436 |
| Msa0685380 | AT5G51830.2 | 65.615 | 317 | 107 | 1 | 14 | 328 | 22 | 338 | 6.88e-149 | 422 |
| Msa0685380 | AT5G51830.1 | 65.615 | 317 | 107 | 1 | 14 | 328 | 22 | 338 | 6.88e-149 | 422 |
| Msa0685380 | AT1G50390.1 | 64.912 | 171 | 31 | 1 | 160 | 330 | 1 | 142 | 1.56e-72 | 221 |
| Msa0685380 | AT3G54090.1 | 32.425 | 367 | 200 | 6 | 8 | 327 | 96 | 461 | 3.80e-52 | 179 |
| Msa0685380 | AT1G69200.1 | 30.556 | 288 | 178 | 3 | 41 | 307 | 246 | 532 | 1.28e-41 | 153 |
| Msa0685380 | AT1G17160.1 | 29.766 | 299 | 168 | 13 | 46 | 329 | 105 | 376 | 5.70e-19 | 87.0 |
| Msa0685380 | AT1G06730.1 | 26.510 | 298 | 194 | 8 | 47 | 329 | 132 | 419 | 1.83e-11 | 65.5 |
Find 118 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGAAGTAACTTCAAATT+AGG | 0.127503 | 4_4:-49494604 | None:intergenic |
| GAACTACTGGTTACAAAATT+TGG | 0.157679 | 4_4:-49495964 | None:intergenic |
| GGTAACATCATATATGATTT+TGG | 0.182404 | 4_4:+49495920 | Msa0685380:three_prime_UTR |
| AAATTGAATCACGGATGTTT+TGG | 0.238993 | 4_4:+49496067 | Msa0685380:three_prime_UTR |
| CAGGCAAAAGTCTTCCATTA+TGG | 0.241889 | 4_4:+49494328 | Msa0685380:intron |
| CTTGTAACTCTTGGTGAAAA+TGG | 0.245978 | 4_4:+49494622 | Msa0685380:CDS |
| GTAAGCAAATTCTCAGTATA+TGG | 0.266378 | 4_4:+49494485 | Msa0685380:CDS |
| CTAAGCACTCACTTCAAGTA+TGG | 0.282419 | 4_4:-49495504 | None:intergenic |
| AGCAATTACTACTACCAAAA+AGG | 0.287374 | 4_4:+49495686 | Msa0685380:CDS |
| AGCGTTGGAGGCCATTGGTT+TGG | 0.288462 | 4_4:-49492626 | None:intergenic |
| AGTTCAAGATTGAGATCTTC+AGG | 0.313198 | 4_4:-49493018 | None:intergenic |
| TGGAGCCGGTGGCGGGGAGG+AGG | 0.316994 | 4_4:-49492651 | None:intergenic |
| GCGTTGGAGGCCATTGGTTT+GGG | 0.333327 | 4_4:-49492625 | None:intergenic |
| CGTAGTGAGAAGGAAGAATA+TGG | 0.334379 | 4_4:-49492564 | None:intergenic |
| GGGGAGGAGGGAAGCGTTGG+AGG | 0.336425 | 4_4:-49492638 | None:intergenic |
| GACTTTGTCCCAACCACTTC+CGG | 0.340286 | 4_4:+49492706 | Msa0685380:CDS |
| ATTTGGAAGAAAACATTGTT+TGG | 0.348265 | 4_4:-49495947 | None:intergenic |
| TTCAGGATGAAGCAAGGTTA+AGG | 0.361408 | 4_4:+49495634 | Msa0685380:intron |
| TCAAATCTTTATTGAACTAC+TGG | 0.374237 | 4_4:-49495977 | None:intergenic |
| TCCTTCGTTGGAGCTCTGTT+GGG | 0.375710 | 4_4:+49495461 | Msa0685380:CDS |
| TGTCCTTAGCCTGATCAAAA+AGG | 0.382490 | 4_4:+49495740 | Msa0685380:CDS |
| CAAGAAGTAACTTCAAATTA+GGG | 0.389192 | 4_4:-49494603 | None:intergenic |
| GACGTTAGCGGGAGCGCCAC+CGG | 0.393879 | 4_4:-49492767 | None:intergenic |
| TTCCTTCGTTGGAGCTCTGT+TGG | 0.395933 | 4_4:+49495460 | Msa0685380:CDS |
| ACGTTAGCGGGAGCGCCACC+GGG | 0.396140 | 4_4:-49492766 | None:intergenic |
| TCAAACTTATCGATCCATAA+TGG | 0.398109 | 4_4:-49494342 | None:intergenic |
| TCAGGATGAAGCAAGGTTAA+GGG | 0.406452 | 4_4:+49495635 | Msa0685380:intron |
| CAAACCTCCGGCTACCTTTG+TGG | 0.410022 | 4_4:+49494443 | Msa0685380:CDS |
| TATACTGAGAATTTGCTTAC+GGG | 0.413418 | 4_4:-49494482 | None:intergenic |
| CACAAAGGTAGCCGGAGGTT+TGG | 0.427528 | 4_4:-49494442 | None:intergenic |
| TCAGCTTCTGTTGGAAGAGC+TGG | 0.436019 | 4_4:-49495717 | None:intergenic |
| AAGTTACTTCTTGTAACTCT+TGG | 0.438912 | 4_4:+49494613 | Msa0685380:CDS |
| ATATACTGAGAATTTGCTTA+CGG | 0.441354 | 4_4:-49494483 | None:intergenic |
| GTCTCCCTTGCTGAAGCTCC+CGG | 0.446910 | 4_4:+49492730 | Msa0685380:CDS |
| GTCAACACTGTTGATACAAC+CGG | 0.456499 | 4_4:+49495428 | Msa0685380:CDS |
| GTGGAGCTGGAATTTCTAAC+TGG | 0.457777 | 4_4:+49494538 | Msa0685380:CDS |
| ATGAGACTGGAGCCGGTGGC+GGG | 0.462161 | 4_4:-49492658 | None:intergenic |
| ACAGCGATCGCGACGTTAGC+GGG | 0.462632 | 4_4:-49492778 | None:intergenic |
| GGGAGACGCCGGAAGTGGTT+GGG | 0.463516 | 4_4:-49492714 | None:intergenic |
| GGTGCTGGTGATTCCTTCGT+TGG | 0.469003 | 4_4:+49495449 | Msa0685380:CDS |
| ATTTGCTTACGGGCTTCCTC+TGG | 0.470871 | 4_4:-49494472 | None:intergenic |
| AATTCGGTCACATGCTCGCC+GGG | 0.475756 | 4_4:+49492851 | Msa0685380:CDS |
| TAAGCAAATTCTCAGTATAT+GGG | 0.478304 | 4_4:+49494486 | Msa0685380:CDS |
| GTTCTTCTATCAATTTAAGT+TGG | 0.480048 | 4_4:+49495844 | Msa0685380:three_prime_UTR |
| TCCAGTCTCATCGTCAGCTT+CGG | 0.480081 | 4_4:+49492670 | Msa0685380:CDS |
| CAAGGTCAGTGATGTGGAGC+TGG | 0.482074 | 4_4:+49494525 | Msa0685380:CDS |
| TGCACAAATCAGAATTTCAA+AGG | 0.482727 | 4_4:+49495386 | Msa0685380:intron |
| GCCGAAGCTGACGATGAGAC+TGG | 0.484454 | 4_4:-49492671 | None:intergenic |
| GGCGGGGAGGAGGGAAGCGT+TGG | 0.487671 | 4_4:-49492641 | None:intergenic |
| TCTGCCTTCGTCGGAAAACT+CGG | 0.489892 | 4_4:+49492820 | Msa0685380:CDS |
| AGGGAAGCGTTGGAGGCCAT+TGG | 0.492348 | 4_4:-49492631 | None:intergenic |
| AGCAAGGGAGACGCCGGAAG+TGG | 0.502504 | 4_4:-49492719 | None:intergenic |
| GGAGCCGGTGGCGGGGAGGA+GGG | 0.504793 | 4_4:-49492650 | None:intergenic |
| CTTAAATTTGCCAATGCATG+TGG | 0.505670 | 4_4:+49495663 | Msa0685380:CDS |
| CTAAGGACATCAGCTTCTGT+TGG | 0.510882 | 4_4:-49495726 | None:intergenic |
| AAATCACAAATTAAATCAGT+TGG | 0.516128 | 4_4:-49496021 | None:intergenic |
| GCTTCCCTCCTCCCCGCCAC+CGG | 0.518084 | 4_4:+49492646 | Msa0685380:CDS |
| AAACTCGGTGATGATGAATT+CGG | 0.518336 | 4_4:+49492835 | Msa0685380:CDS |
| AGGGAGACGCCGGAAGTGGT+TGG | 0.518704 | 4_4:-49492715 | None:intergenic |
| TGAGACTGGAGCCGGTGGCG+GGG | 0.520147 | 4_4:-49492657 | None:intergenic |
| ACTTCAAATTAGGGTGCCAC+AGG | 0.521764 | 4_4:-49494594 | None:intergenic |
| TACAAGAGAGTGTGATTAGG+TGG | 0.524345 | 4_4:-49492532 | None:intergenic |
| TGGATCGATAAGTTTGATTG+TGG | 0.524813 | 4_4:+49494348 | Msa0685380:CDS |
| GAAAACAACGTGAGAGGTGA+TGG | 0.526062 | 4_4:+49492883 | Msa0685380:CDS |
| CCCGGTTTCCTCAAAGCCCC+CGG | 0.527234 | 4_4:+49492748 | Msa0685380:CDS |
| GATGAGACTGGAGCCGGTGG+CGG | 0.528923 | 4_4:-49492659 | None:intergenic |
| ATGGAAGTTGCTAAGGAGGC+AGG | 0.531001 | 4_4:+49494400 | Msa0685380:CDS |
| ATATACAAGAGAGTGTGATT+AGG | 0.536928 | 4_4:-49492535 | None:intergenic |
| GAATTCGGTCACATGCTCGC+CGG | 0.537803 | 4_4:+49492850 | Msa0685380:CDS |
| TTACGGGCTTCCTCTGGTGA+AGG | 0.541696 | 4_4:-49494466 | None:intergenic |
| AGTAATTGCTCCACATGCAT+TGG | 0.546129 | 4_4:-49495673 | None:intergenic |
| CAAAGGCGCTCGTACTGCAC+TGG | 0.546743 | 4_4:+49492918 | Msa0685380:CDS |
| GAAGGCAATGGAAGTTGCTA+AGG | 0.548461 | 4_4:+49494393 | Msa0685380:CDS |
| AGCTTCAGCAAGGGAGACGC+CGG | 0.551078 | 4_4:-49492725 | None:intergenic |
| GACTGGAGCCGGTGGCGGGG+AGG | 0.551818 | 4_4:-49492654 | None:intergenic |
| GTGAAGGCCACAAAGGTAGC+CGG | 0.553387 | 4_4:-49494450 | None:intergenic |
| TTCAGATGTGCTGATCTGCA+TGG | 0.553886 | 4_4:-49494373 | None:intergenic |
| ACCTTTGTGGCCTTCACCAG+AGG | 0.557240 | 4_4:+49494456 | Msa0685380:CDS |
| GATTTGAGTCCACATTGTCT+CGG | 0.557259 | 4_4:+49495998 | Msa0685380:three_prime_UTR |
| GCGATCGCTGTTTCACGACT+CGG | 0.559904 | 4_4:+49492790 | Msa0685380:CDS |
| ACTGTTGATACAACCGGTGC+TGG | 0.561415 | 4_4:+49495434 | Msa0685380:CDS |
| TTAAATTTCAGGATGAAGCA+AGG | 0.562028 | 4_4:+49495628 | Msa0685380:intron |
| AACGAAGGAATCACCAGCAC+CGG | 0.567026 | 4_4:-49495447 | None:intergenic |
| GGCAATGGAAGTTGCTAAGG+AGG | 0.567696 | 4_4:+49494396 | Msa0685380:CDS |
| TCTCTTATGATCCAAACCTC+CGG | 0.571114 | 4_4:+49494431 | Msa0685380:CDS |
| ATTTCCTTTCTGCATATCAA+CGG | 0.572308 | 4_4:+49495899 | Msa0685380:three_prime_UTR |
| ATGCAGATCAGCACATCTGA+AGG | 0.574430 | 4_4:+49494375 | Msa0685380:CDS |
| GATGGTATCAACTTTGACAA+AGG | 0.579902 | 4_4:+49492901 | Msa0685380:CDS |
| ATTTGAATAACGTAGTGAGA+AGG | 0.580855 | 4_4:-49492574 | None:intergenic |
| TCCTCTGGTGAAGGCCACAA+AGG | 0.588528 | 4_4:-49494457 | None:intergenic |
| ATCAGCACATCTGAAGGCAA+TGG | 0.591539 | 4_4:+49494381 | Msa0685380:CDS |
| GCTGACGATGAGACTGGAGC+CGG | 0.591881 | 4_4:-49492665 | None:intergenic |
| TTGTATCAACAGTGTTGACA+TGG | 0.598391 | 4_4:-49495424 | None:intergenic |
| CGTTAGCGGGAGCGCCACCG+GGG | 0.599162 | 4_4:-49492765 | None:intergenic |
| GCCCAACAGAGCTCCAACGA+AGG | 0.601582 | 4_4:-49495462 | None:intergenic |
| TTGAAAGAAAACAACGTGAG+AGG | 0.604412 | 4_4:+49492877 | Msa0685380:CDS |
| TCTCATCAAGGTCAGTGATG+TGG | 0.606659 | 4_4:+49494519 | Msa0685380:CDS |
| GTTACCGTTGATATGCAGAA+AGG | 0.607874 | 4_4:-49495903 | None:intergenic |
| CATGAACTCACGCTCTCCAT+CGG | 0.608461 | 4_4:-49492959 | None:intergenic |
| TTTGTTACTCTACGCGCCGA+TGG | 0.610292 | 4_4:+49492943 | Msa0685380:CDS |
| GGCGGTAAATCTGCCTTCGT+CGG | 0.612156 | 4_4:+49492811 | Msa0685380:CDS |
| GACGATGAGACTGGAGCCGG+TGG | 0.614666 | 4_4:-49492662 | None:intergenic |
| AACAGCGATCGCGACGTTAG+CGG | 0.618500 | 4_4:-49492779 | None:intergenic |
| CTCACAACATCCCAAACCAA+TGG | 0.632258 | 4_4:+49492615 | Msa0685380:exon |
| ATCAGTTGGCCGAGACAATG+TGG | 0.632522 | 4_4:-49496007 | None:intergenic |
| ATTGGTCAGAAATTGAATCA+CGG | 0.636571 | 4_4:+49496058 | Msa0685380:three_prime_UTR |
| GGACAAGGCTGATCTCATCA+AGG | 0.638589 | 4_4:+49494507 | Msa0685380:CDS |
| GGAAACCGGGAGCTTCAGCA+AGG | 0.638648 | 4_4:-49492735 | None:intergenic |
| ATGCTTCTGCTCTCTCCCTG+TGG | 0.639152 | 4_4:+49494578 | Msa0685380:CDS |
| GAAACCGGGAGCTTCAGCAA+GGG | 0.654816 | 4_4:-49492734 | None:intergenic |
| GTTAGCGGGAGCGCCACCGG+GGG | 0.656091 | 4_4:-49492764 | None:intergenic |
| GTAAGAAGCATATCAGCACT+CGG | 0.662701 | 4_4:-49492994 | None:intergenic |
| AATTCTCAGTATATGGGACA+AGG | 0.663851 | 4_4:+49494492 | Msa0685380:CDS |
| ATCGCTGTTTCACGACTCGG+CGG | 0.669298 | 4_4:+49492793 | Msa0685380:CDS |
| CTTCAAATTAGGGTGCCACA+GGG | 0.672272 | 4_4:-49494593 | None:intergenic |
| AATTGATAGAAGAACTCCAG+CGG | 0.685971 | 4_4:-49495836 | None:intergenic |
| AAGGCCACAAAGGTAGCCGG+AGG | 0.689884 | 4_4:-49494447 | None:intergenic |
| TGGTTCCAGATATTATACAA+AGG | 0.703810 | 4_4:+49494642 | Msa0685380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTTTACGTTATATAT+TGG | - | chr4_4:49493197-49493216 | None:intergenic | 10.0% |
| !! | ATATACTATTATGACTTAAT+TGG | + | chr4_4:49493667-49493686 | Msa0685380:intron | 15.0% |
| !!! | TAGTTGATTTTATTAGTTTT+AGG | + | chr4_4:49493718-49493737 | Msa0685380:intron | 15.0% |
| !!! | AGTTGATTTTATTAGTTTTA+GGG | + | chr4_4:49493719-49493738 | Msa0685380:intron | 15.0% |
| !!! | TTAATTTCTTTGTTTTTCAA+AGG | - | chr4_4:49493843-49493862 | None:intergenic | 15.0% |
| !! | AGAATAAAAAAAAAAAGGTT+AGG | - | chr4_4:49493960-49493979 | None:intergenic | 15.0% |
| !! | AATAAGTAAAATTGAAGATT+AGG | - | chr4_4:49494675-49494694 | None:intergenic | 15.0% |
| !!! | TTTTTGATCTGATTTTTTTG+TGG | + | chr4_4:49493095-49493114 | Msa0685380:intron | 20.0% |
| !! | AATATTTATACGATCAGAAA+AGG | + | chr4_4:49493248-49493267 | Msa0685380:intron | 20.0% |
| !!! | TCATAATTCAATTACTCTTT+TGG | - | chr4_4:49494296-49494315 | None:intergenic | 20.0% |
| !!! | ATTATGAAACATGATTTTTC+AGG | + | chr4_4:49494309-49494328 | Msa0685380:intron | 20.0% |
| !!! | TTTTACCTTTGTATAATATC+TGG | - | chr4_4:49494650-49494669 | None:intergenic | 20.0% |
| !! | TATCCATACTTGTATTATAT+TGG | + | chr4_4:49495544-49495563 | Msa0685380:intron | 20.0% |
| !!! | TTTTTCACGTTTTAAATTTC+AGG | + | chr4_4:49495617-49495636 | Msa0685380:intron | 20.0% |
| !! | AAATCACAAATTAAATCAGT+TGG | - | chr4_4:49496024-49496043 | None:intergenic | 20.0% |
| ! | TCTAACGAATCAAAATACAA+AGG | - | chr4_4:49493531-49493550 | None:intergenic | 25.0% |
| ! | AACTATAGTGAATCAAAAAC+AGG | - | chr4_4:49493568-49493587 | None:intergenic | 25.0% |
| !! | GGTAAATGTGTGTATAATTT+TGG | + | chr4_4:49493688-49493707 | Msa0685380:intron | 25.0% |
| !! | AGTTTATAGAGTGTTAATTG+TGG | - | chr4_4:49493818-49493837 | None:intergenic | 25.0% |
| !!! | TTTTCTAAAATATATGCACG+TGG | - | chr4_4:49493876-49493895 | None:intergenic | 25.0% |
| ! | TTAAGAATTCGAATACCAAA+CGG | + | chr4_4:49494098-49494117 | Msa0685380:intron | 25.0% |
| !! | AATCAAAATCTGCATTGTTT+TGG | + | chr4_4:49494197-49494216 | Msa0685380:intron | 25.0% |
| !! | ATATACTGAGAATTTGCTTA+CGG | - | chr4_4:49494486-49494505 | None:intergenic | 25.0% |
| ! | TAAGCAAATTCTCAGTATAT+GGG | + | chr4_4:49494486-49494505 | Msa0685380:CDS | 25.0% |
| ! | CAAGAAGTAACTTCAAATTA+GGG | - | chr4_4:49494606-49494625 | None:intergenic | 25.0% |
| ! | ACAAGAAGTAACTTCAAATT+AGG | - | chr4_4:49494607-49494626 | None:intergenic | 25.0% |
| ! | GGTTCAAATTCAATTGAAAA+AGG | + | chr4_4:49494975-49494994 | Msa0685380:intron | 25.0% |
| ! | TTGTTTACAGTTGAAAAGTA+AGG | - | chr4_4:49495039-49495058 | None:intergenic | 25.0% |
| ! | TTCCATTCAATAACTTAACT+AGG | + | chr4_4:49495089-49495108 | Msa0685380:intron | 25.0% |
| ! | TCCATTCAATAACTTAACTA+GGG | + | chr4_4:49495090-49495109 | Msa0685380:intron | 25.0% |
| !! | AACATGCAATATTGTTATTG+AGG | - | chr4_4:49495304-49495323 | None:intergenic | 25.0% |
| !!! | GTTTTAGAAAGTATGTTAAG+TGG | + | chr4_4:49495321-49495340 | Msa0685380:intron | 25.0% |
| ! | ACACCAATATAATACAAGTA+TGG | - | chr4_4:49495550-49495569 | None:intergenic | 25.0% |
| ! | GTTCTTCTATCAATTTAAGT+TGG | + | chr4_4:49495844-49495863 | Msa0685380:three_prime_UTR | 25.0% |
| !!! | TAAGTTGGTTTTTATCTCTT+TGG | + | chr4_4:49495859-49495878 | Msa0685380:three_prime_UTR | 25.0% |
| !! | GGTAACATCATATATGATTT+TGG | + | chr4_4:49495920-49495939 | Msa0685380:three_prime_UTR | 25.0% |
| ! | ATTTGGAAGAAAACATTGTT+TGG | - | chr4_4:49495950-49495969 | None:intergenic | 25.0% |
| ! | TCAAATCTTTATTGAACTAC+TGG | - | chr4_4:49495980-49495999 | None:intergenic | 25.0% |
| ! | ATATACAAGAGAGTGTGATT+AGG | - | chr4_4:49492538-49492557 | None:intergenic | 30.0% |
| ATTTGAATAACGTAGTGAGA+AGG | - | chr4_4:49492577-49492596 | None:intergenic | 30.0% | |
| ATCAGAAAAGGTGATATACA+TGG | + | chr4_4:49493260-49493279 | Msa0685380:intron | 30.0% | |
| TCAGAAAAGGTGATATACAT+GGG | + | chr4_4:49493261-49493280 | Msa0685380:intron | 30.0% | |
| TTATCGTGACGTTTATTGAT+TGG | + | chr4_4:49493460-49493479 | Msa0685380:intron | 30.0% | |
| ATGTGTGCAAGTAGTAAAAT+TGG | + | chr4_4:49494041-49494060 | Msa0685380:intron | 30.0% | |
| TTGGATCATCTGATCTTAAT+TGG | - | chr4_4:49494147-49494166 | None:intergenic | 30.0% | |
| TTAAAAACCGAGCTTGAATT+TGG | - | chr4_4:49494166-49494185 | None:intergenic | 30.0% | |
| GGTAGAAAATTGATCAAGAT+TGG | - | chr4_4:49494228-49494247 | None:intergenic | 30.0% | |
| ! | TCTTTTGGCATGAAAAAAAC+TGG | - | chr4_4:49494281-49494300 | None:intergenic | 30.0% |
| TCAAACTTATCGATCCATAA+TGG | - | chr4_4:49494345-49494364 | None:intergenic | 30.0% | |
| ! | TATACTGAGAATTTGCTTAC+GGG | - | chr4_4:49494485-49494504 | None:intergenic | 30.0% |
| GTAAGCAAATTCTCAGTATA+TGG | + | chr4_4:49494485-49494504 | Msa0685380:CDS | 30.0% | |
| AAGTTACTTCTTGTAACTCT+TGG | + | chr4_4:49494613-49494632 | Msa0685380:CDS | 30.0% | |
| TGGTTCCAGATATTATACAA+AGG | + | chr4_4:49494642-49494661 | Msa0685380:CDS | 30.0% | |
| TTTCCAATGATGATCTTGTT+TGG | + | chr4_4:49494773-49494792 | Msa0685380:intron | 30.0% | |
| TATCCAAACAAGATCATCAT+TGG | - | chr4_4:49494779-49494798 | None:intergenic | 30.0% | |
| TTGAATTTGAACCTAACTAC+TGG | - | chr4_4:49494968-49494987 | None:intergenic | 30.0% | |
| TTACAGTTGAAAAGTAAGGT+GGG | - | chr4_4:49495035-49495054 | None:intergenic | 30.0% | |
| TTTACAGTTGAAAAGTAAGG+TGG | - | chr4_4:49495036-49495055 | None:intergenic | 30.0% | |
| CCATTCAATAACTTAACTAG+GGG | + | chr4_4:49495091-49495110 | Msa0685380:intron | 30.0% | |
| CATTCAATAACTTAACTAGG+GGG | + | chr4_4:49495092-49495111 | Msa0685380:intron | 30.0% | |
| ! | AATTCTGATTTGTGCAGAAA+AGG | - | chr4_4:49495382-49495401 | None:intergenic | 30.0% |
| TGCACAAATCAGAATTTCAA+AGG | + | chr4_4:49495386-49495405 | Msa0685380:intron | 30.0% | |
| TTAAATTTCAGGATGAAGCA+AGG | + | chr4_4:49495628-49495647 | Msa0685380:intron | 30.0% | |
| AGCAATTACTACTACCAAAA+AGG | + | chr4_4:49495686-49495705 | Msa0685380:CDS | 30.0% | |
| GCAATTACTACTACCAAAAA+GGG | + | chr4_4:49495687-49495706 | Msa0685380:CDS | 30.0% | |
| ! | ATTTCTATGCCTTTTTGATC+AGG | - | chr4_4:49495752-49495771 | None:intergenic | 30.0% |
| ATTTCCTTTCTGCATATCAA+CGG | + | chr4_4:49495899-49495918 | Msa0685380:three_prime_UTR | 30.0% | |
| ! | GAACTACTGGTTACAAAATT+TGG | - | chr4_4:49495967-49495986 | None:intergenic | 30.0% |
| ATTGGTCAGAAATTGAATCA+CGG | + | chr4_4:49496058-49496077 | Msa0685380:three_prime_UTR | 30.0% | |
| ! | AAACTCGGTGATGATGAATT+CGG | + | chr4_4:49492835-49492854 | Msa0685380:CDS | 35.0% |
| !! | GTTGTTTTCTTTCAAGATCC+CGG | - | chr4_4:49492872-49492891 | None:intergenic | 35.0% |
| TTGAAAGAAAACAACGTGAG+AGG | + | chr4_4:49492877-49492896 | Msa0685380:CDS | 35.0% | |
| GATGGTATCAACTTTGACAA+AGG | + | chr4_4:49492901-49492920 | Msa0685380:CDS | 35.0% | |
| AGTTCAAGATTGAGATCTTC+AGG | - | chr4_4:49493021-49493040 | None:intergenic | 35.0% | |
| ! | CACACTAGTATGTTTGAAGT+GGG | - | chr4_4:49493381-49493400 | None:intergenic | 35.0% |
| TCACACTAGTATGTTTGAAG+TGG | - | chr4_4:49493382-49493401 | None:intergenic | 35.0% | |
| GCATTATTGCATGCAAATGA+AGG | + | chr4_4:49493791-49493810 | Msa0685380:intron | 35.0% | |
| AATATATGCACGTGGTTTCT+AGG | - | chr4_4:49493868-49493887 | None:intergenic | 35.0% | |
| ! | GCAAGTAGTAAAATTGGTCT+AGG | + | chr4_4:49494047-49494066 | Msa0685380:intron | 35.0% |
| ! | TAAAATTGGTCTAGGTCACT+AGG | + | chr4_4:49494055-49494074 | Msa0685380:intron | 35.0% |
| AGATGATCCAAATTCAAGCT+CGG | + | chr4_4:49494156-49494175 | Msa0685380:intron | 35.0% | |
| TGGATCGATAAGTTTGATTG+TGG | + | chr4_4:49494348-49494367 | Msa0685380:CDS | 35.0% | |
| AATTCTCAGTATATGGGACA+AGG | + | chr4_4:49494492-49494511 | Msa0685380:CDS | 35.0% | |
| CTTGTAACTCTTGGTGAAAA+TGG | + | chr4_4:49494622-49494641 | Msa0685380:CDS | 35.0% | |
| CCAGCAAGTAATAGAGAAAA+AGG | - | chr4_4:49494698-49494717 | None:intergenic | 35.0% | |
| ! | CCTTTTTCTCTATTACTTGC+TGG | + | chr4_4:49494695-49494714 | Msa0685380:intron | 35.0% |
| TTTCACTCTTAGCCTACATA+GGG | + | chr4_4:49494730-49494749 | Msa0685380:intron | 35.0% | |
| AGTACTACAATACCCTATGT+AGG | - | chr4_4:49494745-49494764 | None:intergenic | 35.0% | |
| !! | CATAGGGTATTGTAGTACTT+TGG | + | chr4_4:49494746-49494765 | Msa0685380:intron | 35.0% |
| AAATGCTTATGCCAGTAGTT+AGG | + | chr4_4:49494954-49494973 | Msa0685380:intron | 35.0% | |
| CCCCTAGTTAAGTTATTGAA+TGG | - | chr4_4:49495094-49495113 | None:intergenic | 35.0% | |
| CTACAATCTAAATGCAGAGA+GGG | - | chr4_4:49495255-49495274 | None:intergenic | 35.0% | |
| ACTACAATCTAAATGCAGAG+AGG | - | chr4_4:49495256-49495275 | None:intergenic | 35.0% | |
| !! | TTGTATCAACAGTGTTGACA+TGG | - | chr4_4:49495427-49495446 | None:intergenic | 35.0% |
| CTTAAATTTGCCAATGCATG+TGG | + | chr4_4:49495663-49495682 | Msa0685380:CDS | 35.0% | |
| AATTGATAGAAGAACTCCAG+CGG | - | chr4_4:49495839-49495858 | None:intergenic | 35.0% | |
| ! | TACAAGAGAGTGTGATTAGG+TGG | - | chr4_4:49492535-49492554 | None:intergenic | 40.0% |
| CGTAGTGAGAAGGAAGAATA+TGG | - | chr4_4:49492567-49492586 | None:intergenic | 40.0% | |
| ! | GTAAGAAGCATATCAGCACT+CGG | - | chr4_4:49492997-49493016 | None:intergenic | 40.0% |
| GAAAAGGTGATATACATGGG+TGG | + | chr4_4:49493264-49493283 | Msa0685380:intron | 40.0% | |
| !!! | CTGACGCTTTTTTTTGGTGA+AGG | + | chr4_4:49493338-49493357 | Msa0685380:intron | 40.0% |
| !!! | ACGCTTTTTTTTGGTGAAGG+AGG | + | chr4_4:49493341-49493360 | Msa0685380:intron | 40.0% |
| CATACTAGTGTGATACACTG+TGG | + | chr4_4:49493389-49493408 | Msa0685380:intron | 40.0% | |
| ! | GTGACGTTTATTGATTGGAG+TGG | + | chr4_4:49493465-49493484 | Msa0685380:intron | 40.0% |
| ! | GTACTGTTGTGTTGCTATCA+TGG | + | chr4_4:49493490-49493509 | Msa0685380:intron | 40.0% |
| TCAATTCGATGAGAGAGTGA+TGG | + | chr4_4:49493742-49493761 | Msa0685380:intron | 40.0% | |
| GATGAGAGAGTGATGGTTTA+AGG | + | chr4_4:49493749-49493768 | Msa0685380:intron | 40.0% | |
| AAACCGCGCATGATATAGTA+GGG | - | chr4_4:49493912-49493931 | None:intergenic | 40.0% | |
| TAAACCGCGCATGATATAGT+AGG | - | chr4_4:49493913-49493932 | None:intergenic | 40.0% | |
| TGGTTAATCCCACACATTAG+AGG | + | chr4_4:49493984-49494003 | Msa0685380:intron | 40.0% | |
| TTGCACACATTTGATGTGTC+GGG | - | chr4_4:49494031-49494050 | None:intergenic | 40.0% | |
| CTTGCACACATTTGATGTGT+CGG | - | chr4_4:49494032-49494051 | None:intergenic | 40.0% | |
| GAATTCGAATACCAAACGGT+TGG | + | chr4_4:49494102-49494121 | Msa0685380:intron | 40.0% | |
| ! | CTTAATTGGATCAAAAGCGC+TGG | - | chr4_4:49494133-49494152 | None:intergenic | 40.0% |
| CAGGCAAAAGTCTTCCATTA+TGG | + | chr4_4:49494328-49494347 | Msa0685380:intron | 40.0% | |
| TCTCTTATGATCCAAACCTC+CGG | + | chr4_4:49494431-49494450 | Msa0685380:CDS | 40.0% | |
| CTTTCACTCTTAGCCTACAT+AGG | + | chr4_4:49494729-49494748 | Msa0685380:intron | 40.0% | |
| TCAATAACTTAACTAGGGGG+AGG | + | chr4_4:49495095-49495114 | Msa0685380:intron | 40.0% | |
| CAATAACTTAACTAGGGGGA+GGG | + | chr4_4:49495096-49495115 | Msa0685380:intron | 40.0% | |
| AATAACTTAACTAGGGGGAG+GGG | + | chr4_4:49495097-49495116 | Msa0685380:intron | 40.0% | |
| ! | GAGGGGCTTACTATATTTTG+TGG | + | chr4_4:49495114-49495133 | Msa0685380:intron | 40.0% |
| ATACATTCACACCTGTGCTA+TGG | + | chr4_4:49495173-49495192 | Msa0685380:intron | 40.0% | |
| GTCAACACTGTTGATACAAC+CGG | + | chr4_4:49495428-49495447 | Msa0685380:CDS | 40.0% | |
| CTAAGCACTCACTTCAAGTA+TGG | - | chr4_4:49495507-49495526 | None:intergenic | 40.0% | |
| TTCAGGATGAAGCAAGGTTA+AGG | + | chr4_4:49495634-49495653 | Msa0685380:intron | 40.0% | |
| TCAGGATGAAGCAAGGTTAA+GGG | + | chr4_4:49495635-49495654 | Msa0685380:intron | 40.0% | |
| AGTAATTGCTCCACATGCAT+TGG | - | chr4_4:49495676-49495695 | None:intergenic | 40.0% | |
| TGTCCTTAGCCTGATCAAAA+AGG | + | chr4_4:49495740-49495759 | Msa0685380:CDS | 40.0% | |
| ! | ATGCCTTTTTGATCAGGCTA+AGG | - | chr4_4:49495746-49495765 | None:intergenic | 40.0% |
| ACTCCAGCGGAAAAATGTAA+GGG | - | chr4_4:49495826-49495845 | None:intergenic | 40.0% | |
| AACTCCAGCGGAAAAATGTA+AGG | - | chr4_4:49495827-49495846 | None:intergenic | 40.0% | |
| GTTACCGTTGATATGCAGAA+AGG | - | chr4_4:49495906-49495925 | None:intergenic | 40.0% | |
| GATTTGAGTCCACATTGTCT+CGG | + | chr4_4:49495998-49496017 | Msa0685380:three_prime_UTR | 40.0% | |
| CTCACAACATCCCAAACCAA+TGG | + | chr4_4:49492615-49492634 | Msa0685380:exon | 45.0% | |
| GAAAACAACGTGAGAGGTGA+TGG | + | chr4_4:49492883-49492902 | Msa0685380:CDS | 45.0% | |
| ! | GTTTCACGCGATTTTCCATG+CGG | + | chr4_4:49493145-49493164 | Msa0685380:intron | 45.0% |
| GGTCTATCTAGATCCACCTA+GGG | - | chr4_4:49493176-49493195 | None:intergenic | 45.0% | |
| TGGTCTATCTAGATCCACCT+AGG | - | chr4_4:49493177-49493196 | None:intergenic | 45.0% | |
| ! | TCACGTGTTTTCCTTGCTCA+GGG | + | chr4_4:49493309-49493328 | Msa0685380:intron | 45.0% |
| !!! | CTGTGGCTGACGCTTTTTTT+TGG | + | chr4_4:49493332-49493351 | Msa0685380:intron | 45.0% |
| !! | TTTTTGGTGAAGGAGGCAAG+TGG | + | chr4_4:49493348-49493367 | Msa0685380:intron | 45.0% |
| TAGCCCTACTATATCATGCG+CGG | + | chr4_4:49493906-49493925 | Msa0685380:intron | 45.0% | |
| CCGCAATTCCTCTAATGTGT+GGG | - | chr4_4:49493995-49494014 | None:intergenic | 45.0% | |
| CCCACACATTAGAGGAATTG+CGG | + | chr4_4:49493992-49494011 | Msa0685380:intron | 45.0% | |
| TCCGCAATTCCTCTAATGTG+TGG | - | chr4_4:49493996-49494015 | None:intergenic | 45.0% | |
| ! | TTCAGATGTGCTGATCTGCA+TGG | - | chr4_4:49494376-49494395 | None:intergenic | 45.0% |
| ATGCAGATCAGCACATCTGA+AGG | + | chr4_4:49494375-49494394 | Msa0685380:CDS | 45.0% | |
| ATCAGCACATCTGAAGGCAA+TGG | + | chr4_4:49494381-49494400 | Msa0685380:CDS | 45.0% | |
| GAAGGCAATGGAAGTTGCTA+AGG | + | chr4_4:49494393-49494412 | Msa0685380:CDS | 45.0% | |
| TCTCATCAAGGTCAGTGATG+TGG | + | chr4_4:49494519-49494538 | Msa0685380:CDS | 45.0% | |
| GTGGAGCTGGAATTTCTAAC+TGG | + | chr4_4:49494538-49494557 | Msa0685380:CDS | 45.0% | |
| ! | CTTCAAATTAGGGTGCCACA+GGG | - | chr4_4:49494596-49494615 | None:intergenic | 45.0% |
| ! | ACTTCAAATTAGGGTGCCAC+AGG | - | chr4_4:49494597-49494616 | None:intergenic | 45.0% |
| !! | TGGCTTTAGTGGACTTCTCA+TGG | + | chr4_4:49495193-49495212 | Msa0685380:intron | 45.0% |
| CAATCTAAATGCAGAGAGGG+AGG | - | chr4_4:49495252-49495271 | None:intergenic | 45.0% | |
| ! | AGCTGGAATTGCTCCCTTTT+TGG | - | chr4_4:49495703-49495722 | None:intergenic | 45.0% |
| CTAAGGACATCAGCTTCTGT+TGG | - | chr4_4:49495729-49495748 | None:intergenic | 45.0% | |
| ! | TCACCCTTACATTTTTCCGC+TGG | + | chr4_4:49495820-49495839 | Msa0685380:three_prime_UTR | 45.0% |
| !!! | ATATTTTATTTATCTAAAAA+AGG | - | chr4_4:49493421-49493440 | None:intergenic | 5.0% |
| !! | ATAAAAGAATAAAAAAAAAA+AGG | - | chr4_4:49493965-49493984 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTATTCTTTTA+TGG | + | chr4_4:49493964-49493983 | Msa0685380:intron | 5.0% |
| !!! | ATTTTTTTCATTAAAATAAT+TGG | + | chr4_4:49496040-49496059 | Msa0685380:three_prime_UTR | 5.0% |
| TCCAGTCTCATCGTCAGCTT+CGG | + | chr4_4:49492670-49492689 | Msa0685380:CDS | 50.0% | |
| GACTTTGTCCCAACCACTTC+CGG | + | chr4_4:49492706-49492725 | Msa0685380:CDS | 50.0% | |
| TCTGCCTTCGTCGGAAAACT+CGG | + | chr4_4:49492820-49492839 | Msa0685380:CDS | 50.0% | |
| ! | ATCACCGAGTTTTCCGACGA+AGG | - | chr4_4:49492827-49492846 | None:intergenic | 50.0% |
| TTTGTTACTCTACGCGCCGA+TGG | + | chr4_4:49492943-49492962 | Msa0685380:CDS | 50.0% | |
| CATGAACTCACGCTCTCCAT+CGG | - | chr4_4:49492962-49492981 | None:intergenic | 50.0% | |
| GTGGTGTGTTTGTCACGTGA+GGG | + | chr4_4:49493283-49493302 | Msa0685380:intron | 50.0% | |
| ! | GTCACGTGTTTTCCTTGCTC+AGG | + | chr4_4:49493308-49493327 | Msa0685380:intron | 50.0% |
| GTGAAGGAGGCAAGTGGTTT+GGG | + | chr4_4:49493354-49493373 | Msa0685380:intron | 50.0% | |
| CTAGGTCACTAGGTGAGTAG+TGG | + | chr4_4:49494065-49494084 | Msa0685380:intron | 50.0% | |
| CTCACACGCGCATACAAAAC+AGG | - | chr4_4:49494249-49494268 | None:intergenic | 50.0% | |
| TTTGTATGCGCGTGTGAGTG+AGG | + | chr4_4:49494251-49494270 | Msa0685380:intron | 50.0% | |
| TTGTATGCGCGTGTGAGTGA+GGG | + | chr4_4:49494252-49494271 | Msa0685380:intron | 50.0% | |
| GGCAATGGAAGTTGCTAAGG+AGG | + | chr4_4:49494396-49494415 | Msa0685380:CDS | 50.0% | |
| ATGGAAGTTGCTAAGGAGGC+AGG | + | chr4_4:49494400-49494419 | Msa0685380:CDS | 50.0% | |
| ATTTGCTTACGGGCTTCCTC+TGG | - | chr4_4:49494475-49494494 | None:intergenic | 50.0% | |
| GGACAAGGCTGATCTCATCA+AGG | + | chr4_4:49494507-49494526 | Msa0685380:CDS | 50.0% | |
| !! | CACCTGTGCTATGGCTTTAG+TGG | + | chr4_4:49495182-49495201 | Msa0685380:intron | 50.0% |
| GTCCACTAAAGCCATAGCAC+AGG | - | chr4_4:49495187-49495206 | None:intergenic | 50.0% | |
| ACTGTTGATACAACCGGTGC+TGG | + | chr4_4:49495434-49495453 | Msa0685380:CDS | 50.0% | |
| AACGAAGGAATCACCAGCAC+CGG | - | chr4_4:49495450-49495469 | None:intergenic | 50.0% | |
| TTCCTTCGTTGGAGCTCTGT+TGG | + | chr4_4:49495460-49495479 | Msa0685380:CDS | 50.0% | |
| TCCTTCGTTGGAGCTCTGTT+GGG | + | chr4_4:49495461-49495480 | Msa0685380:CDS | 50.0% | |
| TCAGCTTCTGTTGGAAGAGC+TGG | - | chr4_4:49495720-49495739 | None:intergenic | 50.0% | |
| ATCAGTTGGCCGAGACAATG+TGG | - | chr4_4:49496010-49496029 | None:intergenic | 50.0% | |
| !! | GCGTTGGAGGCCATTGGTTT+GGG | - | chr4_4:49492628-49492647 | None:intergenic | 55.0% |
| ! | AGCGTTGGAGGCCATTGGTT+TGG | - | chr4_4:49492629-49492648 | None:intergenic | 55.0% |
| GAAACCGGGAGCTTCAGCAA+GGG | - | chr4_4:49492737-49492756 | None:intergenic | 55.0% | |
| AACAGCGATCGCGACGTTAG+CGG | - | chr4_4:49492782-49492801 | None:intergenic | 55.0% | |
| ! | GCGATCGCTGTTTCACGACT+CGG | + | chr4_4:49492790-49492809 | Msa0685380:CDS | 55.0% |
| ! | ATCGCTGTTTCACGACTCGG+CGG | + | chr4_4:49492793-49492812 | Msa0685380:CDS | 55.0% |
| GGCGGTAAATCTGCCTTCGT+CGG | + | chr4_4:49492811-49492830 | Msa0685380:CDS | 55.0% | |
| GAATTCGGTCACATGCTCGC+CGG | + | chr4_4:49492850-49492869 | Msa0685380:CDS | 55.0% | |
| AATTCGGTCACATGCTCGCC+GGG | + | chr4_4:49492851-49492870 | Msa0685380:CDS | 55.0% | |
| ! | TCACGCGATTTTCCATGCGG+TGG | + | chr4_4:49493148-49493167 | Msa0685380:intron | 55.0% |
| ! | CACGCGATTTTCCATGCGGT+GGG | + | chr4_4:49493149-49493168 | Msa0685380:intron | 55.0% |
| GGTGGTGTGTTTGTCACGTG+AGG | + | chr4_4:49493282-49493301 | Msa0685380:intron | 55.0% | |
| ! | GTTTTCCTTGCTCAGGGCTG+TGG | + | chr4_4:49493315-49493334 | Msa0685380:intron | 55.0% |
| GGTGAAGGAGGCAAGTGGTT+TGG | + | chr4_4:49493353-49493372 | Msa0685380:intron | 55.0% | |
| GGTCACTAGGTGAGTAGTGG+TGG | + | chr4_4:49494068-49494087 | Msa0685380:intron | 55.0% | |
| CACTAGGTGAGTAGTGGTGG+TGG | + | chr4_4:49494071-49494090 | Msa0685380:intron | 55.0% | |
| !! | TAGGTGAGTAGTGGTGGTGG+TGG | + | chr4_4:49494074-49494093 | Msa0685380:intron | 55.0% |
| CGCTGGAATCACCAACCGTT+TGG | - | chr4_4:49494116-49494135 | None:intergenic | 55.0% | |
| CACAAAGGTAGCCGGAGGTT+TGG | - | chr4_4:49494445-49494464 | None:intergenic | 55.0% | |
| CAAACCTCCGGCTACCTTTG+TGG | + | chr4_4:49494443-49494462 | Msa0685380:CDS | 55.0% | |
| GTGAAGGCCACAAAGGTAGC+CGG | - | chr4_4:49494453-49494472 | None:intergenic | 55.0% | |
| ACCTTTGTGGCCTTCACCAG+AGG | + | chr4_4:49494456-49494475 | Msa0685380:CDS | 55.0% | |
| TCCTCTGGTGAAGGCCACAA+AGG | - | chr4_4:49494460-49494479 | None:intergenic | 55.0% | |
| TTACGGGCTTCCTCTGGTGA+AGG | - | chr4_4:49494469-49494488 | None:intergenic | 55.0% | |
| CAAGGTCAGTGATGTGGAGC+TGG | + | chr4_4:49494525-49494544 | Msa0685380:CDS | 55.0% | |
| ATGCTTCTGCTCTCTCCCTG+TGG | + | chr4_4:49494578-49494597 | Msa0685380:CDS | 55.0% | |
| !! | GGTGCTGGTGATTCCTTCGT+TGG | + | chr4_4:49495449-49495468 | Msa0685380:CDS | 55.0% |
| !! | AGGGAAGCGTTGGAGGCCAT+TGG | - | chr4_4:49492634-49492653 | None:intergenic | 60.0% |
| GCTGACGATGAGACTGGAGC+CGG | - | chr4_4:49492668-49492687 | None:intergenic | 60.0% | |
| GCCGAAGCTGACGATGAGAC+TGG | - | chr4_4:49492674-49492693 | None:intergenic | 60.0% | |
| AGCTTCAGCAAGGGAGACGC+CGG | - | chr4_4:49492728-49492747 | None:intergenic | 60.0% | |
| GTCTCCCTTGCTGAAGCTCC+CGG | + | chr4_4:49492730-49492749 | Msa0685380:CDS | 60.0% | |
| GGAAACCGGGAGCTTCAGCA+AGG | - | chr4_4:49492738-49492757 | None:intergenic | 60.0% | |
| !! | ACCGGGGGCTTTGAGGAAAC+CGG | - | chr4_4:49492752-49492771 | None:intergenic | 60.0% |
| ACAGCGATCGCGACGTTAGC+GGG | - | chr4_4:49492781-49492800 | None:intergenic | 60.0% | |
| !! | CAAAGGCGCTCGTACTGCAC+TGG | + | chr4_4:49492918-49492937 | Msa0685380:CDS | 60.0% |
| TTTCCATGCGGTGGGTCCCT+AGG | + | chr4_4:49493157-49493176 | Msa0685380:intron | 60.0% | |
| AAGGCCACAAAGGTAGCCGG+AGG | - | chr4_4:49494450-49494469 | None:intergenic | 60.0% | |
| GCCCAACAGAGCTCCAACGA+AGG | - | chr4_4:49495465-49495484 | None:intergenic | 60.0% | |
| ATGAGACTGGAGCCGGTGGC+GGG | - | chr4_4:49492661-49492680 | None:intergenic | 65.0% | |
| GATGAGACTGGAGCCGGTGG+CGG | - | chr4_4:49492662-49492681 | None:intergenic | 65.0% | |
| GACGATGAGACTGGAGCCGG+TGG | - | chr4_4:49492665-49492684 | None:intergenic | 65.0% | |
| GGGAGACGCCGGAAGTGGTT+GGG | - | chr4_4:49492717-49492736 | None:intergenic | 65.0% | |
| AGGGAGACGCCGGAAGTGGT+TGG | - | chr4_4:49492718-49492737 | None:intergenic | 65.0% | |
| AGCAAGGGAGACGCCGGAAG+TGG | - | chr4_4:49492722-49492741 | None:intergenic | 65.0% | |
| !! | CCGGGGGCTTTGAGGAAACC+GGG | - | chr4_4:49492751-49492770 | None:intergenic | 65.0% |
| CCCGGTTTCCTCAAAGCCCC+CGG | + | chr4_4:49492748-49492767 | Msa0685380:CDS | 65.0% | |
| GGTTTCCTCAAAGCCCCCGG+TGG | + | chr4_4:49492751-49492770 | Msa0685380:CDS | 65.0% | |
| GTCAGCCACAGCCCTGAGCA+AGG | - | chr4_4:49493323-49493342 | None:intergenic | 65.0% | |
| !! | GGGGAGGAGGGAAGCGTTGG+AGG | - | chr4_4:49492641-49492660 | None:intergenic | 70.0% |
| TGAGACTGGAGCCGGTGGCG+GGG | - | chr4_4:49492660-49492679 | None:intergenic | 70.0% | |
| !! | ACGTTAGCGGGAGCGCCACC+GGG | - | chr4_4:49492769-49492788 | None:intergenic | 70.0% |
| !! | GACGTTAGCGGGAGCGCCAC+CGG | - | chr4_4:49492770-49492789 | None:intergenic | 70.0% |
| CCACCTAGGGACCCACCGCA+TGG | - | chr4_4:49493163-49493182 | None:intergenic | 70.0% | |
| CCATGCGGTGGGTCCCTAGG+TGG | + | chr4_4:49493160-49493179 | Msa0685380:intron | 70.0% | |
| ! | GGCGGGGAGGAGGGAAGCGT+TGG | - | chr4_4:49492644-49492663 | None:intergenic | 75.0% |
| GCTTCCCTCCTCCCCGCCAC+CGG | + | chr4_4:49492646-49492665 | Msa0685380:CDS | 75.0% | |
| GAGCGCCACCGGGGGCTTTG+AGG | - | chr4_4:49492759-49492778 | None:intergenic | 75.0% | |
| !! | GTTAGCGGGAGCGCCACCGG+GGG | - | chr4_4:49492767-49492786 | None:intergenic | 75.0% |
| !! | CGTTAGCGGGAGCGCCACCG+GGG | - | chr4_4:49492768-49492787 | None:intergenic | 75.0% |
| !!! | GGAGCCGGTGGCGGGGAGGA+GGG | - | chr4_4:49492653-49492672 | None:intergenic | 80.0% |
| !!! | TGGAGCCGGTGGCGGGGAGG+AGG | - | chr4_4:49492654-49492673 | None:intergenic | 80.0% |
| !!! | GACTGGAGCCGGTGGCGGGG+AGG | - | chr4_4:49492657-49492676 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49492532 | 49496089 | 49492532 | ID=Msa0685380;Name=Msa0685380 |
| chr4_4 | mRNA | 49492532 | 49496089 | 49492532 | ID=Msa0685380-mRNA-1;Parent=Msa0685380;Name=Msa0685380-mRNA-1;_AED=0.03;_eAED=0.03;_QI=102|1|1|1|1|1|4|322|331 |
| chr4_4 | exon | 49492532 | 49493050 | 49492532 | ID=Msa0685380-mRNA-1:exon:12465;Parent=Msa0685380-mRNA-1 |
| chr4_4 | exon | 49494331 | 49494663 | 49494331 | ID=Msa0685380-mRNA-1:exon:12466;Parent=Msa0685380-mRNA-1 |
| chr4_4 | exon | 49495398 | 49495514 | 49495398 | ID=Msa0685380-mRNA-1:exon:12467;Parent=Msa0685380-mRNA-1 |
| chr4_4 | exon | 49495639 | 49496089 | 49495639 | ID=Msa0685380-mRNA-1:exon:12468;Parent=Msa0685380-mRNA-1 |
| chr4_4 | five_prime_UTR | 49492532 | 49492633 | 49492532 | ID=Msa0685380-mRNA-1:five_prime_utr;Parent=Msa0685380-mRNA-1 |
| chr4_4 | CDS | 49492634 | 49493050 | 49492634 | ID=Msa0685380-mRNA-1:cds;Parent=Msa0685380-mRNA-1 |
| chr4_4 | CDS | 49494331 | 49494663 | 49494331 | ID=Msa0685380-mRNA-1:cds;Parent=Msa0685380-mRNA-1 |
| chr4_4 | CDS | 49495398 | 49495514 | 49495398 | ID=Msa0685380-mRNA-1:cds;Parent=Msa0685380-mRNA-1 |
| chr4_4 | CDS | 49495639 | 49495767 | 49495639 | ID=Msa0685380-mRNA-1:cds;Parent=Msa0685380-mRNA-1 |
| chr4_4 | three_prime_UTR | 49495768 | 49496089 | 49495768 | ID=Msa0685380-mRNA-1:three_prime_utr;Parent=Msa0685380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
