AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1456810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456810 MtrunA17_Chr4g0017231 76.965 369 20 7 1 367 1 306 0.0 525
Msa1456810 MtrunA17_Chr2g0305051 56.915 188 81 0 167 354 91 278 8.25e-68 224
Msa1456810 MtrunA17_Chr4g0057771 36.979 192 110 4 171 352 52 242 4.89e-35 129
Msa1456810 MtrunA17_Chr1g0181801 29.885 174 101 4 173 328 136 306 2.29e-16 79.3
Msa1456810 MtrunA17_Chr7g0263541 29.310 174 102 4 173 328 61 231 1.26e-15 76.3
Msa1456810 MtrunA17_Chr8g0337051 31.068 103 68 2 171 272 44 144 8.32e-14 69.7
Msa1456810 MtrunA17_Chr4g0018221 24.046 262 133 8 89 347 31 229 4.10e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456810 AT5G47840.1 75.635 197 48 0 171 367 87 283 4.37e-107 316
Msa1456810 AT5G47840.2 70.051 197 45 1 171 367 87 269 4.42e-96 287
Msa1456810 AT5G35170.2 55.208 192 86 0 167 358 98 289 6.69e-69 227
Msa1456810 AT5G35170.1 55.208 192 86 0 167 358 98 289 6.74e-69 227
Msa1456810 AT5G63400.1 34.896 192 114 4 171 352 56 246 1.98e-32 122
Msa1456810 AT5G50370.1 33.333 165 101 3 171 327 57 220 2.30e-28 111
Msa1456810 AT5G50370.2 33.540 161 98 3 171 323 57 216 3.06e-27 107
Msa1456810 AT5G63400.2 38.235 136 79 2 171 302 56 190 5.62e-27 106
Msa1456810 AT2G37250.1 29.885 174 101 4 173 328 76 246 3.81e-18 84.0
Msa1456810 AT2G39270.1 31.395 172 101 3 173 328 89 259 3.46e-17 81.6
Msa1456810 AT5G26667.1 26.768 198 109 5 171 362 37 204 1.93e-14 72.0
Msa1456810 AT5G26667.3 34.906 106 60 3 171 272 37 137 2.53e-14 71.6
Msa1456810 AT5G26667.2 34.906 106 60 3 171 272 37 137 2.53e-14 71.6
Msa1456810 AT5G26667.4 34.906 106 60 3 171 272 37 137 2.53e-14 71.6
Msa1456810 AT4G25280.1 31.304 115 76 2 172 285 77 189 7.59e-13 68.2
Msa1456810 AT4G25280.2 31.304 115 76 2 172 285 77 189 7.59e-13 68.2

Find 105 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTCATGTTATGATTTC+CGG 0.184990 tig0037798:-23628 Msa1456810:CDS
GTTTGGTTCCTCCCTGTTAC+TGG 0.196331 tig0037798:-18806 Msa1456810:three_prime_UTR
TAGTAAGGAATTTGGGAATT+TGG 0.201825 tig0037798:+22350 None:intergenic
AAATAATATAGTAAGGAATT+TGG 0.206316 tig0037798:+22342 None:intergenic
TTATGATTATGATTATTATT+TGG 0.225692 tig0037798:+23890 None:intergenic
CAATAATGATATACAGAAAA+TGG 0.248233 tig0037798:+18760 None:intergenic
GCTACTGCACTTAAGGAGTT+AGG 0.300266 tig0037798:-21927 Msa1456810:CDS
AAAGGATATATAATATAATA+TGG 0.304977 tig0037798:-24049 None:intergenic
ATTGAAACCGGAAGTGAAAA+TGG 0.306531 tig0037798:-22177 Msa1456810:CDS
TGTAGAGAATGGTTGGCTTT+TGG 0.314777 tig0037798:-21976 Msa1456810:CDS
ATTTCCGGTGCACCTGCTTC+TGG 0.315897 tig0037798:-23613 Msa1456810:CDS
AATAATATAGTAAGGAATTT+GGG 0.333159 tig0037798:+22343 None:intergenic
GAAAGCTTCTTCAGAATCTA+TGG 0.334801 tig0037798:-19058 Msa1456810:CDS
CGAGTCATAGTTTGTTGGTT+TGG 0.336884 tig0037798:-18823 Msa1456810:three_prime_UTR
CCAAAGGAAATAAAAGAATA+AGG 0.336928 tig0037798:-18717 Msa1456810:three_prime_UTR
GTATAAAGATATAACAATTA+AGG 0.337775 tig0037798:-20507 Msa1456810:intron
GCATATGAACCACCAGTAAC+AGG 0.349980 tig0037798:+18794 None:intergenic
TTATGATTATTATTTGGAAT+TGG 0.350423 tig0037798:+23896 None:intergenic
ATTCTTGTGGAGAGAGTAGT+TGG 0.351960 tig0037798:-20862 Msa1456810:CDS
TGATATATCTTCCCAGTAAC+AGG 0.355623 tig0037798:+20826 None:intergenic
TGAAAGGGATCCAAACATTC+TGG 0.359061 tig0037798:+22476 None:intergenic
AGGAGATTAGATCCTGTTAC+TGG 0.364620 tig0037798:-20838 Msa1456810:CDS
TCTAGAAGAATGAAAATATC+AGG 0.368176 tig0037798:+21897 None:intergenic
GAAGTATTTGCTCAAATTGA+TGG 0.377927 tig0037798:-19108 Msa1456810:CDS
ATCACAGGCTACTGCACTTA+AGG 0.378525 tig0037798:-21934 Msa1456810:CDS
TTCTTCATCATCTTCTTTGA+AGG 0.383124 tig0037798:-23930 Msa1456810:CDS
CAACCATTCTCTACAGAATC+TGG 0.393081 tig0037798:+21984 None:intergenic
AAAGCGTGCGAAAGAATATA+TGG 0.409628 tig0037798:-22154 Msa1456810:CDS
TTGCTGCTGGAGATTTACTT+AGG 0.410112 tig0037798:-22206 Msa1456810:CDS
TTGATAGTACAAAGTTGTAT+TGG 0.411071 tig0037798:-18898 Msa1456810:three_prime_UTR
CTACTGCACTTAAGGAGTTA+GGG 0.424190 tig0037798:-21926 Msa1456810:CDS
GTGTGTCTTACCAGAATGTT+TGG 0.425249 tig0037798:-22486 Msa1456810:CDS
ACCATGACAACTATTTCATC+AGG 0.443004 tig0037798:+22114 None:intergenic
TACCATAGAAGAATGAGAAA+AGG 0.443165 tig0037798:+23757 None:intergenic
TGCATATATGCAGTACGGTT+TGG 0.445973 tig0037798:-22235 Msa1456810:intron
GGTTTGGTGCATGTTGCTGC+TGG 0.446456 tig0037798:-22219 Msa1456810:CDS
GGAATTTGGATCCCTTTGTA+AGG 0.448673 tig0037798:+22364 None:intergenic
TGGAGTTTAGACATAAACTT+TGG 0.453693 tig0037798:-22428 Msa1456810:CDS
GAATCAACAAAATTAATAAG+AGG 0.456579 tig0037798:-24017 Msa1456810:five_prime_UTR
TTGTGGAGAGAGTAGTTGGA+AGG 0.459886 tig0037798:-20858 Msa1456810:CDS
TTCAGTATCATCAAAACGTT+GGG 0.461597 tig0037798:+20756 None:intergenic
GCCAAGAAAATAATATAGTA+AGG 0.463703 tig0037798:+22335 None:intergenic
GGTGCACCTGCTTCTGGTAA+AGG 0.464979 tig0037798:-23607 Msa1456810:CDS
AATTGTTATATCTTTATACA+TGG 0.470672 tig0037798:+20511 None:intergenic
TGCTGCTGGAGATTTACTTA+GGG 0.479317 tig0037798:-22205 Msa1456810:CDS
CTTAGGGCGGAAATTGAAAC+CGG 0.486128 tig0037798:-22189 Msa1456810:CDS
AGTAGCCTGTGATAAGCTCC+TGG 0.491046 tig0037798:+21944 None:intergenic
TGAGTTCCTTTACCAGAAGC+AGG 0.493219 tig0037798:+23601 None:intergenic
AAGCCAGATTCTGTAGAGAA+TGG 0.494738 tig0037798:-21987 Msa1456810:CDS
TGCAATGGTTGCAAGGCCAT+TGG 0.497474 tig0037798:+22397 None:intergenic
ACCATAGAAGAATGAGAAAA+GGG 0.498183 tig0037798:+23758 None:intergenic
TTATATCTTTATACATGGAA+AGG 0.508644 tig0037798:+20516 None:intergenic
TCTTCATCATCTTCTTTGAA+GGG 0.513126 tig0037798:-23929 Msa1456810:CDS
CAGCAATTGCACCATGTGAA+AGG 0.513276 tig0037798:+22460 None:intergenic
TGTGAAAGCGGTGGCGAAGA+CGG 0.516859 tig0037798:-23659 Msa1456810:CDS
GTTGCAAGGCCATTGGATCC+AGG 0.518977 tig0037798:+22404 None:intergenic
CAGATTCTGTAGAGAATGGT+TGG 0.520796 tig0037798:-21983 Msa1456810:CDS
AACTTTGGACCTGGATCCAA+TGG 0.521885 tig0037798:-22413 Msa1456810:CDS
AACTTACTTTCTTGGTGATG+AGG 0.524146 tig0037798:+23572 None:intergenic
CTTCAGTATCATCAAAACGT+TGG 0.527352 tig0037798:+20755 None:intergenic
CAAAGAAGATGATGAAGAAG+TGG 0.539826 tig0037798:+23934 None:intergenic
AGCAATTGCACCATGTGAAA+GGG 0.546652 tig0037798:+22461 None:intergenic
TGGTTCCTCCCTGTTACTGG+TGG 0.548985 tig0037798:-18803 Msa1456810:three_prime_UTR
TAATGGAAATTCCTCTCAGA+AGG 0.552468 tig0037798:-19130 Msa1456810:CDS
TTTACCAGAAGCAGGTGCAC+CGG 0.552509 tig0037798:+23609 None:intergenic
AGCGGTGGCGAAGACGGAGG+AGG 0.552869 tig0037798:-23653 Msa1456810:CDS
TGTAGCGAGTCATAGTTTGT+TGG 0.554883 tig0037798:-18828 Msa1456810:three_prime_UTR
AATCAACAAAATTAATAAGA+GGG 0.556950 tig0037798:-24016 Msa1456810:five_prime_UTR
CAAAAGATGCAATGGTTGCA+AGG 0.557105 tig0037798:+22390 None:intergenic
AATTCGTAAAATAAACTATG+AGG 0.558111 tig0037798:+18874 None:intergenic
TGCGAAAGAATATATGGAGA+AGG 0.559519 tig0037798:-22148 Msa1456810:CDS
TAAGGCTACAAAAGATGCAA+TGG 0.560793 tig0037798:+22382 None:intergenic
TCATTTGAGTGTGAAAATGA+AGG 0.563211 tig0037798:-18852 Msa1456810:three_prime_UTR
TTATGTATTCGATTTGCCAA+AGG 0.568312 tig0037798:-18733 Msa1456810:three_prime_UTR
TGCTGGAGATTTACTTAGGG+CGG 0.569705 tig0037798:-22202 Msa1456810:CDS
TTACAACTCTTCTAGAGCAA+AGG 0.576098 tig0037798:-19080 Msa1456810:CDS
CACATGGTGCAATTGCTGCA+AGG 0.577304 tig0037798:-22455 Msa1456810:CDS
AGCAAATACTTCCTTCTGAG+AGG 0.577991 tig0037798:+19119 None:intergenic
TATGATTCAGATTGTGAAAG+CGG 0.579020 tig0037798:-23671 Msa1456810:intron
ATTATAGTTTACCTTCAGCA+AGG 0.583358 tig0037798:+18971 None:intergenic
ATATATGGAGAAGGGACAGT+TGG 0.586158 tig0037798:-22139 Msa1456810:CDS
TGCAATTGCTGCAAGGCGGT+TGG 0.589268 tig0037798:-22448 Msa1456810:CDS
CCGGAAATCATAACATGAAG+TGG 0.589982 tig0037798:+23628 None:intergenic
TTAGACATAAACTTTGGACC+TGG 0.591012 tig0037798:-22422 Msa1456810:CDS
ATGTTTGGATCCCTTTCACA+TGG 0.594171 tig0037798:-22471 Msa1456810:CDS
ATATCCCAGGAGCTTATCAC+AGG 0.594589 tig0037798:-21949 Msa1456810:CDS
AGACAAAAGAAATCGCGGAT+AGG 0.596089 tig0037798:-20783 Msa1456810:CDS
CCCTGATGAAATAGTTGTCA+TGG 0.597046 tig0037798:-22115 Msa1456810:intron
ATACAGAAAATGGTAAAGAA+CGG 0.604015 tig0037798:+18770 None:intergenic
GGAGATTAGATCCTGTTACT+GGG 0.607211 tig0037798:-20837 Msa1456810:CDS
GCGAAAGAATATATGGAGAA+GGG 0.615803 tig0037798:-22147 Msa1456810:CDS
CATATGAACCACCAGTAACA+GGG 0.623448 tig0037798:+18795 None:intergenic
TTAACATGGTGCCTTGCTGA+AGG 0.631362 tig0037798:-18982 Msa1456810:three_prime_UTR
TCCAGAGACAAAAGAAATCG+CGG 0.637052 tig0037798:-20788 Msa1456810:CDS
GTAGCCTGTGATAAGCTCCT+GGG 0.640337 tig0037798:+21945 None:intergenic
CACCCATCATCAAAATGTGG+AGG 0.641846 tig0037798:-20543 Msa1456810:CDS
GATTCAGATTGTGAAAGCGG+TGG 0.642056 tig0037798:-23668 Msa1456810:intron
GGTGTCTGAAGATATTCTTG+TGG 0.642880 tig0037798:-20875 Msa1456810:CDS
ATGAGAAAAGGGTCGCGAAG+AGG 0.645968 tig0037798:+23769 None:intergenic
CCATGACAACTATTTCATCA+GGG 0.657389 tig0037798:+22115 None:intergenic
GAACACCCATCATCAAAATG+TGG 0.675841 tig0037798:-20546 Msa1456810:CDS
GAAAGCGGTGGCGAAGACGG+AGG 0.684721 tig0037798:-23656 Msa1456810:CDS
CGCGAAGAGGATGAACGAAG+AGG 0.691693 tig0037798:+23782 None:intergenic
ATGAACCACCAGTAACAGGG+AGG 0.771471 tig0037798:+18798 None:intergenic
ATGGTGCAATTGCTGCAAGG+CGG 0.793412 tig0037798:-22452 Msa1456810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTTATTTAT+TGG - tig0037798:19009-19028 Msa1456810:three_prime_UTR 0.0%
!! TTATGATTATGATTATTATT+TGG + tig0037798:18848-18867 None:intergenic 10.0%
!! TATTACATATATAGTTTAAA+GGG + tig0037798:21685-21704 None:intergenic 10.0%
!! AATCAACAAAATTAATAAGA+GGG - tig0037798:18719-18738 Msa1456810:three_prime_UTR 15.0%
!!! TTATGATTATTATTTGGAAT+TGG + tig0037798:18842-18861 None:intergenic 15.0%
!! AAAAAAAAAACTTACTTTCT+TGG + tig0037798:19174-19193 None:intergenic 15.0%
!! TTAAAAATAGTAGAAAAGTT+AGG + tig0037798:19342-19361 None:intergenic 15.0%
!!! AGGAAAGAAATTTTAATTAA+GGG + tig0037798:20072-20091 None:intergenic 15.0%
!! AATAATATAGTAAGGAATTT+GGG + tig0037798:20395-20414 None:intergenic 15.0%
!! AAATAATATAGTAAGGAATT+TGG + tig0037798:20396-20415 None:intergenic 15.0%
!!! GAATCAATTTTTTATTTCAA+TGG + tig0037798:20477-20496 None:intergenic 15.0%
!! ATATTTGAATATCAATTGTA+CGG + tig0037798:20669-20688 None:intergenic 15.0%
!!! TAACTCTTTTATTTAATAGA+TGG - tig0037798:20708-20727 Msa1456810:intron 15.0%
!!! ATAATGAAATATCGATATTT+TGG + tig0037798:21028-21047 None:intergenic 15.0%
!! AAAATATCGATATTTCATTA+TGG - tig0037798:21027-21046 Msa1456810:intron 15.0%
!! TATTCTTATTGAATAATATC+TGG - tig0037798:21132-21151 Msa1456810:intron 15.0%
!! TTAAAATAAAATTAAAGGTG+TGG - tig0037798:21597-21616 Msa1456810:intron 15.0%
!!! TAAAATAAAATTAAAGGTGT+GGG - tig0037798:21598-21617 Msa1456810:intron 15.0%
!! GTATTACATATATAGTTTAA+AGG + tig0037798:21686-21705 None:intergenic 15.0%
!! AATTGTTATATCTTTATACA+TGG + tig0037798:22227-22246 None:intergenic 15.0%
!! GTATAAAGATATAACAATTA+AGG - tig0037798:22228-22247 Msa1456810:intron 15.0%
!! TGAAGTGTATATTAAATAAT+TGG - tig0037798:22384-22403 Msa1456810:CDS 15.0%
!!! TTTTTTTTAAAAGGAAGAAA+AGG + tig0037798:22937-22956 None:intergenic 15.0%
!! AATAATCAATTTCTATTTAG+TGG + tig0037798:23311-23330 None:intergenic 15.0%
!! GAATCAACAAAATTAATAAG+AGG - tig0037798:18718-18737 Msa1456810:three_prime_UTR 20.0%
!!! GAGGAAAGAAATTTTAATTA+AGG + tig0037798:20073-20092 None:intergenic 20.0%
!!! TCCTTACTATATTATTTTCT+TGG - tig0037798:20399-20418 Msa1456810:intron 20.0%
!!! TATATTATTTTCTTGGCTTT+GGG - tig0037798:20406-20425 Msa1456810:intron 20.0%
!! ACTAAATACAATTACATGTA+TGG - tig0037798:21175-21194 Msa1456810:intron 20.0%
!! GTTATGTTAAGGAATATATA+GGG + tig0037798:21353-21372 None:intergenic 20.0%
!! TGTTATGTTAAGGAATATAT+AGG + tig0037798:21354-21373 None:intergenic 20.0%
!! TTGTTAGAAAACAATATAAG+AGG + tig0037798:21455-21474 None:intergenic 20.0%
!!! TTATATTGTTTTCTAACAAG+AGG - tig0037798:21456-21475 Msa1456810:intron 20.0%
!!! AATTTACAGTTCAAATTTTC+AGG - tig0037798:21839-21858 Msa1456810:intron 20.0%
!! ATAGATTAGAGTTTCTAATA+GGG + tig0037798:22017-22036 None:intergenic 20.0%
!! TATAGATTAGAGTTTCTAAT+AGG + tig0037798:22018-22037 None:intergenic 20.0%
!!! TTATTGTTTGTTTTCAACTT+AGG - tig0037798:22153-22172 Msa1456810:CDS 20.0%
!! TTATATCTTTATACATGGAA+AGG + tig0037798:22222-22241 None:intergenic 20.0%
!! ACATATTAAATATTAGCAGT+TGG - tig0037798:22857-22876 Msa1456810:intron 20.0%
!!! CTGTGATGATTTTTTTTAAA+AGG + tig0037798:22946-22965 None:intergenic 20.0%
!! GCATATTCTTATAATGTTAT+AGG + tig0037798:23076-23095 None:intergenic 20.0%
!! TAGAAATTGATTATTTCACA+AGG - tig0037798:23316-23335 Msa1456810:intron 20.0%
!! AATTCGTAAAATAAACTATG+AGG + tig0037798:23864-23883 None:intergenic 20.0%
!! CAATAATGATATACAGAAAA+TGG + tig0037798:23978-23997 None:intergenic 20.0%
!!! CATTTTCTGTATATCATTAT+TGG - tig0037798:23976-23995 Msa1456810:exon 20.0%
! AGCATTTATCTATCTTAAAC+CGG + tig0037798:19587-19606 None:intergenic 25.0%
!!! TTACCCTGTTTTTTAACAAT+AGG - tig0037798:19729-19748 Msa1456810:intron 25.0%
! AAGCCTATTGTTAAAAAACA+GGG + tig0037798:19735-19754 None:intergenic 25.0%
! AAAGCCTATTGTTAAAAAAC+AGG + tig0037798:19736-19755 None:intergenic 25.0%
!!! AGATAATCATTTTGATCCAT+CGG - tig0037798:19771-19790 Msa1456810:intron 25.0%
! ATATAATGCGATATTCCATT+TGG + tig0037798:20140-20159 None:intergenic 25.0%
! GCCAAGAAAATAATATAGTA+AGG + tig0037798:20403-20422 None:intergenic 25.0%
!! CTATATTATTTTCTTGGCTT+TGG - tig0037798:20405-20424 Msa1456810:intron 25.0%
! TCTAGAAGAATGAAAATATC+AGG + tig0037798:20841-20860 None:intergenic 25.0%
!! TGATATTTTCATTCTTCTAG+AGG - tig0037798:20840-20859 Msa1456810:CDS 25.0%
! GTTATGACTATGATATAAAC+TGG - tig0037798:21078-21097 Msa1456810:intron 25.0%
! ATTGAATAATATCTGGAGAA+AGG - tig0037798:21139-21158 Msa1456810:intron 25.0%
! GTGGACAAAAATATTTATAG+CGG + tig0037798:21431-21450 None:intergenic 25.0%
!!! TTAAAATTGTTTCTACGAAG+TGG + tig0037798:21581-21600 None:intergenic 25.0%
! GTTGTTCATATAATTGATCA+AGG + tig0037798:21708-21727 None:intergenic 25.0%
!! TATTTCTGTAGTAAGACTAA+TGG + tig0037798:21788-21807 None:intergenic 25.0%
! AGTCTTACTACAGAAATAAA+AGG - tig0037798:21790-21809 Msa1456810:intron 25.0%
! GTCTTACTACAGAAATAAAA+GGG - tig0037798:21791-21810 Msa1456810:intron 25.0%
!! TGCATTTTCTGATAAAAGAA+TGG + tig0037798:22057-22076 None:intergenic 25.0%
! ATTTCTCAAATCTGTAGTAA+TGG + tig0037798:22362-22381 None:intergenic 25.0%
! ACAATAATGTGACATTTAGT+GGG + tig0037798:22411-22430 None:intergenic 25.0%
! TACAATAATGTGACATTTAG+TGG + tig0037798:22412-22431 None:intergenic 25.0%
! TATTTATGTTCCCAAAACTT+TGG - tig0037798:22437-22456 Msa1456810:CDS 25.0%
!! TTTTCCATTACCAAAGTTTT+GGG + tig0037798:22450-22469 None:intergenic 25.0%
!! ATTTTCCATTACCAAAGTTT+TGG + tig0037798:22451-22470 None:intergenic 25.0%
!!! AACTTTGGTAATGGAAAATA+TGG - tig0037798:22452-22471 Msa1456810:CDS 25.0%
! CAGTTCTTCATATCATTATA+AGG - tig0037798:23095-23114 Msa1456810:intron 25.0%
! CTTCATATCATTATAAGGTT+CGG - tig0037798:23100-23119 Msa1456810:intron 25.0%
! TTCATATCATTATAAGGTTC+GGG - tig0037798:23101-23120 Msa1456810:intron 25.0%
! TTATCAGAAAAAACCCTTTA+TGG + tig0037798:23345-23364 None:intergenic 25.0%
!!! TAAAGGGTTTTTTCTGATAA+TGG - tig0037798:23345-23364 Msa1456810:intron 25.0%
! AATGGTGATAGTAATAACTA+TGG - tig0037798:23363-23382 Msa1456810:intron 25.0%
! ATGGTGATAGTAATAACTAT+GGG - tig0037798:23364-23383 Msa1456810:intron 25.0%
! ATTATATGTTTACTGTGTCT+TGG + tig0037798:23538-23557 None:intergenic 25.0%
!!! TTTTGTTGTCTACAGATTAA+TGG - tig0037798:23588-23607 Msa1456810:CDS 25.0%
!! TTGATAGTACAAAGTTGTAT+TGG - tig0037798:23837-23856 Msa1456810:CDS 25.0%
! ATACAGAAAATGGTAAAGAA+CGG + tig0037798:23968-23987 None:intergenic 25.0%
!!! CCTTATTCTTTTATTTCCTT+TGG + tig0037798:24021-24040 None:intergenic 25.0%
! CCAAAGGAAATAAAAGAATA+AGG - tig0037798:24018-24037 Msa1456810:five_prime_UTR 25.0%
AAGAGTAAGTGACGAAAAAA+TGG - tig0037798:18754-18773 Msa1456810:three_prime_UTR 30.0%
AGAGTAAGTGACGAAAAAAT+GGG - tig0037798:18755-18774 Msa1456810:three_prime_UTR 30.0%
TTCTTCATCATCTTCTTTGA+AGG - tig0037798:18805-18824 Msa1456810:three_prime_UTR 30.0%
TCTTCATCATCTTCTTTGAA+GGG - tig0037798:18806-18825 Msa1456810:three_prime_UTR 30.0%
ACCATAGAAGAATGAGAAAA+GGG + tig0037798:18980-18999 None:intergenic 30.0%
TACCATAGAAGAATGAGAAA+AGG + tig0037798:18981-19000 None:intergenic 30.0%
TATGATTCAGATTGTGAAAG+CGG - tig0037798:19064-19083 Msa1456810:CDS 30.0%
ATTAGCAGCATTAGCATAAT+AGG - tig0037798:19474-19493 Msa1456810:intron 30.0%
TCTTAAACCGGAAAATACTT+GGG + tig0037798:19575-19594 None:intergenic 30.0%
ATCTTAAACCGGAAAATACT+TGG + tig0037798:19576-19595 None:intergenic 30.0%
!! TTTAACAATAGGCTTTTTCC+AGG - tig0037798:19740-19759 Msa1456810:intron 30.0%
!! TTAACAATAGGCTTTTTCCA+GGG - tig0037798:19741-19760 Msa1456810:intron 30.0%
ATGATTATCTCAAATAACCC+TGG + tig0037798:19761-19780 None:intergenic 30.0%
!! GATAATCATTTTGATCCATC+GGG - tig0037798:19772-19791 Msa1456810:intron 30.0%
TCTTCATGTATAGTTCACAA+GGG + tig0037798:20095-20114 None:intergenic 30.0%
TGGAGTTTAGACATAAACTT+TGG - tig0037798:20307-20326 Msa1456810:intron 30.0%
!! ATCTTTTGTAGCCTTACAAA+GGG - tig0037798:20360-20379 Msa1456810:intron 30.0%
TAGTAAGGAATTTGGGAATT+TGG + tig0037798:20388-20407 None:intergenic 30.0%
!! TACTGATTCACTACTAGATA+AGG - tig0037798:20435-20454 Msa1456810:intron 30.0%
ATGAAATAGTTGTCATGGTA+TGG - tig0037798:20625-20644 Msa1456810:intron 30.0%
GATAAATTACAATGAAGCTG+AGG + tig0037798:20911-20930 None:intergenic 30.0%
TATTCCTAACTCTTACAGTT+TGG + tig0037798:21106-21125 None:intergenic 30.0%
AATACAGAGAATTCTGTACA+AGG - tig0037798:21211-21230 Msa1456810:intron 30.0%
CAAAAATATTTATAGCGGTC+AGG + tig0037798:21426-21445 None:intergenic 30.0%
AGAAAACAATATAAGAGGAG+TGG + tig0037798:21450-21469 None:intergenic 30.0%
TTCAGTATCATCAAAACGTT+GGG + tig0037798:21982-22001 None:intergenic 30.0%
!! TTTTGATGATACTGAAGAGA+AGG - tig0037798:21986-22005 Msa1456810:CDS 30.0%
TTTGCATATATGTAATCCCA+TGG + tig0037798:22099-22118 None:intergenic 30.0%
! AATATGGAGAGCGTAAAAAA+TGG - tig0037798:22468-22487 Msa1456810:CDS 30.0%
!! GTAATCTTGTTTGTTGTTTG+TGG - tig0037798:22575-22594 Msa1456810:intron 30.0%
!! GCATTCATATCTTGTTGTTA+TGG - tig0037798:22718-22737 Msa1456810:intron 30.0%
ATCTCATCAGAACAAGTATT+TGG + tig0037798:22885-22904 None:intergenic 30.0%
GCAAATTCTTTCTTCATTAC+AGG + tig0037798:23209-23228 None:intergenic 30.0%
AAAATGTGACACTAAGAAAG+TGG - tig0037798:23242-23261 Msa1456810:intron 30.0%
TAATAAATCCATGTGACAAG+CGG + tig0037798:23288-23307 None:intergenic 30.0%
AATAACTATGGGAAGAAGAA+AGG - tig0037798:23375-23394 Msa1456810:intron 30.0%
AAGTCATACGATGTCAATTT+CGG - tig0037798:23408-23427 Msa1456810:intron 30.0%
! GAAGTATTTGCTCAAATTGA+TGG - tig0037798:23627-23646 Msa1456810:CDS 30.0%
!!! TTTGTCGTTTTGATTTAGCA+TGG - tig0037798:23718-23737 Msa1456810:intron 30.0%
!!! GGTGTCTTTTTGATTTAACA+TGG - tig0037798:23739-23758 Msa1456810:intron 30.0%
ATTATAGTTTACCTTCAGCA+AGG + tig0037798:23767-23786 None:intergenic 30.0%
TCATTTGAGTGTGAAAATGA+AGG - tig0037798:23883-23902 Msa1456810:CDS 30.0%
! TTATGTATTCGATTTGCCAA+AGG - tig0037798:24002-24021 Msa1456810:five_prime_UTR 30.0%
CAAAGAAGATGATGAAGAAG+TGG + tig0037798:18804-18823 None:intergenic 35.0%
! ACCCTTTTCTCATTCTTCTA+TGG - tig0037798:18976-18995 Msa1456810:three_prime_UTR 35.0%
CCACTTCATGTTATGATTTC+CGG - tig0037798:19107-19126 Msa1456810:CDS 35.0%
!! AACTTACTTTCTTGGTGATG+AGG + tig0037798:19166-19185 None:intergenic 35.0%
AAAAGTTAGGTCATGAAGCA+CGG + tig0037798:19329-19348 None:intergenic 35.0%
ACTAGACTAGAGTAAGCATA+GGG + tig0037798:19540-19559 None:intergenic 35.0%
! TTGTTGTCATTTATCGACCA+TGG + tig0037798:19633-19652 None:intergenic 35.0%
TGGTCGATAAATGACAACAA+TGG - tig0037798:19633-19652 Msa1456810:intron 35.0%
GGTCGATAAATGACAACAAT+GGG - tig0037798:19634-19653 Msa1456810:intron 35.0%
! ACTCTTTTCTAACTCAACTC+TGG - tig0037798:19914-19933 Msa1456810:intron 35.0%
GTCTTCATGTATAGTTCACA+AGG + tig0037798:20096-20115 None:intergenic 35.0%
TTATATTCCTTTCCTCTCCT+CGG - tig0037798:20154-20173 Msa1456810:intron 35.0%
GTTGAACCAAATTTACCTAG+AGG - tig0037798:20176-20195 Msa1456810:intron 35.0%
AAGCATCCTCTAGGTAAATT+TGG + tig0037798:20185-20204 None:intergenic 35.0%
AAATTTACCTAGAGGATGCT+TGG - tig0037798:20184-20203 Msa1456810:intron 35.0%
AATTTACCTAGAGGATGCTT+GGG - tig0037798:20185-20204 Msa1456810:intron 35.0%
TTAGACATAAACTTTGGACC+TGG - tig0037798:20313-20332 Msa1456810:intron 35.0%
TAAGGCTACAAAAGATGCAA+TGG + tig0037798:20356-20375 None:intergenic 35.0%
!! CATCTTTTGTAGCCTTACAA+AGG - tig0037798:20359-20378 Msa1456810:intron 35.0%
TCAAGTGCATATATGCAGTA+CGG - tig0037798:20495-20514 Msa1456810:intron 35.0%
ATTGAAACCGGAAGTGAAAA+TGG - tig0037798:20558-20577 Msa1456810:CDS 35.0%
AAAGCGTGCGAAAGAATATA+TGG - tig0037798:20581-20600 Msa1456810:intron 35.0%
TGCGAAAGAATATATGGAGA+AGG - tig0037798:20587-20606 Msa1456810:intron 35.0%
GCGAAAGAATATATGGAGAA+GGG - tig0037798:20588-20607 Msa1456810:intron 35.0%
CCATGACAACTATTTCATCA+GGG + tig0037798:20623-20642 None:intergenic 35.0%
ACCATGACAACTATTTCATC+AGG + tig0037798:20624-20643 None:intergenic 35.0%
AATAGTTGTCATGGTATGGT+AGG - tig0037798:20629-20648 Msa1456810:intron 35.0%
ATAGTTGTCATGGTATGGTA+GGG - tig0037798:20630-20649 Msa1456810:intron 35.0%
GAATTCTGTACAAGGTGATA+CGG - tig0037798:21219-21238 Msa1456810:intron 35.0%
AATTCTGTACAAGGTGATAC+GGG - tig0037798:21220-21239 Msa1456810:intron 35.0%
!! TTACGGAAGGGAAGTATTTA+GGG + tig0037798:21289-21308 None:intergenic 35.0%
GAATATATAGGGAAAGACAG+GGG + tig0037798:21342-21361 None:intergenic 35.0%
GGAATATATAGGGAAAGACA+GGG + tig0037798:21343-21362 None:intergenic 35.0%
AGGAATATATAGGGAAAGAC+AGG + tig0037798:21344-21363 None:intergenic 35.0%
AGTTACAGCGTGTTATGTTA+AGG + tig0037798:21364-21383 None:intergenic 35.0%
TGATATATCTTCCCAGTAAC+AGG + tig0037798:21912-21931 None:intergenic 35.0%
CTTCAGTATCATCAAAACGT+TGG + tig0037798:21983-22002 None:intergenic 35.0%
! CAAATCTGTAGTAATGGAGA+GGG + tig0037798:22356-22375 None:intergenic 35.0%
! TCAAATCTGTAGTAATGGAG+AGG + tig0037798:22357-22376 None:intergenic 35.0%
TGTTCCCAAAACTTTGGTAA+TGG - tig0037798:22443-22462 Msa1456810:CDS 35.0%
TACTGATAGACATGGTTGAT+TGG + tig0037798:22626-22645 None:intergenic 35.0%
GCATACAATACTGATAGACA+TGG + tig0037798:22634-22653 None:intergenic 35.0%
AGTATTGTATGCTACCAATG+TGG - tig0037798:22642-22661 Msa1456810:intron 35.0%
TGTTATGGATAAGATGCCAA+CGG - tig0037798:22733-22752 Msa1456810:intron 35.0%
TCATAGTGTAAGCAAAACGA+GGG - tig0037798:22776-22795 Msa1456810:intron 35.0%
!! GAGAAGTGTCTTATTGTGAT+AGG - tig0037798:22832-22851 Msa1456810:intron 35.0%
GTGTGAGGAAAAATGATTGA+GGG - tig0037798:22995-23014 Msa1456810:intron 35.0%
AGGAAAAATGATTGAGGGAT+GGG - tig0037798:23000-23019 Msa1456810:intron 35.0%
TGATAAATAGGCTGAAACAC+TGG - tig0037798:23023-23042 Msa1456810:intron 35.0%
TCAGAAAAAACCCTTTATGG+TGG + tig0037798:23342-23361 None:intergenic 35.0%
AGTCATACGATGTCAATTTC+GGG - tig0037798:23409-23428 Msa1456810:intron 35.0%
TAATGGAAATTCCTCTCAGA+AGG - tig0037798:23605-23624 Msa1456810:CDS 35.0%
!! TTACAACTCTTCTAGAGCAA+AGG - tig0037798:23655-23674 Msa1456810:CDS 35.0%
GAAAGCTTCTTCAGAATCTA+TGG - tig0037798:23677-23696 Msa1456810:intron 35.0%
CCGGAAATCATAACATGAAG+TGG + tig0037798:19110-19129 None:intergenic 40.0%
CAATTTGAGCCTATGAAGCA+TGG - tig0037798:19212-19231 Msa1456810:intron 40.0%
TATGAAGCATGGATGTTCCT+CGG - tig0037798:19223-19242 Msa1456810:intron 40.0%
ATGAAGCACGGATAAAGACA+CGG + tig0037798:19317-19336 None:intergenic 40.0%
CACTAGACTAGAGTAAGCAT+AGG + tig0037798:19541-19560 None:intergenic 40.0%
ACTCTAGTCTAGTGTGCTAA+AGG - tig0037798:19547-19566 Msa1456810:intron 40.0%
!!! AAAGGCACCCAAGTATTTTC+CGG - tig0037798:19565-19584 Msa1456810:intron 40.0%
ATGCTTACTCTAATCTGCCA+TGG - tig0037798:19602-19621 Msa1456810:intron 40.0%
! TTGTCATTTATCGACCATGG+TGG + tig0037798:19630-19649 None:intergenic 40.0%
GCGTACAATACACCAATTGT+GGG + tig0037798:19705-19724 None:intergenic 40.0%
TGCGTACAATACACCAATTG+TGG + tig0037798:19706-19725 None:intergenic 40.0%
!! AATCATTTTGATCCATCGGG+TGG - tig0037798:19775-19794 Msa1456810:intron 40.0%
!! ATCATTTTGATCCATCGGGT+GGG - tig0037798:19776-19795 Msa1456810:intron 40.0%
! ACAAATCCCCCAATTTTGGA+GGG + tig0037798:19943-19962 None:intergenic 40.0%
! TACAAATCCCCCAATTTTGG+AGG + tig0037798:19944-19963 None:intergenic 40.0%
TCCAAAATTGGGGGATTTGT+AGG - tig0037798:19943-19962 Msa1456810:intron 40.0%
CCAAAATTGGGGGATTTGTA+GGG - tig0037798:19944-19963 Msa1456810:intron 40.0%
CAAAATTGGGGGATTTGTAG+GGG - tig0037798:19945-19964 Msa1456810:intron 40.0%
TCATGTATAGTTCACAAGGG+AGG + tig0037798:20092-20111 None:intergenic 40.0%
TATTCCATTTGGTCAAGAGG+AGG + tig0037798:20129-20148 None:intergenic 40.0%
CGATATTCCATTTGGTCAAG+AGG + tig0037798:20132-20151 None:intergenic 40.0%
! AGGTAAATTTGGTTCAACCG+AGG + tig0037798:20174-20193 None:intergenic 40.0%
ATTTACCTAGAGGATGCTTG+GGG - tig0037798:20186-20205 Msa1456810:intron 40.0%
GTGTGTCTTACCAGAATGTT+TGG - tig0037798:20249-20268 Msa1456810:intron 40.0%
TGAAAGGGATCCAAACATTC+TGG + tig0037798:20262-20281 None:intergenic 40.0%
ATGTTTGGATCCCTTTCACA+TGG - tig0037798:20264-20283 Msa1456810:intron 40.0%
AGCAATTGCACCATGTGAAA+GGG + tig0037798:20277-20296 None:intergenic 40.0%
CAAAAGATGCAATGGTTGCA+AGG + tig0037798:20348-20367 None:intergenic 40.0%
GGAATTTGGATCCCTTTGTA+AGG + tig0037798:20374-20393 None:intergenic 40.0%
TGCATATATGCAGTACGGTT+TGG - tig0037798:20500-20519 Msa1456810:intron 40.0%
TTGCTGCTGGAGATTTACTT+AGG - tig0037798:20529-20548 Msa1456810:CDS 40.0%
TGCTGCTGGAGATTTACTTA+GGG - tig0037798:20530-20549 Msa1456810:CDS 40.0%
! ACGCTTTCCATTTTCACTTC+CGG + tig0037798:20568-20587 None:intergenic 40.0%
ATATATGGAGAAGGGACAGT+TGG - tig0037798:20596-20615 Msa1456810:intron 40.0%
CCCTGATGAAATAGTTGTCA+TGG - tig0037798:20620-20639 Msa1456810:intron 40.0%
TCATGGTATGGTAGGGTAAA+TGG - tig0037798:20637-20656 Msa1456810:intron 40.0%
AAGCCAGATTCTGTAGAGAA+TGG - tig0037798:20748-20767 Msa1456810:intron 40.0%
CAACCATTCTCTACAGAATC+TGG + tig0037798:20754-20773 None:intergenic 40.0%
CAGATTCTGTAGAGAATGGT+TGG - tig0037798:20752-20771 Msa1456810:CDS 40.0%
!!! TGTAGAGAATGGTTGGCTTT+TGG - tig0037798:20759-20778 Msa1456810:CDS 40.0%
CTACTGCACTTAAGGAGTTA+GGG - tig0037798:20809-20828 Msa1456810:CDS 40.0%
! CTTCTAGAGGTAAACACTTG+TGG - tig0037798:20853-20872 Msa1456810:CDS 40.0%
!!! AGATGCAAGGTTTTGTTGAG+AGG + tig0037798:21055-21074 None:intergenic 40.0%
TCTCAACAAAACCTTGCATC+TGG - tig0037798:21054-21073 Msa1456810:intron 40.0%
TAGTCATAACTCCAGATGCA+AGG + tig0037798:21068-21087 None:intergenic 40.0%
GGTACCAAACTGTAAGAGTT+AGG - tig0037798:21099-21118 Msa1456810:intron 40.0%
AGGTCAAGCTCTCTAATACT+TGG + tig0037798:21260-21279 None:intergenic 40.0%
!! GTTACGGAAGGGAAGTATTT+AGG + tig0037798:21290-21309 None:intergenic 40.0%
!! TGGATGGTAATGGCTGTATA+GGG + tig0037798:21495-21514 None:intergenic 40.0%
!! TTGGATGGTAATGGCTGTAT+AGG + tig0037798:21496-21515 None:intergenic 40.0%
CCATTACCATCCAAGTGAAA+GGG - tig0037798:21502-21521 Msa1456810:intron 40.0%
CATTACCATCCAAGTGAAAG+GGG - tig0037798:21503-21522 Msa1456810:intron 40.0%
GTTTCTACGAAGTGGCAAAA+TGG + tig0037798:21573-21592 None:intergenic 40.0%
!! TAGCAGAATAGTGGACTCAT+TGG - tig0037798:21627-21646 Msa1456810:intron 40.0%
GGTGTCTGAAGATATTCTTG+TGG - tig0037798:21860-21879 Msa1456810:intron 40.0%
ATTCTTGTGGAGAGAGTAGT+TGG - tig0037798:21873-21892 Msa1456810:intron 40.0%
AGGAGATTAGATCCTGTTAC+TGG - tig0037798:21897-21916 Msa1456810:CDS 40.0%
GGAGATTAGATCCTGTTACT+GGG - tig0037798:21898-21917 Msa1456810:CDS 40.0%
TCCAGAGACAAAAGAAATCG+CGG - tig0037798:21947-21966 Msa1456810:CDS 40.0%
AGACAAAAGAAATCGCGGAT+AGG - tig0037798:21952-21971 Msa1456810:CDS 40.0%
GAACACCCATCATCAAAATG+TGG - tig0037798:22189-22208 Msa1456810:CDS 40.0%
!! AGCCTCCACATTTTGATGAT+GGG + tig0037798:22197-22216 None:intergenic 40.0%
ATACACGTGTCAACATGAGT+TGG - tig0037798:22302-22321 Msa1456810:intron 40.0%
TACACGTGTCAACATGAGTT+GGG - tig0037798:22303-22322 Msa1456810:intron 40.0%
AATGGAGACAGAAAATGGAG+AGG + tig0037798:22331-22350 None:intergenic 40.0%
GGGAAAATGGAGACAGAAAA+TGG + tig0037798:22336-22355 None:intergenic 40.0%
! GTAGTAATGGAGAGGGAAAA+TGG + tig0037798:22349-22368 None:intergenic 40.0%
GTATCCTTACAAGATGTGGA+CGG + tig0037798:22508-22527 None:intergenic 40.0%
AGACGTATCCTTACAAGATG+TGG + tig0037798:22512-22531 None:intergenic 40.0%
CTTGTAAGGATACGTCTATG+AGG - tig0037798:22515-22534 Msa1456810:intron 40.0%
GTCATAGTGTAAGCAAAACG+AGG - tig0037798:22775-22794 Msa1456810:intron 40.0%
AGCTAGAAAACCCTGATGAT+TGG - tig0037798:22973-22992 Msa1456810:intron 40.0%
TTTCCTCACACCAATCATCA+GGG + tig0037798:22986-23005 None:intergenic 40.0%
! TTTTCCTCACACCAATCATC+AGG + tig0037798:22987-23006 None:intergenic 40.0%
GGTGTGAGGAAAAATGATTG+AGG - tig0037798:22994-23013 Msa1456810:intron 40.0%
GAGGAAAAATGATTGAGGGA+TGG - tig0037798:22999-23018 Msa1456810:intron 40.0%
TTGAGGGATGGGTGATAAAT+AGG - tig0037798:23011-23030 Msa1456810:intron 40.0%
ATTTCACAAGGCCACCATAA+AGG - tig0037798:23328-23347 Msa1456810:intron 40.0%
TTTCACAAGGCCACCATAAA+GGG - tig0037798:23329-23348 Msa1456810:intron 40.0%
GTCATACGATGTCAATTTCG+GGG - tig0037798:23410-23429 Msa1456810:intron 40.0%
AGCAAATACTTCCTTCTGAG+AGG + tig0037798:23619-23638 None:intergenic 40.0%
! TGTAGCGAGTCATAGTTTGT+TGG - tig0037798:23907-23926 Msa1456810:CDS 40.0%
!! CGAGTCATAGTTTGTTGGTT+TGG - tig0037798:23912-23931 Msa1456810:CDS 40.0%
CATATGAACCACCAGTAACA+GGG + tig0037798:23943-23962 None:intergenic 40.0%
GATTCAGATTGTGAAAGCGG+TGG - tig0037798:19067-19086 Msa1456810:CDS 45.0%
TGAGTTCCTTTACCAGAAGC+AGG + tig0037798:19137-19156 None:intergenic 45.0%
GAGGAACATCCATGCTTCAT+AGG + tig0037798:19224-19243 None:intergenic 45.0%
ATTAGACATGTGTCCGACAC+CGG + tig0037798:19261-19280 None:intergenic 45.0%
AGTAAAGGTCCCGCATACAT+AGG - tig0037798:19665-19684 Msa1456810:intron 45.0%
GTAAAGGTCCCGCATACATA+GGG - tig0037798:19666-19685 Msa1456810:intron 45.0%
!! TCATTTTGATCCATCGGGTG+GGG - tig0037798:19777-19796 Msa1456810:intron 45.0%
GGGTTGTGTTGGACTAAGTT+TGG - tig0037798:19807-19826 Msa1456810:intron 45.0%
TTTGCCTGTCACATAGTGTC+TGG - tig0037798:19848-19867 Msa1456810:intron 45.0%
! TCTGGCTTCCCTCCAAAATT+GGG - tig0037798:19932-19951 Msa1456810:intron 45.0%
! CCCTACAAATCCCCCAATTT+TGG + tig0037798:19947-19966 None:intergenic 45.0%
! AATTTGGTTCAACCGAGGAG+AGG + tig0037798:20169-20188 None:intergenic 45.0%
GTAAGACACACTACGAGTTC+GGG + tig0037798:20240-20259 None:intergenic 45.0%
GGTAAGACACACTACGAGTT+CGG + tig0037798:20241-20260 None:intergenic 45.0%
CAGCAATTGCACCATGTGAA+AGG + tig0037798:20278-20297 None:intergenic 45.0%
AACTTTGGACCTGGATCCAA+TGG - tig0037798:20322-20341 Msa1456810:intron 45.0%
TGCTGGAGATTTACTTAGGG+CGG - tig0037798:20533-20552 Msa1456810:CDS 45.0%
CTTAGGGCGGAAATTGAAAC+CGG - tig0037798:20546-20565 Msa1456810:CDS 45.0%
!!! GAGAATGGTTGGCTTTTGGA+TGG - tig0037798:20763-20782 Msa1456810:CDS 45.0%
ATATCCCAGGAGCTTATCAC+AGG - tig0037798:20786-20805 Msa1456810:CDS 45.0%
ATCACAGGCTACTGCACTTA+AGG - tig0037798:20801-20820 Msa1456810:CDS 45.0%
GCTACTGCACTTAAGGAGTT+AGG - tig0037798:20808-20827 Msa1456810:CDS 45.0%
AAGGTGATACGGGTTTCACT+TGG - tig0037798:21230-21249 Msa1456810:intron 45.0%
!! GGAAGGGAAGTATTTAGGGA+GGG + tig0037798:21285-21304 None:intergenic 45.0%
GTGTTTAGGTGGTTACGGAA+GGG + tig0037798:21301-21320 None:intergenic 45.0%
AGTGTTTAGGTGGTTACGGA+AGG + tig0037798:21302-21321 None:intergenic 45.0%
!! GGGAAGTGTTTAGGTGGTTA+CGG + tig0037798:21306-21325 None:intergenic 45.0%
!! GTTACTGGGAAGTGTTTAGG+TGG + tig0037798:21312-21331 None:intergenic 45.0%
!! GTGGTTACTGGGAAGTGTTT+AGG + tig0037798:21315-21334 None:intergenic 45.0%
ACAGGGGAAAAGTGGTTACT+GGG + tig0037798:21326-21345 None:intergenic 45.0%
GCCATTACCATCCAAGTGAA+AGG - tig0037798:21501-21520 Msa1456810:intron 45.0%
CCCTTTCACTTGGATGGTAA+TGG + tig0037798:21505-21524 None:intergenic 45.0%
GGGATGATGTAGCAGAATAG+TGG - tig0037798:21618-21637 Msa1456810:intron 45.0%
TGTTGTGACCTTGCAGTTGA+AGG - tig0037798:21733-21752 Msa1456810:intron 45.0%
TAGTGTCTCCTTCAACTGCA+AGG + tig0037798:21744-21763 None:intergenic 45.0%
TTGTGGAGAGAGTAGTTGGA+AGG - tig0037798:21877-21896 Msa1456810:intron 45.0%
! GCGATTTCTTTTGTCTCTGG+AGG + tig0037798:21948-21967 None:intergenic 45.0%
! TCCGCGATTTCTTTTGTCTC+TGG + tig0037798:21951-21970 None:intergenic 45.0%
ATGCTCTCTGTTGACAACCA+TGG - tig0037798:22079-22098 Msa1456810:intron 45.0%
TGCTCTCTGTTGACAACCAT+GGG - tig0037798:22080-22099 Msa1456810:intron 45.0%
CACCCATCATCAAAATGTGG+AGG - tig0037798:22192-22211 Msa1456810:CDS 45.0%
!! CAGCCTCCACATTTTGATGA+TGG + tig0037798:22198-22217 None:intergenic 45.0%
! GGAGAGCGTAAAAAATGGAG+AGG - tig0037798:22473-22492 Msa1456810:CDS 45.0%
AACTCCGTCCACATCTTGTA+AGG - tig0037798:22501-22520 Msa1456810:intron 45.0%
!! AAGGATTGGCTACTCCACAT+TGG + tig0037798:22659-22678 None:intergenic 45.0%
TCTACTGCGGTAACAAGGAT+TGG + tig0037798:22673-22692 None:intergenic 45.0%
GGTAAACACACACACATCAG+TGG - tig0037798:22797-22816 Msa1456810:intron 45.0%
AAACCCTGATGATTGGTGTG+AGG - tig0037798:22980-22999 Msa1456810:intron 45.0%
CATGCACTCGAAACACTATC+TGG - tig0037798:23451-23470 Msa1456810:intron 45.0%
TGTCTTGGCTATGCATTAGC+AGG + tig0037798:23523-23542 None:intergenic 45.0%
TTAACATGGTGCCTTGCTGA+AGG - tig0037798:23753-23772 Msa1456810:intron 45.0%
GCATATGAACCACCAGTAAC+AGG + tig0037798:23944-23963 None:intergenic 45.0%
!!! CAATTTTAAAATAAAATTAA+AGG - tig0037798:21592-21611 Msa1456810:intron 5.0%
ATGAGAAAAGGGTCGCGAAG+AGG + tig0037798:18969-18988 None:intergenic 50.0%
TTTACCAGAAGCAGGTGCAC+CGG + tig0037798:19129-19148 None:intergenic 50.0%
GCATGGATGTTCCTCGGATT+AGG - tig0037798:19229-19248 Msa1456810:intron 50.0%
TTAGACATGTGTCCGACACC+GGG + tig0037798:19260-19279 None:intergenic 50.0%
CACGGATAAAGACACGGACA+CGG + tig0037798:19311-19330 None:intergenic 50.0%
TTCCCAGACCCTATGTATGC+GGG + tig0037798:19677-19696 None:intergenic 50.0%
CTTCCCAGACCCTATGTATG+CGG + tig0037798:19678-19697 None:intergenic 50.0%
GCATACATAGGGTCTGGGAA+GGG - tig0037798:19677-19696 Msa1456810:intron 50.0%
CATACATAGGGTCTGGGAAG+GGG - tig0037798:19678-19697 Msa1456810:intron 50.0%
CTGTCACATAGTGTCTGGCT+GGG - tig0037798:19853-19872 Msa1456810:intron 50.0%
TGTCACATAGTGTCTGGCTG+GGG - tig0037798:19854-19873 Msa1456810:intron 50.0%
TAGTGTCTGGCTGGGGAAAA+TGG - tig0037798:19861-19880 Msa1456810:intron 50.0%
GGAAAATGGAGTGGACGGAA+GGG - tig0037798:19875-19894 Msa1456810:intron 50.0%
! CTCTGGCTTCCCTCCAAAAT+TGG - tig0037798:19931-19950 Msa1456810:intron 50.0%
CTGGCTTCCCTCCAAAATTG+GGG - tig0037798:19933-19952 Msa1456810:intron 50.0%
TGGCTTCCCTCCAAAATTGG+GGG - tig0037798:19934-19953 Msa1456810:intron 50.0%
TTCGCCTCCTCTTGACCAAA+TGG - tig0037798:20122-20141 Msa1456810:intron 50.0%
CACATGGTGCAATTGCTGCA+AGG - tig0037798:20280-20299 Msa1456810:intron 50.0%
ATGGTGCAATTGCTGCAAGG+CGG - tig0037798:20283-20302 Msa1456810:intron 50.0%
TGCAATGGTTGCAAGGCCAT+TGG + tig0037798:20341-20360 None:intergenic 50.0%
! GGCTTTTGGATGGATATCCC+AGG - tig0037798:20773-20792 Msa1456810:CDS 50.0%
GTAGCCTGTGATAAGCTCCT+GGG + tig0037798:20793-20812 None:intergenic 50.0%
AGTAGCCTGTGATAAGCTCC+TGG + tig0037798:20794-20813 None:intergenic 50.0%
!! GGAAGTATTTAGGGAGGGAG+AGG + tig0037798:21280-21299 None:intergenic 50.0%
!! CGGAAGGGAAGTATTTAGGG+AGG + tig0037798:21286-21305 None:intergenic 50.0%
GACAGGGGAAAAGTGGTTAC+TGG + tig0037798:21327-21346 None:intergenic 50.0%
AGGGAAAGACAGGGGAAAAG+TGG + tig0037798:21334-21353 None:intergenic 50.0%
CAATGCATGCCCCTTTCACT+TGG + tig0037798:21515-21534 None:intergenic 50.0%
ATAGGCTGAAACACTGGCAG+TGG - tig0037798:23029-23048 Msa1456810:intron 50.0%
AGATGACACCGCTTGTCACA+TGG - tig0037798:23277-23296 Msa1456810:intron 50.0%
! GTTTGGTTCCTCCCTGTTAC+TGG - tig0037798:23929-23948 Msa1456810:CDS 50.0%
ATGAACCACCAGTAACAGGG+AGG + tig0037798:23940-23959 None:intergenic 50.0%
CGCGAAGAGGATGAACGAAG+AGG + tig0037798:18956-18975 None:intergenic 55.0%
TGTGAAAGCGGTGGCGAAGA+CGG - tig0037798:19076-19095 Msa1456810:CDS 55.0%
ATTTCCGGTGCACCTGCTTC+TGG - tig0037798:19122-19141 Msa1456810:CDS 55.0%
GGTGCACCTGCTTCTGGTAA+AGG - tig0037798:19128-19147 Msa1456810:CDS 55.0%
! TCCTCGGATTAGGCATGTCC+CGG - tig0037798:19239-19258 Msa1456810:intron 55.0%
GATTAGGCATGTCCCGGTGT+CGG - tig0037798:19245-19264 Msa1456810:intron 55.0%
CAATGGGCCCAGTGCAGTAA+AGG - tig0037798:19650-19669 Msa1456810:intron 55.0%
TGCGGGACCTTTACTGCACT+GGG + tig0037798:19660-19679 None:intergenic 55.0%
ATGCGGGACCTTTACTGCAC+TGG + tig0037798:19661-19680 None:intergenic 55.0%
GTCCCGCATACATAGGGTCT+GGG - tig0037798:19672-19691 Msa1456810:intron 55.0%
CGCATACATAGGGTCTGGGA+AGG - tig0037798:19676-19695 Msa1456810:intron 55.0%
TTTGATCCATCGGGTGGGGT+AGG - tig0037798:19781-19800 Msa1456810:intron 55.0%
CCAGCCAGACACTATGTGAC+AGG + tig0037798:19855-19874 None:intergenic 55.0%
CCTGTCACATAGTGTCTGGC+TGG - tig0037798:19852-19871 Msa1456810:intron 55.0%
TCTGGCTGGGGAAAATGGAG+TGG - tig0037798:19866-19885 Msa1456810:intron 55.0%
GCTGGGGAAAATGGAGTGGA+CGG - tig0037798:19870-19889 Msa1456810:intron 55.0%
GGGAAAATGGAGTGGACGGA+AGG - tig0037798:19874-19893 Msa1456810:intron 55.0%
AATGGAGTGGACGGAAGGGA+AGG - tig0037798:19879-19898 Msa1456810:intron 55.0%
ATGGAGTGGACGGAAGGGAA+GGG - tig0037798:19880-19899 Msa1456810:intron 55.0%
ACGGAAGGGAAGGGAAGAGA+GGG - tig0037798:19889-19908 Msa1456810:intron 55.0%
GGTTCAACCGAGGAGAGGAA+AGG + tig0037798:20164-20183 None:intergenic 55.0%
AGAGTCCCCAAGCATCCTCT+AGG + tig0037798:20194-20213 None:intergenic 55.0%
TGCAATTGCTGCAAGGCGGT+TGG - tig0037798:20287-20306 Msa1456810:intron 55.0%
GTTGCAAGGCCATTGGATCC+AGG + tig0037798:20334-20353 None:intergenic 55.0%
!! GGTTTGGTGCATGTTGCTGC+TGG - tig0037798:20516-20535 Msa1456810:CDS 55.0%
GCATGCCCCTTTCACTTGGA+TGG + tig0037798:21511-21530 None:intergenic 55.0%
TAAGGTTCGGGCTCGAGCAA+CGG - tig0037798:23113-23132 Msa1456810:intron 55.0%
TGGTTCCTCCCTGTTACTGG+TGG - tig0037798:23932-23951 Msa1456810:CDS 55.0%
ACCGGGACATGCCTAATCCG+AGG + tig0037798:19243-19262 None:intergenic 60.0%
AATCTGCCATGGCGCCACCA+TGG - tig0037798:19613-19632 Msa1456810:intron 60.0%
! TATCGACCATGGTGGCGCCA+TGG + tig0037798:19622-19641 None:intergenic 60.0%
GGTCCCGCATACATAGGGTC+TGG - tig0037798:19671-19690 Msa1456810:intron 60.0%
CTGGGAAGGGGTCCCACAAT+TGG - tig0037798:19690-19709 Msa1456810:intron 60.0%
ATCCATCGGGTGGGGTAGGT+AGG - tig0037798:19785-19804 Msa1456810:intron 60.0%
TCCATCGGGTGGGGTAGGTA+GGG - tig0037798:19786-19805 Msa1456810:intron 60.0%
GGGGTAGGTAGGGGTTGTGT+TGG - tig0037798:19796-19815 Msa1456810:intron 60.0%
GACGGAAGGGAAGGGAAGAG+AGG - tig0037798:19888-19907 Msa1456810:intron 60.0%
GTGTGCGTCAAACGAGCCGT+TGG + tig0037798:22752-22771 None:intergenic 60.0%
CGGCTCGTTTGACGCACACT+TGG - tig0037798:22753-22772 Msa1456810:intron 60.0%
AAGGTTCGGGCTCGAGCAAC+GGG - tig0037798:23114-23133 Msa1456810:intron 60.0%
GAAAGCGGTGGCGAAGACGG+AGG - tig0037798:19079-19098 Msa1456810:CDS 65.0%
CCATCGGGTGGGGTAGGTAG+GGG - tig0037798:19787-19806 Msa1456810:intron 65.0%
AGCGGTGGCGAAGACGGAGG+AGG - tig0037798:19082-19101 Msa1456810:CDS 70.0%
CCCCTACCTACCCCACCCGA+TGG + tig0037798:19790-19809 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0037798 gene 18697 24060 18697 ID=Msa1456810;Name=Msa1456810
tig0037798 mRNA 18697 24060 18697 ID=Msa1456810-mRNA-1;Parent=Msa1456810;Name=Msa1456810-mRNA-1;_AED=0.10;_eAED=0.10;_QI=76|0.71|0.87|0.87|1|1|8|353|367
tig0037798 exon 18697 19154 18697 ID=Msa1456810-mRNA-1:exon:20889;Parent=Msa1456810-mRNA-1
tig0037798 exon 20508 20582 20508 ID=Msa1456810-mRNA-1:exon:20888;Parent=Msa1456810-mRNA-1
tig0037798 exon 20750 20896 20750 ID=Msa1456810-mRNA-1:exon:20887;Parent=Msa1456810-mRNA-1
tig0037798 exon 21896 22030 21896 ID=Msa1456810-mRNA-1:exon:20886;Parent=Msa1456810-mRNA-1
tig0037798 exon 22116 22244 22116 ID=Msa1456810-mRNA-1:exon:20885;Parent=Msa1456810-mRNA-1
tig0037798 exon 22325 22507 22325 ID=Msa1456810-mRNA-1:exon:20884;Parent=Msa1456810-mRNA-1
tig0037798 exon 23579 23683 23579 ID=Msa1456810-mRNA-1:exon:20883;Parent=Msa1456810-mRNA-1
tig0037798 exon 23760 24060 23760 ID=Msa1456810-mRNA-1:exon:20882;Parent=Msa1456810-mRNA-1
tig0037798 five_prime_UTR 23985 24060 23985 ID=Msa1456810-mRNA-1:five_prime_utr;Parent=Msa1456810-mRNA-1
tig0037798 CDS 23760 23984 23760 ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798 CDS 23579 23683 23579 ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798 CDS 22325 22507 22325 ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798 CDS 22116 22244 22116 ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798 CDS 21896 22030 21896 ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798 CDS 20750 20896 20750 ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798 CDS 20508 20582 20508 ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798 CDS 19050 19154 19050 ID=Msa1456810-mRNA-1:cds;Parent=Msa1456810-mRNA-1
tig0037798 three_prime_UTR 18697 19049 18697 ID=Msa1456810-mRNA-1:three_prime_utr;Parent=Msa1456810-mRNA-1
Gene Sequence

>Msa1456810

ATGGGTTGCAATATCATGAATTTCTCTACCACTTCTTCATCATCTTCTTTGAAGGGACTGTGCAGTCCAATTCCAAATAATAATCATAATCATAATCAGAAGAATAAGCTACAAAAAGCGCTTTCTTCATCTTCTTCATCTTCATTTTCACTTCGTTCTTCTTCTTCATCAAATGTCTTTCCTCTTCGTTCATCCTCTTCGCGACCCTTTTCTCATTCTTCTATGATTGTGAAAGCGGTGGCGAAGACGGAGGAGGAGCCACTTCATGTTATGATTTCCGGTGCACCTGCTTCTGGTAAAGGAACTCAATGTCACCTCATCACCAAGAAATGTGTCTTACCAGAATGTTTGGATCCCTTTCACATGGTGCAATTGCTGCAAGGCGGTTGGAGTTTAGACATAAACTTTGGACCTGGATCCAATGGCCTTGCAACCATTGCATCTTTTGTAGCCTTACAAAGGGATCCAAATTCCCAAATTCCTTACTATATTATTTTCTTGGCTTTGGGACAATACGGTTTGGTGCATGTTGCTGCTGGAGATTTACTTAGGGCGGAAATTGAAACCGGAAGTGAAAATGGAAAGCGTGCGAAAGAATATATGGAGAAGGGACAGTTGGTCCCTGATGAAATAGTTGTCATGATGGTCAAAGATCGTCTCTTGAAGCCAGATTCTGTAGAGAATGGTTGGCTTTTGGATGGATATCCCAGGAGCTTATCACAGGCTACTGCACTTAAGGAGTTAGGGTTTAAGCCTGATATTTTCATTCTTCTAGAGGTGTCTGAAGATATTCTTGTGGAGAGAGTAGTTGGAAGGAGATTAGATCCTGTTACTGGGAAGATATATCATTTGAAGTATTCTCCTCCAGAGACAAAAGAAATCGCGGATAGGCTCACCCAACGTTTTGATGATACTGAAGAGAAGGTAAAGTTGCGATTGAACACCCATCATCAAAATGTGGAGGCTGTCCTTTCCATGTATAAAGATATAACAATTAAGATTAATGGAAATTCCTCTCAGAAGGAAGTATTTGCTCAAATTGATGGTGCACTTACAACTCTTCTAGAGCAAAGGAAAGCTTCTTCAGAATCTATGGTAGCATAG

Protein sequence

>Msa1456810

MGCNIMNFSTTSSSSSLKGLCSPIPNNNHNHNQKNKLQKALSSSSSSSFSLRSSSSSNVFPLRSSSSRPFSHSSMIVKAVAKTEEEPLHVMISGAPASGKGTQCHLITKKCVLPECLDPFHMVQLLQGGWSLDINFGPGSNGLATIASFVALQRDPNSQIPYYIIFLALGQYGLVHVAAGDLLRAEIETGSENGKRAKEYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILLEVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQNVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA*