AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0596100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0596100 MtrunA17_Chr4g0017231 91.234 308 2 4 1 285 1 306 0.0 549
Msa0596100 MtrunA17_Chr2g0305051 47.773 247 124 2 29 272 34 278 9.72e-69 223
Msa0596100 MtrunA17_Chr4g0057771 37.173 191 109 4 90 270 53 242 5.84e-36 129
Msa0596100 MtrunA17_Chr1g0181801 29.885 174 101 4 91 246 136 306 8.69e-17 79.3
Msa0596100 MtrunA17_Chr7g0263541 29.310 174 102 4 91 246 61 231 5.67e-16 75.9
Msa0596100 MtrunA17_Chr8g0337051 34.906 106 60 3 89 190 44 144 2.20e-15 73.2
Msa0596100 MtrunA17_Chr4g0018221 25.698 179 103 4 90 265 78 229 4.99e-12 64.3
Msa0596100 MtrunA17_Chr5g0428971 25.140 179 104 4 90 265 55 206 7.06e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0596100 AT5G47840.1 76.020 196 47 0 90 285 88 283 9.46e-109 317
Msa0596100 AT5G47840.2 70.408 196 44 1 90 285 88 269 7.34e-98 288
Msa0596100 AT5G35170.1 56.150 187 82 0 90 276 103 289 5.24e-70 227
Msa0596100 AT5G35170.2 56.150 187 82 0 90 276 103 289 5.85e-70 226
Msa0596100 AT5G63400.1 34.896 192 114 4 89 270 56 246 3.42e-33 122
Msa0596100 AT5G50370.1 33.333 165 101 3 89 245 57 220 2.12e-29 112
Msa0596100 AT5G50370.2 33.750 160 97 3 90 241 58 216 4.60e-28 108
Msa0596100 AT5G63400.2 38.235 136 79 2 89 220 56 190 1.21e-27 106
Msa0596100 AT2G37250.1 28.251 223 138 5 42 246 28 246 6.51e-19 84.7
Msa0596100 AT2G39270.1 31.395 172 101 3 91 246 89 259 1.10e-17 81.6
Msa0596100 AT5G26667.1 35.849 106 59 3 89 190 37 137 6.59e-16 75.1
Msa0596100 AT5G26667.3 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0596100 AT5G26667.2 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0596100 AT5G26667.4 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0596100 AT3G60180.1 25.806 217 121 5 52 265 17 196 2.16e-13 68.2
Msa0596100 AT3G60180.2 25.806 217 121 5 52 265 17 196 2.16e-13 68.2
Msa0596100 AT4G25280.1 31.304 115 76 2 90 203 77 189 7.74e-13 67.4
Msa0596100 AT4G25280.2 31.304 115 76 2 90 203 77 189 7.74e-13 67.4

Find 79 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTTCCTCCCTGTTAC+TGG 0.196331 4_2:-25657690 Msa0596100:three_prime_UTR
TTATGATTATGATTATTATT+TGG 0.225692 4_2:+25662775 None:intergenic
CAATAATGATATACAGAAAA+TGG 0.248233 4_2:+25657644 None:intergenic
GCTACTGCACTTAAGGAGTT+AGG 0.300266 4_2:-25660811 Msa0596100:CDS
AAAGGATATATAATATAATA+TGG 0.304977 4_2:-25662934 None:intergenic
ATTGAAACCGGAAGTGAAAA+TGG 0.306531 4_2:-25661061 Msa0596100:CDS
TGTAGAGAATGGTTGGCTTT+TGG 0.314777 4_2:-25660860 Msa0596100:CDS
GAAAGCTTCTTCAGAATCTA+TGG 0.334801 4_2:-25657942 Msa0596100:CDS
CGAGTCATAGTTTGTTGGTT+TGG 0.336884 4_2:-25657707 Msa0596100:three_prime_UTR
CCAAAGGAAATAAAAGAATA+AGG 0.336928 4_2:-25657601 Msa0596100:three_prime_UTR
GTATAAAGATATAACAATTA+AGG 0.337775 4_2:-25659391 Msa0596100:intron
GCATATGAACCACCAGTAAC+AGG 0.349980 4_2:+25657678 None:intergenic
TTATGATTATTATTTGGAAT+TGG 0.350423 4_2:+25662781 None:intergenic
ATTCTTGTGGAGAGAGTAGT+TGG 0.351960 4_2:-25659746 Msa0596100:CDS
TGATATATCTTCCCAGTAAC+AGG 0.355623 4_2:+25659710 None:intergenic
AGGAGATTAGATCCTGTTAC+TGG 0.364620 4_2:-25659722 Msa0596100:CDS
TCTAGAAGAATGAAAATATC+AGG 0.368176 4_2:+25660781 None:intergenic
GAAGTATTTGCTCAAATTGA+TGG 0.377927 4_2:-25657992 Msa0596100:CDS
ATCACAGGCTACTGCACTTA+AGG 0.378525 4_2:-25660818 Msa0596100:CDS
TTCTTCATCATCTTCTTTGA+AGG 0.383124 4_2:-25662815 Msa0596100:CDS
CAACCATTCTCTACAGAATC+TGG 0.393081 4_2:+25660868 None:intergenic
AAAGCGTGCGAAAGAATATA+TGG 0.409628 4_2:-25661038 Msa0596100:CDS
TTGCTGCTGGAGATTTACTT+AGG 0.410112 4_2:-25661090 Msa0596100:CDS
TTGATAGTACAAAGTTGTAT+TGG 0.411071 4_2:-25657782 Msa0596100:three_prime_UTR
CTACTGCACTTAAGGAGTTA+GGG 0.424190 4_2:-25660810 Msa0596100:CDS
ACCATGACAACTATTTCATC+AGG 0.443004 4_2:+25660998 None:intergenic
TACCATAGAAGAATGAGAAA+AGG 0.443165 4_2:+25662642 None:intergenic
TGCATATATGCAGTACGGTT+TGG 0.445973 4_2:-25661119 Msa0596100:intron
GGTTTGGTGCATGTTGCTGC+TGG 0.446456 4_2:-25661103 Msa0596100:CDS
GAATCAACAAAATTAATAAG+AGG 0.456579 4_2:-25662902 Msa0596100:five_prime_UTR
TTGTGGAGAGAGTAGTTGGA+AGG 0.459886 4_2:-25659742 Msa0596100:CDS
TTCAGTATCATCAAAACGTT+GGG 0.461597 4_2:+25659640 None:intergenic
AATTGTTATATCTTTATACA+TGG 0.470672 4_2:+25659395 None:intergenic
TGCTGCTGGAGATTTACTTA+GGG 0.479317 4_2:-25661089 Msa0596100:CDS
CTTAGGGCGGAAATTGAAAC+CGG 0.486128 4_2:-25661073 Msa0596100:CDS
AGTAGCCTGTGATAAGCTCC+TGG 0.491046 4_2:+25660828 None:intergenic
AAGCCAGATTCTGTAGAGAA+TGG 0.494738 4_2:-25660871 Msa0596100:CDS
ACCATAGAAGAATGAGAAAA+GGG 0.498183 4_2:+25662643 None:intergenic
TTATATCTTTATACATGGAA+AGG 0.508644 4_2:+25659400 None:intergenic
TCTTCATCATCTTCTTTGAA+GGG 0.513126 4_2:-25662814 Msa0596100:CDS
TGTGAAAGCGGTGGCGAAGA+CGG 0.516859 4_2:-25662544 Msa0596100:CDS
CAGATTCTGTAGAGAATGGT+TGG 0.520796 4_2:-25660867 Msa0596100:CDS
CTTCAGTATCATCAAAACGT+TGG 0.527352 4_2:+25659639 None:intergenic
CAAAGAAGATGATGAAGAAG+TGG 0.539826 4_2:+25662819 None:intergenic
TGGTTCCTCCCTGTTACTGG+TGG 0.548985 4_2:-25657687 Msa0596100:three_prime_UTR
TAATGGAAATTCCTCTCAGA+AGG 0.552468 4_2:-25658014 Msa0596100:CDS
AGCGGTGGCGAAGACGGAGG+AGG 0.552869 4_2:-25662538 Msa0596100:CDS
TGTAGCGAGTCATAGTTTGT+TGG 0.554883 4_2:-25657712 Msa0596100:three_prime_UTR
AATCAACAAAATTAATAAGA+GGG 0.556950 4_2:-25662901 Msa0596100:five_prime_UTR
AATTCGTAAAATAAACTATG+AGG 0.558111 4_2:+25657758 None:intergenic
TGCGAAAGAATATATGGAGA+AGG 0.559519 4_2:-25661032 Msa0596100:CDS
TCATTTGAGTGTGAAAATGA+AGG 0.563211 4_2:-25657736 Msa0596100:three_prime_UTR
TTATGTATTCGATTTGCCAA+AGG 0.568312 4_2:-25657617 Msa0596100:three_prime_UTR
TGCTGGAGATTTACTTAGGG+CGG 0.569705 4_2:-25661086 Msa0596100:CDS
TTACAACTCTTCTAGAGCAA+AGG 0.576098 4_2:-25657964 Msa0596100:CDS
AGCAAATACTTCCTTCTGAG+AGG 0.577991 4_2:+25658003 None:intergenic
TATGATTCAGATTGTGAAAG+CGG 0.579020 4_2:-25662556 Msa0596100:intron
ATTATAGTTTACCTTCAGCA+AGG 0.583358 4_2:+25657855 None:intergenic
ATATATGGAGAAGGGACAGT+TGG 0.586158 4_2:-25661023 Msa0596100:CDS
CCGGAAATCATAACATGAAG+TGG 0.589982 4_2:+25662513 None:intergenic
ATATCCCAGGAGCTTATCAC+AGG 0.594589 4_2:-25660833 Msa0596100:CDS
AGACAAAAGAAATCGCGGAT+AGG 0.596089 4_2:-25659667 Msa0596100:CDS
CCCTGATGAAATAGTTGTCA+TGG 0.597046 4_2:-25660999 Msa0596100:intron
ATACAGAAAATGGTAAAGAA+CGG 0.604015 4_2:+25657654 None:intergenic
GGAGATTAGATCCTGTTACT+GGG 0.607211 4_2:-25659721 Msa0596100:CDS
GCGAAAGAATATATGGAGAA+GGG 0.615803 4_2:-25661031 Msa0596100:CDS
CATATGAACCACCAGTAACA+GGG 0.623448 4_2:+25657679 None:intergenic
TTAACATGGTGCCTTGCTGA+AGG 0.631362 4_2:-25657866 Msa0596100:three_prime_UTR
TCCAGAGACAAAAGAAATCG+CGG 0.637052 4_2:-25659672 Msa0596100:CDS
GTAGCCTGTGATAAGCTCCT+GGG 0.640337 4_2:+25660829 None:intergenic
CACCCATCATCAAAATGTGG+AGG 0.641846 4_2:-25659427 Msa0596100:CDS
GATTCAGATTGTGAAAGCGG+TGG 0.642056 4_2:-25662553 Msa0596100:intron
GGTGTCTGAAGATATTCTTG+TGG 0.642880 4_2:-25659759 Msa0596100:CDS
ATGAGAAAAGGGTCGCGAAG+AGG 0.645968 4_2:+25662654 None:intergenic
CCATGACAACTATTTCATCA+GGG 0.657389 4_2:+25660999 None:intergenic
GAACACCCATCATCAAAATG+TGG 0.675841 4_2:-25659430 Msa0596100:CDS
GAAAGCGGTGGCGAAGACGG+AGG 0.684721 4_2:-25662541 Msa0596100:CDS
CGCGAAGAGGATGAACGAAG+AGG 0.691693 4_2:+25662667 None:intergenic
ATGAACCACCAGTAACAGGG+AGG 0.771471 4_2:+25657682 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTTATTTAT+TGG - chr4_2:25657893-25657912 Msa0596100:three_prime_UTR 0.0%
!! TTATGATTATGATTATTATT+TGG + chr4_2:25657732-25657751 None:intergenic 10.0%
!! TATTACATATATAGTTTAAA+GGG + chr4_2:25660570-25660589 None:intergenic 10.0%
!! AATCAACAAAATTAATAAGA+GGG - chr4_2:25657603-25657622 Msa0596100:three_prime_UTR 15.0%
!!! TTATGATTATTATTTGGAAT+TGG + chr4_2:25657726-25657745 None:intergenic 15.0%
!! AAAAAAAAAACTTACTTTCT+TGG + chr4_2:25658058-25658077 None:intergenic 15.0%
!! TTAAAAATAGTAGAAAAGTT+AGG + chr4_2:25658226-25658245 None:intergenic 15.0%
!!! AGGAAAGAAATTTTAATTAA+GGG + chr4_2:25658957-25658976 None:intergenic 15.0%
!! AATAATATAGTAAGGAATTT+GGG + chr4_2:25659280-25659299 None:intergenic 15.0%
!! AAATAATATAGTAAGGAATT+TGG + chr4_2:25659281-25659300 None:intergenic 15.0%
!!! GAATCAATTTTTTATTTCAA+TGG + chr4_2:25659362-25659381 None:intergenic 15.0%
!! ATATTTGAATATCAATTGTA+CGG + chr4_2:25659554-25659573 None:intergenic 15.0%
!!! TAACTCTTTTATTTAATAGA+TGG - chr4_2:25659593-25659612 Msa0596100:intron 15.0%
!!! ATAATGAAATATCGATATTT+TGG + chr4_2:25659913-25659932 None:intergenic 15.0%
!! AAAATATCGATATTTCATTA+TGG - chr4_2:25659912-25659931 Msa0596100:intron 15.0%
!! TATTCTTATTGAATAATATC+TGG - chr4_2:25660017-25660036 Msa0596100:intron 15.0%
!! TTAAAATAAAATTAAAGGTG+TGG - chr4_2:25660482-25660501 Msa0596100:intron 15.0%
!!! TAAAATAAAATTAAAGGTGT+GGG - chr4_2:25660483-25660502 Msa0596100:intron 15.0%
!! GTATTACATATATAGTTTAA+AGG + chr4_2:25660571-25660590 None:intergenic 15.0%
!! AATTGTTATATCTTTATACA+TGG + chr4_2:25661112-25661131 None:intergenic 15.0%
!! GTATAAAGATATAACAATTA+AGG - chr4_2:25661113-25661132 Msa0596100:intron 15.0%
!! TGAAGTGTATATTAAATAAT+TGG - chr4_2:25661269-25661288 Msa0596100:intron 15.0%
!!! TTTTTTTTAAAAGGAAGAAA+AGG + chr4_2:25661822-25661841 None:intergenic 15.0%
!! AATAATCAATTTCTATTTAG+TGG + chr4_2:25662196-25662215 None:intergenic 15.0%
!! GAATCAACAAAATTAATAAG+AGG - chr4_2:25657602-25657621 Msa0596100:three_prime_UTR 20.0%
!!! GAGGAAAGAAATTTTAATTA+AGG + chr4_2:25658958-25658977 None:intergenic 20.0%
!!! TCCTTACTATATTATTTTCT+TGG - chr4_2:25659284-25659303 Msa0596100:intron 20.0%
!!! TATATTATTTTCTTGGCTTT+GGG - chr4_2:25659291-25659310 Msa0596100:intron 20.0%
!! ACTAAATACAATTACATGTA+TGG - chr4_2:25660060-25660079 Msa0596100:intron 20.0%
!! GTTATGTTAAGGAATATATA+GGG + chr4_2:25660238-25660257 None:intergenic 20.0%
!! TGTTATGTTAAGGAATATAT+AGG + chr4_2:25660239-25660258 None:intergenic 20.0%
!! TTGTTAGAAAACAATATAAG+AGG + chr4_2:25660340-25660359 None:intergenic 20.0%
!!! TTATATTGTTTTCTAACAAG+AGG - chr4_2:25660341-25660360 Msa0596100:intron 20.0%
!!! AATTTACAGTTCAAATTTTC+AGG - chr4_2:25660724-25660743 Msa0596100:intron 20.0%
!! ATAGATTAGAGTTTCTAATA+GGG + chr4_2:25660902-25660921 None:intergenic 20.0%
!! TATAGATTAGAGTTTCTAAT+AGG + chr4_2:25660903-25660922 None:intergenic 20.0%
!!! TTATTGTTTGTTTTCAACTT+AGG - chr4_2:25661038-25661057 Msa0596100:CDS 20.0%
!! TTATATCTTTATACATGGAA+AGG + chr4_2:25661107-25661126 None:intergenic 20.0%
!! ACATATTAAATATTAGCAGT+TGG - chr4_2:25661742-25661761 Msa0596100:intron 20.0%
!!! CTGTGATGATTTTTTTTAAA+AGG + chr4_2:25661831-25661850 None:intergenic 20.0%
!! GCATATTCTTATAATGTTAT+AGG + chr4_2:25661961-25661980 None:intergenic 20.0%
!! TAGAAATTGATTATTTCACA+AGG - chr4_2:25662201-25662220 Msa0596100:intron 20.0%
!! AATTCGTAAAATAAACTATG+AGG + chr4_2:25662749-25662768 None:intergenic 20.0%
!! CAATAATGATATACAGAAAA+TGG + chr4_2:25662863-25662882 None:intergenic 20.0%
!!! CATTTTCTGTATATCATTAT+TGG - chr4_2:25662861-25662880 Msa0596100:exon 20.0%
! AGCATTTATCTATCTTAAAC+CGG + chr4_2:25658472-25658491 None:intergenic 25.0%
!!! TTACCCTGTTTTTTAACAAT+AGG - chr4_2:25658614-25658633 Msa0596100:intron 25.0%
! AAGCCTATTGTTAAAAAACA+GGG + chr4_2:25658620-25658639 None:intergenic 25.0%
! AAAGCCTATTGTTAAAAAAC+AGG + chr4_2:25658621-25658640 None:intergenic 25.0%
!!! AGATAATCATTTTGATCCAT+CGG - chr4_2:25658656-25658675 Msa0596100:intron 25.0%
! ATATAATGCGATATTCCATT+TGG + chr4_2:25659025-25659044 None:intergenic 25.0%
! GCCAAGAAAATAATATAGTA+AGG + chr4_2:25659288-25659307 None:intergenic 25.0%
!! CTATATTATTTTCTTGGCTT+TGG - chr4_2:25659290-25659309 Msa0596100:intron 25.0%
! TCTAGAAGAATGAAAATATC+AGG + chr4_2:25659726-25659745 None:intergenic 25.0%
!! TGATATTTTCATTCTTCTAG+AGG - chr4_2:25659725-25659744 Msa0596100:CDS 25.0%
! GTTATGACTATGATATAAAC+TGG - chr4_2:25659963-25659982 Msa0596100:intron 25.0%
! ATTGAATAATATCTGGAGAA+AGG - chr4_2:25660024-25660043 Msa0596100:intron 25.0%
! GTGGACAAAAATATTTATAG+CGG + chr4_2:25660316-25660335 None:intergenic 25.0%
!!! TTAAAATTGTTTCTACGAAG+TGG + chr4_2:25660466-25660485 None:intergenic 25.0%
! GTTGTTCATATAATTGATCA+AGG + chr4_2:25660593-25660612 None:intergenic 25.0%
!! TATTTCTGTAGTAAGACTAA+TGG + chr4_2:25660673-25660692 None:intergenic 25.0%
! AGTCTTACTACAGAAATAAA+AGG - chr4_2:25660675-25660694 Msa0596100:intron 25.0%
! GTCTTACTACAGAAATAAAA+GGG - chr4_2:25660676-25660695 Msa0596100:intron 25.0%
!! TGCATTTTCTGATAAAAGAA+TGG + chr4_2:25660942-25660961 None:intergenic 25.0%
! ATTTCTCAAATCTGTAGTAA+TGG + chr4_2:25661247-25661266 None:intergenic 25.0%
! ACAATAATGTGACATTTAGT+GGG + chr4_2:25661296-25661315 None:intergenic 25.0%
! TACAATAATGTGACATTTAG+TGG + chr4_2:25661297-25661316 None:intergenic 25.0%
! TATTTATGTTCCCAAAACTT+TGG - chr4_2:25661322-25661341 Msa0596100:intron 25.0%
!! TTTTCCATTACCAAAGTTTT+GGG + chr4_2:25661335-25661354 None:intergenic 25.0%
!! ATTTTCCATTACCAAAGTTT+TGG + chr4_2:25661336-25661355 None:intergenic 25.0%
!!! AACTTTGGTAATGGAAAATA+TGG - chr4_2:25661337-25661356 Msa0596100:intron 25.0%
! CAGTTCTTCATATCATTATA+AGG - chr4_2:25661980-25661999 Msa0596100:intron 25.0%
! CTTCATATCATTATAAGGTT+CGG - chr4_2:25661985-25662004 Msa0596100:intron 25.0%
! TTCATATCATTATAAGGTTC+GGG - chr4_2:25661986-25662005 Msa0596100:intron 25.0%
! TTATCAGAAAAAACCCTTTA+TGG + chr4_2:25662230-25662249 None:intergenic 25.0%
!!! TAAAGGGTTTTTTCTGATAA+TGG - chr4_2:25662230-25662249 Msa0596100:intron 25.0%
! AATGGTGATAGTAATAACTA+TGG - chr4_2:25662248-25662267 Msa0596100:intron 25.0%
! ATGGTGATAGTAATAACTAT+GGG - chr4_2:25662249-25662268 Msa0596100:intron 25.0%
! ATTATATGTTTACTGTGTCT+TGG + chr4_2:25662423-25662442 None:intergenic 25.0%
!!! TTTTGTTGTCTACAGATTAA+TGG - chr4_2:25662473-25662492 Msa0596100:intron 25.0%
!! TTGATAGTACAAAGTTGTAT+TGG - chr4_2:25662722-25662741 Msa0596100:CDS 25.0%
! ATACAGAAAATGGTAAAGAA+CGG + chr4_2:25662853-25662872 None:intergenic 25.0%
!!! CCTTATTCTTTTATTTCCTT+TGG + chr4_2:25662906-25662925 None:intergenic 25.0%
! CCAAAGGAAATAAAAGAATA+AGG - chr4_2:25662903-25662922 Msa0596100:five_prime_UTR 25.0%
AAGAGTAAGTGACGAAAAAA+TGG - chr4_2:25657638-25657657 Msa0596100:three_prime_UTR 30.0%
AGAGTAAGTGACGAAAAAAT+GGG - chr4_2:25657639-25657658 Msa0596100:three_prime_UTR 30.0%
TTCTTCATCATCTTCTTTGA+AGG - chr4_2:25657689-25657708 Msa0596100:three_prime_UTR 30.0%
TCTTCATCATCTTCTTTGAA+GGG - chr4_2:25657690-25657709 Msa0596100:three_prime_UTR 30.0%
ACCATAGAAGAATGAGAAAA+GGG + chr4_2:25657864-25657883 None:intergenic 30.0%
TACCATAGAAGAATGAGAAA+AGG + chr4_2:25657865-25657884 None:intergenic 30.0%
TATGATTCAGATTGTGAAAG+CGG - chr4_2:25657948-25657967 Msa0596100:CDS 30.0%
ATTAGCAGCATTAGCATAAT+AGG - chr4_2:25658358-25658377 Msa0596100:intron 30.0%
TCTTAAACCGGAAAATACTT+GGG + chr4_2:25658460-25658479 None:intergenic 30.0%
ATCTTAAACCGGAAAATACT+TGG + chr4_2:25658461-25658480 None:intergenic 30.0%
!! TTTAACAATAGGCTTTTTCC+AGG - chr4_2:25658625-25658644 Msa0596100:intron 30.0%
!! TTAACAATAGGCTTTTTCCA+GGG - chr4_2:25658626-25658645 Msa0596100:intron 30.0%
ATGATTATCTCAAATAACCC+TGG + chr4_2:25658646-25658665 None:intergenic 30.0%
!! GATAATCATTTTGATCCATC+GGG - chr4_2:25658657-25658676 Msa0596100:intron 30.0%
TCTTCATGTATAGTTCACAA+GGG + chr4_2:25658980-25658999 None:intergenic 30.0%
TGGAGTTTAGACATAAACTT+TGG - chr4_2:25659192-25659211 Msa0596100:intron 30.0%
!! ATCTTTTGTAGCCTTACAAA+GGG - chr4_2:25659245-25659264 Msa0596100:intron 30.0%
TAGTAAGGAATTTGGGAATT+TGG + chr4_2:25659273-25659292 None:intergenic 30.0%
!! TACTGATTCACTACTAGATA+AGG - chr4_2:25659320-25659339 Msa0596100:intron 30.0%
ATGAAATAGTTGTCATGGTA+TGG - chr4_2:25659510-25659529 Msa0596100:intron 30.0%
GATAAATTACAATGAAGCTG+AGG + chr4_2:25659796-25659815 None:intergenic 30.0%
TATTCCTAACTCTTACAGTT+TGG + chr4_2:25659991-25660010 None:intergenic 30.0%
AATACAGAGAATTCTGTACA+AGG - chr4_2:25660096-25660115 Msa0596100:intron 30.0%
CAAAAATATTTATAGCGGTC+AGG + chr4_2:25660311-25660330 None:intergenic 30.0%
AGAAAACAATATAAGAGGAG+TGG + chr4_2:25660335-25660354 None:intergenic 30.0%
TTCAGTATCATCAAAACGTT+GGG + chr4_2:25660867-25660886 None:intergenic 30.0%
!! TTTTGATGATACTGAAGAGA+AGG - chr4_2:25660871-25660890 Msa0596100:CDS 30.0%
TTTGCATATATGTAATCCCA+TGG + chr4_2:25660984-25661003 None:intergenic 30.0%
! AATATGGAGAGCGTAAAAAA+TGG - chr4_2:25661353-25661372 Msa0596100:intron 30.0%
!! GTAATCTTGTTTGTTGTTTG+TGG - chr4_2:25661460-25661479 Msa0596100:intron 30.0%
!! GCATTCATATCTTGTTGTTA+TGG - chr4_2:25661603-25661622 Msa0596100:intron 30.0%
ATCTCATCAGAACAAGTATT+TGG + chr4_2:25661770-25661789 None:intergenic 30.0%
GCAAATTCTTTCTTCATTAC+AGG + chr4_2:25662094-25662113 None:intergenic 30.0%
AAAATGTGACACTAAGAAAG+TGG - chr4_2:25662127-25662146 Msa0596100:intron 30.0%
TAATAAATCCATGTGACAAG+CGG + chr4_2:25662173-25662192 None:intergenic 30.0%
AATAACTATGGGAAGAAGAA+AGG - chr4_2:25662260-25662279 Msa0596100:intron 30.0%
AAGTCATACGATGTCAATTT+CGG - chr4_2:25662293-25662312 Msa0596100:intron 30.0%
! GAAGTATTTGCTCAAATTGA+TGG - chr4_2:25662512-25662531 Msa0596100:intron 30.0%
!!! TTTGTCGTTTTGATTTAGCA+TGG - chr4_2:25662603-25662622 Msa0596100:intron 30.0%
!!! GGTGTCTTTTTGATTTAACA+TGG - chr4_2:25662624-25662643 Msa0596100:intron 30.0%
ATTATAGTTTACCTTCAGCA+AGG + chr4_2:25662652-25662671 None:intergenic 30.0%
TCATTTGAGTGTGAAAATGA+AGG - chr4_2:25662768-25662787 Msa0596100:CDS 30.0%
! TTATGTATTCGATTTGCCAA+AGG - chr4_2:25662887-25662906 Msa0596100:five_prime_UTR 30.0%
CAAAGAAGATGATGAAGAAG+TGG + chr4_2:25657688-25657707 None:intergenic 35.0%
! ACCCTTTTCTCATTCTTCTA+TGG - chr4_2:25657860-25657879 Msa0596100:three_prime_UTR 35.0%
CCACTTCATGTTATGATTTC+CGG - chr4_2:25657991-25658010 Msa0596100:CDS 35.0%
!! AACTTACTTTCTTGGTGATG+AGG + chr4_2:25658050-25658069 None:intergenic 35.0%
AAAAGTTAGGTCATGAAGCA+CGG + chr4_2:25658213-25658232 None:intergenic 35.0%
ACTAGACTAGAGTAAGCATA+GGG + chr4_2:25658425-25658444 None:intergenic 35.0%
! TTGTTGTCATTTATCGACCA+TGG + chr4_2:25658518-25658537 None:intergenic 35.0%
TGGTCGATAAATGACAACAA+TGG - chr4_2:25658518-25658537 Msa0596100:intron 35.0%
GGTCGATAAATGACAACAAT+GGG - chr4_2:25658519-25658538 Msa0596100:intron 35.0%
! ACTCTTTTCTAACTCAACTC+TGG - chr4_2:25658799-25658818 Msa0596100:intron 35.0%
GTCTTCATGTATAGTTCACA+AGG + chr4_2:25658981-25659000 None:intergenic 35.0%
TTATATTCCTTTCCTCTCCT+CGG - chr4_2:25659039-25659058 Msa0596100:intron 35.0%
GTTGAACCAAATTTACCTAG+AGG - chr4_2:25659061-25659080 Msa0596100:intron 35.0%
AAGCATCCTCTAGGTAAATT+TGG + chr4_2:25659070-25659089 None:intergenic 35.0%
AAATTTACCTAGAGGATGCT+TGG - chr4_2:25659069-25659088 Msa0596100:intron 35.0%
AATTTACCTAGAGGATGCTT+GGG - chr4_2:25659070-25659089 Msa0596100:intron 35.0%
TTAGACATAAACTTTGGACC+TGG - chr4_2:25659198-25659217 Msa0596100:intron 35.0%
TAAGGCTACAAAAGATGCAA+TGG + chr4_2:25659241-25659260 None:intergenic 35.0%
!! CATCTTTTGTAGCCTTACAA+AGG - chr4_2:25659244-25659263 Msa0596100:intron 35.0%
TCAAGTGCATATATGCAGTA+CGG - chr4_2:25659380-25659399 Msa0596100:intron 35.0%
ATTGAAACCGGAAGTGAAAA+TGG - chr4_2:25659443-25659462 Msa0596100:CDS 35.0%
AAAGCGTGCGAAAGAATATA+TGG - chr4_2:25659466-25659485 Msa0596100:intron 35.0%
TGCGAAAGAATATATGGAGA+AGG - chr4_2:25659472-25659491 Msa0596100:intron 35.0%
GCGAAAGAATATATGGAGAA+GGG - chr4_2:25659473-25659492 Msa0596100:intron 35.0%
CCATGACAACTATTTCATCA+GGG + chr4_2:25659508-25659527 None:intergenic 35.0%
ACCATGACAACTATTTCATC+AGG + chr4_2:25659509-25659528 None:intergenic 35.0%
AATAGTTGTCATGGTATGGT+AGG - chr4_2:25659514-25659533 Msa0596100:intron 35.0%
ATAGTTGTCATGGTATGGTA+GGG - chr4_2:25659515-25659534 Msa0596100:intron 35.0%
GAATTCTGTACAAGGTGATA+CGG - chr4_2:25660104-25660123 Msa0596100:intron 35.0%
AATTCTGTACAAGGTGATAC+GGG - chr4_2:25660105-25660124 Msa0596100:intron 35.0%
!! TTACGGAAGGGAAGTATTTA+GGG + chr4_2:25660174-25660193 None:intergenic 35.0%
GAATATATAGGGAAAGACAG+GGG + chr4_2:25660227-25660246 None:intergenic 35.0%
GGAATATATAGGGAAAGACA+GGG + chr4_2:25660228-25660247 None:intergenic 35.0%
AGGAATATATAGGGAAAGAC+AGG + chr4_2:25660229-25660248 None:intergenic 35.0%
AGTTACAGCGTGTTATGTTA+AGG + chr4_2:25660249-25660268 None:intergenic 35.0%
TGATATATCTTCCCAGTAAC+AGG + chr4_2:25660797-25660816 None:intergenic 35.0%
CTTCAGTATCATCAAAACGT+TGG + chr4_2:25660868-25660887 None:intergenic 35.0%
! CAAATCTGTAGTAATGGAGA+GGG + chr4_2:25661241-25661260 None:intergenic 35.0%
! TCAAATCTGTAGTAATGGAG+AGG + chr4_2:25661242-25661261 None:intergenic 35.0%
TGTTCCCAAAACTTTGGTAA+TGG - chr4_2:25661328-25661347 Msa0596100:intron 35.0%
TACTGATAGACATGGTTGAT+TGG + chr4_2:25661511-25661530 None:intergenic 35.0%
GCATACAATACTGATAGACA+TGG + chr4_2:25661519-25661538 None:intergenic 35.0%
AGTATTGTATGCTACCAATG+TGG - chr4_2:25661527-25661546 Msa0596100:intron 35.0%
TGTTATGGATAAGATGCCAA+CGG - chr4_2:25661618-25661637 Msa0596100:intron 35.0%
TCATAGTGTAAGCAAAACGA+GGG - chr4_2:25661661-25661680 Msa0596100:intron 35.0%
!! GAGAAGTGTCTTATTGTGAT+AGG - chr4_2:25661717-25661736 Msa0596100:intron 35.0%
GTGTGAGGAAAAATGATTGA+GGG - chr4_2:25661880-25661899 Msa0596100:intron 35.0%
AGGAAAAATGATTGAGGGAT+GGG - chr4_2:25661885-25661904 Msa0596100:intron 35.0%
TGATAAATAGGCTGAAACAC+TGG - chr4_2:25661908-25661927 Msa0596100:intron 35.0%
TCAGAAAAAACCCTTTATGG+TGG + chr4_2:25662227-25662246 None:intergenic 35.0%
AGTCATACGATGTCAATTTC+GGG - chr4_2:25662294-25662313 Msa0596100:intron 35.0%
TAATGGAAATTCCTCTCAGA+AGG - chr4_2:25662490-25662509 Msa0596100:intron 35.0%
!! TTACAACTCTTCTAGAGCAA+AGG - chr4_2:25662540-25662559 Msa0596100:CDS 35.0%
GAAAGCTTCTTCAGAATCTA+TGG - chr4_2:25662562-25662581 Msa0596100:intron 35.0%
CCGGAAATCATAACATGAAG+TGG + chr4_2:25657994-25658013 None:intergenic 40.0%
CAATTTGAGCCTATGAAGCA+TGG - chr4_2:25658096-25658115 Msa0596100:intron 40.0%
TATGAAGCATGGATGTTCCT+CGG - chr4_2:25658107-25658126 Msa0596100:intron 40.0%
ATGAAGCACGGATAAAGACA+CGG + chr4_2:25658201-25658220 None:intergenic 40.0%
CACTAGACTAGAGTAAGCAT+AGG + chr4_2:25658426-25658445 None:intergenic 40.0%
ACTCTAGTCTAGTGTGCTAA+AGG - chr4_2:25658432-25658451 Msa0596100:intron 40.0%
!!! AAAGGCACCCAAGTATTTTC+CGG - chr4_2:25658450-25658469 Msa0596100:intron 40.0%
ATGCTTACTCTAATCTGCCA+TGG - chr4_2:25658487-25658506 Msa0596100:intron 40.0%
! TTGTCATTTATCGACCATGG+TGG + chr4_2:25658515-25658534 None:intergenic 40.0%
GCGTACAATACACCAATTGT+GGG + chr4_2:25658590-25658609 None:intergenic 40.0%
TGCGTACAATACACCAATTG+TGG + chr4_2:25658591-25658610 None:intergenic 40.0%
!! AATCATTTTGATCCATCGGG+TGG - chr4_2:25658660-25658679 Msa0596100:intron 40.0%
!! ATCATTTTGATCCATCGGGT+GGG - chr4_2:25658661-25658680 Msa0596100:intron 40.0%
! ACAAATCCCCCAATTTTGGA+GGG + chr4_2:25658828-25658847 None:intergenic 40.0%
! TACAAATCCCCCAATTTTGG+AGG + chr4_2:25658829-25658848 None:intergenic 40.0%
TCCAAAATTGGGGGATTTGT+AGG - chr4_2:25658828-25658847 Msa0596100:intron 40.0%
CCAAAATTGGGGGATTTGTA+GGG - chr4_2:25658829-25658848 Msa0596100:intron 40.0%
CAAAATTGGGGGATTTGTAG+GGG - chr4_2:25658830-25658849 Msa0596100:intron 40.0%
TCATGTATAGTTCACAAGGG+AGG + chr4_2:25658977-25658996 None:intergenic 40.0%
TATTCCATTTGGTCAAGAGG+AGG + chr4_2:25659014-25659033 None:intergenic 40.0%
CGATATTCCATTTGGTCAAG+AGG + chr4_2:25659017-25659036 None:intergenic 40.0%
! AGGTAAATTTGGTTCAACCG+AGG + chr4_2:25659059-25659078 None:intergenic 40.0%
ATTTACCTAGAGGATGCTTG+GGG - chr4_2:25659071-25659090 Msa0596100:intron 40.0%
GTGTGTCTTACCAGAATGTT+TGG - chr4_2:25659134-25659153 Msa0596100:intron 40.0%
TGAAAGGGATCCAAACATTC+TGG + chr4_2:25659147-25659166 None:intergenic 40.0%
ATGTTTGGATCCCTTTCACA+TGG - chr4_2:25659149-25659168 Msa0596100:intron 40.0%
AGCAATTGCACCATGTGAAA+GGG + chr4_2:25659162-25659181 None:intergenic 40.0%
CAAAAGATGCAATGGTTGCA+AGG + chr4_2:25659233-25659252 None:intergenic 40.0%
GGAATTTGGATCCCTTTGTA+AGG + chr4_2:25659259-25659278 None:intergenic 40.0%
TGCATATATGCAGTACGGTT+TGG - chr4_2:25659385-25659404 Msa0596100:intron 40.0%
TTGCTGCTGGAGATTTACTT+AGG - chr4_2:25659414-25659433 Msa0596100:CDS 40.0%
TGCTGCTGGAGATTTACTTA+GGG - chr4_2:25659415-25659434 Msa0596100:CDS 40.0%
! ACGCTTTCCATTTTCACTTC+CGG + chr4_2:25659453-25659472 None:intergenic 40.0%
ATATATGGAGAAGGGACAGT+TGG - chr4_2:25659481-25659500 Msa0596100:intron 40.0%
CCCTGATGAAATAGTTGTCA+TGG - chr4_2:25659505-25659524 Msa0596100:intron 40.0%
TCATGGTATGGTAGGGTAAA+TGG - chr4_2:25659522-25659541 Msa0596100:intron 40.0%
AAGCCAGATTCTGTAGAGAA+TGG - chr4_2:25659633-25659652 Msa0596100:intron 40.0%
CAACCATTCTCTACAGAATC+TGG + chr4_2:25659639-25659658 None:intergenic 40.0%
CAGATTCTGTAGAGAATGGT+TGG - chr4_2:25659637-25659656 Msa0596100:CDS 40.0%
!!! TGTAGAGAATGGTTGGCTTT+TGG - chr4_2:25659644-25659663 Msa0596100:CDS 40.0%
CTACTGCACTTAAGGAGTTA+GGG - chr4_2:25659694-25659713 Msa0596100:CDS 40.0%
! CTTCTAGAGGTAAACACTTG+TGG - chr4_2:25659738-25659757 Msa0596100:CDS 40.0%
!!! AGATGCAAGGTTTTGTTGAG+AGG + chr4_2:25659940-25659959 None:intergenic 40.0%
TCTCAACAAAACCTTGCATC+TGG - chr4_2:25659939-25659958 Msa0596100:intron 40.0%
TAGTCATAACTCCAGATGCA+AGG + chr4_2:25659953-25659972 None:intergenic 40.0%
GGTACCAAACTGTAAGAGTT+AGG - chr4_2:25659984-25660003 Msa0596100:intron 40.0%
AGGTCAAGCTCTCTAATACT+TGG + chr4_2:25660145-25660164 None:intergenic 40.0%
!! GTTACGGAAGGGAAGTATTT+AGG + chr4_2:25660175-25660194 None:intergenic 40.0%
!! TGGATGGTAATGGCTGTATA+GGG + chr4_2:25660380-25660399 None:intergenic 40.0%
!! TTGGATGGTAATGGCTGTAT+AGG + chr4_2:25660381-25660400 None:intergenic 40.0%
CCATTACCATCCAAGTGAAA+GGG - chr4_2:25660387-25660406 Msa0596100:intron 40.0%
CATTACCATCCAAGTGAAAG+GGG - chr4_2:25660388-25660407 Msa0596100:intron 40.0%
GTTTCTACGAAGTGGCAAAA+TGG + chr4_2:25660458-25660477 None:intergenic 40.0%
!! TAGCAGAATAGTGGACTCAT+TGG - chr4_2:25660512-25660531 Msa0596100:intron 40.0%
GGTGTCTGAAGATATTCTTG+TGG - chr4_2:25660745-25660764 Msa0596100:intron 40.0%
ATTCTTGTGGAGAGAGTAGT+TGG - chr4_2:25660758-25660777 Msa0596100:intron 40.0%
AGGAGATTAGATCCTGTTAC+TGG - chr4_2:25660782-25660801 Msa0596100:CDS 40.0%
GGAGATTAGATCCTGTTACT+GGG - chr4_2:25660783-25660802 Msa0596100:CDS 40.0%
TCCAGAGACAAAAGAAATCG+CGG - chr4_2:25660832-25660851 Msa0596100:CDS 40.0%
AGACAAAAGAAATCGCGGAT+AGG - chr4_2:25660837-25660856 Msa0596100:CDS 40.0%
GAACACCCATCATCAAAATG+TGG - chr4_2:25661074-25661093 Msa0596100:CDS 40.0%
!! AGCCTCCACATTTTGATGAT+GGG + chr4_2:25661082-25661101 None:intergenic 40.0%
ATACACGTGTCAACATGAGT+TGG - chr4_2:25661187-25661206 Msa0596100:intron 40.0%
TACACGTGTCAACATGAGTT+GGG - chr4_2:25661188-25661207 Msa0596100:intron 40.0%
AATGGAGACAGAAAATGGAG+AGG + chr4_2:25661216-25661235 None:intergenic 40.0%
GGGAAAATGGAGACAGAAAA+TGG + chr4_2:25661221-25661240 None:intergenic 40.0%
! GTAGTAATGGAGAGGGAAAA+TGG + chr4_2:25661234-25661253 None:intergenic 40.0%
GTATCCTTACAAGATGTGGA+CGG + chr4_2:25661393-25661412 None:intergenic 40.0%
AGACGTATCCTTACAAGATG+TGG + chr4_2:25661397-25661416 None:intergenic 40.0%
CTTGTAAGGATACGTCTATG+AGG - chr4_2:25661400-25661419 Msa0596100:intron 40.0%
GTCATAGTGTAAGCAAAACG+AGG - chr4_2:25661660-25661679 Msa0596100:intron 40.0%
AGCTAGAAAACCCTGATGAT+TGG - chr4_2:25661858-25661877 Msa0596100:intron 40.0%
TTTCCTCACACCAATCATCA+GGG + chr4_2:25661871-25661890 None:intergenic 40.0%
! TTTTCCTCACACCAATCATC+AGG + chr4_2:25661872-25661891 None:intergenic 40.0%
GGTGTGAGGAAAAATGATTG+AGG - chr4_2:25661879-25661898 Msa0596100:intron 40.0%
GAGGAAAAATGATTGAGGGA+TGG - chr4_2:25661884-25661903 Msa0596100:intron 40.0%
TTGAGGGATGGGTGATAAAT+AGG - chr4_2:25661896-25661915 Msa0596100:intron 40.0%
ATTTCACAAGGCCACCATAA+AGG - chr4_2:25662213-25662232 Msa0596100:intron 40.0%
TTTCACAAGGCCACCATAAA+GGG - chr4_2:25662214-25662233 Msa0596100:intron 40.0%
GTCATACGATGTCAATTTCG+GGG - chr4_2:25662295-25662314 Msa0596100:intron 40.0%
AGCAAATACTTCCTTCTGAG+AGG + chr4_2:25662504-25662523 None:intergenic 40.0%
! TGTAGCGAGTCATAGTTTGT+TGG - chr4_2:25662792-25662811 Msa0596100:CDS 40.0%
!! CGAGTCATAGTTTGTTGGTT+TGG - chr4_2:25662797-25662816 Msa0596100:CDS 40.0%
CATATGAACCACCAGTAACA+GGG + chr4_2:25662828-25662847 None:intergenic 40.0%
GATTCAGATTGTGAAAGCGG+TGG - chr4_2:25657951-25657970 Msa0596100:CDS 45.0%
TGAGTTCCTTTACCAGAAGC+AGG + chr4_2:25658021-25658040 None:intergenic 45.0%
GAGGAACATCCATGCTTCAT+AGG + chr4_2:25658108-25658127 None:intergenic 45.0%
ATTAGACATGTGTCCGACAC+CGG + chr4_2:25658145-25658164 None:intergenic 45.0%
AGTAAAGGTCCCGCATACAT+AGG - chr4_2:25658550-25658569 Msa0596100:intron 45.0%
GTAAAGGTCCCGCATACATA+GGG - chr4_2:25658551-25658570 Msa0596100:intron 45.0%
!! TCATTTTGATCCATCGGGTG+GGG - chr4_2:25658662-25658681 Msa0596100:intron 45.0%
GGGTTGTGTTGGACTAAGTT+TGG - chr4_2:25658692-25658711 Msa0596100:intron 45.0%
TTTGCCTGTCACATAGTGTC+TGG - chr4_2:25658733-25658752 Msa0596100:intron 45.0%
! TCTGGCTTCCCTCCAAAATT+GGG - chr4_2:25658817-25658836 Msa0596100:intron 45.0%
! CCCTACAAATCCCCCAATTT+TGG + chr4_2:25658832-25658851 None:intergenic 45.0%
! AATTTGGTTCAACCGAGGAG+AGG + chr4_2:25659054-25659073 None:intergenic 45.0%
GTAAGACACACTACGAGTTC+GGG + chr4_2:25659125-25659144 None:intergenic 45.0%
GGTAAGACACACTACGAGTT+CGG + chr4_2:25659126-25659145 None:intergenic 45.0%
CAGCAATTGCACCATGTGAA+AGG + chr4_2:25659163-25659182 None:intergenic 45.0%
AACTTTGGACCTGGATCCAA+TGG - chr4_2:25659207-25659226 Msa0596100:intron 45.0%
TGCTGGAGATTTACTTAGGG+CGG - chr4_2:25659418-25659437 Msa0596100:CDS 45.0%
CTTAGGGCGGAAATTGAAAC+CGG - chr4_2:25659431-25659450 Msa0596100:CDS 45.0%
!!! GAGAATGGTTGGCTTTTGGA+TGG - chr4_2:25659648-25659667 Msa0596100:CDS 45.0%
ATATCCCAGGAGCTTATCAC+AGG - chr4_2:25659671-25659690 Msa0596100:CDS 45.0%
ATCACAGGCTACTGCACTTA+AGG - chr4_2:25659686-25659705 Msa0596100:CDS 45.0%
GCTACTGCACTTAAGGAGTT+AGG - chr4_2:25659693-25659712 Msa0596100:CDS 45.0%
AAGGTGATACGGGTTTCACT+TGG - chr4_2:25660115-25660134 Msa0596100:intron 45.0%
!! GGAAGGGAAGTATTTAGGGA+GGG + chr4_2:25660170-25660189 None:intergenic 45.0%
GTGTTTAGGTGGTTACGGAA+GGG + chr4_2:25660186-25660205 None:intergenic 45.0%
AGTGTTTAGGTGGTTACGGA+AGG + chr4_2:25660187-25660206 None:intergenic 45.0%
!! GGGAAGTGTTTAGGTGGTTA+CGG + chr4_2:25660191-25660210 None:intergenic 45.0%
!! GTTACTGGGAAGTGTTTAGG+TGG + chr4_2:25660197-25660216 None:intergenic 45.0%
!! GTGGTTACTGGGAAGTGTTT+AGG + chr4_2:25660200-25660219 None:intergenic 45.0%
ACAGGGGAAAAGTGGTTACT+GGG + chr4_2:25660211-25660230 None:intergenic 45.0%
GCCATTACCATCCAAGTGAA+AGG - chr4_2:25660386-25660405 Msa0596100:intron 45.0%
CCCTTTCACTTGGATGGTAA+TGG + chr4_2:25660390-25660409 None:intergenic 45.0%
GGGATGATGTAGCAGAATAG+TGG - chr4_2:25660503-25660522 Msa0596100:intron 45.0%
TGTTGTGACCTTGCAGTTGA+AGG - chr4_2:25660618-25660637 Msa0596100:intron 45.0%
TAGTGTCTCCTTCAACTGCA+AGG + chr4_2:25660629-25660648 None:intergenic 45.0%
TTGTGGAGAGAGTAGTTGGA+AGG - chr4_2:25660762-25660781 Msa0596100:intron 45.0%
! GCGATTTCTTTTGTCTCTGG+AGG + chr4_2:25660833-25660852 None:intergenic 45.0%
! TCCGCGATTTCTTTTGTCTC+TGG + chr4_2:25660836-25660855 None:intergenic 45.0%
ATGCTCTCTGTTGACAACCA+TGG - chr4_2:25660964-25660983 Msa0596100:intron 45.0%
TGCTCTCTGTTGACAACCAT+GGG - chr4_2:25660965-25660984 Msa0596100:intron 45.0%
CACCCATCATCAAAATGTGG+AGG - chr4_2:25661077-25661096 Msa0596100:CDS 45.0%
!! CAGCCTCCACATTTTGATGA+TGG + chr4_2:25661083-25661102 None:intergenic 45.0%
! GGAGAGCGTAAAAAATGGAG+AGG - chr4_2:25661358-25661377 Msa0596100:intron 45.0%
AACTCCGTCCACATCTTGTA+AGG - chr4_2:25661386-25661405 Msa0596100:intron 45.0%
!! AAGGATTGGCTACTCCACAT+TGG + chr4_2:25661544-25661563 None:intergenic 45.0%
TCTACTGCGGTAACAAGGAT+TGG + chr4_2:25661558-25661577 None:intergenic 45.0%
CATGGGTATGCACACTGTAA+GGG - chr4_2:25661581-25661600 Msa0596100:intron 45.0%
GGTAAACACACACACATCAG+TGG - chr4_2:25661682-25661701 Msa0596100:intron 45.0%
AAACCCTGATGATTGGTGTG+AGG - chr4_2:25661865-25661884 Msa0596100:intron 45.0%
CATGCACTCGAAACACTATC+TGG - chr4_2:25662336-25662355 Msa0596100:intron 45.0%
TGTCTTGGCTATGCATTAGC+AGG + chr4_2:25662408-25662427 None:intergenic 45.0%
TTAACATGGTGCCTTGCTGA+AGG - chr4_2:25662638-25662657 Msa0596100:intron 45.0%
GCATATGAACCACCAGTAAC+AGG + chr4_2:25662829-25662848 None:intergenic 45.0%
!!! CAATTTTAAAATAAAATTAA+AGG - chr4_2:25660477-25660496 Msa0596100:intron 5.0%
ATGAGAAAAGGGTCGCGAAG+AGG + chr4_2:25657853-25657872 None:intergenic 50.0%
TTTACCAGAAGCAGGTGCAC+CGG + chr4_2:25658013-25658032 None:intergenic 50.0%
GCATGGATGTTCCTCGGATT+AGG - chr4_2:25658113-25658132 Msa0596100:intron 50.0%
TTAGACATGTGTCCGACACC+GGG + chr4_2:25658144-25658163 None:intergenic 50.0%
CACGGATAAAGACACGGACA+CGG + chr4_2:25658195-25658214 None:intergenic 50.0%
TTCCCAGACCCTATGTATGC+GGG + chr4_2:25658562-25658581 None:intergenic 50.0%
CTTCCCAGACCCTATGTATG+CGG + chr4_2:25658563-25658582 None:intergenic 50.0%
GCATACATAGGGTCTGGGAA+GGG - chr4_2:25658562-25658581 Msa0596100:intron 50.0%
CATACATAGGGTCTGGGAAG+GGG - chr4_2:25658563-25658582 Msa0596100:intron 50.0%
CTGTCACATAGTGTCTGGCT+GGG - chr4_2:25658738-25658757 Msa0596100:intron 50.0%
TGTCACATAGTGTCTGGCTG+GGG - chr4_2:25658739-25658758 Msa0596100:intron 50.0%
TAGTGTCTGGCTGGGGAAAA+TGG - chr4_2:25658746-25658765 Msa0596100:intron 50.0%
GGAAAATGGAGTGGACGGAA+GGG - chr4_2:25658760-25658779 Msa0596100:intron 50.0%
! CTCTGGCTTCCCTCCAAAAT+TGG - chr4_2:25658816-25658835 Msa0596100:intron 50.0%
CTGGCTTCCCTCCAAAATTG+GGG - chr4_2:25658818-25658837 Msa0596100:intron 50.0%
TGGCTTCCCTCCAAAATTGG+GGG - chr4_2:25658819-25658838 Msa0596100:intron 50.0%
TTCGCCTCCTCTTGACCAAA+TGG - chr4_2:25659007-25659026 Msa0596100:intron 50.0%
CACATGGTGCAATTGCTGCA+AGG - chr4_2:25659165-25659184 Msa0596100:intron 50.0%
ATGGTGCAATTGCTGCAAGG+CGG - chr4_2:25659168-25659187 Msa0596100:intron 50.0%
TGCAATGGTTGCAAGGCCAT+TGG + chr4_2:25659226-25659245 None:intergenic 50.0%
! GGCTTTTGGATGGATATCCC+AGG - chr4_2:25659658-25659677 Msa0596100:CDS 50.0%
GTAGCCTGTGATAAGCTCCT+GGG + chr4_2:25659678-25659697 None:intergenic 50.0%
AGTAGCCTGTGATAAGCTCC+TGG + chr4_2:25659679-25659698 None:intergenic 50.0%
!! GGAAGTATTTAGGGAGGGAG+AGG + chr4_2:25660165-25660184 None:intergenic 50.0%
!! CGGAAGGGAAGTATTTAGGG+AGG + chr4_2:25660171-25660190 None:intergenic 50.0%
GACAGGGGAAAAGTGGTTAC+TGG + chr4_2:25660212-25660231 None:intergenic 50.0%
AGGGAAAGACAGGGGAAAAG+TGG + chr4_2:25660219-25660238 None:intergenic 50.0%
CAATGCATGCCCCTTTCACT+TGG + chr4_2:25660400-25660419 None:intergenic 50.0%
ATAGGCTGAAACACTGGCAG+TGG - chr4_2:25661914-25661933 Msa0596100:intron 50.0%
AGATGACACCGCTTGTCACA+TGG - chr4_2:25662162-25662181 Msa0596100:intron 50.0%
! GTTTGGTTCCTCCCTGTTAC+TGG - chr4_2:25662814-25662833 Msa0596100:CDS 50.0%
ATGAACCACCAGTAACAGGG+AGG + chr4_2:25662825-25662844 None:intergenic 50.0%
CGCGAAGAGGATGAACGAAG+AGG + chr4_2:25657840-25657859 None:intergenic 55.0%
TGTGAAAGCGGTGGCGAAGA+CGG - chr4_2:25657960-25657979 Msa0596100:CDS 55.0%
ATTTCCGGTGCACCTGCTTC+TGG - chr4_2:25658006-25658025 Msa0596100:CDS 55.0%
GGTGCACCTGCTTCTGGTAA+AGG - chr4_2:25658012-25658031 Msa0596100:CDS 55.0%
! TCCTCGGATTAGGCATGTCC+CGG - chr4_2:25658123-25658142 Msa0596100:intron 55.0%
GATTAGGCATGTCCCGGTGT+CGG - chr4_2:25658129-25658148 Msa0596100:intron 55.0%
CAATGGGCCCAGTGCAGTAA+AGG - chr4_2:25658535-25658554 Msa0596100:intron 55.0%
TGCGGGACCTTTACTGCACT+GGG + chr4_2:25658545-25658564 None:intergenic 55.0%
ATGCGGGACCTTTACTGCAC+TGG + chr4_2:25658546-25658565 None:intergenic 55.0%
GTCCCGCATACATAGGGTCT+GGG - chr4_2:25658557-25658576 Msa0596100:intron 55.0%
CGCATACATAGGGTCTGGGA+AGG - chr4_2:25658561-25658580 Msa0596100:intron 55.0%
TTTGATCCATCGGGTGGGGT+AGG - chr4_2:25658666-25658685 Msa0596100:intron 55.0%
CCAGCCAGACACTATGTGAC+AGG + chr4_2:25658740-25658759 None:intergenic 55.0%
CCTGTCACATAGTGTCTGGC+TGG - chr4_2:25658737-25658756 Msa0596100:intron 55.0%
TCTGGCTGGGGAAAATGGAG+TGG - chr4_2:25658751-25658770 Msa0596100:intron 55.0%
GCTGGGGAAAATGGAGTGGA+CGG - chr4_2:25658755-25658774 Msa0596100:intron 55.0%
GGGAAAATGGAGTGGACGGA+AGG - chr4_2:25658759-25658778 Msa0596100:intron 55.0%
AATGGAGTGGACGGAAGGGA+AGG - chr4_2:25658764-25658783 Msa0596100:intron 55.0%
ATGGAGTGGACGGAAGGGAA+GGG - chr4_2:25658765-25658784 Msa0596100:intron 55.0%
ACGGAAGGGAAGGGAAGAGA+GGG - chr4_2:25658774-25658793 Msa0596100:intron 55.0%
GGTTCAACCGAGGAGAGGAA+AGG + chr4_2:25659049-25659068 None:intergenic 55.0%
AGAGTCCCCAAGCATCCTCT+AGG + chr4_2:25659079-25659098 None:intergenic 55.0%
TGCAATTGCTGCAAGGCGGT+TGG - chr4_2:25659172-25659191 Msa0596100:intron 55.0%
GTTGCAAGGCCATTGGATCC+AGG + chr4_2:25659219-25659238 None:intergenic 55.0%
!! GGTTTGGTGCATGTTGCTGC+TGG - chr4_2:25659401-25659420 Msa0596100:CDS 55.0%
GCATGCCCCTTTCACTTGGA+TGG + chr4_2:25660396-25660415 None:intergenic 55.0%
TAAGGTTCGGGCTCGAGCAA+CGG - chr4_2:25661998-25662017 Msa0596100:intron 55.0%
TGGTTCCTCCCTGTTACTGG+TGG - chr4_2:25662817-25662836 Msa0596100:CDS 55.0%
ACCGGGACATGCCTAATCCG+AGG + chr4_2:25658127-25658146 None:intergenic 60.0%
AATCTGCCATGGCGCCACCA+TGG - chr4_2:25658498-25658517 Msa0596100:intron 60.0%
! TATCGACCATGGTGGCGCCA+TGG + chr4_2:25658507-25658526 None:intergenic 60.0%
GGTCCCGCATACATAGGGTC+TGG - chr4_2:25658556-25658575 Msa0596100:intron 60.0%
CTGGGAAGGGGTCCCACAAT+TGG - chr4_2:25658575-25658594 Msa0596100:intron 60.0%
ATCCATCGGGTGGGGTAGGT+AGG - chr4_2:25658670-25658689 Msa0596100:intron 60.0%
TCCATCGGGTGGGGTAGGTA+GGG - chr4_2:25658671-25658690 Msa0596100:intron 60.0%
GGGGTAGGTAGGGGTTGTGT+TGG - chr4_2:25658681-25658700 Msa0596100:intron 60.0%
GACGGAAGGGAAGGGAAGAG+AGG - chr4_2:25658773-25658792 Msa0596100:intron 60.0%
GTGTGCGTCAAACGAGCCGT+TGG + chr4_2:25661637-25661656 None:intergenic 60.0%
CGGCTCGTTTGACGCACACT+TGG - chr4_2:25661638-25661657 Msa0596100:intron 60.0%
AAGGTTCGGGCTCGAGCAAC+GGG - chr4_2:25661999-25662018 Msa0596100:intron 60.0%
GAAAGCGGTGGCGAAGACGG+AGG - chr4_2:25657963-25657982 Msa0596100:CDS 65.0%
CCATCGGGTGGGGTAGGTAG+GGG - chr4_2:25658672-25658691 Msa0596100:intron 65.0%
AGCGGTGGCGAAGACGGAGG+AGG - chr4_2:25657966-25657985 Msa0596100:CDS 70.0%
CCCCTACCTACCCCACCCGA+TGG + chr4_2:25658675-25658694 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 25657581 25662945 25657581 ID=Msa0596100;Name=Msa0596100
chr4_2 mRNA 25657581 25662945 25657581 ID=Msa0596100-mRNA-1;Parent=Msa0596100;Name=Msa0596100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=76|0.83|0.85|1|1|1|7|353|285
chr4_2 exon 25657581 25658038 25657581 ID=Msa0596100-mRNA-1:exon:6953;Parent=Msa0596100-mRNA-1
chr4_2 exon 25659392 25659466 25659392 ID=Msa0596100-mRNA-1:exon:6952;Parent=Msa0596100-mRNA-1
chr4_2 exon 25659634 25659780 25659634 ID=Msa0596100-mRNA-1:exon:6951;Parent=Msa0596100-mRNA-1
chr4_2 exon 25660780 25660914 25660780 ID=Msa0596100-mRNA-1:exon:6950;Parent=Msa0596100-mRNA-1
chr4_2 exon 25661000 25661128 25661000 ID=Msa0596100-mRNA-1:exon:6949;Parent=Msa0596100-mRNA-1
chr4_2 exon 25662527 25662568 25662527 ID=Msa0596100-mRNA-1:exon:6948;Parent=Msa0596100-mRNA-1
chr4_2 exon 25662645 25662945 25662645 ID=Msa0596100-mRNA-1:exon:6947;Parent=Msa0596100-mRNA-1
chr4_2 five_prime_UTR 25662870 25662945 25662870 ID=Msa0596100-mRNA-1:five_prime_utr;Parent=Msa0596100-mRNA-1
chr4_2 CDS 25662645 25662869 25662645 ID=Msa0596100-mRNA-1:cds;Parent=Msa0596100-mRNA-1
chr4_2 CDS 25662527 25662568 25662527 ID=Msa0596100-mRNA-1:cds;Parent=Msa0596100-mRNA-1
chr4_2 CDS 25661000 25661128 25661000 ID=Msa0596100-mRNA-1:cds;Parent=Msa0596100-mRNA-1
chr4_2 CDS 25660780 25660914 25660780 ID=Msa0596100-mRNA-1:cds;Parent=Msa0596100-mRNA-1
chr4_2 CDS 25659634 25659780 25659634 ID=Msa0596100-mRNA-1:cds;Parent=Msa0596100-mRNA-1
chr4_2 CDS 25659392 25659466 25659392 ID=Msa0596100-mRNA-1:cds;Parent=Msa0596100-mRNA-1
chr4_2 CDS 25657934 25658038 25657934 ID=Msa0596100-mRNA-1:cds;Parent=Msa0596100-mRNA-1
chr4_2 three_prime_UTR 25657581 25657933 25657581 ID=Msa0596100-mRNA-1:three_prime_utr;Parent=Msa0596100-mRNA-1
Gene Sequence

>Msa0596100

ATGGGTTGCAATATCATGAATTTCTCTACCACTTCTTCATCATCTTCTTTGAAGGGACTGTGCAGTCCAATTCCAAATAATAATCATAATCATAATCAGAAGAATAAGCTACAAAAAGCGCTTTCTTCATCTTCTTCATCTTCATTTTCACTTCGTTCTTCTTCTTCATCAAATGTCTTTCCTCTTCGTTCATCCTCTTCGCGACCCTTTTCTCATTCTTCTATGATTGTGAAAGCGGTGGCGAAGACGGAGGAGGAGCCACTTCATTACGGTTTGGTGCATGTTGCTGCTGGAGATTTACTTAGGGCGGAAATTGAAACCGGAAGTGAAAATGGAAAGCGTGCGAAAGAATATATGGAGAAGGGACAGTTGGTCCCTGATGAAATAGTTGTCATGATGGTCAAAGATCGTCTCTTGAAGCCAGATTCTGTAGAGAATGGTTGGCTTTTGGATGGATATCCCAGGAGCTTATCACAGGCTACTGCACTTAAGGAGTTAGGGTTTAAGCCTGATATTTTCATTCTTCTAGAGGTGTCTGAAGATATTCTTGTGGAGAGAGTAGTTGGAAGGAGATTAGATCCTGTTACTGGGAAGATATATCATTTGAAGTATTCTCCTCCAGAGACAAAAGAAATCGCGGATAGGCTCACCCAACGTTTTGATGATACTGAAGAGAAGGTAAAGTTGCGATTGAACACCCATCATCAAAATGTGGAGGCTGTCCTTTCCATGTATAAAGATATAACAATTAAGATTAATGGAAATTCCTCTCAGAAGGAAGTATTTGCTCAAATTGATGGTGCACTTACAACTCTTCTAGAGCAAAGGAAAGCTTCTTCAGAATCTATGGTAGCATAG

Protein sequence

>Msa0596100

MGCNIMNFSTTSSSSSLKGLCSPIPNNNHNHNQKNKLQKALSSSSSSSFSLRSSSSSNVFPLRSSSSRPFSHSSMIVKAVAKTEEEPLHYGLVHVAAGDLLRAEIETGSENGKRAKEYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILLEVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQNVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA*