AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259330 MtrunA17_Chr2g0322151 97.500 360 9 0 1 360 1 360 0.0 727
Msa0259330 MtrunA17_Chr1g0184291 57.500 360 152 1 1 359 1 360 8.40e-156 442
Msa0259330 MtrunA17_Chr2g0328911 38.750 320 187 2 39 355 431 744 1.31e-68 229
Msa0259330 MtrunA17_Chr4g0031981 28.571 252 142 8 110 344 558 788 2.51e-15 77.4
Msa0259330 MtrunA17_Chr2g0328601 31.613 155 91 3 200 344 626 775 1.23e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259330 AT3G44160.1 76.667 360 84 0 1 360 1 360 0.0 577
Msa0259330 AT3G48620.1 57.383 298 79 4 108 360 25 319 5.99e-103 306
Msa0259330 AT5G19620.1 40.625 320 181 2 39 355 415 728 5.10e-70 233
Msa0259330 AT3G46740.1 28.352 261 147 9 102 344 564 802 8.12e-15 76.3
Msa0259330 AT4G09080.3 26.331 338 181 17 44 343 1 308 5.16e-12 66.6
Msa0259330 AT4G09080.2 26.488 336 185 16 43 343 82 390 6.68e-12 66.6
Msa0259330 AT4G09080.1 26.488 336 185 17 43 343 71 379 7.39e-12 66.6

Find 110 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCAACCTTCTGCGTTTA+AGG 0.112162 2_2:-56317750 None:intergenic
TCACTTCCACCAAATAAATT+TGG 0.134229 2_2:-56313424 None:intergenic
AATCCTCTTTCACTAGTAAT+TGG 0.162368 2_2:+56313142 Msa0259330:CDS
ATCAAACATCCAAATTTATT+TGG 0.180369 2_2:+56313415 Msa0259330:CDS
AAGCAAAGGACTCTCTATTT+TGG 0.205975 2_2:+56317702 Msa0259330:CDS
ATTCAGGTAATCCAGCTTTA+AGG 0.210991 2_2:+56317583 Msa0259330:intron
CTTCGATTTAAATCACAATT+TGG 0.233693 2_2:+56317645 Msa0259330:CDS
ATAGCGGTTGCTAAATTTCT+TGG 0.274871 2_2:+56317959 Msa0259330:three_prime_UTR
GGTGAAGGAGCAGTTGGTTC+TGG 0.281377 2_2:+56314831 Msa0259330:CDS
ATGCATTTCATATTGCTATA+TGG 0.287308 2_2:-56317860 None:intergenic
GAGCGGGAGAAATTGTTTAT+AGG 0.292776 2_2:-56313786 None:intergenic
ACGGGTTTGCTTTGACTTGC+AGG 0.317847 2_2:+56314087 Msa0259330:CDS
AAACAATTTCGTAAGAGGTT+TGG 0.342314 2_2:-56312811 None:intergenic
TCTGGTGTTGGATTGGGATA+TGG 0.346612 2_2:+56317621 Msa0259330:CDS
AGCGGGAGAAATTGTTTATA+GGG 0.372125 2_2:-56313785 None:intergenic
CACAACCAGCATAAAATTTG+AGG 0.383342 2_2:+56313887 Msa0259330:CDS
GTGAGAAGCTTGATGTTTCA+TGG 0.384645 2_2:+56313443 Msa0259330:CDS
TTACAGGTGGTTCAATCGTT+GGG 0.396160 2_2:+56314751 Msa0259330:CDS
CTCGGAAGTGTCCGAGGGTA+TGG 0.399077 2_2:+56314810 Msa0259330:CDS
TCGTAGCAACAAATTTAAAT+CGG 0.401389 2_2:-56314446 None:intergenic
ATTTGATGCTCAATACCTTC+AGG 0.409105 2_2:+56313027 Msa0259330:CDS
CCAGGATCTGGTGTTGGATT+GGG 0.413040 2_2:+56317615 Msa0259330:CDS
ACCAGGATCTGGTGTTGGAT+TGG 0.424729 2_2:+56317614 Msa0259330:CDS
ATCCTCTTTCACTAGTAATT+GGG 0.431742 2_2:+56313143 Msa0259330:CDS
CTCCCAATTACTAGTGAAAG+AGG 0.434708 2_2:-56313145 None:intergenic
GCAAATGAGTGCAAGTAGAT+TGG 0.439652 2_2:+56318008 Msa0259330:three_prime_UTR
TGGCAGTCCACATGACAGTA+TGG 0.439822 2_2:+56314189 Msa0259330:CDS
CGGACTGGTTATCTTGTACC+TGG 0.449059 2_2:+56315253 Msa0259330:CDS
TTTAAATTTGTTGCTACGAA+AGG 0.451134 2_2:+56314450 Msa0259330:CDS
ATTTATCTAGATTAACAGTT+GGG 0.453900 2_2:+56313826 Msa0259330:CDS
TGTTGTGTTTCGTAACGTTA+GGG 0.454371 2_2:-56312759 None:intergenic
GGTTTACCATGCCTTAAAGC+TGG 0.458468 2_2:-56317594 None:intergenic
ATTATCCACTTAGAAAGAAC+AGG 0.458623 2_2:-56314417 None:intergenic
AATTTCTCCCGCTCGGGAAG+TGG 0.463381 2_2:+56313795 Msa0259330:CDS
GTGTTGTGTTTCGTAACGTT+AGG 0.465781 2_2:-56312760 None:intergenic
GTGAAGGAGCAGTTGGTTCT+GGG 0.468959 2_2:+56314832 Msa0259330:CDS
ATCTAGATTAACAGTTGGGA+TGG 0.469448 2_2:+56313830 Msa0259330:CDS
TAGCGAACTGACTCTCCCTT+TGG 0.469738 2_2:+56314875 Msa0259330:CDS
AAACATCCAAATTTATTTGG+TGG 0.471379 2_2:+56313418 Msa0259330:CDS
AAGGCCACGGGAAGAATGTC+TGG 0.476302 2_2:+56313507 Msa0259330:CDS
ATACCATGGATTCCGATCTC+TGG 0.476671 2_2:-56313762 None:intergenic
TGGTTCAATCGTTGGGGACA+TGG 0.488806 2_2:+56314758 Msa0259330:CDS
GTATTCCTGTTCTTTCTAAG+TGG 0.494653 2_2:+56314412 Msa0259330:CDS
TCATCAGTCTTTCGTAGTGC+AGG 0.494808 2_2:+56313531 Msa0259330:CDS
TACACCTCCACTTCCCGAGC+GGG 0.498840 2_2:-56313802 None:intergenic
CTTACAGGTGGTTCAATCGT+TGG 0.500285 2_2:+56314750 Msa0259330:CDS
TTCACTATAGACTAAGATGT+TGG 0.504803 2_2:+56315195 Msa0259330:intron
AGGCATGGTAAACCAGGATC+TGG 0.504989 2_2:+56317603 Msa0259330:CDS
TGGATTGCGGAACAGATTTG+CGG 0.507880 2_2:+56315233 Msa0259330:CDS
ATGATGGTCGCAATATAAGC+AGG 0.509723 2_2:+56314057 Msa0259330:CDS
CCCAATCCAACACCAGATCC+TGG 0.509779 2_2:-56317615 None:intergenic
TGCGGAACAGATTTGCGGAC+TGG 0.512104 2_2:+56315238 Msa0259330:CDS
GACTAAGATGTTGGAAGGTG+CGG 0.512255 2_2:+56315204 Msa0259330:intron
CGACACAGATCTATAGAAGA+TGG 0.512840 2_2:+56317805 Msa0259330:three_prime_UTR
ATATAAGCAGGGATCGTGAC+GGG 0.513332 2_2:+56314069 Msa0259330:CDS
TATAAACAATTTCTCCCGCT+CGG 0.515264 2_2:+56313788 Msa0259330:CDS
AATTTATCTAGATTAACAGT+TGG 0.516713 2_2:+56313825 Msa0259330:CDS
ATAAACAATTTCTCCCGCTC+GGG 0.522046 2_2:+56313789 Msa0259330:CDS
CATTCTCTTTCACCAGAGAT+CGG 0.529149 2_2:+56313750 Msa0259330:CDS
GGTAATCCAGCTTTAAGGCA+TGG 0.530911 2_2:+56317588 Msa0259330:intron
TTCTCCCGCTCGGGAAGTGG+AGG 0.535594 2_2:+56313798 Msa0259330:CDS
TGAGAAGCTTGATGTTTCAT+GGG 0.536213 2_2:+56313444 Msa0259330:CDS
AATTGTAACCTTTGCCAGCA+TGG 0.537183 2_2:-56312884 None:intergenic
GCTACGAAAGGAATCAAACT+TGG 0.538847 2_2:+56314462 Msa0259330:CDS
TTGCGACCATCATCATTCAA+TGG 0.538986 2_2:-56314047 None:intergenic
CTTCTATAGATCTGTGTCGT+GGG 0.539404 2_2:-56317801 None:intergenic
TGGTTCTGGGAGATCATGCC+TGG 0.541615 2_2:+56314845 Msa0259330:CDS
GCTTTAAGGCATGGTAAACC+AGG 0.541848 2_2:+56317597 Msa0259330:CDS
GCTTGATGTTTCATGGGACA+AGG 0.545752 2_2:+56313450 Msa0259330:CDS
CTACTCCACTTTGAACTCAC+AGG 0.546959 2_2:-56313864 None:intergenic
ATGAAATCCTTAAACGCAGA+AGG 0.548952 2_2:+56317743 Msa0259330:exon
TCTTCTATAGATCTGTGTCG+TGG 0.552954 2_2:-56317802 None:intergenic
GACCAACACTTCTCTTGACA+AGG 0.557891 2_2:+56314484 Msa0259330:CDS
AACCTTGTCAAGAGAAGTGT+TGG 0.558580 2_2:-56314486 None:intergenic
TGGAGTACGAAGAAACGAAA+GGG 0.563563 2_2:+56312655 None:intergenic
AAGAGCATCCATGCTGGCAA+AGG 0.570469 2_2:+56312876 Msa0259330:CDS
CCAATGGAAAATGCTTGGTA+AGG 0.570469 2_2:-56314783 None:intergenic
CTATTAATGCATTTAAGCAA+AGG 0.572368 2_2:+56317688 Msa0259330:CDS
AACAGTTGGGATGGATCTGA+AGG 0.572536 2_2:+56313839 Msa0259330:CDS
AATTGTTTATAGGGATACCA+TGG 0.576485 2_2:-56313776 None:intergenic
GCTCAAAAGAGCATCCATGC+TGG 0.579159 2_2:+56312870 Msa0259330:CDS
AAAACAAAACAATCTTAAAG+TGG 0.580549 2_2:-56312735 None:intergenic
TCACCAGAGATCGGAATCCA+TGG 0.580861 2_2:+56313759 Msa0259330:CDS
CTCTTTCACTAGTAATTGGG+AGG 0.582217 2_2:+56313146 Msa0259330:CDS
CTGCTCCTTCACCATACCCT+CGG 0.582460 2_2:-56314821 None:intergenic
GTTCGTCCATTGAATGATGA+TGG 0.589877 2_2:+56314041 Msa0259330:CDS
CTTGATGTTTCATGGGACAA+GGG 0.592569 2_2:+56313451 Msa0259330:CDS
GGTAAACCAGGATCTGGTGT+TGG 0.594224 2_2:+56317609 Msa0259330:CDS
TTCATGAAGCAATGTTGCTG+AGG 0.605887 2_2:-56317725 None:intergenic
TCAGTTCGCTATTAGCCACC+AGG 0.607710 2_2:-56314863 None:intergenic
CTATATATATAATCTATCAA+AGG 0.610931 2_2:+56312786 Msa0259330:five_prime_UTR
CTATAGACTAAGATGTTGGA+AGG 0.611520 2_2:+56315199 Msa0259330:intron
AGTGTCCGAGGGTATGGTGA+AGG 0.614703 2_2:+56314816 Msa0259330:CDS
TACAGGTGGTTCAATCGTTG+GGG 0.618411 2_2:+56314752 Msa0259330:CDS
AATTGCTTATAGAAGGCCAC+GGG 0.629000 2_2:+56313495 Msa0259330:CDS
GGGTATGGTGAAGGAGCAGT+TGG 0.629254 2_2:+56314825 Msa0259330:CDS
ATGGAGTACGAAGAAACGAA+AGG 0.632157 2_2:+56312654 None:intergenic
TGAGCCAGACATTCTTCCCG+TGG 0.632310 2_2:-56313511 None:intergenic
TCCACATGCAAAATATAGCG+TGG 0.635411 2_2:-56317901 None:intergenic
TAATTGCTTATAGAAGGCCA+CGG 0.639514 2_2:+56313494 Msa0259330:CDS
GTTGTGTTTCGTAACGTTAG+GGG 0.639910 2_2:-56312758 None:intergenic
TTTAATCTTCAAATAGAACA+AGG 0.640667 2_2:+56314390 Msa0259330:CDS
AATATAAGCAGGGATCGTGA+CGG 0.648266 2_2:+56314068 Msa0259330:CDS
GCAAGAGTCTCAACACACAA+AGG 0.657145 2_2:+56314222 Msa0259330:CDS
TCGTCTGACAGACTTACAGG+TGG 0.660288 2_2:+56314738 Msa0259330:intron
TTCTGGGAGATCATGCCTGG+TGG 0.662291 2_2:+56314848 Msa0259330:CDS
AAGACTACCATACTGTCATG+TGG 0.666248 2_2:-56314196 None:intergenic
TGATGGTCGCAATATAAGCA+GGG 0.667139 2_2:+56314058 Msa0259330:CDS
AGGAACCTGTGAGTTCAAAG+TGG 0.684187 2_2:+56313859 Msa0259330:CDS
TTACACCTCCACTTCCCGAG+CGG 0.695775 2_2:-56313803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTATCATTTTATTTTA+TGG + chr2_2:56313583-56313602 Msa0259330:intron 10.0%
!!! TTGATAAATTATGAATTTTA+AGG + chr2_2:56314982-56315001 Msa0259330:intron 10.0%
!! CTATATATATAATCTATCAA+AGG + chr2_2:56312786-56312805 Msa0259330:five_prime_UTR 15.0%
!!! ACGAAATTGTTTTTATTTAA+TGG + chr2_2:56312822-56312841 Msa0259330:five_prime_UTR 15.0%
!!! AATTTGAATTTTTCTTTTAC+AGG + chr2_2:56313110-56313129 Msa0259330:intron 15.0%
!!! ATATTTTAATTGCTTATAGA+AGG + chr2_2:56313488-56313507 Msa0259330:CDS 15.0%
!! ATATAATCACATAGAAAATA+GGG - chr2_2:56314691-56314710 None:intergenic 15.0%
!! TATATAATCACATAGAAAAT+AGG - chr2_2:56314692-56314711 None:intergenic 15.0%
!!! CGGTTAAATATATTTATTTT+TGG + chr2_2:56315384-56315403 Msa0259330:intron 15.0%
!!! ATAGATTTTTCATTTCTTTA+GGG - chr2_2:56315544-56315563 None:intergenic 15.0%
!!! TATAGATTTTTCATTTCTTT+AGG - chr2_2:56315545-56315564 None:intergenic 15.0%
!! ATAAGATAATGATAAACTTT+GGG - chr2_2:56315709-56315728 None:intergenic 15.0%
!!! GTTTTTAAATATTTGCATAA+GGG - chr2_2:56315748-56315767 None:intergenic 15.0%
!! AATTAAAAAACATTCATTTG+AGG + chr2_2:56315887-56315906 Msa0259330:intron 15.0%
!! AATTAAAAAACATTCATTTG+AGG + chr2_2:56315887-56315906 Msa0259330:intron 15.0%
!!! TTATTATAGCTCTTATTTAA+AGG - chr2_2:56316417-56316436 None:intergenic 15.0%
!! AAAACAAAACAATCTTAAAG+TGG - chr2_2:56312738-56312757 None:intergenic 20.0%
!! AATAAAAACAATTTCGTAAG+AGG - chr2_2:56312819-56312838 None:intergenic 20.0%
!! AATTATTATTAGTGTCAGTA+TGG - chr2_2:56313244-56313263 None:intergenic 20.0%
!! TTACTCATTTACACAATTAT+GGG - chr2_2:56313365-56313384 None:intergenic 20.0%
!! ATCAAACATCCAAATTTATT+TGG + chr2_2:56313415-56313434 Msa0259330:CDS 20.0%
!!! ATTTTATTTTATGGTATGAG+AGG + chr2_2:56313592-56313611 Msa0259330:intron 20.0%
!!! GAAATAAACTTTTGTTTCAA+TGG + chr2_2:56313634-56313653 Msa0259330:intron 20.0%
!! AATTTATCTAGATTAACAGT+TGG + chr2_2:56313825-56313844 Msa0259330:CDS 20.0%
!! ATTTATCTAGATTAACAGTT+GGG + chr2_2:56313826-56313845 Msa0259330:CDS 20.0%
!!! CTTTACATTACTATTTGTTT+TGG + chr2_2:56313973-56313992 Msa0259330:intron 20.0%
!!! TTACTATTTGTTTTGGTTAT+AGG + chr2_2:56313980-56313999 Msa0259330:intron 20.0%
!! ATTTGAAGATTAAACTGAAA+AGG - chr2_2:56314384-56314403 None:intergenic 20.0%
!! TTTAATCTTCAAATAGAACA+AGG + chr2_2:56314390-56314409 Msa0259330:CDS 20.0%
!! AAATAGAATACATTAATGCT+TGG + chr2_2:56314594-56314613 Msa0259330:intron 20.0%
!! AATAGAATACATTAATGCTT+GGG + chr2_2:56314595-56314614 Msa0259330:intron 20.0%
!! AATGTGTATATGTTTAATTG+CGG - chr2_2:56315108-56315127 None:intergenic 20.0%
!! TGTTCAATTTAGCTATTTAA+TGG - chr2_2:56315449-56315468 None:intergenic 20.0%
!! GATAAGATAATGATAAACTT+TGG - chr2_2:56315710-56315729 None:intergenic 20.0%
!!! GGTTTTTAAATATTTGCATA+AGG - chr2_2:56315749-56315768 None:intergenic 20.0%
!! GAATTAAATTTCTGAGTTTA+TGG + chr2_2:56315774-56315793 Msa0259330:intron 20.0%
!! GTTTAAATAGCAAATTTGTA+TGG - chr2_2:56316357-56316376 None:intergenic 20.0%
!! ATCGGTATAAACTTTATAAA+TGG + chr2_2:56316487-56316506 Msa0259330:intron 20.0%
!! TCGGTATAAACTTTATAAAT+GGG + chr2_2:56316488-56316507 Msa0259330:intron 20.0%
!! ATTTATACCAGTTATACTTT+AGG + chr2_2:56316556-56316575 Msa0259330:intron 20.0%
!! TACTTAATTAAAGAACCTAA+AGG + chr2_2:56317043-56317062 Msa0259330:intron 20.0%
!! TAAAAAAAAAAGAAGGTTTG+AGG + chr2_2:56317221-56317240 Msa0259330:intron 20.0%
!!! TTTTAAAGACACTTTGTTTA+TGG + chr2_2:56317986-56318005 Msa0259330:three_prime_UTR 20.0%
!!! TTGATGCGTTTTTAATTGAA+TGG + chr2_2:56312845-56312864 Msa0259330:exon 25.0%
!!! TGATGCGTTTTTAATTGAAT+GGG + chr2_2:56312846-56312865 Msa0259330:exon 25.0%
!! GGTAAAATTTTCAGTTTGAT+CGG + chr2_2:56313167-56313186 Msa0259330:intron 25.0%
! GTTACTCATTTACACAATTA+TGG - chr2_2:56313366-56313385 None:intergenic 25.0%
! AAACATCCAAATTTATTTGG+TGG + chr2_2:56313418-56313437 Msa0259330:CDS 25.0%
! ATTCCTAGTTCCTATTTATA+TGG + chr2_2:56314298-56314317 Msa0259330:intron 25.0%
! TGGTTAATAGCCATATAAAT+AGG - chr2_2:56314311-56314330 None:intergenic 25.0%
! AATTCAGATACAAGACTAAT+TGG - chr2_2:56314331-56314350 None:intergenic 25.0%
! TCGTAGCAACAAATTTAAAT+CGG - chr2_2:56314449-56314468 None:intergenic 25.0%
!!! TTTAAATTTGTTGCTACGAA+AGG + chr2_2:56314450-56314469 Msa0259330:CDS 25.0%
! TGTAAATATTGCATACCAAA+GGG - chr2_2:56314893-56314912 None:intergenic 25.0%
! TTGTAAATATTGCATACCAA+AGG - chr2_2:56314894-56314913 None:intergenic 25.0%
! CTCAGAAATTTAATTCATAC+AGG - chr2_2:56315770-56315789 None:intergenic 25.0%
!!! AGAATTTTAATTCAGGTATC+GGG - chr2_2:56315814-56315833 None:intergenic 25.0%
!!! CAGAATTTTAATTCAGGTAT+CGG - chr2_2:56315815-56315834 None:intergenic 25.0%
!!! GGTTTTCAGAATTTTAATTC+AGG - chr2_2:56315821-56315840 None:intergenic 25.0%
! AAACGTAAATTGAGTTCATA+CGG - chr2_2:56315843-56315862 None:intergenic 25.0%
! TATAATGCCATGCATATATA+TGG - chr2_2:56315868-56315887 None:intergenic 25.0%
! TATAATGCCATGCATATATA+TGG - chr2_2:56315868-56315887 None:intergenic 25.0%
!!! TCTAGGAACCATTTTATTTA+AGG + chr2_2:56316212-56316231 Msa0259330:intron 25.0%
!!! CTAGGAACCATTTTATTTAA+GGG + chr2_2:56316213-56316232 Msa0259330:intron 25.0%
! AGACAAACCCTTAAATAAAA+TGG - chr2_2:56316223-56316242 None:intergenic 25.0%
!!! CTAATGAGGAACATTTTTTA+TGG - chr2_2:56316465-56316484 None:intergenic 25.0%
! CATAAAAAATGTTCCTCATT+AGG + chr2_2:56316463-56316482 Msa0259330:intron 25.0%
! CGGTATAAACTTTATAAATG+GGG + chr2_2:56316489-56316508 Msa0259330:intron 25.0%
! TATAAACTTTATAAATGGGG+CGG + chr2_2:56316492-56316511 Msa0259330:intron 25.0%
! GGTTCTTTAATTAAGTATGA+TGG - chr2_2:56317040-56317059 None:intergenic 25.0%
! TGTTAATCTCTTGAAAATTC+AGG + chr2_2:56317567-56317586 Msa0259330:intron 25.0%
! CTTCGATTTAAATCACAATT+TGG + chr2_2:56317645-56317664 Msa0259330:CDS 25.0%
! CTATTAATGCATTTAAGCAA+AGG + chr2_2:56317688-56317707 Msa0259330:CDS 25.0%
! ATGCATTTCATATTGCTATA+TGG - chr2_2:56317863-56317882 None:intergenic 25.0%
!! CTTTTCATTACAATTCATAG+CGG + chr2_2:56317943-56317962 Msa0259330:three_prime_UTR 25.0%
AAACAATTTCGTAAGAGGTT+TGG - chr2_2:56312814-56312833 None:intergenic 30.0%
AATCCTCTTTCACTAGTAAT+TGG + chr2_2:56313142-56313161 Msa0259330:CDS 30.0%
ATCCTCTTTCACTAGTAATT+GGG + chr2_2:56313143-56313162 Msa0259330:CDS 30.0%
ACGTCTTCAATATAAAGTGT+TGG + chr2_2:56313311-56313330 Msa0259330:intron 30.0%
TCACTTCCACCAAATAAATT+TGG - chr2_2:56313427-56313446 None:intergenic 30.0%
!! TGTTTCAATGGATTTTTCTG+TGG + chr2_2:56313646-56313665 Msa0259330:intron 30.0%
AATTGTTTATAGGGATACCA+TGG - chr2_2:56313779-56313798 None:intergenic 30.0%
! CATAAAATTTGAGGTTTGGA+CGG + chr2_2:56313896-56313915 Msa0259330:intron 30.0%
! ATAAAATTTGAGGTTTGGAC+GGG + chr2_2:56313897-56313916 Msa0259330:intron 30.0%
TAGCCATATAAATAGGAACT+AGG - chr2_2:56314304-56314323 None:intergenic 30.0%
ATTATCCACTTAGAAAGAAC+AGG - chr2_2:56314420-56314439 None:intergenic 30.0%
!! CTCTATTTCAGGTTGAAATT+AGG - chr2_2:56314665-56314684 None:intergenic 30.0%
AAATAGGGTAACTCTATTTC+AGG - chr2_2:56314676-56314695 None:intergenic 30.0%
TAACATGTGCTGAAAATTCA+CGG - chr2_2:56314960-56314979 None:intergenic 30.0%
TTCACTATAGACTAAGATGT+TGG + chr2_2:56315195-56315214 Msa0259330:intron 30.0%
AAATCGTTGGATGTAAATGT+TGG - chr2_2:56315358-56315377 None:intergenic 30.0%
!!! ATTTATTTTTGGTTCTGCTG+AGG + chr2_2:56315395-56315414 Msa0259330:intron 30.0%
AGCTATTTAATGGTACCAAT+GGG - chr2_2:56315439-56315458 None:intergenic 30.0%
TAGCTATTTAATGGTACCAA+TGG - chr2_2:56315440-56315459 None:intergenic 30.0%
ACAAAAAACAATAGGCTACA+TGG - chr2_2:56315499-56315518 None:intergenic 30.0%
GATTCAGGACAAAAAACAAT+AGG - chr2_2:56315507-56315526 None:intergenic 30.0%
GATTATATCACTCAAGATTC+AGG - chr2_2:56315522-56315541 None:intergenic 30.0%
TTTCTGTCAAAATGTGAGAA+TGG + chr2_2:56315567-56315586 Msa0259330:intron 30.0%
AACACTGCAAGCATAAATTA+AGG + chr2_2:56315646-56315665 Msa0259330:intron 30.0%
TATTTGCATAAGGGCTATTT+GGG - chr2_2:56315739-56315758 None:intergenic 30.0%
ATATTTGCATAAGGGCTATT+TGG - chr2_2:56315740-56315759 None:intergenic 30.0%
AACGTAAATTGAGTTCATAC+GGG - chr2_2:56315842-56315861 None:intergenic 30.0%
AGAGTATAACCATATGTGTA+AGG - chr2_2:56315913-56315932 None:intergenic 30.0%
TGCGTAAAATCTCCATTATA+TGG + chr2_2:56315969-56315988 Msa0259330:intron 30.0%
GCGTAAAATCTCCATTATAT+GGG + chr2_2:56315970-56315989 Msa0259330:intron 30.0%
ATTCCATCAAACCCATATAA+TGG - chr2_2:56315984-56316003 None:intergenic 30.0%
AGAGTATAACCATATGTGTA+AGG - chr2_2:56315913-56315932 None:intergenic 30.0%
TGCGTAAAATCTCCATTATA+TGG + chr2_2:56315969-56315988 Msa0259330:intron 30.0%
GCGTAAAATCTCCATTATAT+GGG + chr2_2:56315970-56315989 Msa0259330:intron 30.0%
ATTCCATCAAACCCATATAA+TGG - chr2_2:56315984-56316003 None:intergenic 30.0%
TATATGGGTTTGATGGAATA+AGG + chr2_2:56315985-56316004 Msa0259330:intron 30.0%
ATATGGGTTTGATGGAATAA+GGG + chr2_2:56316133-56316152 Msa0259330:intron 30.0%
! AGTTATAGTAGTTAGTCTCT+AGG + chr2_2:56316195-56316214 Msa0259330:intron 30.0%
!! TTTTATGGTCTACTAGTTTC+TGG - chr2_2:56316450-56316469 None:intergenic 30.0%
AAATGTTCCTCATTAGGTAT+CGG + chr2_2:56316469-56316488 Msa0259330:intron 30.0%
TGGTATAAATTAGCCAATGT+CGG - chr2_2:56316546-56316565 None:intergenic 30.0%
! ACTGTTTTCATAAGCTATCT+TGG + chr2_2:56316710-56316729 Msa0259330:intron 30.0%
!!! TTTACTTTCTACACCGATTT+TGG - chr2_2:56316974-56316993 None:intergenic 30.0%
AGTTTATTGCTTTGTCCTTT+AGG - chr2_2:56317061-56317080 None:intergenic 30.0%
AACAGAACATTACCCTTAAA+AGG + chr2_2:56317145-56317164 Msa0259330:intron 30.0%
ACAGAACATTACCCTTAAAA+GGG + chr2_2:56317146-56317165 Msa0259330:intron 30.0%
ATGACAAAAAACAGAAGTTG+TGG - chr2_2:56317444-56317463 None:intergenic 30.0%
! AGTACATTTGAAATGGTTTC+TGG - chr2_2:56317540-56317559 None:intergenic 30.0%
TGTTGTGTTTCGTAACGTTA+GGG - chr2_2:56312762-56312781 None:intergenic 35.0%
ATTTGATGCTCAATACCTTC+AGG + chr2_2:56313027-56313046 Msa0259330:CDS 35.0%
GAGCTGAGAAAAATGAATAG+AGG - chr2_2:56313058-56313077 None:intergenic 35.0%
ATTAGTGTCAGTATGGTGTT+TGG - chr2_2:56313237-56313256 None:intergenic 35.0%
TGAGAAGCTTGATGTTTCAT+GGG + chr2_2:56313444-56313463 Msa0259330:CDS 35.0%
TAATTGCTTATAGAAGGCCA+CGG + chr2_2:56313494-56313513 Msa0259330:CDS 35.0%
AGCGGGAGAAATTGTTTATA+GGG - chr2_2:56313788-56313807 None:intergenic 35.0%
TATAAACAATTTCTCCCGCT+CGG + chr2_2:56313788-56313807 Msa0259330:CDS 35.0%
ATCTAGATTAACAGTTGGGA+TGG + chr2_2:56313830-56313849 Msa0259330:CDS 35.0%
CACAACCAGCATAAAATTTG+AGG + chr2_2:56313887-56313906 Msa0259330:CDS 35.0%
! CCAAACCTCAAATTTTATGC+TGG - chr2_2:56313895-56313914 None:intergenic 35.0%
! CCAGCATAAAATTTGAGGTT+TGG + chr2_2:56313892-56313911 Msa0259330:intron 35.0%
CAAAGAAACACATGCAAACT+AGG - chr2_2:56313953-56313972 None:intergenic 35.0%
!! AGCCAAGGATTTTAGTATTC+CGG + chr2_2:56314111-56314130 Msa0259330:intron 35.0%
AACCGGAATACTAAAATCCT+TGG - chr2_2:56314116-56314135 None:intergenic 35.0%
!! CAGTTCGACATTTTGAAAAC+CGG - chr2_2:56314133-56314152 None:intergenic 35.0%
ATAGGAACTAGGAATCAAAC+TGG - chr2_2:56314293-56314312 None:intergenic 35.0%
GTATTCCTGTTCTTTCTAAG+TGG + chr2_2:56314412-56314431 Msa0259330:CDS 35.0%
CAATTAGAGAAGCAACAATG+CGG + chr2_2:56314559-56314578 Msa0259330:intron 35.0%
TAATGCTTGGGTTCACTAAT+AGG + chr2_2:56314607-56314626 Msa0259330:intron 35.0%
! CTTACCAAGCATTTTCCATT+GGG + chr2_2:56314784-56314803 Msa0259330:CDS 35.0%
! TTACCAAGCATTTTCCATTG+GGG + chr2_2:56314785-56314804 Msa0259330:CDS 35.0%
CTATAGACTAAGATGTTGGA+AGG + chr2_2:56315199-56315218 Msa0259330:intron 35.0%
GCAAAATGATATTACTCACC+AGG - chr2_2:56315274-56315293 None:intergenic 35.0%
!!! ACATCCAACGATTTTTAGCA+CGG + chr2_2:56315364-56315383 Msa0259330:intron 35.0%
TTAACCGTGCTAAAAATCGT+TGG - chr2_2:56315371-56315390 None:intergenic 35.0%
! TTAATGGTACCAATGGGTTT+AGG - chr2_2:56315433-56315452 None:intergenic 35.0%
TGTCAAAATGTGAGAATGGT+TGG + chr2_2:56315571-56315590 Msa0259330:intron 35.0%
AAAATGTGAGAATGGTTGGT+TGG + chr2_2:56315575-56315594 Msa0259330:intron 35.0%
!! TTGCAGTGTTTTTGCTAACT+CGG - chr2_2:56315636-56315655 None:intergenic 35.0%
ACTTACACCCATAAAAGATC+CGG + chr2_2:56315678-56315697 Msa0259330:intron 35.0%
TGATAAACTTTGGGTGTAAC+CGG - chr2_2:56315700-56315719 None:intergenic 35.0%
CGTTTGACCATATATATGCA+TGG + chr2_2:56315858-56315877 Msa0259330:intron 35.0%
TCTCCATTATATGGGTTTGA+TGG + chr2_2:56315978-56315997 Msa0259330:intron 35.0%
CGTTTGACCATATATATGCA+TGG + chr2_2:56315858-56315877 Msa0259330:intron 35.0%
TCTCCATTATATGGGTTTGA+TGG + chr2_2:56315978-56315997 Msa0259330:intron 35.0%
GTTTATACCGATACCTAATG+AGG - chr2_2:56316479-56316498 None:intergenic 35.0%
AACAGTGCCTAAAGTATAAC+TGG - chr2_2:56316566-56316585 None:intergenic 35.0%
GGAGAGAGCTTATGAAAAAT+TGG - chr2_2:56316791-56316810 None:intergenic 35.0%
! TTGTTGTGAGACTCTGATTT+TGG - chr2_2:56316857-56316876 None:intergenic 35.0%
!! GATTTTGGTCATTGCAATAG+CGG - chr2_2:56316959-56316978 None:intergenic 35.0%
GCTATTGCAATGACCAAAAT+CGG + chr2_2:56316958-56316977 Msa0259330:intron 35.0%
GACAGAACTGAACTAAAAGT+AGG + chr2_2:56317091-56317110 Msa0259330:intron 35.0%
GATATAGAGGAATAGCGTAA+TGG - chr2_2:56317369-56317388 None:intergenic 35.0%
TTGTCAATAGCACGATATAG+AGG - chr2_2:56317382-56317401 None:intergenic 35.0%
! GCATGAGAGTACATTTGAAA+TGG - chr2_2:56317547-56317566 None:intergenic 35.0%
ATTCAGGTAATCCAGCTTTA+AGG + chr2_2:56317583-56317602 Msa0259330:intron 35.0%
! AAGCAAAGGACTCTCTATTT+TGG + chr2_2:56317702-56317721 Msa0259330:CDS 35.0%
ATGAAATCCTTAAACGCAGA+AGG + chr2_2:56317743-56317762 Msa0259330:exon 35.0%
ATAGCGGTTGCTAAATTTCT+TGG + chr2_2:56317959-56317978 Msa0259330:three_prime_UTR 35.0%
GTTGTGTTTCGTAACGTTAG+GGG - chr2_2:56312761-56312780 None:intergenic 40.0%
GTGTTGTGTTTCGTAACGTT+AGG - chr2_2:56312763-56312782 None:intergenic 40.0%
AATTGTAACCTTTGCCAGCA+TGG - chr2_2:56312887-56312906 None:intergenic 40.0%
TGAATAGAGGTGAAACCTGA+AGG - chr2_2:56313045-56313064 None:intergenic 40.0%
CTCCCAATTACTAGTGAAAG+AGG - chr2_2:56313148-56313167 None:intergenic 40.0%
CTCTTTCACTAGTAATTGGG+AGG + chr2_2:56313146-56313165 Msa0259330:CDS 40.0%
!! TCGGTAGTGCATTTTGTTGT+CGG + chr2_2:56313186-56313205 Msa0259330:intron 40.0%
! GCTACATGTGTTGACGATAT+TGG + chr2_2:56313335-56313354 Msa0259330:intron 40.0%
GTGAGAAGCTTGATGTTTCA+TGG + chr2_2:56313443-56313462 Msa0259330:CDS 40.0%
CTTGATGTTTCATGGGACAA+GGG + chr2_2:56313451-56313470 Msa0259330:CDS 40.0%
AATTGCTTATAGAAGGCCAC+GGG + chr2_2:56313495-56313514 Msa0259330:CDS 40.0%
CATTCTCTTTCACCAGAGAT+CGG + chr2_2:56313750-56313769 Msa0259330:CDS 40.0%
GAGCGGGAGAAATTGTTTAT+AGG - chr2_2:56313789-56313808 None:intergenic 40.0%
ATAAACAATTTCTCCCGCTC+GGG + chr2_2:56313789-56313808 Msa0259330:CDS 40.0%
GTTCGTCCATTGAATGATGA+TGG + chr2_2:56314041-56314060 Msa0259330:CDS 40.0%
TTGCGACCATCATCATTCAA+TGG - chr2_2:56314050-56314069 None:intergenic 40.0%
ATGATGGTCGCAATATAAGC+AGG + chr2_2:56314057-56314076 Msa0259330:CDS 40.0%
TGATGGTCGCAATATAAGCA+GGG + chr2_2:56314058-56314077 Msa0259330:CDS 40.0%
AATATAAGCAGGGATCGTGA+CGG + chr2_2:56314068-56314087 Msa0259330:CDS 40.0%
GTGTACATTGCTTATTGCAG+TGG + chr2_2:56314169-56314188 Msa0259330:intron 40.0%
AAGACTACCATACTGTCATG+TGG - chr2_2:56314199-56314218 None:intergenic 40.0%
GCTACGAAAGGAATCAAACT+TGG + chr2_2:56314462-56314481 Msa0259330:CDS 40.0%
! AACCTTGTCAAGAGAAGTGT+TGG - chr2_2:56314489-56314508 None:intergenic 40.0%
AACACTTCTCTTGACAAGGT+TGG + chr2_2:56314488-56314507 Msa0259330:intron 40.0%
TGTAAGTCTGTCAGACGAAA+AGG - chr2_2:56314736-56314755 None:intergenic 40.0%
! TTTTCGTCTGACAGACTTAC+AGG + chr2_2:56314735-56314754 Msa0259330:intron 40.0%
TTACAGGTGGTTCAATCGTT+GGG + chr2_2:56314751-56314770 Msa0259330:CDS 40.0%
CCAATGGAAAATGCTTGGTA+AGG - chr2_2:56314786-56314805 None:intergenic 40.0%
! CCTTACCAAGCATTTTCCAT+TGG + chr2_2:56314783-56314802 Msa0259330:CDS 40.0%
! TACCAAGCATTTTCCATTGG+GGG + chr2_2:56314786-56314805 Msa0259330:CDS 40.0%
TTTCAAATCAGTCATGCACG+GGG - chr2_2:56315039-56315058 None:intergenic 40.0%
CTTTCAAATCAGTCATGCAC+GGG - chr2_2:56315040-56315059 None:intergenic 40.0%
GCTTTCAAATCAGTCATGCA+CGG - chr2_2:56315041-56315060 None:intergenic 40.0%
!!! TCATCTGCTTTCTTTTTCGG+AGG - chr2_2:56315085-56315104 None:intergenic 40.0%
! CGGTCATCTGCTTTCTTTTT+CGG - chr2_2:56315088-56315107 None:intergenic 40.0%
ATTCACAGGGATTTCATCTC+TGG - chr2_2:56315472-56315491 None:intergenic 40.0%
GCTACATGGAGATATTCACA+GGG - chr2_2:56315485-56315504 None:intergenic 40.0%
! GGTGTAACCGGATCTTTTAT+GGG - chr2_2:56315688-56315707 None:intergenic 40.0%
! CATTTGAGGCCTTACACATA+TGG + chr2_2:56315901-56315920 Msa0259330:intron 40.0%
! CATTTGAGGCCTTACACATA+TGG + chr2_2:56315901-56315920 Msa0259330:intron 40.0%
AAACTTTATAAATGGGGCGG+AGG + chr2_2:56316495-56316514 Msa0259330:intron 40.0%
TGCAACAAATGAACCGACAT+TGG + chr2_2:56316530-56316549 Msa0259330:intron 40.0%
AAGCACTTGCGAGATTGTTT+GGG - chr2_2:56316812-56316831 None:intergenic 40.0%
TAAGCACTTGCGAGATTGTT+TGG - chr2_2:56316813-56316832 None:intergenic 40.0%
! GTGAGACTCTGATTTTGGAT+TGG - chr2_2:56316852-56316871 None:intergenic 40.0%
! GTCAATTCGAGCCCTTTTAA+GGG - chr2_2:56317160-56317179 None:intergenic 40.0%
! TGTCAATTCGAGCCCTTTTA+AGG - chr2_2:56317161-56317180 None:intergenic 40.0%
! CTAAGTGCTATTGCTGACTA+TGG + chr2_2:56317308-56317327 Msa0259330:intron 40.0%
ATAGAGGAATAGCGTAATGG+TGG - chr2_2:56317366-56317385 None:intergenic 40.0%
TTCATGAAGCAATGTTGCTG+AGG - chr2_2:56317728-56317747 None:intergenic 40.0%
CTTCTATAGATCTGTGTCGT+GGG - chr2_2:56317804-56317823 None:intergenic 40.0%
TCTTCTATAGATCTGTGTCG+TGG - chr2_2:56317805-56317824 None:intergenic 40.0%
CGACACAGATCTATAGAAGA+TGG + chr2_2:56317805-56317824 Msa0259330:three_prime_UTR 40.0%
! TCCACGCTATATTTTGCATG+TGG + chr2_2:56317900-56317919 Msa0259330:three_prime_UTR 40.0%
TCCACATGCAAAATATAGCG+TGG - chr2_2:56317904-56317923 None:intergenic 40.0%
GCAAATGAGTGCAAGTAGAT+TGG + chr2_2:56318008-56318027 Msa0259330:three_prime_UTR 40.0%
!! CGGTAGTGCATTTTGTTGTC+GGG + chr2_2:56313187-56313206 Msa0259330:intron 45.0%
!! GGTAGTGCATTTTGTTGTCG+GGG + chr2_2:56313188-56313207 Msa0259330:intron 45.0%
!! GTAGTGCATTTTGTTGTCGG+GGG + chr2_2:56313189-56313208 Msa0259330:intron 45.0%
ATAGCCGCATGTGTCTTTGT+CGG + chr2_2:56313286-56313305 Msa0259330:intron 45.0%
GCTTGATGTTTCATGGGACA+AGG + chr2_2:56313450-56313469 Msa0259330:CDS 45.0%
TCATCAGTCTTTCGTAGTGC+AGG + chr2_2:56313531-56313550 Msa0259330:CDS 45.0%
ATGGTATGAGAGGTTCTGCT+AGG + chr2_2:56313602-56313621 Msa0259330:intron 45.0%
TGAAAGAGAATGCTGCAACG+GGG - chr2_2:56313742-56313761 None:intergenic 45.0%
GTGAAAGAGAATGCTGCAAC+GGG - chr2_2:56313743-56313762 None:intergenic 45.0%
GGTGAAAGAGAATGCTGCAA+CGG - chr2_2:56313744-56313763 None:intergenic 45.0%
ATACCATGGATTCCGATCTC+TGG - chr2_2:56313765-56313784 None:intergenic 45.0%
AACAGTTGGGATGGATCTGA+AGG + chr2_2:56313839-56313858 Msa0259330:CDS 45.0%
AGGAACCTGTGAGTTCAAAG+TGG + chr2_2:56313859-56313878 Msa0259330:CDS 45.0%
CTACTCCACTTTGAACTCAC+AGG - chr2_2:56313867-56313886 None:intergenic 45.0%
ATATAAGCAGGGATCGTGAC+GGG + chr2_2:56314069-56314088 Msa0259330:CDS 45.0%
GCAAGAGTCTCAACACACAA+AGG + chr2_2:56314222-56314241 Msa0259330:CDS 45.0%
GACCAACACTTCTCTTGACA+AGG + chr2_2:56314484-56314503 Msa0259330:CDS 45.0%
CTTACAGGTGGTTCAATCGT+TGG + chr2_2:56314750-56314769 Msa0259330:CDS 45.0%
TACAGGTGGTTCAATCGTTG+GGG + chr2_2:56314752-56314771 Msa0259330:CDS 45.0%
! ACCAAGCATTTTCCATTGGG+GGG + chr2_2:56314787-56314806 Msa0259330:CDS 45.0%
GACTAAGATGTTGGAAGGTG+CGG + chr2_2:56315204-56315223 Msa0259330:intron 45.0%
!! GTTGGAAGGTGCGGTTTTTA+TGG + chr2_2:56315213-56315232 Msa0259330:CDS 45.0%
!! GGTGCGGTTTTTATGGATTG+CGG + chr2_2:56315220-56315239 Msa0259330:CDS 45.0%
TGGATTGCGGAACAGATTTG+CGG + chr2_2:56315233-56315252 Msa0259330:CDS 45.0%
CTGAAACCACCTAAACCCAT+TGG + chr2_2:56315421-56315440 Msa0259330:intron 45.0%
! ATGGTACCAATGGGTTTAGG+TGG - chr2_2:56315430-56315449 None:intergenic 45.0%
GGCTACATGGAGATATTCAC+AGG - chr2_2:56315486-56315505 None:intergenic 45.0%
! TGAGAATGGTTGGTTGGAGT+AGG + chr2_2:56315581-56315600 Msa0259330:intron 45.0%
! GAGAATGGTTGGTTGGAGTA+GGG + chr2_2:56315582-56315601 Msa0259330:intron 45.0%
! AGGGATGGTCTGTTTTGTGT+TGG + chr2_2:56315605-56315624 Msa0259330:intron 45.0%
! GGGATGGTCTGTTTTGTGTT+GGG + chr2_2:56315606-56315625 Msa0259330:intron 45.0%
! GGGTGTAACCGGATCTTTTA+TGG - chr2_2:56315689-56315708 None:intergenic 45.0%
TCGCCCTGAAACTGTAATAG+CGG + chr2_2:56317248-56317267 Msa0259330:intron 45.0%
CGTCCGCTATTACAGTTTCA+GGG - chr2_2:56317254-56317273 None:intergenic 45.0%
!! TGAAACTGTAATAGCGGACG+CGG + chr2_2:56317254-56317273 Msa0259330:intron 45.0%
GTCAGCAATAGCACTTAGTG+CGG - chr2_2:56317306-56317325 None:intergenic 45.0%
GGAATAGCGTAATGGTGGTA+GGG - chr2_2:56317361-56317380 None:intergenic 45.0%
AGGAATAGCGTAATGGTGGT+AGG - chr2_2:56317362-56317381 None:intergenic 45.0%
!! GGTAATCCAGCTTTAAGGCA+TGG + chr2_2:56317588-56317607 Msa0259330:intron 45.0%
GGTTTACCATGCCTTAAAGC+TGG - chr2_2:56317597-56317616 None:intergenic 45.0%
!! GCTTTAAGGCATGGTAAACC+AGG + chr2_2:56317597-56317616 Msa0259330:CDS 45.0%
! TCTGGTGTTGGATTGGGATA+TGG + chr2_2:56317621-56317640 Msa0259330:CDS 45.0%
TCTGCAACCTTCTGCGTTTA+AGG - chr2_2:56317753-56317772 None:intergenic 45.0%
!!! TCAATTTTTTTTTATAATAA+CGG + chr2_2:56313081-56313100 Msa0259330:intron 5.0%
!!! TTTTTTTTAAAAAAAAAAGA+AGG + chr2_2:56317214-56317233 Msa0259330:intron 5.0%
!! GCTCAAAAGAGCATCCATGC+TGG + chr2_2:56312870-56312889 Msa0259330:CDS 50.0%
!! AAGAGCATCCATGCTGGCAA+AGG + chr2_2:56312876-56312895 Msa0259330:CDS 50.0%
GTGTCCGACAAAGACACATG+CGG - chr2_2:56313293-56313312 None:intergenic 50.0%
CAGTCTTTCGTAGTGCAGGT+TGG + chr2_2:56313535-56313554 Msa0259330:intron 50.0%
TGAGAGGTTCTGCTAGGCAA+TGG + chr2_2:56313608-56313627 Msa0259330:intron 50.0%
TCACCAGAGATCGGAATCCA+TGG + chr2_2:56313759-56313778 Msa0259330:CDS 50.0%
!! ACGGGTTTGCTTTGACTTGC+AGG + chr2_2:56314087-56314106 Msa0259330:CDS 50.0%
!! CTTTGACTTGCAGGTAGCCA+AGG + chr2_2:56314096-56314115 Msa0259330:intron 50.0%
TGGCAGTCCACATGACAGTA+TGG + chr2_2:56314189-56314208 Msa0259330:CDS 50.0%
GTCTGTCAGACGAAAAGGCA+TGG - chr2_2:56314731-56314750 None:intergenic 50.0%
TCGTCTGACAGACTTACAGG+TGG + chr2_2:56314738-56314757 Msa0259330:intron 50.0%
TGGTTCAATCGTTGGGGACA+TGG + chr2_2:56314758-56314777 Msa0259330:CDS 50.0%
! GTGAAGGAGCAGTTGGTTCT+GGG + chr2_2:56314832-56314851 Msa0259330:CDS 50.0%
TCAGTTCGCTATTAGCCACC+AGG - chr2_2:56314866-56314885 None:intergenic 50.0%
! TAGCGAACTGACTCTCCCTT+TGG + chr2_2:56314875-56314894 Msa0259330:CDS 50.0%
!! CGGACTGGTTATCTTGTACC+TGG + chr2_2:56315253-56315272 Msa0259330:CDS 50.0%
! AATGGTTGGTTGGAGTAGGG+AGG + chr2_2:56315585-56315604 Msa0259330:intron 50.0%
! ATGGTTGGTTGGAGTAGGGA+GGG + chr2_2:56315586-56315605 Msa0259330:intron 50.0%
TCTGCTGTACCGCTATAGGT+CGG - chr2_2:56316925-56316944 None:intergenic 50.0%
GCTATCTGCTGTACCGCTAT+AGG - chr2_2:56316929-56316948 None:intergenic 50.0%
ATAGCGGTACAGCAGATAGC+AGG + chr2_2:56316929-56316948 Msa0259330:intron 50.0%
GCGTCCGCTATTACAGTTTC+AGG - chr2_2:56317255-56317274 None:intergenic 50.0%
! CTATTGCTGACTATGGCTCG+TGG + chr2_2:56317315-56317334 Msa0259330:intron 50.0%
AGCGTAATGGTGGTAGGGTT+CGG - chr2_2:56317356-56317375 None:intergenic 50.0%
AGGCATGGTAAACCAGGATC+TGG + chr2_2:56317603-56317622 Msa0259330:CDS 50.0%
GGTAAACCAGGATCTGGTGT+TGG + chr2_2:56317609-56317628 Msa0259330:CDS 50.0%
! ACCAGGATCTGGTGTTGGAT+TGG + chr2_2:56317614-56317633 Msa0259330:CDS 50.0%
! CCAGGATCTGGTGTTGGATT+GGG + chr2_2:56317615-56317634 Msa0259330:CDS 50.0%
AAGGCCACGGGAAGAATGTC+TGG + chr2_2:56313507-56313526 Msa0259330:CDS 55.0%
TGAGCCAGACATTCTTCCCG+TGG - chr2_2:56313514-56313533 None:intergenic 55.0%
AATTTCTCCCGCTCGGGAAG+TGG + chr2_2:56313795-56313814 Msa0259330:CDS 55.0%
TTACACCTCCACTTCCCGAG+CGG - chr2_2:56313806-56313825 None:intergenic 55.0%
AAGGTTGTGCGCTCAGTCAG+TGG - chr2_2:56314365-56314384 None:intergenic 55.0%
GCCCCCCAATGGAAAATGCT+TGG - chr2_2:56314791-56314810 None:intergenic 55.0%
! GCATTTTCCATTGGGGGGCT+CGG + chr2_2:56314792-56314811 Msa0259330:CDS 55.0%
! AGTGTCCGAGGGTATGGTGA+AGG + chr2_2:56314816-56314835 Msa0259330:CDS 55.0%
CTGCTCCTTCACCATACCCT+CGG - chr2_2:56314824-56314843 None:intergenic 55.0%
GGGTATGGTGAAGGAGCAGT+TGG + chr2_2:56314825-56314844 Msa0259330:CDS 55.0%
! GGTGAAGGAGCAGTTGGTTC+TGG + chr2_2:56314831-56314850 Msa0259330:CDS 55.0%
!! TGGTTCTGGGAGATCATGCC+TGG + chr2_2:56314845-56314864 Msa0259330:CDS 55.0%
! TTCTGGGAGATCATGCCTGG+TGG + chr2_2:56314848-56314867 Msa0259330:CDS 55.0%
TGCGGAACAGATTTGCGGAC+TGG + chr2_2:56315238-56315257 Msa0259330:CDS 55.0%
TTGGTTGGAGTAGGGAGGGA+TGG + chr2_2:56315590-56315609 Msa0259330:intron 55.0%
GGGAGCTTCAGTGTCAATGC+AGG + chr2_2:56316153-56316172 Msa0259330:intron 55.0%
! GGTGCTATGCGACGCTATCT+GGG - chr2_2:56316904-56316923 None:intergenic 55.0%
!! CGCATAGCACCGACCTATAG+CGG + chr2_2:56316913-56316932 Msa0259330:intron 55.0%
!! TGTAATAGCGGACGCGGTAG+CGG + chr2_2:56317260-56317279 Msa0259330:intron 55.0%
CCCAATCCAACACCAGATCC+TGG - chr2_2:56317618-56317637 None:intergenic 55.0%
TACACCTCCACTTCCCGAGC+GGG - chr2_2:56313805-56313824 None:intergenic 60.0%
!! CTCGGAAGTGTCCGAGGGTA+TGG + chr2_2:56314810-56314829 Msa0259330:CDS 60.0%
!! CGGTGCTATGCGACGCTATC+TGG - chr2_2:56316905-56316924 None:intergenic 60.0%
TTCTCCCGCTCGGGAAGTGG+AGG + chr2_2:56313798-56313817 Msa0259330:CDS 65.0%
GACACTTCCGAGCCCCCCAA+TGG - chr2_2:56314802-56314821 None:intergenic 65.0%
!! GGGGGCTCGGAAGTGTCCGA+GGG + chr2_2:56314805-56314824 Msa0259330:CDS 70.0%
! GCGGACGCGGTAGCGGTTTG+TGG + chr2_2:56317267-56317286 Msa0259330:intron 70.0%
!! GGGGGGCTCGGAAGTGTCCG+AGG + chr2_2:56314804-56314823 Msa0259330:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56312663 56318032 56312663 ID=Msa0259330;Name=Msa0259330
chr2_2 mRNA 56312663 56318032 56312663 ID=Msa0259330-mRNA-1;Parent=Msa0259330;Name=Msa0259330-mRNA-1;_AED=0.12;_eAED=0.12;_QI=201|1|1|1|1|1|11|286|360
chr2_2 exon 56312663 56312897 56312663 ID=Msa0259330-mRNA-1:exon:17017;Parent=Msa0259330-mRNA-1
chr2_2 exon 56312982 56313048 56312982 ID=Msa0259330-mRNA-1:exon:17018;Parent=Msa0259330-mRNA-1
chr2_2 exon 56313132 56313167 56313132 ID=Msa0259330-mRNA-1:exon:17019;Parent=Msa0259330-mRNA-1
chr2_2 exon 56313408 56313552 56313408 ID=Msa0259330-mRNA-1:exon:17020;Parent=Msa0259330-mRNA-1
chr2_2 exon 56313750 56313908 56313750 ID=Msa0259330-mRNA-1:exon:17021;Parent=Msa0259330-mRNA-1
chr2_2 exon 56314038 56314108 56314038 ID=Msa0259330-mRNA-1:exon:17022;Parent=Msa0259330-mRNA-1
chr2_2 exon 56314189 56314267 56314189 ID=Msa0259330-mRNA-1:exon:17023;Parent=Msa0259330-mRNA-1
chr2_2 exon 56314390 56314505 56314390 ID=Msa0259330-mRNA-1:exon:17024;Parent=Msa0259330-mRNA-1
chr2_2 exon 56314749 56314896 56314749 ID=Msa0259330-mRNA-1:exon:17025;Parent=Msa0259330-mRNA-1
chr2_2 exon 56315205 56315274 56315205 ID=Msa0259330-mRNA-1:exon:17026;Parent=Msa0259330-mRNA-1
chr2_2 exon 56317589 56318032 56317589 ID=Msa0259330-mRNA-1:exon:17027;Parent=Msa0259330-mRNA-1
chr2_2 five_prime_UTR 56312663 56312863 56312663 ID=Msa0259330-mRNA-1:five_prime_utr;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56312864 56312897 56312864 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56312982 56313048 56312982 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56313132 56313167 56313132 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56313408 56313552 56313408 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56313750 56313908 56313750 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56314038 56314108 56314038 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56314189 56314267 56314189 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56314390 56314505 56314390 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56314749 56314896 56314749 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56315205 56315274 56315205 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 CDS 56317589 56317746 56317589 ID=Msa0259330-mRNA-1:cds;Parent=Msa0259330-mRNA-1
chr2_2 three_prime_UTR 56317747 56318032 56317747 ID=Msa0259330-mRNA-1:three_prime_utr;Parent=Msa0259330-mRNA-1
Gene Sequence

>Msa0259330

ATGGGAGCTCAAAAGAGCATCCATGCTGGCAAAGCAAAGATTGATGTTAATGTTGATTTTACTCACAAGCTTTGTACTTATTTGATGCTCAATACCTTCAGGAGTGATGACAATCCTCTTTCACTAGTAATTGGGAGTCTTTGTATCAAACATCCAAATTTATTTGGTGGAAGTGAGAAGCTTGATGTTTCATGGGACAAGGGTTTGTATGATTCGAATATTTTAATTGCTTATAGAAGGCCACGGGAAGAATGTCTGGCTCATCAGTCTTTCGTAGTGCAGCATTCTCTTTCACCAGAGATCGGAATCCATGGTATCCCTATAAACAATTTCTCCCGCTCGGGAAGTGGAGGTGTAAATTTATCTAGATTAACAGTTGGGATGGATCTGAAGGAACCTGTGAGTTCAAAGTGGAGTAGCACAACCAGCATAAAATTTGAGCATGTTCGTCCATTGAATGATGATGGTCGCAATATAAGCAGGGATCGTGACGGGTTTGCTTTGACTTGCAGTGGCAGTCCACATGACAGTATGGTAGTCTTAAAGCAAGAGTCTCAACACACAAAGGCAAACGATCGTAGCTTTTTTCATTTTAATCTTCAAATAGAACAAGGTATTCCTGTTCTTTCTAAGTGGATAATTTTCAACCGATTTAAATTTGTTGCTACGAAAGGAATCAAACTTGGACCAACACTTCTCTTGACAAGACTTACAGGTGGTTCAATCGTTGGGGACATGGCTCCTTACCAAGCATTTTCCATTGGGGGGCTCGGAAGTGTCCGAGGGTATGGTGAAGGAGCAGTTGGTTCTGGGAGATCATGCCTGGTGGCTAATAGCGAACTGACTCTCCCTTTGACTAAGATGTTGGAAGGTGCGGTTTTTATGGATTGCGGAACAGATTTGCGGACTGGTTATCTTGTACCTGGTAATCCAGCTTTAAGGCATGGTAAACCAGGATCTGGTGTTGGATTGGGATATGGACTTCGATTTAAATCACAATTTGGTCATTTTCAAGTTGATTATGCTATTAATGCATTTAAGCAAAGGACTCTCTATTTTGGCCTCAGCAACATTGCTTCATGA

Protein sequence

>Msa0259330

MGAQKSIHAGKAKIDVNVDFTHKLCTYLMLNTFRSDDNPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILIAYRRPREECLAHQSFVVQHSLSPEIGIHGIPINNFSRSGSGGVNLSRLTVGMDLKEPVSSKWSSTTSIKFEHVRPLNDDGRNISRDRDGFALTCSGSPHDSMVVLKQESQHTKANDRSFFHFNLQIEQGIPVLSKWIIFNRFKFVATKGIKLGPTLLLTRLTGGSIVGDMAPYQAFSIGGLGSVRGYGEGAVGSGRSCLVANSELTLPLTKMLEGAVFMDCGTDLRTGYLVPGNPALRHGKPGSGVGLGYGLRFKSQFGHFQVDYAINAFKQRTLYFGLSNIAS*