AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0624730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624730 MtrunA17_Chr4g0017231 91.234 308 2 4 1 285 1 306 0.0 549
Msa0624730 MtrunA17_Chr2g0305051 47.773 247 124 2 29 272 34 278 9.72e-69 223
Msa0624730 MtrunA17_Chr4g0057771 37.173 191 109 4 90 270 53 242 5.84e-36 129
Msa0624730 MtrunA17_Chr1g0181801 29.885 174 101 4 91 246 136 306 8.69e-17 79.3
Msa0624730 MtrunA17_Chr7g0263541 29.310 174 102 4 91 246 61 231 5.67e-16 75.9
Msa0624730 MtrunA17_Chr8g0337051 34.906 106 60 3 89 190 44 144 2.20e-15 73.2
Msa0624730 MtrunA17_Chr4g0018221 25.698 179 103 4 90 265 78 229 4.99e-12 64.3
Msa0624730 MtrunA17_Chr5g0428971 25.140 179 104 4 90 265 55 206 7.06e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624730 AT5G47840.1 76.020 196 47 0 90 285 88 283 9.46e-109 317
Msa0624730 AT5G47840.2 70.408 196 44 1 90 285 88 269 7.34e-98 288
Msa0624730 AT5G35170.1 56.150 187 82 0 90 276 103 289 5.24e-70 227
Msa0624730 AT5G35170.2 56.150 187 82 0 90 276 103 289 5.85e-70 226
Msa0624730 AT5G63400.1 34.896 192 114 4 89 270 56 246 3.42e-33 122
Msa0624730 AT5G50370.1 33.333 165 101 3 89 245 57 220 2.12e-29 112
Msa0624730 AT5G50370.2 33.750 160 97 3 90 241 58 216 4.60e-28 108
Msa0624730 AT5G63400.2 38.235 136 79 2 89 220 56 190 1.21e-27 106
Msa0624730 AT2G37250.1 28.251 223 138 5 42 246 28 246 6.51e-19 84.7
Msa0624730 AT2G39270.1 31.395 172 101 3 91 246 89 259 1.10e-17 81.6
Msa0624730 AT5G26667.1 35.849 106 59 3 89 190 37 137 6.59e-16 75.1
Msa0624730 AT5G26667.3 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0624730 AT5G26667.2 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0624730 AT5G26667.4 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0624730 AT3G60180.1 25.806 217 121 5 52 265 17 196 2.16e-13 68.2
Msa0624730 AT3G60180.2 25.806 217 121 5 52 265 17 196 2.16e-13 68.2
Msa0624730 AT4G25280.1 31.304 115 76 2 90 203 77 189 7.74e-13 67.4
Msa0624730 AT4G25280.2 31.304 115 76 2 90 203 77 189 7.74e-13 67.4

Find 79 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTTCCTCCCTGTTAC+TGG 0.196331 4_3:-3435501 Msa0624730:three_prime_UTR
TTATGATTATGATTATTATT+TGG 0.225692 4_3:+3440584 None:intergenic
CAATAATGATATACAGAAAA+TGG 0.248233 4_3:+3435455 None:intergenic
GCTACTGCACTTAAGGAGTT+AGG 0.300266 4_3:-3438622 Msa0624730:CDS
AAAGGATATATAATATAATA+TGG 0.304977 4_3:-3440743 None:intergenic
ATTGAAACCGGAAGTGAAAA+TGG 0.306531 4_3:-3438872 Msa0624730:CDS
TGTAGAGAATGGTTGGCTTT+TGG 0.314777 4_3:-3438671 Msa0624730:CDS
GAAAGCTTCTTCAGAATCTA+TGG 0.334801 4_3:-3435753 Msa0624730:CDS
CGAGTCATAGTTTGTTGGTT+TGG 0.336884 4_3:-3435518 Msa0624730:three_prime_UTR
CCAAAGGAAATAAAAGAATA+AGG 0.336928 4_3:-3435412 Msa0624730:three_prime_UTR
GTATAAAGATATAACAATTA+AGG 0.337775 4_3:-3437202 Msa0624730:intron
GCATATGAACCACCAGTAAC+AGG 0.349980 4_3:+3435489 None:intergenic
TTATGATTATTATTTGGAAT+TGG 0.350423 4_3:+3440590 None:intergenic
ATTCTTGTGGAGAGAGTAGT+TGG 0.351960 4_3:-3437557 Msa0624730:CDS
TGATATATCTTCCCAGTAAC+AGG 0.355623 4_3:+3437521 None:intergenic
AGGAGATTAGATCCTGTTAC+TGG 0.364620 4_3:-3437533 Msa0624730:CDS
TCTAGAAGAATGAAAATATC+AGG 0.368176 4_3:+3438592 None:intergenic
GAAGTATTTGCTCAAATTGA+TGG 0.377927 4_3:-3435803 Msa0624730:CDS
ATCACAGGCTACTGCACTTA+AGG 0.378525 4_3:-3438629 Msa0624730:CDS
TTCTTCATCATCTTCTTTGA+AGG 0.383124 4_3:-3440624 Msa0624730:CDS
CAACCATTCTCTACAGAATC+TGG 0.393081 4_3:+3438679 None:intergenic
AAAGCGTGCGAAAGAATATA+TGG 0.409628 4_3:-3438849 Msa0624730:CDS
TTGCTGCTGGAGATTTACTT+AGG 0.410112 4_3:-3438901 Msa0624730:CDS
TTGATAGTACAAAGTTGTAT+TGG 0.411071 4_3:-3435593 Msa0624730:three_prime_UTR
CTACTGCACTTAAGGAGTTA+GGG 0.424190 4_3:-3438621 Msa0624730:CDS
ACCATGACAACTATTTCATC+AGG 0.443004 4_3:+3438809 None:intergenic
TACCATAGAAGAATGAGAAA+AGG 0.443165 4_3:+3440451 None:intergenic
TGCATATATGCAGTACGGTT+TGG 0.445973 4_3:-3438930 Msa0624730:intron
GGTTTGGTGCATGTTGCTGC+TGG 0.446456 4_3:-3438914 Msa0624730:CDS
GAATCAACAAAATTAATAAG+AGG 0.456579 4_3:-3440711 Msa0624730:five_prime_UTR
TTGTGGAGAGAGTAGTTGGA+AGG 0.459886 4_3:-3437553 Msa0624730:CDS
TTCAGTATCATCAAAACGTT+GGG 0.461597 4_3:+3437451 None:intergenic
AATTGTTATATCTTTATACA+TGG 0.470672 4_3:+3437206 None:intergenic
TGCTGCTGGAGATTTACTTA+GGG 0.479317 4_3:-3438900 Msa0624730:CDS
CTTAGGGCGGAAATTGAAAC+CGG 0.486128 4_3:-3438884 Msa0624730:CDS
AGTAGCCTGTGATAAGCTCC+TGG 0.491046 4_3:+3438639 None:intergenic
AAGCCAGATTCTGTAGAGAA+TGG 0.494738 4_3:-3438682 Msa0624730:CDS
ACCATAGAAGAATGAGAAAA+GGG 0.498183 4_3:+3440452 None:intergenic
TTATATCTTTATACATGGAA+AGG 0.508644 4_3:+3437211 None:intergenic
TCTTCATCATCTTCTTTGAA+GGG 0.513126 4_3:-3440623 Msa0624730:CDS
TGTGAAAGCGGTGGCGAAGA+CGG 0.516859 4_3:-3440353 Msa0624730:CDS
CAGATTCTGTAGAGAATGGT+TGG 0.520796 4_3:-3438678 Msa0624730:CDS
CTTCAGTATCATCAAAACGT+TGG 0.527352 4_3:+3437450 None:intergenic
CAAAGAAGATGATGAAGAAG+TGG 0.539826 4_3:+3440628 None:intergenic
TGGTTCCTCCCTGTTACTGG+TGG 0.548985 4_3:-3435498 Msa0624730:three_prime_UTR
TAATGGAAATTCCTCTCAGA+AGG 0.552468 4_3:-3435825 Msa0624730:CDS
AGCGGTGGCGAAGACGGAGG+AGG 0.552869 4_3:-3440347 Msa0624730:CDS
TGTAGCGAGTCATAGTTTGT+TGG 0.554883 4_3:-3435523 Msa0624730:three_prime_UTR
AATCAACAAAATTAATAAGA+GGG 0.556950 4_3:-3440710 Msa0624730:five_prime_UTR
AATTCGTAAAATAAACTATG+AGG 0.558111 4_3:+3435569 None:intergenic
TGCGAAAGAATATATGGAGA+AGG 0.559519 4_3:-3438843 Msa0624730:CDS
TCATTTGAGTGTGAAAATGA+AGG 0.563211 4_3:-3435547 Msa0624730:three_prime_UTR
TTATGTATTCGATTTGCCAA+AGG 0.568312 4_3:-3435428 Msa0624730:three_prime_UTR
TGCTGGAGATTTACTTAGGG+CGG 0.569705 4_3:-3438897 Msa0624730:CDS
TTACAACTCTTCTAGAGCAA+AGG 0.576098 4_3:-3435775 Msa0624730:CDS
AGCAAATACTTCCTTCTGAG+AGG 0.577991 4_3:+3435814 None:intergenic
TATGATTCAGATTGTGAAAG+CGG 0.579020 4_3:-3440365 Msa0624730:intron
ATTATAGTTTACCTTCAGCA+AGG 0.583358 4_3:+3435666 None:intergenic
ATATATGGAGAAGGGACAGT+TGG 0.586158 4_3:-3438834 Msa0624730:CDS
CCGGAAATCATAACATGAAG+TGG 0.589982 4_3:+3440322 None:intergenic
ATATCCCAGGAGCTTATCAC+AGG 0.594589 4_3:-3438644 Msa0624730:CDS
AGACAAAAGAAATCGCGGAT+AGG 0.596089 4_3:-3437478 Msa0624730:CDS
CCCTGATGAAATAGTTGTCA+TGG 0.597046 4_3:-3438810 Msa0624730:intron
ATACAGAAAATGGTAAAGAA+CGG 0.604015 4_3:+3435465 None:intergenic
GGAGATTAGATCCTGTTACT+GGG 0.607211 4_3:-3437532 Msa0624730:CDS
GCGAAAGAATATATGGAGAA+GGG 0.615803 4_3:-3438842 Msa0624730:CDS
CATATGAACCACCAGTAACA+GGG 0.623448 4_3:+3435490 None:intergenic
TTAACATGGTGCCTTGCTGA+AGG 0.631362 4_3:-3435677 Msa0624730:three_prime_UTR
TCCAGAGACAAAAGAAATCG+CGG 0.637052 4_3:-3437483 Msa0624730:CDS
GTAGCCTGTGATAAGCTCCT+GGG 0.640337 4_3:+3438640 None:intergenic
CACCCATCATCAAAATGTGG+AGG 0.641846 4_3:-3437238 Msa0624730:CDS
GATTCAGATTGTGAAAGCGG+TGG 0.642056 4_3:-3440362 Msa0624730:intron
GGTGTCTGAAGATATTCTTG+TGG 0.642880 4_3:-3437570 Msa0624730:CDS
ATGAGAAAAGGGTCGCGAAG+AGG 0.645968 4_3:+3440463 None:intergenic
CCATGACAACTATTTCATCA+GGG 0.657389 4_3:+3438810 None:intergenic
GAACACCCATCATCAAAATG+TGG 0.675841 4_3:-3437241 Msa0624730:CDS
GAAAGCGGTGGCGAAGACGG+AGG 0.684721 4_3:-3440350 Msa0624730:CDS
CGCGAAGAGGATGAACGAAG+AGG 0.691693 4_3:+3440476 None:intergenic
ATGAACCACCAGTAACAGGG+AGG 0.771471 4_3:+3435493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTTATTTAT+TGG - chr4_3:3435704-3435723 Msa0624730:three_prime_UTR 0.0%
!! TTATGATTATGATTATTATT+TGG + chr4_3:3435543-3435562 None:intergenic 10.0%
!! TATTACATATATAGTTTAAA+GGG + chr4_3:3438379-3438398 None:intergenic 10.0%
!! AATCAACAAAATTAATAAGA+GGG - chr4_3:3435414-3435433 Msa0624730:three_prime_UTR 15.0%
!!! TTATGATTATTATTTGGAAT+TGG + chr4_3:3435537-3435556 None:intergenic 15.0%
!! AAAAAAAAAACTTACTTTCT+TGG + chr4_3:3435869-3435888 None:intergenic 15.0%
!! TTAAAAATAGTAGAAAAGTT+AGG + chr4_3:3436036-3436055 None:intergenic 15.0%
!!! AGGAAAGAAATTTTAATTAA+GGG + chr4_3:3436766-3436785 None:intergenic 15.0%
!! AATAATATAGTAAGGAATTT+GGG + chr4_3:3437089-3437108 None:intergenic 15.0%
!! AAATAATATAGTAAGGAATT+TGG + chr4_3:3437090-3437109 None:intergenic 15.0%
!!! GAATCAATTTTTTATTTCAA+TGG + chr4_3:3437171-3437190 None:intergenic 15.0%
!! ATATTTGAATATCAATTGTA+CGG + chr4_3:3437363-3437382 None:intergenic 15.0%
!!! TAACTCTTTTATTTAATAGA+TGG - chr4_3:3437402-3437421 Msa0624730:intron 15.0%
!!! ATAATGAAATATCGATATTT+TGG + chr4_3:3437722-3437741 None:intergenic 15.0%
!! AAAATATCGATATTTCATTA+TGG - chr4_3:3437721-3437740 Msa0624730:intron 15.0%
!! TATTCTTATTGAATAATATC+TGG - chr4_3:3437826-3437845 Msa0624730:intron 15.0%
!! TTAAAATAAAATTAAAGGTG+TGG - chr4_3:3438291-3438310 Msa0624730:intron 15.0%
!!! TAAAATAAAATTAAAGGTGT+GGG - chr4_3:3438292-3438311 Msa0624730:intron 15.0%
!! GTATTACATATATAGTTTAA+AGG + chr4_3:3438380-3438399 None:intergenic 15.0%
!! AATTGTTATATCTTTATACA+TGG + chr4_3:3438921-3438940 None:intergenic 15.0%
!! GTATAAAGATATAACAATTA+AGG - chr4_3:3438922-3438941 Msa0624730:intron 15.0%
!! TGAAGTGTATATTAAATAAT+TGG - chr4_3:3439078-3439097 Msa0624730:intron 15.0%
!!! TTTTTTTTAAAAGGAAGAAA+AGG + chr4_3:3439631-3439650 None:intergenic 15.0%
!! AATAATCAATTTCTATTTAG+TGG + chr4_3:3440005-3440024 None:intergenic 15.0%
!! GAATCAACAAAATTAATAAG+AGG - chr4_3:3435413-3435432 Msa0624730:three_prime_UTR 20.0%
!!! GAGGAAAGAAATTTTAATTA+AGG + chr4_3:3436767-3436786 None:intergenic 20.0%
!!! TCCTTACTATATTATTTTCT+TGG - chr4_3:3437093-3437112 Msa0624730:intron 20.0%
!!! TATATTATTTTCTTGGCTTT+GGG - chr4_3:3437100-3437119 Msa0624730:intron 20.0%
!! ACTAAATACAATTACATGTA+TGG - chr4_3:3437869-3437888 Msa0624730:intron 20.0%
!! GTTATGTTAAGGAATATATA+GGG + chr4_3:3438047-3438066 None:intergenic 20.0%
!! TGTTATGTTAAGGAATATAT+AGG + chr4_3:3438048-3438067 None:intergenic 20.0%
!! TTGTTAGAAAACAATATAAG+AGG + chr4_3:3438149-3438168 None:intergenic 20.0%
!!! TTATATTGTTTTCTAACAAG+AGG - chr4_3:3438150-3438169 Msa0624730:intron 20.0%
!!! AATTTACAGTTCAAATTTTC+AGG - chr4_3:3438533-3438552 Msa0624730:intron 20.0%
!! ATAGATTAGAGTTTCTAATA+GGG + chr4_3:3438711-3438730 None:intergenic 20.0%
!! TATAGATTAGAGTTTCTAAT+AGG + chr4_3:3438712-3438731 None:intergenic 20.0%
!!! TTATTGTTTGTTTTCAACTT+AGG - chr4_3:3438847-3438866 Msa0624730:CDS 20.0%
!! TTATATCTTTATACATGGAA+AGG + chr4_3:3438916-3438935 None:intergenic 20.0%
!! ACATATTAAATATTAGCAGT+TGG - chr4_3:3439551-3439570 Msa0624730:intron 20.0%
!!! CTGTGATGATTTTTTTTAAA+AGG + chr4_3:3439640-3439659 None:intergenic 20.0%
!! GCATATTCTTATAATGTTAT+AGG + chr4_3:3439770-3439789 None:intergenic 20.0%
!! TAGAAATTGATTATTTCACA+AGG - chr4_3:3440010-3440029 Msa0624730:intron 20.0%
!! AATTCGTAAAATAAACTATG+AGG + chr4_3:3440558-3440577 None:intergenic 20.0%
!! CAATAATGATATACAGAAAA+TGG + chr4_3:3440672-3440691 None:intergenic 20.0%
!!! CATTTTCTGTATATCATTAT+TGG - chr4_3:3440670-3440689 Msa0624730:exon 20.0%
! AGCATTTATCTATCTTAAAC+CGG + chr4_3:3436281-3436300 None:intergenic 25.0%
!!! TTACCCTGTTTTTTAACAAT+AGG - chr4_3:3436423-3436442 Msa0624730:intron 25.0%
! AAGCCTATTGTTAAAAAACA+GGG + chr4_3:3436429-3436448 None:intergenic 25.0%
! AAAGCCTATTGTTAAAAAAC+AGG + chr4_3:3436430-3436449 None:intergenic 25.0%
!!! AGATAATCATTTTGATCCAT+CGG - chr4_3:3436465-3436484 Msa0624730:intron 25.0%
! ATATAATGCGATATTCCATT+TGG + chr4_3:3436834-3436853 None:intergenic 25.0%
! GCCAAGAAAATAATATAGTA+AGG + chr4_3:3437097-3437116 None:intergenic 25.0%
!! CTATATTATTTTCTTGGCTT+TGG - chr4_3:3437099-3437118 Msa0624730:intron 25.0%
! TCTAGAAGAATGAAAATATC+AGG + chr4_3:3437535-3437554 None:intergenic 25.0%
!! TGATATTTTCATTCTTCTAG+AGG - chr4_3:3437534-3437553 Msa0624730:CDS 25.0%
! GTTATGACTATGATATAAAC+TGG - chr4_3:3437772-3437791 Msa0624730:intron 25.0%
! ATTGAATAATATCTGGAGAA+AGG - chr4_3:3437833-3437852 Msa0624730:intron 25.0%
! GTGGACAAAAATATTTATAG+CGG + chr4_3:3438125-3438144 None:intergenic 25.0%
!!! TTAAAATTGTTTCTACGAAG+TGG + chr4_3:3438275-3438294 None:intergenic 25.0%
! GTTGTTCATATAATTGATCA+AGG + chr4_3:3438402-3438421 None:intergenic 25.0%
!! TATTTCTGTAGTAAGACTAA+TGG + chr4_3:3438482-3438501 None:intergenic 25.0%
! AGTCTTACTACAGAAATAAA+AGG - chr4_3:3438484-3438503 Msa0624730:intron 25.0%
! GTCTTACTACAGAAATAAAA+GGG - chr4_3:3438485-3438504 Msa0624730:intron 25.0%
!! TGCATTTTCTGATAAAAGAA+TGG + chr4_3:3438751-3438770 None:intergenic 25.0%
! ATTTCTCAAATCTGTAGTAA+TGG + chr4_3:3439056-3439075 None:intergenic 25.0%
! ACAATAATGTGACATTTAGT+GGG + chr4_3:3439105-3439124 None:intergenic 25.0%
! TACAATAATGTGACATTTAG+TGG + chr4_3:3439106-3439125 None:intergenic 25.0%
! TATTTATGTTCCCAAAACTT+TGG - chr4_3:3439131-3439150 Msa0624730:intron 25.0%
!! TTTTCCATTACCAAAGTTTT+GGG + chr4_3:3439144-3439163 None:intergenic 25.0%
!! ATTTTCCATTACCAAAGTTT+TGG + chr4_3:3439145-3439164 None:intergenic 25.0%
!!! AACTTTGGTAATGGAAAATA+TGG - chr4_3:3439146-3439165 Msa0624730:intron 25.0%
! CAGTTCTTCATATCATTATA+AGG - chr4_3:3439789-3439808 Msa0624730:intron 25.0%
! CTTCATATCATTATAAGGTT+CGG - chr4_3:3439794-3439813 Msa0624730:intron 25.0%
! TTCATATCATTATAAGGTTC+GGG - chr4_3:3439795-3439814 Msa0624730:intron 25.0%
! TTATCAGAAAAAACCCTTTA+TGG + chr4_3:3440039-3440058 None:intergenic 25.0%
!!! TAAAGGGTTTTTTCTGATAA+TGG - chr4_3:3440039-3440058 Msa0624730:intron 25.0%
! AATGGTGATAGTAATAACTA+TGG - chr4_3:3440057-3440076 Msa0624730:intron 25.0%
! ATGGTGATAGTAATAACTAT+GGG - chr4_3:3440058-3440077 Msa0624730:intron 25.0%
! ATTATATGTTTACTGTGTCT+TGG + chr4_3:3440232-3440251 None:intergenic 25.0%
!!! TTTTGTTGTCTACAGATTAA+TGG - chr4_3:3440282-3440301 Msa0624730:intron 25.0%
!! TTGATAGTACAAAGTTGTAT+TGG - chr4_3:3440531-3440550 Msa0624730:CDS 25.0%
! ATACAGAAAATGGTAAAGAA+CGG + chr4_3:3440662-3440681 None:intergenic 25.0%
!!! CCTTATTCTTTTATTTCCTT+TGG + chr4_3:3440715-3440734 None:intergenic 25.0%
! CCAAAGGAAATAAAAGAATA+AGG - chr4_3:3440712-3440731 Msa0624730:five_prime_UTR 25.0%
AAGAGTAAGTGACGAAAAAA+TGG - chr4_3:3435449-3435468 Msa0624730:three_prime_UTR 30.0%
AGAGTAAGTGACGAAAAAAT+GGG - chr4_3:3435450-3435469 Msa0624730:three_prime_UTR 30.0%
TTCTTCATCATCTTCTTTGA+AGG - chr4_3:3435500-3435519 Msa0624730:three_prime_UTR 30.0%
TCTTCATCATCTTCTTTGAA+GGG - chr4_3:3435501-3435520 Msa0624730:three_prime_UTR 30.0%
ACCATAGAAGAATGAGAAAA+GGG + chr4_3:3435675-3435694 None:intergenic 30.0%
TACCATAGAAGAATGAGAAA+AGG + chr4_3:3435676-3435695 None:intergenic 30.0%
TATGATTCAGATTGTGAAAG+CGG - chr4_3:3435759-3435778 Msa0624730:CDS 30.0%
ATTAGCAGCATTAGCATAAT+AGG - chr4_3:3436167-3436186 Msa0624730:intron 30.0%
TCTTAAACCGGAAAATACTT+GGG + chr4_3:3436269-3436288 None:intergenic 30.0%
ATCTTAAACCGGAAAATACT+TGG + chr4_3:3436270-3436289 None:intergenic 30.0%
!! TTTAACAATAGGCTTTTTCC+AGG - chr4_3:3436434-3436453 Msa0624730:intron 30.0%
!! TTAACAATAGGCTTTTTCCA+GGG - chr4_3:3436435-3436454 Msa0624730:intron 30.0%
ATGATTATCTCAAATAACCC+TGG + chr4_3:3436455-3436474 None:intergenic 30.0%
!! GATAATCATTTTGATCCATC+GGG - chr4_3:3436466-3436485 Msa0624730:intron 30.0%
TCTTCATGTATAGTTCACAA+GGG + chr4_3:3436789-3436808 None:intergenic 30.0%
TGGAGTTTAGACATAAACTT+TGG - chr4_3:3437001-3437020 Msa0624730:intron 30.0%
!! ATCTTTTGTAGCCTTACAAA+GGG - chr4_3:3437054-3437073 Msa0624730:intron 30.0%
TAGTAAGGAATTTGGGAATT+TGG + chr4_3:3437082-3437101 None:intergenic 30.0%
!! TACTGATTCACTACTAGATA+AGG - chr4_3:3437129-3437148 Msa0624730:intron 30.0%
ATGAAATAGTTGTCATGGTA+TGG - chr4_3:3437319-3437338 Msa0624730:intron 30.0%
GATAAATTACAATGAAGCTG+AGG + chr4_3:3437605-3437624 None:intergenic 30.0%
TATTCCTAACTCTTACAGTT+TGG + chr4_3:3437800-3437819 None:intergenic 30.0%
AATACAGAGAATTCTGTACA+AGG - chr4_3:3437905-3437924 Msa0624730:intron 30.0%
CAAAAATATTTATAGCGGTC+AGG + chr4_3:3438120-3438139 None:intergenic 30.0%
AGAAAACAATATAAGAGGAG+TGG + chr4_3:3438144-3438163 None:intergenic 30.0%
TTCAGTATCATCAAAACGTT+GGG + chr4_3:3438676-3438695 None:intergenic 30.0%
!! TTTTGATGATACTGAAGAGA+AGG - chr4_3:3438680-3438699 Msa0624730:CDS 30.0%
TTTGCATATATGTAATCCCA+TGG + chr4_3:3438793-3438812 None:intergenic 30.0%
! AATATGGAGAGCGTAAAAAA+TGG - chr4_3:3439162-3439181 Msa0624730:intron 30.0%
!! GTAATCTTGTTTGTTGTTTG+TGG - chr4_3:3439269-3439288 Msa0624730:intron 30.0%
!! GCATTCATATCTTGTTGTTA+TGG - chr4_3:3439412-3439431 Msa0624730:intron 30.0%
ATCTCATCAGAACAAGTATT+TGG + chr4_3:3439579-3439598 None:intergenic 30.0%
GCAAATTCTTTCTTCATTAC+AGG + chr4_3:3439903-3439922 None:intergenic 30.0%
AAAATGTGACACTAAGAAAG+TGG - chr4_3:3439936-3439955 Msa0624730:intron 30.0%
TAATAAATCCATGTGACAAG+CGG + chr4_3:3439982-3440001 None:intergenic 30.0%
AATAACTATGGGAAGAAGAA+AGG - chr4_3:3440069-3440088 Msa0624730:intron 30.0%
AAGTCATACGATGTCAATTT+CGG - chr4_3:3440102-3440121 Msa0624730:intron 30.0%
! GAAGTATTTGCTCAAATTGA+TGG - chr4_3:3440321-3440340 Msa0624730:intron 30.0%
!!! TTTGTCGTTTTGATTTAGCA+TGG - chr4_3:3440412-3440431 Msa0624730:intron 30.0%
!!! GGTGTCTTTTTGATTTAACA+TGG - chr4_3:3440433-3440452 Msa0624730:intron 30.0%
ATTATAGTTTACCTTCAGCA+AGG + chr4_3:3440461-3440480 None:intergenic 30.0%
TCATTTGAGTGTGAAAATGA+AGG - chr4_3:3440577-3440596 Msa0624730:CDS 30.0%
! TTATGTATTCGATTTGCCAA+AGG - chr4_3:3440696-3440715 Msa0624730:five_prime_UTR 30.0%
CAAAGAAGATGATGAAGAAG+TGG + chr4_3:3435499-3435518 None:intergenic 35.0%
! ACCCTTTTCTCATTCTTCTA+TGG - chr4_3:3435671-3435690 Msa0624730:three_prime_UTR 35.0%
CCACTTCATGTTATGATTTC+CGG - chr4_3:3435802-3435821 Msa0624730:CDS 35.0%
!! AACTTACTTTCTTGGTGATG+AGG + chr4_3:3435861-3435880 None:intergenic 35.0%
AAAAGTTAGGTCATGAAGCA+CGG + chr4_3:3436023-3436042 None:intergenic 35.0%
ACTAGACTAGAGTAAGCATA+GGG + chr4_3:3436234-3436253 None:intergenic 35.0%
! TTGTTGTCATTTATCGACCA+TGG + chr4_3:3436327-3436346 None:intergenic 35.0%
TGGTCGATAAATGACAACAA+TGG - chr4_3:3436327-3436346 Msa0624730:intron 35.0%
GGTCGATAAATGACAACAAT+GGG - chr4_3:3436328-3436347 Msa0624730:intron 35.0%
! ACTCTTTTCTAACTCAACTC+TGG - chr4_3:3436608-3436627 Msa0624730:intron 35.0%
GTCTTCATGTATAGTTCACA+AGG + chr4_3:3436790-3436809 None:intergenic 35.0%
TTATATTCCTTTCCTCTCCT+CGG - chr4_3:3436848-3436867 Msa0624730:intron 35.0%
GTTGAACCAAATTTACCTAG+AGG - chr4_3:3436870-3436889 Msa0624730:intron 35.0%
AAGCATCCTCTAGGTAAATT+TGG + chr4_3:3436879-3436898 None:intergenic 35.0%
AAATTTACCTAGAGGATGCT+TGG - chr4_3:3436878-3436897 Msa0624730:intron 35.0%
AATTTACCTAGAGGATGCTT+GGG - chr4_3:3436879-3436898 Msa0624730:intron 35.0%
TTAGACATAAACTTTGGACC+TGG - chr4_3:3437007-3437026 Msa0624730:intron 35.0%
TAAGGCTACAAAAGATGCAA+TGG + chr4_3:3437050-3437069 None:intergenic 35.0%
!! CATCTTTTGTAGCCTTACAA+AGG - chr4_3:3437053-3437072 Msa0624730:intron 35.0%
TCAAGTGCATATATGCAGTA+CGG - chr4_3:3437189-3437208 Msa0624730:intron 35.0%
ATTGAAACCGGAAGTGAAAA+TGG - chr4_3:3437252-3437271 Msa0624730:CDS 35.0%
AAAGCGTGCGAAAGAATATA+TGG - chr4_3:3437275-3437294 Msa0624730:intron 35.0%
TGCGAAAGAATATATGGAGA+AGG - chr4_3:3437281-3437300 Msa0624730:intron 35.0%
GCGAAAGAATATATGGAGAA+GGG - chr4_3:3437282-3437301 Msa0624730:intron 35.0%
CCATGACAACTATTTCATCA+GGG + chr4_3:3437317-3437336 None:intergenic 35.0%
ACCATGACAACTATTTCATC+AGG + chr4_3:3437318-3437337 None:intergenic 35.0%
AATAGTTGTCATGGTATGGT+AGG - chr4_3:3437323-3437342 Msa0624730:intron 35.0%
ATAGTTGTCATGGTATGGTA+GGG - chr4_3:3437324-3437343 Msa0624730:intron 35.0%
GAATTCTGTACAAGGTGATA+CGG - chr4_3:3437913-3437932 Msa0624730:intron 35.0%
AATTCTGTACAAGGTGATAC+GGG - chr4_3:3437914-3437933 Msa0624730:intron 35.0%
!! TTACGGAAGGGAAGTATTTA+GGG + chr4_3:3437983-3438002 None:intergenic 35.0%
GAATATATAGGGAAAGACAG+GGG + chr4_3:3438036-3438055 None:intergenic 35.0%
GGAATATATAGGGAAAGACA+GGG + chr4_3:3438037-3438056 None:intergenic 35.0%
AGGAATATATAGGGAAAGAC+AGG + chr4_3:3438038-3438057 None:intergenic 35.0%
AGTTACAGCGTGTTATGTTA+AGG + chr4_3:3438058-3438077 None:intergenic 35.0%
TGATATATCTTCCCAGTAAC+AGG + chr4_3:3438606-3438625 None:intergenic 35.0%
CTTCAGTATCATCAAAACGT+TGG + chr4_3:3438677-3438696 None:intergenic 35.0%
! CAAATCTGTAGTAATGGAGA+GGG + chr4_3:3439050-3439069 None:intergenic 35.0%
! TCAAATCTGTAGTAATGGAG+AGG + chr4_3:3439051-3439070 None:intergenic 35.0%
TGTTCCCAAAACTTTGGTAA+TGG - chr4_3:3439137-3439156 Msa0624730:intron 35.0%
TACTGATAGACATGGTTGAT+TGG + chr4_3:3439320-3439339 None:intergenic 35.0%
GCATACAATACTGATAGACA+TGG + chr4_3:3439328-3439347 None:intergenic 35.0%
AGTATTGTATGCTACCAATG+TGG - chr4_3:3439336-3439355 Msa0624730:intron 35.0%
TGTTATGGATAAGATGCCAA+CGG - chr4_3:3439427-3439446 Msa0624730:intron 35.0%
TCATAGTGTAAGCAAAACGA+GGG - chr4_3:3439470-3439489 Msa0624730:intron 35.0%
!! GAGAAGTGTCTTATTGTGAT+AGG - chr4_3:3439526-3439545 Msa0624730:intron 35.0%
GTGTGAGGAAAAATGATTGA+GGG - chr4_3:3439689-3439708 Msa0624730:intron 35.0%
AGGAAAAATGATTGAGGGAT+GGG - chr4_3:3439694-3439713 Msa0624730:intron 35.0%
TGATAAATAGGCTGAAACAC+TGG - chr4_3:3439717-3439736 Msa0624730:intron 35.0%
TCAGAAAAAACCCTTTATGG+TGG + chr4_3:3440036-3440055 None:intergenic 35.0%
AGTCATACGATGTCAATTTC+GGG - chr4_3:3440103-3440122 Msa0624730:intron 35.0%
TAATGGAAATTCCTCTCAGA+AGG - chr4_3:3440299-3440318 Msa0624730:intron 35.0%
!! TTACAACTCTTCTAGAGCAA+AGG - chr4_3:3440349-3440368 Msa0624730:CDS 35.0%
GAAAGCTTCTTCAGAATCTA+TGG - chr4_3:3440371-3440390 Msa0624730:intron 35.0%
CCGGAAATCATAACATGAAG+TGG + chr4_3:3435805-3435824 None:intergenic 40.0%
CAATTTGAGCCTATGAAGCA+TGG - chr4_3:3435906-3435925 Msa0624730:intron 40.0%
TATGAAGCATGGATGTTCCT+CGG - chr4_3:3435917-3435936 Msa0624730:intron 40.0%
ATGAAGCACGGATAAAGACA+CGG + chr4_3:3436011-3436030 None:intergenic 40.0%
CACTAGACTAGAGTAAGCAT+AGG + chr4_3:3436235-3436254 None:intergenic 40.0%
ACTCTAGTCTAGTGTGCTAA+AGG - chr4_3:3436241-3436260 Msa0624730:intron 40.0%
!!! AAAGGCACCCAAGTATTTTC+CGG - chr4_3:3436259-3436278 Msa0624730:intron 40.0%
ATGCTTACTCTAATCTGCCA+TGG - chr4_3:3436296-3436315 Msa0624730:intron 40.0%
! TTGTCATTTATCGACCATGG+TGG + chr4_3:3436324-3436343 None:intergenic 40.0%
GCGTACAATACACCAATTGT+GGG + chr4_3:3436399-3436418 None:intergenic 40.0%
TGCGTACAATACACCAATTG+TGG + chr4_3:3436400-3436419 None:intergenic 40.0%
!! AATCATTTTGATCCATCGGG+TGG - chr4_3:3436469-3436488 Msa0624730:intron 40.0%
!! ATCATTTTGATCCATCGGGT+GGG - chr4_3:3436470-3436489 Msa0624730:intron 40.0%
! ACAAATCCCCCAATTTTGGA+GGG + chr4_3:3436637-3436656 None:intergenic 40.0%
! TACAAATCCCCCAATTTTGG+AGG + chr4_3:3436638-3436657 None:intergenic 40.0%
TCCAAAATTGGGGGATTTGT+AGG - chr4_3:3436637-3436656 Msa0624730:intron 40.0%
CCAAAATTGGGGGATTTGTA+GGG - chr4_3:3436638-3436657 Msa0624730:intron 40.0%
CAAAATTGGGGGATTTGTAG+GGG - chr4_3:3436639-3436658 Msa0624730:intron 40.0%
TCATGTATAGTTCACAAGGG+AGG + chr4_3:3436786-3436805 None:intergenic 40.0%
TATTCCATTTGGTCAAGAGG+AGG + chr4_3:3436823-3436842 None:intergenic 40.0%
CGATATTCCATTTGGTCAAG+AGG + chr4_3:3436826-3436845 None:intergenic 40.0%
! AGGTAAATTTGGTTCAACCG+AGG + chr4_3:3436868-3436887 None:intergenic 40.0%
ATTTACCTAGAGGATGCTTG+GGG - chr4_3:3436880-3436899 Msa0624730:intron 40.0%
GTGTGTCTTACCAGAATGTT+TGG - chr4_3:3436943-3436962 Msa0624730:intron 40.0%
TGAAAGGGATCCAAACATTC+TGG + chr4_3:3436956-3436975 None:intergenic 40.0%
ATGTTTGGATCCCTTTCACA+TGG - chr4_3:3436958-3436977 Msa0624730:intron 40.0%
AGCAATTGCACCATGTGAAA+GGG + chr4_3:3436971-3436990 None:intergenic 40.0%
CAAAAGATGCAATGGTTGCA+AGG + chr4_3:3437042-3437061 None:intergenic 40.0%
GGAATTTGGATCCCTTTGTA+AGG + chr4_3:3437068-3437087 None:intergenic 40.0%
TGCATATATGCAGTACGGTT+TGG - chr4_3:3437194-3437213 Msa0624730:intron 40.0%
TTGCTGCTGGAGATTTACTT+AGG - chr4_3:3437223-3437242 Msa0624730:CDS 40.0%
TGCTGCTGGAGATTTACTTA+GGG - chr4_3:3437224-3437243 Msa0624730:CDS 40.0%
! ACGCTTTCCATTTTCACTTC+CGG + chr4_3:3437262-3437281 None:intergenic 40.0%
ATATATGGAGAAGGGACAGT+TGG - chr4_3:3437290-3437309 Msa0624730:intron 40.0%
CCCTGATGAAATAGTTGTCA+TGG - chr4_3:3437314-3437333 Msa0624730:intron 40.0%
TCATGGTATGGTAGGGTAAA+TGG - chr4_3:3437331-3437350 Msa0624730:intron 40.0%
AAGCCAGATTCTGTAGAGAA+TGG - chr4_3:3437442-3437461 Msa0624730:intron 40.0%
CAACCATTCTCTACAGAATC+TGG + chr4_3:3437448-3437467 None:intergenic 40.0%
CAGATTCTGTAGAGAATGGT+TGG - chr4_3:3437446-3437465 Msa0624730:CDS 40.0%
!!! TGTAGAGAATGGTTGGCTTT+TGG - chr4_3:3437453-3437472 Msa0624730:CDS 40.0%
CTACTGCACTTAAGGAGTTA+GGG - chr4_3:3437503-3437522 Msa0624730:CDS 40.0%
! CTTCTAGAGGTAAACACTTG+TGG - chr4_3:3437547-3437566 Msa0624730:CDS 40.0%
!!! AGATGCAAGGTTTTGTTGAG+AGG + chr4_3:3437749-3437768 None:intergenic 40.0%
TCTCAACAAAACCTTGCATC+TGG - chr4_3:3437748-3437767 Msa0624730:intron 40.0%
TAGTCATAACTCCAGATGCA+AGG + chr4_3:3437762-3437781 None:intergenic 40.0%
GGTACCAAACTGTAAGAGTT+AGG - chr4_3:3437793-3437812 Msa0624730:intron 40.0%
AGGTCAAGCTCTCTAATACT+TGG + chr4_3:3437954-3437973 None:intergenic 40.0%
!! GTTACGGAAGGGAAGTATTT+AGG + chr4_3:3437984-3438003 None:intergenic 40.0%
!! TGGATGGTAATGGCTGTATA+GGG + chr4_3:3438189-3438208 None:intergenic 40.0%
!! TTGGATGGTAATGGCTGTAT+AGG + chr4_3:3438190-3438209 None:intergenic 40.0%
CCATTACCATCCAAGTGAAA+GGG - chr4_3:3438196-3438215 Msa0624730:intron 40.0%
CATTACCATCCAAGTGAAAG+GGG - chr4_3:3438197-3438216 Msa0624730:intron 40.0%
GTTTCTACGAAGTGGCAAAA+TGG + chr4_3:3438267-3438286 None:intergenic 40.0%
!! TAGCAGAATAGTGGACTCAT+TGG - chr4_3:3438321-3438340 Msa0624730:intron 40.0%
GGTGTCTGAAGATATTCTTG+TGG - chr4_3:3438554-3438573 Msa0624730:intron 40.0%
ATTCTTGTGGAGAGAGTAGT+TGG - chr4_3:3438567-3438586 Msa0624730:intron 40.0%
AGGAGATTAGATCCTGTTAC+TGG - chr4_3:3438591-3438610 Msa0624730:CDS 40.0%
GGAGATTAGATCCTGTTACT+GGG - chr4_3:3438592-3438611 Msa0624730:CDS 40.0%
TCCAGAGACAAAAGAAATCG+CGG - chr4_3:3438641-3438660 Msa0624730:CDS 40.0%
AGACAAAAGAAATCGCGGAT+AGG - chr4_3:3438646-3438665 Msa0624730:CDS 40.0%
GAACACCCATCATCAAAATG+TGG - chr4_3:3438883-3438902 Msa0624730:CDS 40.0%
!! AGCCTCCACATTTTGATGAT+GGG + chr4_3:3438891-3438910 None:intergenic 40.0%
ATACACGTGTCAACATGAGT+TGG - chr4_3:3438996-3439015 Msa0624730:intron 40.0%
TACACGTGTCAACATGAGTT+GGG - chr4_3:3438997-3439016 Msa0624730:intron 40.0%
AATGGAGACAGAAAATGGAG+AGG + chr4_3:3439025-3439044 None:intergenic 40.0%
GGGAAAATGGAGACAGAAAA+TGG + chr4_3:3439030-3439049 None:intergenic 40.0%
! GTAGTAATGGAGAGGGAAAA+TGG + chr4_3:3439043-3439062 None:intergenic 40.0%
GTATCCTTACAAGATGTGGA+CGG + chr4_3:3439202-3439221 None:intergenic 40.0%
AGACGTATCCTTACAAGATG+TGG + chr4_3:3439206-3439225 None:intergenic 40.0%
CTTGTAAGGATACGTCTATG+AGG - chr4_3:3439209-3439228 Msa0624730:intron 40.0%
GTCATAGTGTAAGCAAAACG+AGG - chr4_3:3439469-3439488 Msa0624730:intron 40.0%
AGCTAGAAAACCCTGATGAT+TGG - chr4_3:3439667-3439686 Msa0624730:intron 40.0%
TTTCCTCACACCAATCATCA+GGG + chr4_3:3439680-3439699 None:intergenic 40.0%
! TTTTCCTCACACCAATCATC+AGG + chr4_3:3439681-3439700 None:intergenic 40.0%
GGTGTGAGGAAAAATGATTG+AGG - chr4_3:3439688-3439707 Msa0624730:intron 40.0%
GAGGAAAAATGATTGAGGGA+TGG - chr4_3:3439693-3439712 Msa0624730:intron 40.0%
TTGAGGGATGGGTGATAAAT+AGG - chr4_3:3439705-3439724 Msa0624730:intron 40.0%
ATTTCACAAGGCCACCATAA+AGG - chr4_3:3440022-3440041 Msa0624730:intron 40.0%
TTTCACAAGGCCACCATAAA+GGG - chr4_3:3440023-3440042 Msa0624730:intron 40.0%
GTCATACGATGTCAATTTCG+GGG - chr4_3:3440104-3440123 Msa0624730:intron 40.0%
AGCAAATACTTCCTTCTGAG+AGG + chr4_3:3440313-3440332 None:intergenic 40.0%
! TGTAGCGAGTCATAGTTTGT+TGG - chr4_3:3440601-3440620 Msa0624730:CDS 40.0%
!! CGAGTCATAGTTTGTTGGTT+TGG - chr4_3:3440606-3440625 Msa0624730:CDS 40.0%
CATATGAACCACCAGTAACA+GGG + chr4_3:3440637-3440656 None:intergenic 40.0%
GATTCAGATTGTGAAAGCGG+TGG - chr4_3:3435762-3435781 Msa0624730:CDS 45.0%
TGAGTTCCTTTACCAGAAGC+AGG + chr4_3:3435832-3435851 None:intergenic 45.0%
GAGGAACATCCATGCTTCAT+AGG + chr4_3:3435918-3435937 None:intergenic 45.0%
ATTAGACATGTGTCCGACAC+CGG + chr4_3:3435955-3435974 None:intergenic 45.0%
AGTAAAGGTCCCGCATACAT+AGG - chr4_3:3436359-3436378 Msa0624730:intron 45.0%
GTAAAGGTCCCGCATACATA+GGG - chr4_3:3436360-3436379 Msa0624730:intron 45.0%
!! TCATTTTGATCCATCGGGTG+GGG - chr4_3:3436471-3436490 Msa0624730:intron 45.0%
GGGTTGTGTTGGACTAAGTT+TGG - chr4_3:3436501-3436520 Msa0624730:intron 45.0%
TTTGCCTGTCACATAGTGTC+TGG - chr4_3:3436542-3436561 Msa0624730:intron 45.0%
! TCTGGCTTCCCTCCAAAATT+GGG - chr4_3:3436626-3436645 Msa0624730:intron 45.0%
! CCCTACAAATCCCCCAATTT+TGG + chr4_3:3436641-3436660 None:intergenic 45.0%
! AATTTGGTTCAACCGAGGAG+AGG + chr4_3:3436863-3436882 None:intergenic 45.0%
GTAAGACACACTACGAGTTC+GGG + chr4_3:3436934-3436953 None:intergenic 45.0%
GGTAAGACACACTACGAGTT+CGG + chr4_3:3436935-3436954 None:intergenic 45.0%
CAGCAATTGCACCATGTGAA+AGG + chr4_3:3436972-3436991 None:intergenic 45.0%
AACTTTGGACCTGGATCCAA+TGG - chr4_3:3437016-3437035 Msa0624730:intron 45.0%
TGCTGGAGATTTACTTAGGG+CGG - chr4_3:3437227-3437246 Msa0624730:CDS 45.0%
CTTAGGGCGGAAATTGAAAC+CGG - chr4_3:3437240-3437259 Msa0624730:CDS 45.0%
!!! GAGAATGGTTGGCTTTTGGA+TGG - chr4_3:3437457-3437476 Msa0624730:CDS 45.0%
ATATCCCAGGAGCTTATCAC+AGG - chr4_3:3437480-3437499 Msa0624730:CDS 45.0%
ATCACAGGCTACTGCACTTA+AGG - chr4_3:3437495-3437514 Msa0624730:CDS 45.0%
GCTACTGCACTTAAGGAGTT+AGG - chr4_3:3437502-3437521 Msa0624730:CDS 45.0%
AAGGTGATACGGGTTTCACT+TGG - chr4_3:3437924-3437943 Msa0624730:intron 45.0%
!! GGAAGGGAAGTATTTAGGGA+GGG + chr4_3:3437979-3437998 None:intergenic 45.0%
GTGTTTAGGTGGTTACGGAA+GGG + chr4_3:3437995-3438014 None:intergenic 45.0%
AGTGTTTAGGTGGTTACGGA+AGG + chr4_3:3437996-3438015 None:intergenic 45.0%
!! GGGAAGTGTTTAGGTGGTTA+CGG + chr4_3:3438000-3438019 None:intergenic 45.0%
!! GTTACTGGGAAGTGTTTAGG+TGG + chr4_3:3438006-3438025 None:intergenic 45.0%
!! GTGGTTACTGGGAAGTGTTT+AGG + chr4_3:3438009-3438028 None:intergenic 45.0%
ACAGGGGAAAAGTGGTTACT+GGG + chr4_3:3438020-3438039 None:intergenic 45.0%
GCCATTACCATCCAAGTGAA+AGG - chr4_3:3438195-3438214 Msa0624730:intron 45.0%
CCCTTTCACTTGGATGGTAA+TGG + chr4_3:3438199-3438218 None:intergenic 45.0%
GGGATGATGTAGCAGAATAG+TGG - chr4_3:3438312-3438331 Msa0624730:intron 45.0%
TGTTGTGACCTTGCAGTTGA+AGG - chr4_3:3438427-3438446 Msa0624730:intron 45.0%
TAGTGTCTCCTTCAACTGCA+AGG + chr4_3:3438438-3438457 None:intergenic 45.0%
TTGTGGAGAGAGTAGTTGGA+AGG - chr4_3:3438571-3438590 Msa0624730:intron 45.0%
! GCGATTTCTTTTGTCTCTGG+AGG + chr4_3:3438642-3438661 None:intergenic 45.0%
! TCCGCGATTTCTTTTGTCTC+TGG + chr4_3:3438645-3438664 None:intergenic 45.0%
ATGCTCTCTGTTGACAACCA+TGG - chr4_3:3438773-3438792 Msa0624730:intron 45.0%
TGCTCTCTGTTGACAACCAT+GGG - chr4_3:3438774-3438793 Msa0624730:intron 45.0%
CACCCATCATCAAAATGTGG+AGG - chr4_3:3438886-3438905 Msa0624730:CDS 45.0%
!! CAGCCTCCACATTTTGATGA+TGG + chr4_3:3438892-3438911 None:intergenic 45.0%
! GGAGAGCGTAAAAAATGGAG+AGG - chr4_3:3439167-3439186 Msa0624730:intron 45.0%
AACTCCGTCCACATCTTGTA+AGG - chr4_3:3439195-3439214 Msa0624730:intron 45.0%
!! AAGGATTGGCTACTCCACAT+TGG + chr4_3:3439353-3439372 None:intergenic 45.0%
TCTACTGCGGTAACAAGGAT+TGG + chr4_3:3439367-3439386 None:intergenic 45.0%
TGCTTTCTACTGCGGTAACA+AGG + chr4_3:3439372-3439391 None:intergenic 45.0%
GGTAAACACACACACATCAG+TGG - chr4_3:3439491-3439510 Msa0624730:intron 45.0%
AAACCCTGATGATTGGTGTG+AGG - chr4_3:3439674-3439693 Msa0624730:intron 45.0%
CATGCACTCGAAACACTATC+TGG - chr4_3:3440145-3440164 Msa0624730:intron 45.0%
TGTCTTGGCTATGCATTAGC+AGG + chr4_3:3440217-3440236 None:intergenic 45.0%
TTAACATGGTGCCTTGCTGA+AGG - chr4_3:3440447-3440466 Msa0624730:intron 45.0%
GCATATGAACCACCAGTAAC+AGG + chr4_3:3440638-3440657 None:intergenic 45.0%
!!! CAATTTTAAAATAAAATTAA+AGG - chr4_3:3438286-3438305 Msa0624730:intron 5.0%
ATGAGAAAAGGGTCGCGAAG+AGG + chr4_3:3435664-3435683 None:intergenic 50.0%
TTTACCAGAAGCAGGTGCAC+CGG + chr4_3:3435824-3435843 None:intergenic 50.0%
GCATGGATGTTCCTCGGATT+AGG - chr4_3:3435923-3435942 Msa0624730:intron 50.0%
TTAGACATGTGTCCGACACC+GGG + chr4_3:3435954-3435973 None:intergenic 50.0%
CACGGATAAAGACACGGACA+CGG + chr4_3:3436005-3436024 None:intergenic 50.0%
TTCCCAGACCCTATGTATGC+GGG + chr4_3:3436371-3436390 None:intergenic 50.0%
CTTCCCAGACCCTATGTATG+CGG + chr4_3:3436372-3436391 None:intergenic 50.0%
GCATACATAGGGTCTGGGAA+GGG - chr4_3:3436371-3436390 Msa0624730:intron 50.0%
CATACATAGGGTCTGGGAAG+GGG - chr4_3:3436372-3436391 Msa0624730:intron 50.0%
CTGTCACATAGTGTCTGGCT+GGG - chr4_3:3436547-3436566 Msa0624730:intron 50.0%
TGTCACATAGTGTCTGGCTG+GGG - chr4_3:3436548-3436567 Msa0624730:intron 50.0%
TAGTGTCTGGCTGGGGAAAA+TGG - chr4_3:3436555-3436574 Msa0624730:intron 50.0%
GGAAAATGGAGTGGACGGAA+GGG - chr4_3:3436569-3436588 Msa0624730:intron 50.0%
! CTCTGGCTTCCCTCCAAAAT+TGG - chr4_3:3436625-3436644 Msa0624730:intron 50.0%
CTGGCTTCCCTCCAAAATTG+GGG - chr4_3:3436627-3436646 Msa0624730:intron 50.0%
TGGCTTCCCTCCAAAATTGG+GGG - chr4_3:3436628-3436647 Msa0624730:intron 50.0%
TTCGCCTCCTCTTGACCAAA+TGG - chr4_3:3436816-3436835 Msa0624730:intron 50.0%
CACATGGTGCAATTGCTGCA+AGG - chr4_3:3436974-3436993 Msa0624730:intron 50.0%
ATGGTGCAATTGCTGCAAGG+CGG - chr4_3:3436977-3436996 Msa0624730:intron 50.0%
TGCAATGGTTGCAAGGCCAT+TGG + chr4_3:3437035-3437054 None:intergenic 50.0%
! GGCTTTTGGATGGATATCCC+AGG - chr4_3:3437467-3437486 Msa0624730:CDS 50.0%
GTAGCCTGTGATAAGCTCCT+GGG + chr4_3:3437487-3437506 None:intergenic 50.0%
AGTAGCCTGTGATAAGCTCC+TGG + chr4_3:3437488-3437507 None:intergenic 50.0%
!! GGAAGTATTTAGGGAGGGAG+AGG + chr4_3:3437974-3437993 None:intergenic 50.0%
!! CGGAAGGGAAGTATTTAGGG+AGG + chr4_3:3437980-3437999 None:intergenic 50.0%
GACAGGGGAAAAGTGGTTAC+TGG + chr4_3:3438021-3438040 None:intergenic 50.0%
AGGGAAAGACAGGGGAAAAG+TGG + chr4_3:3438028-3438047 None:intergenic 50.0%
CAATGCATGCCCCTTTCACT+TGG + chr4_3:3438209-3438228 None:intergenic 50.0%
ATAGGCTGAAACACTGGCAG+TGG - chr4_3:3439723-3439742 Msa0624730:intron 50.0%
AGATGACACCGCTTGTCACA+TGG - chr4_3:3439971-3439990 Msa0624730:intron 50.0%
! GTTTGGTTCCTCCCTGTTAC+TGG - chr4_3:3440623-3440642 Msa0624730:CDS 50.0%
ATGAACCACCAGTAACAGGG+AGG + chr4_3:3440634-3440653 None:intergenic 50.0%
CGCGAAGAGGATGAACGAAG+AGG + chr4_3:3435651-3435670 None:intergenic 55.0%
TGTGAAAGCGGTGGCGAAGA+CGG - chr4_3:3435771-3435790 Msa0624730:CDS 55.0%
ATTTCCGGTGCACCTGCTTC+TGG - chr4_3:3435817-3435836 Msa0624730:CDS 55.0%
GGTGCACCTGCTTCTGGTAA+AGG - chr4_3:3435823-3435842 Msa0624730:CDS 55.0%
! TCCTCGGATTAGGCATGTCC+CGG - chr4_3:3435933-3435952 Msa0624730:intron 55.0%
GATTAGGCATGTCCCGGTGT+CGG - chr4_3:3435939-3435958 Msa0624730:intron 55.0%
CAATGGGCCCAGTGCAGTAA+AGG - chr4_3:3436344-3436363 Msa0624730:intron 55.0%
TGCGGGACCTTTACTGCACT+GGG + chr4_3:3436354-3436373 None:intergenic 55.0%
ATGCGGGACCTTTACTGCAC+TGG + chr4_3:3436355-3436374 None:intergenic 55.0%
GTCCCGCATACATAGGGTCT+GGG - chr4_3:3436366-3436385 Msa0624730:intron 55.0%
CGCATACATAGGGTCTGGGA+AGG - chr4_3:3436370-3436389 Msa0624730:intron 55.0%
TTTGATCCATCGGGTGGGGT+AGG - chr4_3:3436475-3436494 Msa0624730:intron 55.0%
CCAGCCAGACACTATGTGAC+AGG + chr4_3:3436549-3436568 None:intergenic 55.0%
CCTGTCACATAGTGTCTGGC+TGG - chr4_3:3436546-3436565 Msa0624730:intron 55.0%
TCTGGCTGGGGAAAATGGAG+TGG - chr4_3:3436560-3436579 Msa0624730:intron 55.0%
GCTGGGGAAAATGGAGTGGA+CGG - chr4_3:3436564-3436583 Msa0624730:intron 55.0%
GGGAAAATGGAGTGGACGGA+AGG - chr4_3:3436568-3436587 Msa0624730:intron 55.0%
AATGGAGTGGACGGAAGGGA+AGG - chr4_3:3436573-3436592 Msa0624730:intron 55.0%
ATGGAGTGGACGGAAGGGAA+GGG - chr4_3:3436574-3436593 Msa0624730:intron 55.0%
ACGGAAGGGAAGGGAAGAGA+GGG - chr4_3:3436583-3436602 Msa0624730:intron 55.0%
GGTTCAACCGAGGAGAGGAA+AGG + chr4_3:3436858-3436877 None:intergenic 55.0%
AGAGTCCCCAAGCATCCTCT+AGG + chr4_3:3436888-3436907 None:intergenic 55.0%
TGCAATTGCTGCAAGGCGGT+TGG - chr4_3:3436981-3437000 Msa0624730:intron 55.0%
GTTGCAAGGCCATTGGATCC+AGG + chr4_3:3437028-3437047 None:intergenic 55.0%
!! GGTTTGGTGCATGTTGCTGC+TGG - chr4_3:3437210-3437229 Msa0624730:CDS 55.0%
GCATGCCCCTTTCACTTGGA+TGG + chr4_3:3438205-3438224 None:intergenic 55.0%
TAAGGTTCGGGCTCGAGCAA+CGG - chr4_3:3439807-3439826 Msa0624730:intron 55.0%
TGGTTCCTCCCTGTTACTGG+TGG - chr4_3:3440626-3440645 Msa0624730:CDS 55.0%
ACCGGGACATGCCTAATCCG+AGG + chr4_3:3435937-3435956 None:intergenic 60.0%
AATCTGCCATGGCGCCACCA+TGG - chr4_3:3436307-3436326 Msa0624730:intron 60.0%
! TATCGACCATGGTGGCGCCA+TGG + chr4_3:3436316-3436335 None:intergenic 60.0%
GGTCCCGCATACATAGGGTC+TGG - chr4_3:3436365-3436384 Msa0624730:intron 60.0%
CTGGGAAGGGGTCCCACAAT+TGG - chr4_3:3436384-3436403 Msa0624730:intron 60.0%
ATCCATCGGGTGGGGTAGGT+AGG - chr4_3:3436479-3436498 Msa0624730:intron 60.0%
TCCATCGGGTGGGGTAGGTA+GGG - chr4_3:3436480-3436499 Msa0624730:intron 60.0%
GGGGTAGGTAGGGGTTGTGT+TGG - chr4_3:3436490-3436509 Msa0624730:intron 60.0%
GACGGAAGGGAAGGGAAGAG+AGG - chr4_3:3436582-3436601 Msa0624730:intron 60.0%
GTGTGCGTCAAACGAGCCGT+TGG + chr4_3:3439446-3439465 None:intergenic 60.0%
CGGCTCGTTTGACGCACACT+TGG - chr4_3:3439447-3439466 Msa0624730:intron 60.0%
AAGGTTCGGGCTCGAGCAAC+GGG - chr4_3:3439808-3439827 Msa0624730:intron 60.0%
GAAAGCGGTGGCGAAGACGG+AGG - chr4_3:3435774-3435793 Msa0624730:CDS 65.0%
CCATCGGGTGGGGTAGGTAG+GGG - chr4_3:3436481-3436500 Msa0624730:intron 65.0%
AGCGGTGGCGAAGACGGAGG+AGG - chr4_3:3435777-3435796 Msa0624730:CDS 70.0%
CCCCTACCTACCCCACCCGA+TGG + chr4_3:3436484-3436503 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 3435392 3440754 3435392 ID=Msa0624730;Name=Msa0624730
chr4_3 mRNA 3435392 3440754 3435392 ID=Msa0624730-mRNA-1;Parent=Msa0624730;Name=Msa0624730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=76|0.83|0.85|1|0.83|0.85|7|353|285
chr4_3 exon 3435392 3435849 3435392 ID=Msa0624730-mRNA-1:exon:790;Parent=Msa0624730-mRNA-1
chr4_3 exon 3437203 3437277 3437203 ID=Msa0624730-mRNA-1:exon:789;Parent=Msa0624730-mRNA-1
chr4_3 exon 3437445 3437591 3437445 ID=Msa0624730-mRNA-1:exon:788;Parent=Msa0624730-mRNA-1
chr4_3 exon 3438591 3438725 3438591 ID=Msa0624730-mRNA-1:exon:787;Parent=Msa0624730-mRNA-1
chr4_3 exon 3438811 3438939 3438811 ID=Msa0624730-mRNA-1:exon:786;Parent=Msa0624730-mRNA-1
chr4_3 exon 3440336 3440377 3440336 ID=Msa0624730-mRNA-1:exon:785;Parent=Msa0624730-mRNA-1
chr4_3 exon 3440454 3440754 3440454 ID=Msa0624730-mRNA-1:exon:784;Parent=Msa0624730-mRNA-1
chr4_3 five_prime_UTR 3440679 3440754 3440679 ID=Msa0624730-mRNA-1:five_prime_utr;Parent=Msa0624730-mRNA-1
chr4_3 CDS 3440454 3440678 3440454 ID=Msa0624730-mRNA-1:cds;Parent=Msa0624730-mRNA-1
chr4_3 CDS 3440336 3440377 3440336 ID=Msa0624730-mRNA-1:cds;Parent=Msa0624730-mRNA-1
chr4_3 CDS 3438811 3438939 3438811 ID=Msa0624730-mRNA-1:cds;Parent=Msa0624730-mRNA-1
chr4_3 CDS 3438591 3438725 3438591 ID=Msa0624730-mRNA-1:cds;Parent=Msa0624730-mRNA-1
chr4_3 CDS 3437445 3437591 3437445 ID=Msa0624730-mRNA-1:cds;Parent=Msa0624730-mRNA-1
chr4_3 CDS 3437203 3437277 3437203 ID=Msa0624730-mRNA-1:cds;Parent=Msa0624730-mRNA-1
chr4_3 CDS 3435745 3435849 3435745 ID=Msa0624730-mRNA-1:cds;Parent=Msa0624730-mRNA-1
chr4_3 three_prime_UTR 3435392 3435744 3435392 ID=Msa0624730-mRNA-1:three_prime_utr;Parent=Msa0624730-mRNA-1
Gene Sequence

>Msa0624730

ATGGGTTGCAATATCATGAATTTCTCTACCACTTCTTCATCATCTTCTTTGAAGGGACTGTGCAGTCCAATTCCAAATAATAATCATAATCATAATCAGAAGAATAAGCTACAAAAAGCGCTTTCTTCATCTTCTTCATCTTCATTTTCACTTCGTTCTTCTTCTTCATCAAATGTCTTTCCTCTTCGTTCATCCTCTTCGCGACCCTTTTCTCATTCTTCTATGATTGTGAAAGCGGTGGCGAAGACGGAGGAGGAGCCACTTCATTACGGTTTGGTGCATGTTGCTGCTGGAGATTTACTTAGGGCGGAAATTGAAACCGGAAGTGAAAATGGAAAGCGTGCGAAAGAATATATGGAGAAGGGACAGTTGGTCCCTGATGAAATAGTTGTCATGATGGTCAAAGATCGTCTCTTGAAGCCAGATTCTGTAGAGAATGGTTGGCTTTTGGATGGATATCCCAGGAGCTTATCACAGGCTACTGCACTTAAGGAGTTAGGGTTTAAGCCTGATATTTTCATTCTTCTAGAGGTGTCTGAAGATATTCTTGTGGAGAGAGTAGTTGGAAGGAGATTAGATCCTGTTACTGGGAAGATATATCATTTGAAGTATTCTCCTCCAGAGACAAAAGAAATCGCGGATAGGCTCACCCAACGTTTTGATGATACTGAAGAGAAGGTAAAGTTGCGATTGAACACCCATCATCAAAATGTGGAGGCTGTCCTTTCCATGTATAAAGATATAACAATTAAGATTAATGGAAATTCCTCTCAGAAGGAAGTATTTGCTCAAATTGATGGTGCACTTACAACTCTTCTAGAGCAAAGGAAAGCTTCTTCAGAATCTATGGTAGCATAG

Protein sequence

>Msa0624730

MGCNIMNFSTTSSSSSLKGLCSPIPNNNHNHNQKNKLQKALSSSSSSSFSLRSSSSSNVFPLRSSSSRPFSHSSMIVKAVAKTEEEPLHYGLVHVAAGDLLRAEIETGSENGKRAKEYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILLEVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQNVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA*