AlfalfaGEDB | Msa1456810

M. sativa cultivar zhongmu-4 / Msa1456810

KEGG: K00939
GO: GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576
PFAM: PF00406.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456810	XP_003605633.1	76.965	369	20	7	1	367	1	306	0.0	525

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456810	sp\|Q9FIJ7\|KAD2_ARATH	75.635	197	48	0	171	367	87	283	4.30e-106	316

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456810	G7JRB1	76.965	369	20	7	1	367	1	306	0.0	525

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa1456810	0.808473	3.044083e-50	-8.615850e-47
Msa0001460	Msa1456810	0.828923	6.863243e-55	-8.615850e-47
Msa0003470	Msa1456810	0.853678	2.038352e-61	-8.615850e-47
Msa0004350	Msa1456810	0.824889	6.319521e-54	-8.615850e-47
Msa0004610	Msa1456810	0.808263	3.375745e-50	-8.615850e-47
Msa0006700	Msa1456810	0.865431	5.937310e-65	-8.615850e-47
Msa0006820	Msa1456810	0.814449	1.531705e-51	-8.615850e-47
Msa0007230	Msa1456810	0.849013	4.247090e-60	-8.615850e-47
Msa0008330	Msa1456810	0.820122	8.105894e-53	-8.615850e-47
Msa0008350	Msa1456810	0.811162	8.035651e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456810	MtrunA17_Chr4g0017231	76.965	369	20	7	1	367	1	306	0.0	525
Msa1456810	MtrunA17_Chr2g0305051	56.915	188	81	0	167	354	91	278	8.25e-68	224
Msa1456810	MtrunA17_Chr4g0057771	36.979	192	110	4	171	352	52	242	4.89e-35	129
Msa1456810	MtrunA17_Chr1g0181801	29.885	174	101	4	173	328	136	306	2.29e-16	79.3
Msa1456810	MtrunA17_Chr7g0263541	29.310	174	102	4	173	328	61	231	1.26e-15	76.3
Msa1456810	MtrunA17_Chr8g0337051	31.068	103	68	2	171	272	44	144	8.32e-14	69.7
Msa1456810	MtrunA17_Chr4g0018221	24.046	262	133	8	89	347	31	229	4.10e-12	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456810	AT5G47840.1	75.635	197	48	0	171	367	87	283	4.37e-107	316
Msa1456810	AT5G47840.2	70.051	197	45	1	171	367	87	269	4.42e-96	287
Msa1456810	AT5G35170.2	55.208	192	86	0	167	358	98	289	6.69e-69	227
Msa1456810	AT5G35170.1	55.208	192	86	0	167	358	98	289	6.74e-69	227
Msa1456810	AT5G63400.1	34.896	192	114	4	171	352	56	246	1.98e-32	122
Msa1456810	AT5G50370.1	33.333	165	101	3	171	327	57	220	2.30e-28	111
Msa1456810	AT5G50370.2	33.540	161	98	3	171	323	57	216	3.06e-27	107
Msa1456810	AT5G63400.2	38.235	136	79	2	171	302	56	190	5.62e-27	106
Msa1456810	AT2G37250.1	29.885	174	101	4	173	328	76	246	3.81e-18	84.0
Msa1456810	AT2G39270.1	31.395	172	101	3	173	328	89	259	3.46e-17	81.6

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Find 105 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGTGCGAAAGAATATA+TGG	0.409628	tig0037798:-22154	Msa1456810:CDS
AAAGGATATATAATATAATA+TGG	0.304977	tig0037798:-24049	None:intergenic
AAATAATATAGTAAGGAATT+TGG	0.206316	tig0037798:+22342	None:intergenic
AACTTACTTTCTTGGTGATG+AGG	0.524146	tig0037798:+23572	None:intergenic
AACTTTGGACCTGGATCCAA+TGG	0.521885	tig0037798:-22413	Msa1456810:CDS
AAGCCAGATTCTGTAGAGAA+TGG	0.494738	tig0037798:-21987	Msa1456810:CDS
AATAATATAGTAAGGAATTT+GGG	0.333159	tig0037798:+22343	None:intergenic
AATCAACAAAATTAATAAGA+GGG	0.556950	tig0037798:-24016	Msa1456810:five_prime_UTR
AATTCGTAAAATAAACTATG+AGG	0.558111	tig0037798:+18874	None:intergenic
AATTGTTATATCTTTATACA+TGG	0.470672	tig0037798:+20511	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTAAGTGACGAAAAAA+TGG	-	tig0037798:18754-18773	Msa1456810:three_prime_UTR	30.0%
AGAGTAAGTGACGAAAAAAT+GGG	-	tig0037798:18755-18774	Msa1456810:three_prime_UTR	30.0%
TTCTTCATCATCTTCTTTGA+AGG	-	tig0037798:18805-18824	Msa1456810:three_prime_UTR	30.0%
TCTTCATCATCTTCTTTGAA+GGG	-	tig0037798:18806-18825	Msa1456810:three_prime_UTR	30.0%
ACCATAGAAGAATGAGAAAA+GGG	+	tig0037798:18980-18999	None:intergenic	30.0%
TACCATAGAAGAATGAGAAA+AGG	+	tig0037798:18981-19000	None:intergenic	30.0%
TATGATTCAGATTGTGAAAG+CGG	-	tig0037798:19064-19083	Msa1456810:CDS	30.0%
ATTAGCAGCATTAGCATAAT+AGG	-	tig0037798:19474-19493	Msa1456810:intron	30.0%
TCTTAAACCGGAAAATACTT+GGG	+	tig0037798:19575-19594	None:intergenic	30.0%
ATCTTAAACCGGAAAATACT+TGG	+	tig0037798:19576-19595	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0037798	gene	18697	24060	18697	ID=Msa1456810;Name=Msa1456810
tig0037798	mRNA	18697	24060	18697	ID=Msa1456810-mRNA-1;Parent=Msa1456810;Name=Msa1456810-mRNA-1;_AED=0.10;_eAED=0.10;_QI=76\|0.71\|0.87\|0.87\|1\|1\|8\|353\|367
tig0037798	exon	18697	19154	18697	ID=Msa1456810-mRNA-1:exon:20889;Parent=Msa1456810-mRNA-1
tig0037798	exon	20508	20582	20508	ID=Msa1456810-mRNA-1:exon:20888;Parent=Msa1456810-mRNA-1
tig0037798	exon	20750	20896	20750	ID=Msa1456810-mRNA-1:exon:20887;Parent=Msa1456810-mRNA-1
tig0037798	exon	21896	22030	21896	ID=Msa1456810-mRNA-1:exon:20886;Parent=Msa1456810-mRNA-1
tig0037798	exon	22116	22244	22116	ID=Msa1456810-mRNA-1:exon:20885;Parent=Msa1456810-mRNA-1
tig0037798	exon	22325	22507	22325	ID=Msa1456810-mRNA-1:exon:20884;Parent=Msa1456810-mRNA-1
tig0037798	exon	23579	23683	23579	ID=Msa1456810-mRNA-1:exon:20883;Parent=Msa1456810-mRNA-1
tig0037798	exon	23760	24060	23760	ID=Msa1456810-mRNA-1:exon:20882;Parent=Msa1456810-mRNA-1
tig0037798	five_prime_UTR	23985	24060	23985	ID=Msa1456810-mRNA-1:five_prime_utr;Parent=Msa1456810-mRNA-1
tig0037798	CDS	23760	23984	23760	ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798	CDS	23579	23683	23579	ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798	CDS	22325	22507	22325	ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798	CDS	22116	22244	22116	ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798	CDS	21896	22030	21896	ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798	CDS	20750	20896	20750	ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798	CDS	20508	20582	20508	ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798	CDS	19050	19154	19050	ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798	three_prime_UTR	18697	19049	18697	ID=Msa1456810-mRNA-1:three_prime_utr;Parent=Msa1456810-mRNA-1

Gene Sequence

>Msa1456810

ATGGGTTGCAATATCATGAATTTCTCTACCACTTCTTCATCATCTTCTTTGAAGGGACTGTGCAGTCCAATTCCAAATAATAATCATAATCATAATCAGAAGAATAAGCTACAAAAAGCGCTTTCTTCATCTTCTTCATCTTCATTTTCACTTCGTTCTTCTTCTTCATCAAATGTCTTTCCTCTTCGTTCATCCTCTTCGCGACCCTTTTCTCATTCTTCTATGATTGTGAAAGCGGTGGCGAAGACGGAGGAGGAGCCACTTCATGTTATGATTTCCGGTGCACCTGCTTCTGGTAAAGGAACTCAATGTCACCTCATCACCAAGAAATGTGTCTTACCAGAATGTTTGGATCCCTTTCACATGGTGCAATTGCTGCAAGGCGGTTGGAGTTTAGACATAAACTTTGGACCTGGATCCAATGGCCTTGCAACCATTGCATCTTTTGTAGCCTTACAAAGGGATCCAAATTCCCAAATTCCTTACTATATTATTTTCTTGGCTTTGGGACAATACGGTTTGGTGCATGTTGCTGCTGGAGATTTACTTAGGGCGGAAATTGAAACCGGAAGTGAAAATGGAAAGCGTGCGAAAGAATATATGGAGAAGGGACAGTTGGTCCCTGATGAAATAGTTGTCATGATGGTCAAAGATCGTCTCTTGAAGCCAGATTCTGTAGAGAATGGTTGGCTTTTGGATGGATATCCCAGGAGCTTATCACAGGCTACTGCACTTAAGGAGTTAGGGTTTAAGCCTGATATTTTCATTCTTCTAGAGGTGTCTGAAGATATTCTTGTGGAGAGAGTAGTTGGAAGGAGATTAGATCCTGTTACTGGGAAGATATATCATTTGAAGTATTCTCCTCCAGAGACAAAAGAAATCGCGGATAGGCTCACCCAACGTTTTGATGATACTGAAGAGAAGGTAAAGTTGCGATTGAACACCCATCATCAAAATGTGGAGGCTGTCCTTTCCATGTATAAAGATATAACAATTAAGATTAATGGAAATTCCTCTCAGAAGGAAGTATTTGCTCAAATTGATGGTGCACTTACAACTCTTCTAGAGCAAAGGAAAGCTTCTTCAGAATCTATGGTAGCATAG

Protein sequence

>Msa1456810

MGCNIMNFSTTSSSSSLKGLCSPIPNNNHNHNQKNKLQKALSSSSSSSFSLRSSSSSNVFPLRSSSSRPFSHSSMIVKAVAKTEEEPLHVMISGAPASGKGTQCHLITKKCVLPECLDPFHMVQLLQGGWSLDINFGPGSNGLATIASFVALQRDPNSQIPYYIIFLALGQYGLVHVAAGDLLRAEIETGSENGKRAKEYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILLEVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQNVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA*