AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030000 MtrunA17_Chr1g0187011 96.305 839 30 1 1 839 1 838 0.0 1652
Msa0030000 MtrunA17_Chr4g0071101 49.754 609 282 6 188 784 148 744 0.0 587
Msa0030000 MtrunA17_Chr6g0484411 45.941 579 298 7 194 770 195 760 7.28e-165 499
Msa0030000 MtrunA17_Chr6g0451621 42.949 624 295 8 206 807 145 729 5.30e-158 488
Msa0030000 MtrunA17_Chr8g0391141 42.000 550 266 7 209 751 100 603 4.40e-137 421
Msa0030000 MtrunA17_Chr2g0330811 40.681 617 329 12 181 771 139 744 5.50e-130 406
Msa0030000 MtrunA17_Chr8g0366041 43.172 227 119 2 223 445 1 221 8.51e-54 186
Msa0030000 MtrunA17_Chr1g0171521 39.583 144 81 3 597 738 125 264 1.20e-24 104
Msa0030000 MtrunA17_Chr4g0067911 35.294 187 117 2 593 779 163 345 4.32e-24 104
Msa0030000 MtrunA17_Chr4g0033621 36.496 137 84 1 628 764 170 303 1.03e-19 92.8
Msa0030000 MtrunA17_Chr8g0391361 34.694 147 92 2 593 739 9 151 1.73e-19 86.7
Msa0030000 MtrunA17_Chr6g0449261 30.824 279 160 9 567 820 77 347 1.18e-18 90.9
Msa0030000 MtrunA17_Chr8g0366051 38.947 95 58 0 510 604 7 101 5.02e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030000 AT3G23070.1 60.172 816 288 16 1 794 1 801 0.0 902
Msa0030000 AT4G14510.1 59.362 721 238 10 112 794 125 828 0.0 826
Msa0030000 AT4G29750.1 45.911 697 329 14 134 820 181 839 0.0 573
Msa0030000 AT4G29750.2 46.508 673 313 13 134 796 181 816 0.0 567
Msa0030000 AT3G18390.1 46.411 599 304 4 180 770 203 792 1.25e-176 531
Msa0030000 AT3G01370.1 40.637 753 402 11 110 835 58 792 2.45e-171 522
Msa0030000 AT5G16180.1 38.907 604 299 10 177 774 177 716 1.13e-114 365
Msa0030000 AT5G16180.2 36.977 430 202 9 177 601 177 542 3.08e-64 225
Msa0030000 AT3G25440.2 36.813 182 107 3 595 771 74 252 1.14e-28 119
Msa0030000 AT3G25440.1 36.813 182 107 3 595 771 138 316 4.20e-28 119
Msa0030000 AT3G25440.4 35.976 164 97 3 613 771 1 161 2.16e-26 110
Msa0030000 AT3G25440.3 35.976 164 97 3 613 771 1 161 2.16e-26 110
Msa0030000 AT3G25440.5 35.976 164 97 3 613 771 1 161 2.16e-26 110
Msa0030000 AT4G13070.1 39.759 166 91 4 593 757 145 302 7.21e-23 101
Msa0030000 AT2G28480.1 38.686 137 81 1 628 764 161 294 4.57e-21 96.7
Msa0030000 AT3G27550.2 36.364 143 81 4 627 767 144 278 1.14e-15 81.6
Msa0030000 AT3G27550.3 36.364 143 81 4 627 767 88 222 1.17e-15 81.3
Msa0030000 AT3G27550.1 36.364 143 81 4 627 767 88 222 1.17e-15 81.3
Msa0030000 AT5G54890.1 35.664 143 75 7 165 302 104 234 7.82e-11 65.1

Find 212 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCAAGAAGTCTTTATTTC+TGG 0.089553 1_1:-55878658 None:intergenic
GTTGAGAAATTGAAGAAATT+TGG 0.119699 1_1:+55876321 Msa0030000:CDS
TCTTCATCGGTTATACTTTC+AGG 0.150823 1_1:-55879346 None:intergenic
GAAGAAGGAGTGATAGAAAA+AGG 0.162996 1_1:+55876375 Msa0030000:CDS
TAATTGCTTATACACTATTA+AGG 0.248837 1_1:+55881957 Msa0030000:three_prime_UTR
CTCCAGAAATAAAGACTTCT+TGG 0.255053 1_1:+55878656 Msa0030000:CDS
TGGTTGTTCTTACTCTGTTC+TGG 0.271808 1_1:-55875857 None:intergenic
CCCTTCAGAGTTCTTCCTTT+CGG 0.281539 1_1:+55877772 Msa0030000:CDS
TTGAGAAATTGAAGAAATTT+GGG 0.281718 1_1:+55876322 Msa0030000:CDS
AATTATCAAGGTTCTGGAAA+TGG 0.293760 1_1:+55876228 Msa0030000:CDS
AAGACACCTCCACCTTCATT+AGG 0.294774 1_1:-55879297 None:intergenic
ATGAAAGCTTTCTTACTTCT+TGG 0.300263 1_1:+55879400 Msa0030000:CDS
TTAACATATGCTTGAGGAAT+AGG 0.312732 1_1:+55882049 Msa0030000:three_prime_UTR
GATATTCTATACTTGTTTAC+CGG 0.312793 1_1:+55879785 Msa0030000:CDS
GAAATTGAAGATGAAGATTC+TGG 0.316685 1_1:-55875877 None:intergenic
ATGCTTCCTCCAACTGTTCC+TGG 0.321744 1_1:+55877739 Msa0030000:CDS
CTCTTTGTCAAGAGATTCTT+CGG 0.322123 1_1:-55879841 None:intergenic
AGATTTATGTTTCGCAAGTT+AGG 0.324411 1_1:+55879370 Msa0030000:CDS
AGCTGAGAGTGGTGGTGTTC+TGG 0.328282 1_1:+55879738 Msa0030000:CDS
TGTTTATTCTGTTGTATTGA+AGG 0.336472 1_1:-55877460 None:intergenic
CTCCTCATCCTGCATTGCTT+TGG 0.339324 1_1:-55878748 None:intergenic
GGAAGACTTCTGAGATTGTT+AGG 0.341719 1_1:+55876724 Msa0030000:CDS
AGATGAAGTAGACAAGTTAT+TGG 0.342599 1_1:+55877654 Msa0030000:CDS
TCATCTTCATAACTGAGTTT+TGG 0.351011 1_1:-55877637 None:intergenic
GAAGAGGATGCATGAGATAT+TGG 0.355195 1_1:+55876779 Msa0030000:CDS
ATCAATAGTACGTACTATTT+CGG 0.357584 1_1:-55881335 None:intergenic
CCATTTGGGATTGGAAGTTA+TGG 0.366402 1_1:+55876471 Msa0030000:CDS
AAACTGGTGGTCTGGTGATT+TGG 0.369744 1_1:+55877389 Msa0030000:CDS
CGGAGAGAATGATGAAAGTT+AGG 0.370791 1_1:-55876021 None:intergenic
ATGTATGTATATACATTTGT+TGG 0.380642 1_1:+55881990 Msa0030000:three_prime_UTR
CCAATCCCAAATGGTGATTC+CGG 0.385507 1_1:-55876462 None:intergenic
GAATGAAGAGTGGAAATTAA+AGG 0.385736 1_1:-55875931 None:intergenic
TCAGCGGAGGCTGGGACTCT+TGG 0.390512 1_1:+55878831 Msa0030000:CDS
ATTATCAAGGTTCTGGAAAT+GGG 0.399633 1_1:+55876229 Msa0030000:CDS
CTTCATCGGTTATACTTTCA+GGG 0.406225 1_1:-55879345 None:intergenic
TTTCGCCGGAATCACCATTT+GGG 0.408552 1_1:+55876457 Msa0030000:CDS
TATCAGTGCAGAAACTCTTA+TGG 0.409703 1_1:-55876149 None:intergenic
CTTTGTGAGGCAAATTCCTC+AGG 0.411665 1_1:-55881762 None:intergenic
GGGTCTGCTCTGCTTTCTGA+TGG 0.412809 1_1:-55879325 None:intergenic
ATTGTATAACAGATTAGATT+CGG 0.413344 1_1:+55881490 Msa0030000:CDS
CAATTATCTTGACCAGTTCC+CGG 0.415828 1_1:-55879666 None:intergenic
GAGACCGACACTTGGTTTCA+AGG 0.416038 1_1:+55877798 Msa0030000:CDS
CTTGACAAAGAGAAAGGCTT+TGG 0.418224 1_1:+55879852 Msa0030000:CDS
GAAAACCCACCTCTTGTATT+AGG 0.419315 1_1:-55876438 None:intergenic
GAAGAAGAGTAAGACTTCTA+TGG 0.420084 1_1:+55876575 Msa0030000:CDS
ACTAGTAGTGGATAGAAAAC+TGG 0.422425 1_1:-55875810 None:intergenic
CCAGGCCAATCTGTATATCT+AGG 0.423225 1_1:-55877688 None:intergenic
TCAGAGTTGTCAGCGGAGGC+TGG 0.425100 1_1:+55878822 Msa0030000:CDS
TTCAACTTTGCAAAGTAAAG+TGG 0.426017 1_1:+55881300 Msa0030000:CDS
GTGGTGAAGTGAGGTTTCCT+TGG 0.428101 1_1:+55876505 Msa0030000:CDS
TCAACTTCTTCATCCACTAC+TGG 0.428246 1_1:-55876534 None:intergenic
GCCTCACAAAGTTGAAGGTC+AGG 0.432274 1_1:+55881774 Msa0030000:exon
GGTCTGGTGATTTGGAGGTC+TGG 0.432516 1_1:+55877397 Msa0030000:CDS
TAAAGGATGATTATTGTGTT+GGG 0.434179 1_1:-55875914 None:intergenic
TTAAAGGATGATTATTGTGT+TGG 0.434622 1_1:-55875915 None:intergenic
TGGCAGTGACACTCAATTCA+TGG 0.436703 1_1:+55881840 Msa0030000:three_prime_UTR
CTCTTCTGCCATTCTCTCAC+TGG 0.438822 1_1:-55878058 None:intergenic
CCGGAATCACCATTTGGGAT+TGG 0.439424 1_1:+55876462 Msa0030000:CDS
AACAGAATAAACAGTTATAT+AGG 0.443141 1_1:+55877470 Msa0030000:CDS
TCAGTTGACAAAGTTTCAAA+AGG 0.445552 1_1:+55879763 Msa0030000:CDS
AGACACCTCCACCTTCATTA+GGG 0.451516 1_1:-55879296 None:intergenic
TGGGACTCTTGGCGAAACTT+TGG 0.452256 1_1:+55878842 Msa0030000:CDS
TGCACTTGCACTGGAAGTAC+CGG 0.454136 1_1:+55879647 Msa0030000:CDS
CTTCTCTACGAAGGATTGCT+AGG 0.455152 1_1:+55877827 Msa0030000:CDS
TTCTTCGGTCTCATCATTGA+AGG 0.455321 1_1:-55879826 None:intergenic
ATTGTTAGGCTTAAGTTTGA+AGG 0.455427 1_1:+55876738 Msa0030000:CDS
ATTGAGCATGAACTTATCAA+TGG 0.464762 1_1:-55881909 None:intergenic
AACTCTGATGTATTAATAGC+TGG 0.465778 1_1:-55878807 None:intergenic
AACTCTGTTTCCTTGTACAG+AGG 0.467317 1_1:+55877421 Msa0030000:CDS
GCACTGGAAGTACCGGGAAC+TGG 0.473145 1_1:+55879654 Msa0030000:CDS
TTCTAACTTTCTAACGATGT+TGG 0.473608 1_1:-55878946 None:intergenic
ATTTGTTGGTTAAGTTCTCT+AGG 0.473943 1_1:+55882004 Msa0030000:three_prime_UTR
CATTCTTTCCCTCTCTAGCA+AGG 0.474225 1_1:-55878724 None:intergenic
AGCAAGGCTTGAGTGACATC+TGG 0.475279 1_1:-55878708 None:intergenic
ACTGGTCAAGATAATTGTTA+AGG 0.475719 1_1:+55879672 Msa0030000:CDS
AAGAAGCATAAGACGAGAAT+CGG 0.477508 1_1:+55876654 Msa0030000:CDS
AAGAAATTGTGGTGAAGAAA+CGG 0.481559 1_1:-55876041 None:intergenic
ACAGGCAGTGGCTCACATCC+AGG 0.483842 1_1:-55877706 None:intergenic
GGTAGAAACAAGCAGCTTCA+AGG 0.487654 1_1:+55877955 Msa0030000:intron
AATGAGAATATAAAAGAAGA+AGG 0.487703 1_1:+55876360 Msa0030000:CDS
CTGAAGGGAGGTTGGTAACC+AGG 0.489214 1_1:-55877757 None:intergenic
AAGAATGGCCAAAGCAATGC+AGG 0.492191 1_1:+55878740 Msa0030000:CDS
CAGAGTTGTCAGCGGAGGCT+GGG 0.492293 1_1:+55878823 Msa0030000:CDS
TTCCGGATGCAGAAACTGAC+AGG 0.492339 1_1:+55878621 Msa0030000:intron
CCACTACTAGTATCAAGCTT+TGG 0.493108 1_1:+55875822 Msa0030000:five_prime_UTR
GAGAATGGCAGAAGAGATCA+AGG 0.494655 1_1:+55878065 Msa0030000:CDS
GCTAACTACCAGTGAGAGAA+TGG 0.496690 1_1:+55878050 Msa0030000:CDS
ATCGATCGAAACCGCCATGC+GGG 0.497951 1_1:+55876199 Msa0030000:CDS
TTGAAGAGAGGACGAATTCG+CGG 0.500477 1_1:+55876553 Msa0030000:CDS
TGACGATTCACATAGGCATC+AGG 0.501133 1_1:-55881816 None:intergenic
GGCCAAAGCAATGCAGGATG+AGG 0.501682 1_1:+55878746 Msa0030000:CDS
AGAGTTTCTGCACTGATACA+TGG 0.502378 1_1:+55876154 Msa0030000:CDS
GTCTCATCATTGAAGGGCGC+TGG 0.502908 1_1:-55879819 None:intergenic
CTGGTGGTCTGGTGATTTGG+AGG 0.504053 1_1:+55877392 Msa0030000:CDS
GAATCTCTTGACAAAGAGAA+AGG 0.507492 1_1:+55879846 Msa0030000:CDS
ATAGAGAAAGTAAAGGAGGA+AGG 0.508637 1_1:+55881458 Msa0030000:CDS
TATACTTGTTTACCGGGGAA+AGG 0.509017 1_1:+55879792 Msa0030000:CDS
CATTCATGTAAATTCATCAA+TGG 0.510093 1_1:+55875957 Msa0030000:exon
CCATAACTTCCAATCCCAAA+TGG 0.510654 1_1:-55876471 None:intergenic
AAGTTAGGAGAAGTGTGAAA+TGG 0.513457 1_1:-55876006 None:intergenic
ACAAATAGAGAAAGTAAAGG+AGG 0.514034 1_1:+55881454 Msa0030000:CDS
AGTTAGGAGAAGTGTGAAAT+GGG 0.517464 1_1:-55876005 None:intergenic
AATTTGCCTCACAAAGTTGA+AGG 0.518599 1_1:+55881769 Msa0030000:CDS
TCGAAAACATGCACTTGCAC+TGG 0.520324 1_1:+55879638 Msa0030000:CDS
AAGTGTGAAATGGGTGAAGT+TGG 0.525049 1_1:-55875996 None:intergenic
GTGAGGCAAATTCCTCAGGT+TGG 0.525666 1_1:-55881758 None:intergenic
AAGACGAGAATCGGTGGTGG+TGG 0.526783 1_1:+55876663 Msa0030000:CDS
ATATTCTATACTTGTTTACC+GGG 0.530412 1_1:+55879786 Msa0030000:CDS
TCCACTACTGGTTTCTCCCA+AGG 0.538339 1_1:-55876522 None:intergenic
CTTGCTAGAGAGGGAAAGAA+TGG 0.538645 1_1:+55878725 Msa0030000:CDS
TGCAAAGTGGGGAAAGACAT+TGG 0.539254 1_1:+55878872 Msa0030000:CDS
GGGATTGGAAGTTATGGAAG+TGG 0.539360 1_1:+55876477 Msa0030000:CDS
GGTTGGTAACCAGGAACAGT+TGG 0.539492 1_1:-55877748 None:intergenic
TTTGGATGCAGATGCAAAGT+GGG 0.539561 1_1:+55878860 Msa0030000:CDS
CTCTTCCTGAGTCTGAATTG+AGG 0.540388 1_1:+55876607 Msa0030000:CDS
GGAAGCATATCCGCATCGAC+AGG 0.540888 1_1:-55877724 None:intergenic
CCTAGATATACAGATTGGCC+TGG 0.541076 1_1:+55877688 Msa0030000:CDS
GGGTGATGGTGGTAGTAGAA+TGG 0.541287 1_1:+55876290 Msa0030000:CDS
AAACATAAATCTCTCTTCAT+CGG 0.542564 1_1:-55879359 None:intergenic
CATTGATGAATTTACATGAA+TGG 0.545109 1_1:-55875956 None:intergenic
ACCTGACCTTCAACTTTGTG+AGG 0.546210 1_1:-55881775 None:intergenic
GTAGCTCACACCTCTGTACA+AGG 0.549963 1_1:-55877431 None:intergenic
GAGGATGCATGAGATATTGG+AGG 0.550479 1_1:+55876782 Msa0030000:CDS
GGCAGTGACACTCAATTCAT+GGG 0.551146 1_1:+55881841 Msa0030000:three_prime_UTR
TCACTCAAGCCTTGCTAGAG+AGG 0.551580 1_1:+55878715 Msa0030000:CDS
TTGATAAGATTCATGAGAGG+TGG 0.551714 1_1:+55876703 Msa0030000:CDS
AACCTCCTCAATTCAGACTC+AGG 0.552435 1_1:-55876612 None:intergenic
CTGATACATGGTTAAAACGC+TGG 0.556259 1_1:+55876166 Msa0030000:CDS
TTCTCTACGAAGGATTGCTA+GGG 0.556681 1_1:+55877828 Msa0030000:CDS
TCCGAAAGGAAGAACTCTGA+AGG 0.556767 1_1:-55877773 None:intergenic
GGAAGTTATGGAAGTGGTGA+TGG 0.559350 1_1:+55876483 Msa0030000:CDS
TGGTGAAGTGAGGTTTCCTT+GGG 0.559431 1_1:+55876506 Msa0030000:CDS
TGCTATTAATTTCCAACCTG+AGG 0.561229 1_1:+55881746 Msa0030000:CDS
TTCACTTCAAAATCATTCGA+AGG 0.561434 1_1:-55877526 None:intergenic
CTCTAGGATTGAATAAGTCA+AGG 0.562097 1_1:+55882020 Msa0030000:three_prime_UTR
GGCGCTGGTAATCCTTTCCC+CGG 0.562420 1_1:-55879804 None:intergenic
GAAGAACTCTGAAGGGAGGT+TGG 0.563635 1_1:-55877765 None:intergenic
TAGGTCCTAGATATACAGAT+TGG 0.563776 1_1:+55877683 Msa0030000:CDS
TTCGGAGTGAGACCGACACT+TGG 0.564308 1_1:+55877790 Msa0030000:CDS
ATGTTGCCTAATACAAGAGG+TGG 0.568407 1_1:+55876432 Msa0030000:CDS
GGAACAAATAGAGAAAGTAA+AGG 0.569961 1_1:+55881451 Msa0030000:intron
TGGATGAAGAAGTTGAAGAG+AGG 0.576446 1_1:+55876541 Msa0030000:CDS
TCTAGGATTGAATAAGTCAA+GGG 0.580496 1_1:+55882021 Msa0030000:three_prime_UTR
CAAAGCAATGCAGGATGAGG+AGG 0.581413 1_1:+55878749 Msa0030000:CDS
AGCTGAAAGAGCCCTAATGA+AGG 0.582758 1_1:+55879285 Msa0030000:CDS
GAAGTAGACAAGTTATTGGA+TGG 0.582788 1_1:+55877658 Msa0030000:CDS
CACTCAAGCCTTGCTAGAGA+GGG 0.584330 1_1:+55878716 Msa0030000:CDS
GTACAGAGGTGTGAGCTACA+AGG 0.584665 1_1:+55877435 Msa0030000:CDS
TTCATGGTTGCAGGTAGACG+TGG 0.590174 1_1:+55879598 Msa0030000:intron
GACAAGTTATTGGATGGTCT+AGG 0.590262 1_1:+55877664 Msa0030000:CDS
ATATCCGCATCGACAGGCAG+TGG 0.591204 1_1:-55877718 None:intergenic
TGATAATTTAAAACCCCGCA+TGG 0.591839 1_1:-55876213 None:intergenic
CCAAAGCTTGATACTAGTAG+TGG 0.592042 1_1:-55875822 None:intergenic
TGGTAACCAGGAACAGTTGG+AGG 0.592101 1_1:-55877745 None:intergenic
CTTTGGATGCAGATGCAAAG+TGG 0.592246 1_1:+55878859 Msa0030000:CDS
ACCAGGCTGAAAGAAAGATA+AGG 0.592259 1_1:+55879260 Msa0030000:intron
ATGAATGGATGAATGAAGAG+TGG 0.594016 1_1:-55875941 None:intergenic
GTGGTGATGGTGGTGAAGTG+AGG 0.598555 1_1:+55876496 Msa0030000:CDS
ATGCCTATGTGAATCGTCAA+TGG 0.599208 1_1:+55881820 Msa0030000:three_prime_UTR
CCGAAAGGAAGAACTCTGAA+GGG 0.601959 1_1:-55877772 None:intergenic
TTCCTGAGTCTGAATTGAGG+AGG 0.601987 1_1:+55876610 Msa0030000:CDS
AAGAGCCCTAATGAAGGTGG+AGG 0.602601 1_1:+55879291 Msa0030000:CDS
TCTTCGGTCTCATCATTGAA+GGG 0.605550 1_1:-55879825 None:intergenic
GAATCAGAAGTAAATTCAGA+AGG 0.606031 1_1:-55877550 None:intergenic
CATGTAGGCGGAGGATGATG+AGG 0.607642 1_1:+55881662 Msa0030000:intron
GCCTCCTTGAAACCAAGTGT+CGG 0.611476 1_1:-55877802 None:intergenic
TGAGAGAAGTAGAACAACTA+CGG 0.614641 1_1:+55878919 Msa0030000:CDS
AATGGGTGAAGTTGGCGAGT+GGG 0.618212 1_1:-55875988 None:intergenic
AGTTATGGAAGTGGTGATGG+TGG 0.618975 1_1:+55876486 Msa0030000:CDS
TGCAGCCATGATCAAACTGT+GGG 0.619304 1_1:+55877984 Msa0030000:CDS
CTGCCATTGACGATTCACAT+AGG 0.619380 1_1:-55881823 None:intergenic
GCACTTGCACTGGAAGTACC+GGG 0.621505 1_1:+55879648 Msa0030000:CDS
CAACCTAATGCAAAATGTGG+AGG 0.623738 1_1:-55877856 None:intergenic
AGGAGGCAACTTCTCTACGA+AGG 0.627538 1_1:+55877818 Msa0030000:CDS
AACCTAATGCAAAATGTGGA+GGG 0.630249 1_1:-55877855 None:intergenic
ATGCTGCACTTAACATGAAG+AGG 0.634551 1_1:+55876763 Msa0030000:CDS
TCCTTGGGAGAAACCAGTAG+TGG 0.634853 1_1:+55876521 Msa0030000:CDS
TACATCAGAGTTGTCAGCGG+AGG 0.635595 1_1:+55878818 Msa0030000:CDS
GACCAACCTAATGCAAAATG+TGG 0.636495 1_1:-55877859 None:intergenic
GGAATGTTGCCTAATACAAG+AGG 0.637246 1_1:+55876429 Msa0030000:CDS
TGTTTCGCAAGTTAGGATTG+CGG 0.639050 1_1:+55879377 Msa0030000:CDS
AGTGTCGGTCTCACTCCGAA+AGG 0.639614 1_1:-55877787 None:intergenic
TCGATCGAAACCGCCATGCG+GGG 0.640811 1_1:+55876200 Msa0030000:CDS
AAGCATAAGACGAGAATCGG+TGG 0.644894 1_1:+55876657 Msa0030000:CDS
AAATGGGTGAAGTTGGCGAG+TGG 0.645078 1_1:-55875989 None:intergenic
CTGCAGCCATGATCAAACTG+TGG 0.648025 1_1:+55877983 Msa0030000:CDS
AATCGAGCTTCAACGACATG+AGG 0.650049 1_1:+55879882 Msa0030000:CDS
TTTGATAGCTCTGATGATGA+GGG 0.651437 1_1:+55876270 Msa0030000:CDS
TGTTGCCTAATACAAGAGGT+GGG 0.652697 1_1:+55876433 Msa0030000:CDS
GGTGCTGACAGAAACTTCGA+AGG 0.652731 1_1:-55877505 None:intergenic
TCTGATGATGAGGGTGATGG+TGG 0.657403 1_1:+55876279 Msa0030000:CDS
TGAAAGAGCCCTAATGAAGG+TGG 0.658133 1_1:+55879288 Msa0030000:CDS
AGCTCTGATGATGAGGGTGA+TGG 0.659433 1_1:+55876276 Msa0030000:CDS
GAAGAGTAAGACTTCTATGG+CGG 0.662513 1_1:+55876578 Msa0030000:CDS
CTAGCACTTGAAGCTGAGAG+TGG 0.663111 1_1:+55879727 Msa0030000:CDS
GCGAAAGTTGCACTCAAACG+TGG 0.665701 1_1:+55878021 Msa0030000:CDS
CATAAGACGAGAATCGGTGG+TGG 0.666864 1_1:+55876660 Msa0030000:CDS
GCACTTGAAGCTGAGAGTGG+TGG 0.667962 1_1:+55879730 Msa0030000:CDS
CTAGGATTGAATAAGTCAAG+GGG 0.670029 1_1:+55882022 Msa0030000:three_prime_UTR
GGTCTGTTAACATATGCTTG+AGG 0.672068 1_1:+55882043 Msa0030000:three_prime_UTR
CGGATGCAGAAACTGACAGG+TGG 0.683372 1_1:+55878624 Msa0030000:intron
AATCGATCGAAACCGCCATG+CGG 0.685471 1_1:+55876198 Msa0030000:CDS
TACAGATGATGATAACTCTG+AGG 0.690871 1_1:+55881520 Msa0030000:CDS
TTGGATGCAGATGCAAAGTG+GGG 0.693666 1_1:+55878861 Msa0030000:CDS
AAAGGAAGAACTCTGAAGGG+AGG 0.696481 1_1:-55877769 None:intergenic
TGAGCCACTGCCTGTCGATG+CGG 0.707365 1_1:+55877714 Msa0030000:CDS
TATTCTATACTTGTTTACCG+GGG 0.713369 1_1:+55879787 Msa0030000:CDS
TAATACATCAGAGTTGTCAG+CGG 0.714007 1_1:+55878815 Msa0030000:CDS
TAATTTAAAACCCCGCATGG+CGG 0.722080 1_1:-55876210 None:intergenic
TCTCTACGAAGGATTGCTAG+GGG 0.724320 1_1:+55877829 Msa0030000:CDS
ACCGACACTTGGTTTCAAGG+AGG 0.731383 1_1:+55877801 Msa0030000:CDS
TTGTTGATAAGATTCATGAG+AGG 0.747036 1_1:+55876700 Msa0030000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATATTTTTTTTTATTTC+CGG + chr1_1:55878604-55878623 Msa0030000:intron 10.0%
!! TATACAGTATTTATATTAAT+TGG - chr1_1:55879993-55880012 None:intergenic 10.0%
!! ATAAATTAATTGTGAAATGT+AGG + chr1_1:55877934-55877953 Msa0030000:intron 15.0%
!! AGATATAAGTATTAAGTTAT+AGG + chr1_1:55878503-55878522 Msa0030000:intron 15.0%
!! ATTGAAAATAATGAATATCT+GGG - chr1_1:55879110-55879129 None:intergenic 15.0%
!! TATTGAAAATAATGAATATC+TGG - chr1_1:55879111-55879130 None:intergenic 15.0%
!!! ATTTACAAACTTTTACAAAA+AGG + chr1_1:55880073-55880092 Msa0030000:intron 15.0%
!! ATGTATGTTAAATATCTAAT+CGG - chr1_1:55880374-55880393 None:intergenic 15.0%
!! TACATAAAAGTTTATCAATT+TGG + chr1_1:55880389-55880408 Msa0030000:intron 15.0%
!!! AAAGATTTTCTATAACATTA+AGG - chr1_1:55880502-55880521 None:intergenic 15.0%
!! TATTTACACACAAATATAAA+AGG - chr1_1:55881635-55881654 None:intergenic 15.0%
!!! AGATAAGTGAAATTTTTTGT+GGG - chr1_1:55876105-55876124 None:intergenic 20.0%
!!! AAGATAAGTGAAATTTTTTG+TGG - chr1_1:55876106-55876125 None:intergenic 20.0%
!! AAACTCTTATGGTAAAAAAT+GGG - chr1_1:55876141-55876160 None:intergenic 20.0%
!! TTGAGAAATTGAAGAAATTT+GGG + chr1_1:55876322-55876341 Msa0030000:CDS 20.0%
!! AATGAGAATATAAAAGAAGA+AGG + chr1_1:55876360-55876379 Msa0030000:CDS 20.0%
!!! GATATATTTTATGTAGAAGA+AGG + chr1_1:55876408-55876427 Msa0030000:CDS 20.0%
!! AACAGAATAAACAGTTATAT+AGG + chr1_1:55877470-55877489 Msa0030000:CDS 20.0%
!! ACAAAATTTATTAGTTGAAC+CGG - chr1_1:55878108-55878127 None:intergenic 20.0%
!! TATACTTAATGTCAACTTAA+TGG - chr1_1:55878271-55878290 None:intergenic 20.0%
!! AATTTCAGATATAAACTTGA+AGG - chr1_1:55878993-55879012 None:intergenic 20.0%
!! TTGAAAATAATGAATATCTG+GGG - chr1_1:55879109-55879128 None:intergenic 20.0%
!!! GTAATGTAAATTTTTCTATC+TGG - chr1_1:55879512-55879531 None:intergenic 20.0%
!! ATCAAAATGAATGTAATTCA+TGG + chr1_1:55879582-55879601 Msa0030000:intron 20.0%
!! TATTACAATTAGCATTTGAT+TGG - chr1_1:55879930-55879949 None:intergenic 20.0%
!! GTATTGAATTCAGAATAAAT+AGG - chr1_1:55880209-55880228 None:intergenic 20.0%
!! TGTATGTTAAATATCTAATC+GGG - chr1_1:55880373-55880392 None:intergenic 20.0%
!!! TGGCAAAACAATTTTTTTTT+TGG + chr1_1:55880443-55880462 Msa0030000:intron 20.0%
!! ATTGTATAACAGATTAGATT+CGG + chr1_1:55881490-55881509 Msa0030000:CDS 20.0%
!! TGTAAATATCTTATACATGT+AGG + chr1_1:55881647-55881666 Msa0030000:intron 20.0%
!! TAATTGCTTATACACTATTA+AGG + chr1_1:55881957-55881976 Msa0030000:three_prime_UTR 20.0%
!! ATGTATGTATATACATTTGT+TGG + chr1_1:55881990-55882009 Msa0030000:three_prime_UTR 20.0%
!!! TTTTCTATAAGCTAAAATGA+AGG - chr1_1:55882076-55882095 None:intergenic 20.0%
! TAAAGGATGATTATTGTGTT+GGG - chr1_1:55875917-55875936 None:intergenic 25.0%
! TTAAAGGATGATTATTGTGT+TGG - chr1_1:55875918-55875937 None:intergenic 25.0%
! CATTGATGAATTTACATGAA+TGG - chr1_1:55875959-55875978 None:intergenic 25.0%
! CATTCATGTAAATTCATCAA+TGG + chr1_1:55875957-55875976 Msa0030000:exon 25.0%
!!! TTTTGAAAGTGAAGCTTTTA+TGG - chr1_1:55876080-55876099 None:intergenic 25.0%
! GAAACTCTTATGGTAAAAAA+TGG - chr1_1:55876142-55876161 None:intergenic 25.0%
!!! GTTTTAAATTATCAAGGTTC+TGG + chr1_1:55876222-55876241 Msa0030000:CDS 25.0%
! GTTGAGAAATTGAAGAAATT+TGG + chr1_1:55876321-55876340 Msa0030000:CDS 25.0%
! TTGAATATACAAGAAGCAAA+AGG - chr1_1:55876820-55876839 None:intergenic 25.0%
! AGGTATAAATGCATACAATT+CGG - chr1_1:55876914-55876933 None:intergenic 25.0%
! ATACCTCAGTGTTTAAATAT+AGG + chr1_1:55876928-55876947 Msa0030000:intron 25.0%
! ATCACAGAAATTAAGAAAGT+TGG + chr1_1:55876965-55876984 Msa0030000:intron 25.0%
! ATAAACAAACTCTATCTTGA+AGG - chr1_1:55877039-55877058 None:intergenic 25.0%
!! ATATTTTGTAGACATTTCAC+TGG + chr1_1:55877277-55877296 Msa0030000:intron 25.0%
! TACTACATTCAGAAAAAAAC+TGG + chr1_1:55877373-55877392 Msa0030000:intron 25.0%
! TGTTTATTCTGTTGTATTGA+AGG - chr1_1:55877463-55877482 None:intergenic 25.0%
! AAAAACATCGTTGGAAAAAT+TGG + chr1_1:55877579-55877598 Msa0030000:CDS 25.0%
! CAAAATTTATTAGTTGAACC+GGG - chr1_1:55878107-55878126 None:intergenic 25.0%
! AAAATCTATGCTTTAGTGAA+TGG - chr1_1:55878194-55878213 None:intergenic 25.0%
! AGTTGACATTAAGTATAAAG+AGG + chr1_1:55878274-55878293 Msa0030000:intron 25.0%
! AACACAAACAAAATATGATC+AGG + chr1_1:55878532-55878551 Msa0030000:intron 25.0%
! ACAGCTATAACACAAAATTT+AGG - chr1_1:55879037-55879056 None:intergenic 25.0%
!! AAATTTTGTGTTATAGCTGT+TGG + chr1_1:55879037-55879056 Msa0030000:intron 25.0%
! TATTATGTACACAATGTTAG+TGG + chr1_1:55879129-55879148 Msa0030000:intron 25.0%
!!! TATTCATTATTGTCGACTTT+TGG + chr1_1:55879167-55879186 Msa0030000:intron 25.0%
! AAACATAAATCTCTCTTCAT+CGG - chr1_1:55879362-55879381 None:intergenic 25.0%
!! TGACTTTTATTGAGTAATCT+TGG + chr1_1:55880018-55880037 Msa0030000:intron 25.0%
!! GACTTTTATTGAGTAATCTT+GGG + chr1_1:55880019-55880038 Msa0030000:intron 25.0%
! TGTGTTAAGATATCTGATAA+AGG - chr1_1:55880343-55880362 None:intergenic 25.0%
! TCAAGATTACTCTTAGAATT+TGG + chr1_1:55880572-55880591 Msa0030000:intron 25.0%
! CAAGATTACTCTTAGAATTT+GGG + chr1_1:55880573-55880592 Msa0030000:intron 25.0%
! GTGTAGTGTTTATAAAGATT+GGG - chr1_1:55880646-55880665 None:intergenic 25.0%
! TGTGTAGTGTTTATAAAGAT+TGG - chr1_1:55880647-55880666 None:intergenic 25.0%
! GTGTAGTGTTTATAAAGATT+GGG - chr1_1:55880646-55880665 None:intergenic 25.0%
!!! TATAGTGGGTAAATTGATAA+AGG + chr1_1:55881117-55881136 Msa0030000:intron 25.0%
! ATCAATAGTACGTACTATTT+CGG - chr1_1:55881338-55881357 None:intergenic 25.0%
! CATATAATATACAGCTTAGA+TGG - chr1_1:55881385-55881404 None:intergenic 25.0%
! CATCTAAGCTGTATATTATA+TGG + chr1_1:55881383-55881402 Msa0030000:intron 25.0%
! TGTATATTATATGGAAACCT+AGG + chr1_1:55881392-55881411 Msa0030000:intron 25.0%
! AAATATCTTATACATGTAGG+CGG + chr1_1:55881650-55881669 Msa0030000:intron 25.0%
GAAATTGAAGATGAAGATTC+TGG - chr1_1:55875880-55875899 None:intergenic 30.0%
GAATGAAGAGTGGAAATTAA+AGG - chr1_1:55875934-55875953 None:intergenic 30.0%
AAGAAATTGTGGTGAAGAAA+CGG - chr1_1:55876044-55876063 None:intergenic 30.0%
TGAAGAAGAAGAAGAAATTG+TGG - chr1_1:55876055-55876074 None:intergenic 30.0%
!! AATTATCAAGGTTCTGGAAA+TGG + chr1_1:55876228-55876247 Msa0030000:CDS 30.0%
!! ATTATCAAGGTTCTGGAAAT+GGG + chr1_1:55876229-55876248 Msa0030000:CDS 30.0%
AAGAAGGAGTGATAGAAAAA+GGG + chr1_1:55876376-55876395 Msa0030000:CDS 30.0%
! TTGTTGATAAGATTCATGAG+AGG + chr1_1:55876700-55876719 Msa0030000:CDS 30.0%
ATTGTTAGGCTTAAGTTTGA+AGG + chr1_1:55876738-55876757 Msa0030000:CDS 30.0%
GGTATAAATGCATACAATTC+GGG - chr1_1:55876913-55876932 None:intergenic 30.0%
TCCATCGTAGTATTTATTGT+TGG + chr1_1:55877062-55877081 Msa0030000:intron 30.0%
ACCAACAATAAATACTACGA+TGG - chr1_1:55877066-55877085 None:intergenic 30.0%
!! GTAGTATTTATTGTTGGTTC+AGG + chr1_1:55877068-55877087 Msa0030000:intron 30.0%
TGCAGTTGAAAATTCAGATT+AGG + chr1_1:55877116-55877135 Msa0030000:intron 30.0%
! TCAAGAGGGTCTTATATTTA+GGG + chr1_1:55877164-55877183 Msa0030000:intron 30.0%
AATTGTGCAATCTTCTATGA+TGG + chr1_1:55877245-55877264 Msa0030000:intron 30.0%
TACATTCAGAAAAAAACTGG+TGG + chr1_1:55877376-55877395 Msa0030000:intron 30.0%
TTCACTTCAAAATCATTCGA+AGG - chr1_1:55877529-55877548 None:intergenic 30.0%
GAATCAGAAGTAAATTCAGA+AGG - chr1_1:55877553-55877572 None:intergenic 30.0%
! TCATCTTCATAACTGAGTTT+TGG - chr1_1:55877640-55877659 None:intergenic 30.0%
AGATGAAGTAGACAAGTTAT+TGG + chr1_1:55877654-55877673 Msa0030000:CDS 30.0%
! TGTGTACATTTTCAAACAGA+AGG - chr1_1:55878217-55878236 None:intergenic 30.0%
TACAAACTAACATAGTGTAC+TGG - chr1_1:55878306-55878325 None:intergenic 30.0%
TTTGTAATCCATAAGTGCTA+GGG + chr1_1:55878320-55878339 Msa0030000:intron 30.0%
ACATTGTGATAAACTTAGTG+TGG + chr1_1:55878410-55878429 Msa0030000:intron 30.0%
!! AGATAGTTTTGCAATTAGCT+TGG + chr1_1:55878454-55878473 Msa0030000:intron 30.0%
AACTCTGATGTATTAATAGC+TGG - chr1_1:55878810-55878829 None:intergenic 30.0%
TTCTAACTTTCTAACGATGT+TGG - chr1_1:55878949-55878968 None:intergenic 30.0%
!! TTTAGGCTTGTTGGTAATTA+GGG - chr1_1:55879020-55879039 None:intergenic 30.0%
!! ATTTAGGCTTGTTGGTAATT+AGG - chr1_1:55879021-55879040 None:intergenic 30.0%
AACACAAAATTTAGGCTTGT+TGG - chr1_1:55879029-55879048 None:intergenic 30.0%
TTATAGCTGTTGGACATATT+TGG + chr1_1:55879047-55879066 Msa0030000:intron 30.0%
TTGGTACTTAATTTCACACT+AGG + chr1_1:55879186-55879205 Msa0030000:intron 30.0%
CAATCACGTAAATTCTAAAC+TGG - chr1_1:55879220-55879239 None:intergenic 30.0%
AGATTTATGTTTCGCAAGTT+AGG + chr1_1:55879370-55879389 Msa0030000:CDS 30.0%
ATGAAAGCTTTCTTACTTCT+TGG + chr1_1:55879400-55879419 Msa0030000:CDS 30.0%
! ATTCATGATAATGATATGCG+AGG + chr1_1:55879543-55879562 Msa0030000:intron 30.0%
! TTCATGATAATGATATGCGA+GGG + chr1_1:55879544-55879563 Msa0030000:intron 30.0%
ACTGGTCAAGATAATTGTTA+AGG + chr1_1:55879672-55879691 Msa0030000:CDS 30.0%
TCAGTTGACAAAGTTTCAAA+AGG + chr1_1:55879763-55879782 Msa0030000:CDS 30.0%
TACAAAAAGGAATATTGTGC+TGG + chr1_1:55880086-55880105 Msa0030000:intron 30.0%
TGATAAAGGAACAATACAGA+AGG - chr1_1:55880329-55880348 None:intergenic 30.0%
CCAGAAAAAATGAAAGAATG+GGG - chr1_1:55880426-55880445 None:intergenic 30.0%
GCCAGAAAAAATGAAAGAAT+GGG - chr1_1:55880427-55880446 None:intergenic 30.0%
TGCCAGAAAAAATGAAAGAA+TGG - chr1_1:55880428-55880447 None:intergenic 30.0%
CTAAATCAACCTTAGAAAAC+CGG + chr1_1:55880602-55880621 Msa0030000:intron 30.0%
TAGGACAGATTCTTAGAATT+TGG + chr1_1:55880881-55880900 Msa0030000:intron 30.0%
AGGACAGATTCTTAGAATTT+GGG + chr1_1:55880882-55880901 Msa0030000:intron 30.0%
CGTGTAGTGTTTATAAAGAT+TGG - chr1_1:55880956-55880975 None:intergenic 30.0%
ATCTTTATAAACACTACACG+TGG + chr1_1:55880956-55880975 Msa0030000:intron 30.0%
TCAATTTACCCACTATATCT+TGG - chr1_1:55881114-55881133 None:intergenic 30.0%
ACATATGCACATTTACAAGA+TGG - chr1_1:55881190-55881209 None:intergenic 30.0%
TTGTCAATAAAATGAGGCAA+AGG - chr1_1:55881259-55881278 None:intergenic 30.0%
TTCAACTTTGCAAAGTAAAG+TGG + chr1_1:55881300-55881319 Msa0030000:CDS 30.0%
CTATTTGTTCCTGTGAAAAT+TGG - chr1_1:55881442-55881461 None:intergenic 30.0%
GGAACAAATAGAGAAAGTAA+AGG + chr1_1:55881451-55881470 Msa0030000:intron 30.0%
ACAAATAGAGAAAGTAAAGG+AGG + chr1_1:55881454-55881473 Msa0030000:CDS 30.0%
ATTGAGCATGAACTTATCAA+TGG - chr1_1:55881912-55881931 None:intergenic 30.0%
! ATTTGTTGGTTAAGTTCTCT+AGG + chr1_1:55882004-55882023 Msa0030000:three_prime_UTR 30.0%
! TCTAGGATTGAATAAGTCAA+GGG + chr1_1:55882021-55882040 Msa0030000:three_prime_UTR 30.0%
TTAACATATGCTTGAGGAAT+AGG + chr1_1:55882049-55882068 Msa0030000:three_prime_UTR 30.0%
!! ACTAGTAGTGGATAGAAAAC+TGG - chr1_1:55875813-55875832 None:intergenic 35.0%
!!! TCTTACTCTGTTCTGGTTTT+TGG - chr1_1:55875853-55875872 None:intergenic 35.0%
ATGAATGGATGAATGAAGAG+TGG - chr1_1:55875944-55875963 None:intergenic 35.0%
! AGTTAGGAGAAGTGTGAAAT+GGG - chr1_1:55876008-55876027 None:intergenic 35.0%
! AAGTTAGGAGAAGTGTGAAA+TGG - chr1_1:55876009-55876028 None:intergenic 35.0%
TATCAGTGCAGAAACTCTTA+TGG - chr1_1:55876152-55876171 None:intergenic 35.0%
! TGATAATTTAAAACCCCGCA+TGG - chr1_1:55876216-55876235 None:intergenic 35.0%
!!! TGCGGGGTTTTAAATTATCA+AGG + chr1_1:55876216-55876235 Msa0030000:CDS 35.0%
!!! TTTTGATAGCTCTGATGATG+AGG + chr1_1:55876269-55876288 Msa0030000:CDS 35.0%
!! TTTGATAGCTCTGATGATGA+GGG + chr1_1:55876270-55876289 Msa0030000:CDS 35.0%
GAAGAAGGAGTGATAGAAAA+AGG + chr1_1:55876375-55876394 Msa0030000:CDS 35.0%
GAAGAAGAGTAAGACTTCTA+TGG + chr1_1:55876575-55876594 Msa0030000:CDS 35.0%
! AAGAAGCATAAGACGAGAAT+CGG + chr1_1:55876654-55876673 Msa0030000:CDS 35.0%
TTGATAAGATTCATGAGAGG+TGG + chr1_1:55876703-55876722 Msa0030000:CDS 35.0%
TTGAAAAACCAGTGCAACTT+AGG + chr1_1:55876861-55876880 Msa0030000:intron 35.0%
TGAAAAACCAGTGCAACTTA+GGG + chr1_1:55876862-55876881 Msa0030000:intron 35.0%
TAAATGCATACAATTCGGGT+TGG - chr1_1:55876909-55876928 None:intergenic 35.0%
GGTCCTATATTTAAACACTG+AGG - chr1_1:55876934-55876953 None:intergenic 35.0%
TTTCTGTGATTTAGTCGACA+AGG - chr1_1:55876955-55876974 None:intergenic 35.0%
! CTCAAGAGGGTCTTATATTT+AGG + chr1_1:55877163-55877182 Msa0030000:intron 35.0%
! GGTCTTATATTTAGGGATGA+AGG + chr1_1:55877171-55877190 Msa0030000:intron 35.0%
ACAATTACGCATCACTACAT+TGG - chr1_1:55877231-55877250 None:intergenic 35.0%
! TTATTGATAGTCAAGGATGC+AGG - chr1_1:55877328-55877347 None:intergenic 35.0%
TCCTTGACTATCAATAACTG+TGG + chr1_1:55877331-55877350 Msa0030000:intron 35.0%
!! TTCTGAGACAAAAACATCGT+TGG + chr1_1:55877570-55877589 Msa0030000:CDS 35.0%
GAAGTAGACAAGTTATTGGA+TGG + chr1_1:55877658-55877677 Msa0030000:CDS 35.0%
TAGGTCCTAGATATACAGAT+TGG + chr1_1:55877683-55877702 Msa0030000:CDS 35.0%
AACCTAATGCAAAATGTGGA+GGG - chr1_1:55877858-55877877 None:intergenic 35.0%
! TTTTTCCCACAGTTTGATCA+TGG - chr1_1:55877992-55878011 None:intergenic 35.0%
!! TTGCATCGTTTGCTATATGT+AGG + chr1_1:55878242-55878261 Msa0030000:intron 35.0%
GTTTGTAATCCATAAGTGCT+AGG + chr1_1:55878319-55878338 Msa0030000:intron 35.0%
ATCAACAAATCCTCACATAG+TGG - chr1_1:55878585-55878604 None:intergenic 35.0%
CTCCAGAAATAAAGACTTCT+TGG + chr1_1:55878656-55878675 Msa0030000:CDS 35.0%
! GACCAAGAAGTCTTTATTTC+TGG - chr1_1:55878661-55878680 None:intergenic 35.0%
!! ACTTCTTGGTCTTTTATCGA+GGG + chr1_1:55878670-55878689 Msa0030000:CDS 35.0%
TAATACATCAGAGTTGTCAG+CGG + chr1_1:55878815-55878834 Msa0030000:CDS 35.0%
TGAGAGAAGTAGAACAACTA+CGG + chr1_1:55878919-55878938 Msa0030000:CDS 35.0%
GTACACAATGTTAGTGGTAT+CGG + chr1_1:55879135-55879154 Msa0030000:intron 35.0%
! CTTCATCGGTTATACTTTCA+GGG - chr1_1:55879348-55879367 None:intergenic 35.0%
! TCTTCATCGGTTATACTTTC+AGG - chr1_1:55879349-55879368 None:intergenic 35.0%
TGAATGTAATTCATGGTTGC+AGG + chr1_1:55879589-55879608 Msa0030000:intron 35.0%
CTCTTTGTCAAGAGATTCTT+CGG - chr1_1:55879844-55879863 None:intergenic 35.0%
GAATCTCTTGACAAAGAGAA+AGG + chr1_1:55879846-55879865 Msa0030000:CDS 35.0%
TCGAATGCAACAAATTGAAG+TGG - chr1_1:55879957-55879976 None:intergenic 35.0%
TGTTGCATTCGAATAGAAAC+TGG + chr1_1:55879965-55879984 Msa0030000:intron 35.0%
TATCAAGTGGTTAATTGGGT+GGG - chr1_1:55880166-55880185 None:intergenic 35.0%
TTATCAAGTGGTTAATTGGG+TGG - chr1_1:55880167-55880186 None:intergenic 35.0%
GGGTTATCAAGTGGTTAATT+GGG - chr1_1:55880170-55880189 None:intergenic 35.0%
TGGGTTATCAAGTGGTTAAT+TGG - chr1_1:55880171-55880190 None:intergenic 35.0%
CAGAATAAATAGGAAAGCGA+AGG - chr1_1:55880199-55880218 None:intergenic 35.0%
AAAGGAACAATACAGAAGGA+GGG - chr1_1:55880325-55880344 None:intergenic 35.0%
TAAAGGAACAATACAGAAGG+AGG - chr1_1:55880326-55880345 None:intergenic 35.0%
GTTAAATATCTAATCGGGAG+TGG - chr1_1:55880368-55880387 None:intergenic 35.0%
!! ATGAAAGAATGGGGAGTATT+AGG - chr1_1:55880417-55880436 None:intergenic 35.0%
!!! CCCCATTCTTTCATTTTTTC+TGG + chr1_1:55880423-55880442 Msa0030000:intron 35.0%
!! TTTGGCTTAGTTTGTTGTGT+TGG + chr1_1:55880461-55880480 Msa0030000:intron 35.0%
!! TTGGCTTAGTTTGTTGTGTT+GGG + chr1_1:55880462-55880481 Msa0030000:intron 35.0%
ACAGACCATATGATATGTCT+GGG + chr1_1:55880664-55880683 Msa0030000:intron 35.0%
TTCATTGTGTTGGGTGTTAA+GGG - chr1_1:55880710-55880729 None:intergenic 35.0%
TTCAACACCTTCATTGTGTT+GGG - chr1_1:55880719-55880738 None:intergenic 35.0%
CAATGAAGGCAACTCAAATT+AGG + chr1_1:55881041-55881060 Msa0030000:intron 35.0%
! TATATCTTGGTAGTCCTTGT+TGG - chr1_1:55881101-55881120 None:intergenic 35.0%
AAGGACTACCAAGATATAGT+GGG + chr1_1:55881103-55881122 Msa0030000:intron 35.0%
! GCCTCATTTTATTGACAAAC+AGG + chr1_1:55881261-55881280 Msa0030000:intron 35.0%
GCCTGTTTGTCAATAAAATG+AGG - chr1_1:55881265-55881284 None:intergenic 35.0%
AAACAAAGATCAGGAAACCT+AGG - chr1_1:55881412-55881431 None:intergenic 35.0%
! TTTCCTGATCTTTGTTTGTC+TGG + chr1_1:55881415-55881434 Msa0030000:intron 35.0%
ATAGAGAAAGTAAAGGAGGA+AGG + chr1_1:55881458-55881477 Msa0030000:CDS 35.0%
TACAGATGATGATAACTCTG+AGG + chr1_1:55881520-55881539 Msa0030000:CDS 35.0%
TGCTATTAATTTCCAACCTG+AGG + chr1_1:55881746-55881765 Msa0030000:CDS 35.0%
AATTTGCCTCACAAAGTTGA+AGG + chr1_1:55881769-55881788 Msa0030000:CDS 35.0%
!! CTCTAGGATTGAATAAGTCA+AGG + chr1_1:55882020-55882039 Msa0030000:three_prime_UTR 35.0%
CTAGGATTGAATAAGTCAAG+GGG + chr1_1:55882022-55882041 Msa0030000:three_prime_UTR 35.0%
CCAAAGCTTGATACTAGTAG+TGG - chr1_1:55875825-55875844 None:intergenic 40.0%
CCACTACTAGTATCAAGCTT+TGG + chr1_1:55875822-55875841 Msa0030000:five_prime_UTR 40.0%
TGGTTGTTCTTACTCTGTTC+TGG - chr1_1:55875860-55875879 None:intergenic 40.0%
AAGTGTGAAATGGGTGAAGT+TGG - chr1_1:55875999-55876018 None:intergenic 40.0%
CGGAGAGAATGATGAAAGTT+AGG - chr1_1:55876024-55876043 None:intergenic 40.0%
! AGAGTTTCTGCACTGATACA+TGG + chr1_1:55876154-55876173 Msa0030000:CDS 40.0%
CTGATACATGGTTAAAACGC+TGG + chr1_1:55876166-55876185 Msa0030000:CDS 40.0%
! TAATTTAAAACCCCGCATGG+CGG - chr1_1:55876213-55876232 None:intergenic 40.0%
AGTGATAGAAAAAGGGTCAG+TGG + chr1_1:55876383-55876402 Msa0030000:CDS 40.0%
GGAATGTTGCCTAATACAAG+AGG + chr1_1:55876429-55876448 Msa0030000:CDS 40.0%
ATGTTGCCTAATACAAGAGG+TGG + chr1_1:55876432-55876451 Msa0030000:CDS 40.0%
TGTTGCCTAATACAAGAGGT+GGG + chr1_1:55876433-55876452 Msa0030000:CDS 40.0%
GAAAACCCACCTCTTGTATT+AGG - chr1_1:55876441-55876460 None:intergenic 40.0%
CCATAACTTCCAATCCCAAA+TGG - chr1_1:55876474-55876493 None:intergenic 40.0%
! CCATTTGGGATTGGAAGTTA+TGG + chr1_1:55876471-55876490 Msa0030000:CDS 40.0%
TCAACTTCTTCATCCACTAC+TGG - chr1_1:55876537-55876556 None:intergenic 40.0%
TGGATGAAGAAGTTGAAGAG+AGG + chr1_1:55876541-55876560 Msa0030000:CDS 40.0%
GAAGAGTAAGACTTCTATGG+CGG + chr1_1:55876578-55876597 Msa0030000:CDS 40.0%
!! GGAAGACTTCTGAGATTGTT+AGG + chr1_1:55876724-55876743 Msa0030000:CDS 40.0%
ATGCTGCACTTAACATGAAG+AGG + chr1_1:55876763-55876782 Msa0030000:CDS 40.0%
GAAGAGGATGCATGAGATAT+TGG + chr1_1:55876779-55876798 Msa0030000:CDS 40.0%
TGCATGAGATATTGGAGGTT+TGG + chr1_1:55876787-55876806 Msa0030000:intron 40.0%
GAAAAACCAGTGCAACTTAG+GGG + chr1_1:55876863-55876882 Msa0030000:intron 40.0%
AGAGACAGACATTTCTCAAG+AGG + chr1_1:55877149-55877168 Msa0030000:intron 40.0%
GAGACAGACATTTCTCAAGA+GGG + chr1_1:55877150-55877169 Msa0030000:intron 40.0%
TACGCATCACTACATTGGAT+TGG - chr1_1:55877226-55877245 None:intergenic 40.0%
! GCCACAGTTATTGATAGTCA+AGG - chr1_1:55877335-55877354 None:intergenic 40.0%
TCAGAAAAAAACTGGTGGTC+TGG + chr1_1:55877381-55877400 Msa0030000:intron 40.0%
AACTCTGTTTCCTTGTACAG+AGG + chr1_1:55877421-55877440 Msa0030000:CDS 40.0%
GACAAGTTATTGGATGGTCT+AGG + chr1_1:55877664-55877683 Msa0030000:CDS 40.0%
TTCTCTACGAAGGATTGCTA+GGG + chr1_1:55877828-55877847 Msa0030000:CDS 40.0%
CAACCTAATGCAAAATGTGG+AGG - chr1_1:55877859-55877878 None:intergenic 40.0%
! CTCCACATTTTGCATTAGGT+TGG + chr1_1:55877857-55877876 Msa0030000:intron 40.0%
GACCAACCTAATGCAAAATG+TGG - chr1_1:55877862-55877881 None:intergenic 40.0%
GGTGATTTATCATGTTCTCC+CGG + chr1_1:55878086-55878105 Msa0030000:intron 40.0%
CTTTAGTGAATGGCATACCA+AGG - chr1_1:55878184-55878203 None:intergenic 40.0%
!! GACTTCTTGGTCTTTTATCG+AGG + chr1_1:55878669-55878688 Msa0030000:CDS 40.0%
TTTGGATGCAGATGCAAAGT+GGG + chr1_1:55878860-55878879 Msa0030000:CDS 40.0%
ATTTACGTGATTGTGATCCC+TGG + chr1_1:55879227-55879246 Msa0030000:intron 40.0%
ACCAGGCTGAAAGAAAGATA+AGG + chr1_1:55879260-55879279 Msa0030000:intron 40.0%
TCCTTATCTTTCTTTCAGCC+TGG - chr1_1:55879264-55879283 None:intergenic 40.0%
TGTTTCGCAAGTTAGGATTG+CGG + chr1_1:55879377-55879396 Msa0030000:CDS 40.0%
TGTGGTGAAGTGAATCAAAG+TGG - chr1_1:55879466-55879485 None:intergenic 40.0%
ATTCACTTCACCACATGCTA+AGG + chr1_1:55879471-55879490 Msa0030000:intron 40.0%
TTCACTTCACCACATGCTAA+GGG + chr1_1:55879472-55879491 Msa0030000:intron 40.0%
CAATTATCTTGACCAGTTCC+CGG - chr1_1:55879669-55879688 None:intergenic 40.0%
TCTTCGGTCTCATCATTGAA+GGG - chr1_1:55879828-55879847 None:intergenic 40.0%
TTCTTCGGTCTCATCATTGA+AGG - chr1_1:55879829-55879848 None:intergenic 40.0%
CTTGACAAAGAGAAAGGCTT+TGG + chr1_1:55879852-55879871 Msa0030000:CDS 40.0%
AGGAATATTGTGCTGGAACT+AGG + chr1_1:55880093-55880112 Msa0030000:intron 40.0%
AAGGAACAATACAGAAGGAG+GGG - chr1_1:55880324-55880343 None:intergenic 40.0%
CACAGACCATATGATATGTC+TGG + chr1_1:55880663-55880682 Msa0030000:intron 40.0%
CATTGCCCAGACATATCATA+TGG - chr1_1:55880672-55880691 None:intergenic 40.0%
TCATTGTGTTGGGTGTTAAG+GGG - chr1_1:55880709-55880728 None:intergenic 40.0%
CTTCATTGTGTTGGGTGTTA+AGG - chr1_1:55880711-55880730 None:intergenic 40.0%
CTTAACACCCAACACAATGA+AGG + chr1_1:55880709-55880728 Msa0030000:intron 40.0%
CTTCAACACCTTCATTGTGT+TGG - chr1_1:55880720-55880739 None:intergenic 40.0%
!! CAACACAATGAAGGTGTTGA+AGG + chr1_1:55880718-55880737 Msa0030000:intron 40.0%
CAACCCAAATGCCACAATTA+GGG + chr1_1:55880753-55880772 Msa0030000:intron 40.0%
AACCCAAATGCCACAATTAG+GGG + chr1_1:55880754-55880773 Msa0030000:intron 40.0%
TCTGTCCTAGATCTGTTGTT+GGG - chr1_1:55880870-55880889 None:intergenic 40.0%
ATCTGTCCTAGATCTGTTGT+TGG - chr1_1:55880871-55880890 None:intergenic 40.0%
CAGATTCGTAAGGTTGAGTT+AGG - chr1_1:55880913-55880932 None:intergenic 40.0%
CTAACTCAACCTTACGAATC+TGG + chr1_1:55880911-55880930 Msa0030000:intron 40.0%
ATAAACACTACACGTGGTCT+AGG + chr1_1:55880962-55880981 Msa0030000:intron 40.0%
CTTCGTTGTGTTGGGTTTAA+GGG - chr1_1:55881008-55881027 None:intergenic 40.0%
CAACTCAAATTAGGCAGCTA+GGG + chr1_1:55881050-55881069 Msa0030000:intron 40.0%
AACTCAAATTAGGCAGCTAG+GGG + chr1_1:55881051-55881070 Msa0030000:intron 40.0%
CAAGGACTACCAAGATATAG+TGG + chr1_1:55881102-55881121 Msa0030000:intron 40.0%
! TTGTCTGGACCAATTTTCAC+AGG + chr1_1:55881430-55881449 Msa0030000:intron 40.0%
TATCTTATACATGTAGGCGG+AGG + chr1_1:55881653-55881672 Msa0030000:intron 40.0%
ATGCCTATGTGAATCGTCAA+TGG + chr1_1:55881820-55881839 Msa0030000:three_prime_UTR 40.0%
GGTCTGTTAACATATGCTTG+AGG + chr1_1:55882043-55882062 Msa0030000:three_prime_UTR 40.0%
GATAGAAAAAGGGTCAGTGG+AGG + chr1_1:55876386-55876405 Msa0030000:CDS 45.0%
! TTTTCGCCGGAATCACCATT+TGG + chr1_1:55876456-55876475 Msa0030000:CDS 45.0%
TTTCGCCGGAATCACCATTT+GGG + chr1_1:55876457-55876476 Msa0030000:CDS 45.0%
CCAATCCCAAATGGTGATTC+CGG - chr1_1:55876465-55876484 None:intergenic 45.0%
GGGATTGGAAGTTATGGAAG+TGG + chr1_1:55876477-55876496 Msa0030000:CDS 45.0%
GGAAGTTATGGAAGTGGTGA+TGG + chr1_1:55876483-55876502 Msa0030000:CDS 45.0%
!! AGTTATGGAAGTGGTGATGG+TGG + chr1_1:55876486-55876505 Msa0030000:CDS 45.0%
TGGTGAAGTGAGGTTTCCTT+GGG + chr1_1:55876506-55876525 Msa0030000:CDS 45.0%
TTGAAGAGAGGACGAATTCG+CGG + chr1_1:55876553-55876572 Msa0030000:CDS 45.0%
CTCTTCCTGAGTCTGAATTG+AGG + chr1_1:55876607-55876626 Msa0030000:CDS 45.0%
TTCCTGAGTCTGAATTGAGG+AGG + chr1_1:55876610-55876629 Msa0030000:CDS 45.0%
AACCTCCTCAATTCAGACTC+AGG - chr1_1:55876615-55876634 None:intergenic 45.0%
AAGCATAAGACGAGAATCGG+TGG + chr1_1:55876657-55876676 Msa0030000:CDS 45.0%
GAGGATGCATGAGATATTGG+AGG + chr1_1:55876782-55876801 Msa0030000:CDS 45.0%
GGTTCAGGCGTATGTTTGTA+AGG + chr1_1:55877083-55877102 Msa0030000:intron 45.0%
AAACTGGTGGTCTGGTGATT+TGG + chr1_1:55877389-55877408 Msa0030000:CDS 45.0%
CCAGGCCAATCTGTATATCT+AGG - chr1_1:55877691-55877710 None:intergenic 45.0%
! CCTAGATATACAGATTGGCC+TGG + chr1_1:55877688-55877707 Msa0030000:CDS 45.0%
! AAAGGAAGAACTCTGAAGGG+AGG - chr1_1:55877772-55877791 None:intergenic 45.0%
CCGAAAGGAAGAACTCTGAA+GGG - chr1_1:55877775-55877794 None:intergenic 45.0%
CCCTTCAGAGTTCTTCCTTT+CGG + chr1_1:55877772-55877791 Msa0030000:CDS 45.0%
TCCGAAAGGAAGAACTCTGA+AGG - chr1_1:55877776-55877795 None:intergenic 45.0%
CTTCTCTACGAAGGATTGCT+AGG + chr1_1:55877827-55877846 Msa0030000:CDS 45.0%
TCTCTACGAAGGATTGCTAG+GGG + chr1_1:55877829-55877848 Msa0030000:CDS 45.0%
! CTCCCTCCACATTTTGCATT+AGG + chr1_1:55877853-55877872 Msa0030000:CDS 45.0%
GGTAGAAACAAGCAGCTTCA+AGG + chr1_1:55877955-55877974 Msa0030000:intron 45.0%
TGCAGCCATGATCAAACTGT+GGG + chr1_1:55877984-55878003 Msa0030000:CDS 45.0%
GCTAACTACCAGTGAGAGAA+TGG + chr1_1:55878050-55878069 Msa0030000:CDS 45.0%
GAGAATGGCAGAAGAGATCA+AGG + chr1_1:55878065-55878084 Msa0030000:CDS 45.0%
CTTCACTGTTCATGCATCCT+TGG + chr1_1:55878164-55878183 Msa0030000:intron 45.0%
TGTAAGTGCCCTAGCACTTA+TGG - chr1_1:55878331-55878350 None:intergenic 45.0%
!! TGCAATTAGCTTGGTGCTGA+TGG + chr1_1:55878463-55878482 Msa0030000:intron 45.0%
CTGTACTACACCACTATGTG+AGG + chr1_1:55878572-55878591 Msa0030000:intron 45.0%
CATTCTTTCCCTCTCTAGCA+AGG - chr1_1:55878727-55878746 None:intergenic 45.0%
CTTGCTAGAGAGGGAAAGAA+TGG + chr1_1:55878725-55878744 Msa0030000:CDS 45.0%
AAGAATGGCCAAAGCAATGC+AGG + chr1_1:55878740-55878759 Msa0030000:CDS 45.0%
CTTTGGATGCAGATGCAAAG+TGG + chr1_1:55878859-55878878 Msa0030000:CDS 45.0%
TTGGATGCAGATGCAAAGTG+GGG + chr1_1:55878861-55878880 Msa0030000:CDS 45.0%
TGCAAAGTGGGGAAAGACAT+TGG + chr1_1:55878872-55878891 Msa0030000:CDS 45.0%
! CACAATGTTAGTGGTATCGG+AGG + chr1_1:55879138-55879157 Msa0030000:intron 45.0%
! TCCCTGGATTTTTGCTTACC+AGG + chr1_1:55879243-55879262 Msa0030000:intron 45.0%
GCCTGGTAAGCAAAAATCCA+GGG - chr1_1:55879247-55879266 None:intergenic 45.0%
AGCCTGGTAAGCAAAAATCC+AGG - chr1_1:55879248-55879267 None:intergenic 45.0%
AGCTGAAAGAGCCCTAATGA+AGG + chr1_1:55879285-55879304 Msa0030000:CDS 45.0%
TGAAAGAGCCCTAATGAAGG+TGG + chr1_1:55879288-55879307 Msa0030000:CDS 45.0%
AGACACCTCCACCTTCATTA+GGG - chr1_1:55879299-55879318 None:intergenic 45.0%
AAGACACCTCCACCTTCATT+AGG - chr1_1:55879300-55879319 None:intergenic 45.0%
TTCATCACACCCTTAGCATG+TGG - chr1_1:55879484-55879503 None:intergenic 45.0%
!! ATGCGAGGGTACTTTAGTTG+TGG + chr1_1:55879558-55879577 Msa0030000:intron 45.0%
! GGTAGACGTGGAGTTTTTGA+CGG + chr1_1:55879610-55879629 Msa0030000:intron 45.0%
TCGAAAACATGCACTTGCAC+TGG + chr1_1:55879638-55879657 Msa0030000:CDS 45.0%
AATCGAGCTTCAACGACATG+AGG + chr1_1:55879882-55879901 Msa0030000:CDS 45.0%
TGCTGGAACTAGGAATTGCA+AGG + chr1_1:55880103-55880122 Msa0030000:intron 45.0%
! CTACCAAGTCTTTGAGAGCT+TGG + chr1_1:55880134-55880153 Msa0030000:intron 45.0%
GAACCAAGCTCTCAAAGACT+TGG - chr1_1:55880140-55880159 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTCTA+AGG - chr1_1:55880614-55880633 None:intergenic 45.0%
!! CCTTAGAAAACCGGCTTGTA+AGG + chr1_1:55880611-55880630 Msa0030000:intron 45.0%
!! AAAACCGGCTTGTAAGGTGA+GGG + chr1_1:55880617-55880636 Msa0030000:intron 45.0%
! GGTGTTGAAGGTTGCAATGA+TGG + chr1_1:55880730-55880749 Msa0030000:intron 45.0%
GCAACCCAAATGCCACAATT+AGG + chr1_1:55880752-55880771 Msa0030000:intron 45.0%
ACCCAAATGCCACAATTAGG+GGG + chr1_1:55880755-55880774 Msa0030000:intron 45.0%
TCATTGGGTCCTAAGTGTGA+GGG - chr1_1:55880821-55880840 None:intergenic 45.0%
ACAAGCCCAACAACAGATCT+AGG + chr1_1:55880862-55880881 Msa0030000:intron 45.0%
CCTTACAAGCCAGATTCGTA+AGG - chr1_1:55880923-55880942 None:intergenic 45.0%
! CCTTACGAATCTGGCTTGTA+AGG + chr1_1:55880920-55880939 Msa0030000:intron 45.0%
! GAATCTGGCTTGTAAGGTGA+GGG + chr1_1:55880926-55880945 Msa0030000:intron 45.0%
GTTGTGTTGGGTTTAAGGGA+TGG - chr1_1:55881004-55881023 None:intergenic 45.0%
CCTTCGTTGTGTTGGGTTTA+AGG - chr1_1:55881009-55881028 None:intergenic 45.0%
CCTTAAACCCAACACAACGA+AGG + chr1_1:55881006-55881025 Msa0030000:intron 45.0%
TCCAACACCTTCGTTGTGTT+GGG - chr1_1:55881016-55881035 None:intergenic 45.0%
GCAACTCAAATTAGGCAGCT+AGG + chr1_1:55881049-55881068 Msa0030000:intron 45.0%
TGGAAATTCCGCCTTCATTG+CGG - chr1_1:55881081-55881100 None:intergenic 45.0%
TGAAGGCGGAATTTCCAACA+AGG + chr1_1:55881084-55881103 Msa0030000:intron 45.0%
GGTCCAGACAAACAAAGATC+AGG - chr1_1:55881421-55881440 None:intergenic 45.0%
CTTTGTGAGGCAAATTCCTC+AGG - chr1_1:55881765-55881784 None:intergenic 45.0%
ACCTGACCTTCAACTTTGTG+AGG - chr1_1:55881778-55881797 None:intergenic 45.0%
TGACGATTCACATAGGCATC+AGG - chr1_1:55881819-55881838 None:intergenic 45.0%
CTGCCATTGACGATTCACAT+AGG - chr1_1:55881826-55881845 None:intergenic 45.0%
TGGCAGTGACACTCAATTCA+TGG + chr1_1:55881840-55881859 Msa0030000:three_prime_UTR 45.0%
GGCAGTGACACTCAATTCAT+GGG + chr1_1:55881841-55881860 Msa0030000:three_prime_UTR 45.0%
AATGGGTGAAGTTGGCGAGT+GGG - chr1_1:55875991-55876010 None:intergenic 50.0%
AAATGGGTGAAGTTGGCGAG+TGG - chr1_1:55875992-55876011 None:intergenic 50.0%
AATCGATCGAAACCGCCATG+CGG + chr1_1:55876198-55876217 Msa0030000:CDS 50.0%
! AGCTCTGATGATGAGGGTGA+TGG + chr1_1:55876276-55876295 Msa0030000:CDS 50.0%
! TCTGATGATGAGGGTGATGG+TGG + chr1_1:55876279-55876298 Msa0030000:CDS 50.0%
!! GGGTGATGGTGGTAGTAGAA+TGG + chr1_1:55876290-55876309 Msa0030000:CDS 50.0%
!! TACAAGAGGTGGGTTTTCGC+CGG + chr1_1:55876443-55876462 Msa0030000:CDS 50.0%
! CCGGAATCACCATTTGGGAT+TGG + chr1_1:55876462-55876481 Msa0030000:CDS 50.0%
GTGGTGAAGTGAGGTTTCCT+TGG + chr1_1:55876505-55876524 Msa0030000:CDS 50.0%
TCCTTGGGAGAAACCAGTAG+TGG + chr1_1:55876521-55876540 Msa0030000:CDS 50.0%
!! TCCACTACTGGTTTCTCCCA+AGG - chr1_1:55876525-55876544 None:intergenic 50.0%
CATAAGACGAGAATCGGTGG+TGG + chr1_1:55876660-55876679 Msa0030000:CDS 50.0%
ACGAATCCCCTAAGTTGCAC+TGG - chr1_1:55876872-55876891 None:intergenic 50.0%
GTAGCTCACACCTCTGTACA+AGG - chr1_1:55877434-55877453 None:intergenic 50.0%
! GTACAGAGGTGTGAGCTACA+AGG + chr1_1:55877435-55877454 Msa0030000:CDS 50.0%
!! GGTGCTGACAGAAACTTCGA+AGG - chr1_1:55877508-55877527 None:intergenic 50.0%
ATGCTTCCTCCAACTGTTCC+TGG + chr1_1:55877739-55877758 Msa0030000:CDS 50.0%
TGGTAACCAGGAACAGTTGG+AGG - chr1_1:55877748-55877767 None:intergenic 50.0%
!! GGTTGGTAACCAGGAACAGT+TGG - chr1_1:55877751-55877770 None:intergenic 50.0%
! GAAGAACTCTGAAGGGAGGT+TGG - chr1_1:55877768-55877787 None:intergenic 50.0%
GAGACCGACACTTGGTTTCA+AGG + chr1_1:55877798-55877817 Msa0030000:CDS 50.0%
ACCGACACTTGGTTTCAAGG+AGG + chr1_1:55877801-55877820 Msa0030000:CDS 50.0%
GCCTCCTTGAAACCAAGTGT+CGG - chr1_1:55877805-55877824 None:intergenic 50.0%
AGGAGGCAACTTCTCTACGA+AGG + chr1_1:55877818-55877837 Msa0030000:CDS 50.0%
CTGCAGCCATGATCAAACTG+TGG + chr1_1:55877983-55878002 Msa0030000:CDS 50.0%
GCGAAAGTTGCACTCAAACG+TGG + chr1_1:55878021-55878040 Msa0030000:CDS 50.0%
CTCTTCTGCCATTCTCTCAC+TGG - chr1_1:55878061-55878080 None:intergenic 50.0%
TTCCGGATGCAGAAACTGAC+AGG + chr1_1:55878621-55878640 Msa0030000:intron 50.0%
CACCTGTCAGTTTCTGCATC+CGG - chr1_1:55878626-55878645 None:intergenic 50.0%
AGCAAGGCTTGAGTGACATC+TGG - chr1_1:55878711-55878730 None:intergenic 50.0%
TCACTCAAGCCTTGCTAGAG+AGG + chr1_1:55878715-55878734 Msa0030000:CDS 50.0%
CACTCAAGCCTTGCTAGAGA+GGG + chr1_1:55878716-55878735 Msa0030000:CDS 50.0%
CTCCTCATCCTGCATTGCTT+TGG - chr1_1:55878751-55878770 None:intergenic 50.0%
CAAAGCAATGCAGGATGAGG+AGG + chr1_1:55878749-55878768 Msa0030000:CDS 50.0%
TACATCAGAGTTGTCAGCGG+AGG + chr1_1:55878818-55878837 Msa0030000:CDS 50.0%
TGGGACTCTTGGCGAAACTT+TGG + chr1_1:55878842-55878861 Msa0030000:CDS 50.0%
AAGAGCCCTAATGAAGGTGG+AGG + chr1_1:55879291-55879310 Msa0030000:CDS 50.0%
TTCATGGTTGCAGGTAGACG+TGG + chr1_1:55879598-55879617 Msa0030000:intron 50.0%
! TGCACTTGCACTGGAAGTAC+CGG + chr1_1:55879647-55879666 Msa0030000:CDS 50.0%
CTAGCACTTGAAGCTGAGAG+TGG + chr1_1:55879727-55879746 Msa0030000:CDS 50.0%
!! AGGCAGAGTGGGTTATCAAG+TGG - chr1_1:55880179-55880198 None:intergenic 50.0%
TAGGAAAGCGAAGGCAGAGT+GGG - chr1_1:55880190-55880209 None:intergenic 50.0%
ATAGGAAAGCGAAGGCAGAG+TGG - chr1_1:55880191-55880210 None:intergenic 50.0%
!! GAAAACCGGCTTGTAAGGTG+AGG + chr1_1:55880616-55880635 Msa0030000:intron 50.0%
TTGTGTTGGGTGTTAAGGGG+TGG - chr1_1:55880706-55880725 None:intergenic 50.0%
GCCCCCTAATTGTGGCATTT+GGG - chr1_1:55880759-55880778 None:intergenic 50.0%
AGCCCCCTAATTGTGGCATT+TGG - chr1_1:55880760-55880779 None:intergenic 50.0%
ATGCCACAATTAGGGGGCTA+CGG + chr1_1:55880761-55880780 Msa0030000:intron 50.0%
!! GCTACGGCGGATTGCAATAA+AGG + chr1_1:55880777-55880796 Msa0030000:intron 50.0%
ATTGGGTCCTAAGTGTGAGG+GGG - chr1_1:55880819-55880838 None:intergenic 50.0%
CATTGGGTCCTAAGTGTGAG+GGG - chr1_1:55880820-55880839 None:intergenic 50.0%
CTCATTGGGTCCTAAGTGTG+AGG - chr1_1:55880822-55880841 None:intergenic 50.0%
GTCCATGCGTCAAGCTCATT+GGG - chr1_1:55880836-55880855 None:intergenic 50.0%
! CGAATCTGGCTTGTAAGGTG+AGG + chr1_1:55880925-55880944 Msa0030000:intron 50.0%
TACACGTGGTCTAGGCAACA+TGG + chr1_1:55880970-55880989 Msa0030000:intron 50.0%
ACACGTGGTCTAGGCAACAT+GGG + chr1_1:55880971-55880990 Msa0030000:intron 50.0%
! ACCCAACACAACGAAGGTGT+TGG + chr1_1:55881012-55881031 Msa0030000:intron 50.0%
CTCCAACACCTTCGTTGTGT+TGG - chr1_1:55881017-55881036 None:intergenic 50.0%
!! CAACACAACGAAGGTGTTGG+AGG + chr1_1:55881015-55881034 Msa0030000:intron 50.0%
! GGTGTTGGAGGTTGCAATGA+AGG + chr1_1:55881027-55881046 Msa0030000:intron 50.0%
TCAAATTAGGCAGCTAGGGG+CGG + chr1_1:55881054-55881073 Msa0030000:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr1_1:55881565-55881584 None:intergenic 50.0%
GTGAGGCAAATTCCTCAGGT+TGG - chr1_1:55881761-55881780 None:intergenic 50.0%
GCCTCACAAAGTTGAAGGTC+AGG + chr1_1:55881774-55881793 Msa0030000:exon 50.0%
!! GGTCAGGTGTCGTGATTTTG+TGG + chr1_1:55881790-55881809 Msa0030000:three_prime_UTR 50.0%
ATCGATCGAAACCGCCATGC+GGG + chr1_1:55876199-55876218 Msa0030000:CDS 55.0%
!! GTGGTGATGGTGGTGAAGTG+AGG + chr1_1:55876496-55876515 Msa0030000:CDS 55.0%
! AAGACGAGAATCGGTGGTGG+TGG + chr1_1:55876663-55876682 Msa0030000:CDS 55.0%
! CTGGTGGTCTGGTGATTTGG+AGG + chr1_1:55877392-55877411 Msa0030000:CDS 55.0%
! GGTCTGGTGATTTGGAGGTC+TGG + chr1_1:55877397-55877416 Msa0030000:CDS 55.0%
! ATATCCGCATCGACAGGCAG+TGG - chr1_1:55877721-55877740 None:intergenic 55.0%
! GGAAGCATATCCGCATCGAC+AGG - chr1_1:55877727-55877746 None:intergenic 55.0%
!! CTGAAGGGAGGTTGGTAACC+AGG - chr1_1:55877760-55877779 None:intergenic 55.0%
!! AGTGTCGGTCTCACTCCGAA+AGG - chr1_1:55877790-55877809 None:intergenic 55.0%
TTCGGAGTGAGACCGACACT+TGG + chr1_1:55877790-55877809 Msa0030000:CDS 55.0%
CGGATGCAGAAACTGACAGG+TGG + chr1_1:55878624-55878643 Msa0030000:intron 55.0%
GGCCAAAGCAATGCAGGATG+AGG + chr1_1:55878746-55878765 Msa0030000:CDS 55.0%
GGGTCTGCTCTGCTTTCTGA+TGG - chr1_1:55879328-55879347 None:intergenic 55.0%
!! GCACTTGCACTGGAAGTACC+GGG + chr1_1:55879648-55879667 Msa0030000:CDS 55.0%
GCACTTGAAGCTGAGAGTGG+TGG + chr1_1:55879730-55879749 Msa0030000:CDS 55.0%
! AGCTGAGAGTGGTGGTGTTC+TGG + chr1_1:55879738-55879757 Msa0030000:CDS 55.0%
! GTCTCATCATTGAAGGGCGC+TGG - chr1_1:55879822-55879841 None:intergenic 55.0%
! CTAAGTGTGAGGGGGTGTGT+TGG - chr1_1:55880811-55880830 None:intergenic 55.0%
CAACACACCCCCTCACACTT+AGG + chr1_1:55880809-55880828 Msa0030000:intron 55.0%
GACCCAATGAGCTTGACGCA+TGG + chr1_1:55880831-55880850 Msa0030000:intron 55.0%
CGTCCATGCGTCAAGCTCAT+TGG - chr1_1:55880837-55880856 None:intergenic 55.0%
CATGTAGGCGGAGGATGATG+AGG + chr1_1:55881662-55881681 Msa0030000:intron 55.0%
TCGATCGAAACCGCCATGCG+GGG + chr1_1:55876200-55876219 Msa0030000:CDS 60.0%
ACAGGCAGTGGCTCACATCC+AGG - chr1_1:55877709-55877728 None:intergenic 60.0%
TGAGCCACTGCCTGTCGATG+CGG + chr1_1:55877714-55877733 Msa0030000:CDS 60.0%
TCAGAGTTGTCAGCGGAGGC+TGG + chr1_1:55878822-55878841 Msa0030000:CDS 60.0%
CAGAGTTGTCAGCGGAGGCT+GGG + chr1_1:55878823-55878842 Msa0030000:CDS 60.0%
!! GCACTGGAAGTACCGGGAAC+TGG + chr1_1:55879654-55879673 Msa0030000:CDS 60.0%
!! GGCGCTGGTAATCCTTTCCC+CGG - chr1_1:55879807-55879826 None:intergenic 60.0%
GCAGCCCTCACCTTACAAGC+CGG - chr1_1:55880624-55880643 None:intergenic 60.0%
CCACAATTAGGGGGCTACGG+CGG + chr1_1:55880764-55880783 Msa0030000:intron 60.0%
TCAGCGGAGGCTGGGACTCT+TGG + chr1_1:55878831-55878850 Msa0030000:CDS 65.0%
CCGCCGTAGCCCCCTAATTG+TGG - chr1_1:55880767-55880786 None:intergenic 65.0%
CTAGGGGCGGACCGCAATGA+AGG + chr1_1:55881067-55881086 Msa0030000:intron 65.0%
GGGGCGGACCGCAATGAAGG+CGG + chr1_1:55881070-55881089 Msa0030000:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 55875803 55882160 55875803 ID=Msa0030000;Name=Msa0030000
chr1_1 mRNA 55875803 55882160 55875803 ID=Msa0030000-mRNA-1;Parent=Msa0030000;Name=Msa0030000-mRNA-1;_AED=0.05;_eAED=0.05;_QI=173|1|1|1|1|1|9|372|839
chr1_1 exon 55875803 55876803 55875803 ID=Msa0030000-mRNA-1:exon:16644;Parent=Msa0030000-mRNA-1
chr1_1 exon 55877385 55877874 55877385 ID=Msa0030000-mRNA-1:exon:16645;Parent=Msa0030000-mRNA-1
chr1_1 exon 55877956 55878086 55877956 ID=Msa0030000-mRNA-1:exon:16646;Parent=Msa0030000-mRNA-1
chr1_1 exon 55878633 55878983 55878633 ID=Msa0030000-mRNA-1:exon:16647;Parent=Msa0030000-mRNA-1
chr1_1 exon 55879265 55879421 55879265 ID=Msa0030000-mRNA-1:exon:16648;Parent=Msa0030000-mRNA-1
chr1_1 exon 55879611 55879903 55879611 ID=Msa0030000-mRNA-1:exon:16649;Parent=Msa0030000-mRNA-1
chr1_1 exon 55881283 55881342 55881283 ID=Msa0030000-mRNA-1:exon:16650;Parent=Msa0030000-mRNA-1
chr1_1 exon 55881452 55881541 55881452 ID=Msa0030000-mRNA-1:exon:16651;Parent=Msa0030000-mRNA-1
chr1_1 exon 55881669 55882160 55881669 ID=Msa0030000-mRNA-1:exon:16652;Parent=Msa0030000-mRNA-1
chr1_1 five_prime_UTR 55875803 55875975 55875803 ID=Msa0030000-mRNA-1:five_prime_utr;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55875976 55876803 55875976 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55877385 55877874 55877385 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55877956 55878086 55877956 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55878633 55878983 55878633 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55879265 55879421 55879265 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55879611 55879903 55879611 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55881283 55881342 55881283 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55881452 55881541 55881452 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 CDS 55881669 55881788 55881669 ID=Msa0030000-mRNA-1:cds;Parent=Msa0030000-mRNA-1
chr1_1 three_prime_UTR 55881789 55882160 55881789 ID=Msa0030000-mRNA-1:three_prime_utr;Parent=Msa0030000-mRNA-1
Gene Sequence

>Msa0030000

ATGGCTCTTCTTCCCACTCGCCAACTTCACCCATTTCACACTTCTCCTAACTTTCATCATTCTCTCCGTTTCTTCACCACAATTTCTTCTTCTTCTTCAATCCATAAAAGCTTCACTTTCAAAACACCCACAAAAAATTTCACTTATCTTTCTTCAAAAAATCCCATTTTTTACCATAAGAGTTTCTGCACTGATACATGGTTAAAACGCTGGAATGAACACAATCGATCGAAACCGCCATGCGGGGTTTTAAATTATCAAGGTTCTGGAAATGGGCATTCATCAAAATCTGATTTTGATAGCTCTGATGATGAGGGTGATGGTGGTAGTAGAATGGATAGAATTGTTGAGAAATTGAAGAAATTTGGGTATGAAAGTGATGAAAATGAGAATATAAAAGAAGAAGGAGTGATAGAAAAAGGGTCAGTGGAGGATATATTTTATGTAGAAGAAGGAATGTTGCCTAATACAAGAGGTGGGTTTTCGCCGGAATCACCATTTGGGATTGGAAGTTATGGAAGTGGTGATGGTGGTGAAGTGAGGTTTCCTTGGGAGAAACCAGTAGTGGATGAAGAAGTTGAAGAGAGGACGAATTCGCGGAAGAAGAGTAAGACTTCTATGGCGGAATTGACTCTTCCTGAGTCTGAATTGAGGAGGTTGCTGAAGTTAACTTTTATGAAGAAGCATAAGACGAGAATCGGTGGTGGTGGTGTTACTCAAGCTGTTGTTGATAAGATTCATGAGAGGTGGAAGACTTCTGAGATTGTTAGGCTTAAGTTTGAAGGTGATGCTGCACTTAACATGAAGAGGATGCATGAGATATTGGAGAAAAAAACTGGTGGTCTGGTGATTTGGAGGTCTGGCAACTCTGTTTCCTTGTACAGAGGTGTGAGCTACAAGGATCCTTCAATACAACAGAATAAACAGTTATATAGGAAAAACGAGAAACCTTCGAAGTTTCTGTCAGCACCTTCGAATGATTTTGAAGTGAAGCCTTCTGAATTTACTTCTGATTCTGAGACAAAAACATCGTTGGAAAAATTGGAATCTACAAATGATCAGAAAGAAAAAGTTAATCTGCCAAAACTCAGTTATGAAGATGAAGTAGACAAGTTATTGGATGGTCTAGGTCCTAGATATACAGATTGGCCTGGATGTGAGCCACTGCCTGTCGATGCGGATATGCTTCCTCCAACTGTTCCTGGTTACCAACCTCCCTTCAGAGTTCTTCCTTTCGGAGTGAGACCGACACTTGGTTTCAAGGAGGCAACTTCTCTACGAAGGATTGCTAGGGGACTCCCTCCACATTTTGCATTAGGTAGAAACAAGCAGCTTCAAGGTTTAGCTGCAGCCATGATCAAACTGTGGGAAAAAAGTTCTATAGCGAAAGTTGCACTCAAACGTGGTGTGCAGCTAACTACCAGTGAGAGAATGGCAGAAGAGATCAAGAAACTGACAGGTGGCATAATGCTCTCCAGAAATAAAGACTTCTTGGTCTTTTATCGAGGGAAGAATTTTTTATCACCAGATGTCACTCAAGCCTTGCTAGAGAGGGAAAGAATGGCCAAAGCAATGCAGGATGAGGAGGAGCATGCAAGATTGAGAGCGTCATCATTGATCTTACCAGCTATTAATACATCAGAGTTGTCAGCGGAGGCTGGGACTCTTGGCGAAACTTTGGATGCAGATGCAAAGTGGGGAAAGACATTGGATGAGCGTCACGAGCAAAAAGTTATGAGAGAAGTAGAACAACTACGGCATGCCAACATCGTTAGAAAGTTAGAAGAGAAGCTTTCACTTGCTGAAAGAAAGATAAGGAGAGCTGAAAGAGCCCTAATGAAGGTGGAGGTGTCTTTGAAGCCATCAGAAAGCAGAGCAGACCCTGAAAGTATAACCGATGAAGAGAGATTTATGTTTCGCAAGTTAGGATTGCGGATGAAAGCTTTCTTACTTCTTGGTAGACGTGGAGTTTTTGACGGTACTATCGAAAACATGCACTTGCACTGGAAGTACCGGGAACTGGTCAAGATAATTGTTAAGGCTAACAACTTTGAACATGTAAAAAAAATTGCACTAGCACTTGAAGCTGAGAGTGGTGGTGTTCTGGTTTCAGTTGACAAAGTTTCAAAAGGATATTCTATACTTGTTTACCGGGGAAAGGATTACCAGCGCCCTTCAATGATGAGACCGAAGAATCTCTTGACAAAGAGAAAGGCTTTGGCACGTTCAATCGAGCTTCAACGACATGAGGCACTTTCAAGTCATATTTCAACTTTGCAAAGTAAAGTGGAGAAGTTAAGATCCGAAATAGAACAAATAGAGAAAGTAAAGGAGGAAGGAGATGAAGCATTGTATAACAGATTAGATTCGGCTTATTCTACAGATGATGATAACTCTGAGGCGGAGGATGATGAGGAAGAAGTTGACGCATATCTTCAGAGTGACAATGATGAAAATGATAGTGAAGTTGAAAGTGATGCTATTAATTTCCAACCTGAGGAATTTGCCTCACAAAGTTGA
Protein sequence

>Msa0030000

MALLPTRQLHPFHTSPNFHHSLRFFTTISSSSSIHKSFTFKTPTKNFTYLSSKNPIFYHKSFCTDTWLKRWNEHNRSKPPCGVLNYQGSGNGHSSKSDFDSSDDEGDGGSRMDRIVEKLKKFGYESDENENIKEEGVIEKGSVEDIFYVEEGMLPNTRGGFSPESPFGIGSYGSGDGGEVRFPWEKPVVDEEVEERTNSRKKSKTSMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAVVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDPSIQQNKQLYRKNEKPSKFLSAPSNDFEVKPSEFTSDSETKTSLEKLESTNDQKEKVNLPKLSYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSLRRIARGLPPHFALGRNKQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKLTGGIMLSRNKDFLVFYRGKNFLSPDVTQALLERERMAKAMQDEEEHARLRASSLILPAINTSELSAEAGTLGETLDADAKWGKTLDERHEQKVMREVEQLRHANIVRKLEEKLSLAERKIRRAERALMKVEVSLKPSESRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRPSMMRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEIEQIEKVKEEGDEALYNRLDSAYSTDDDNSEAEDDEEEVDAYLQSDNDENDSEVESDAINFQPEEFASQS*