Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701780 | XP_003629898.1 | 88.511 | 235 | 21 | 4 | 6 | 237 | 3 | 234 | 8.31e-133 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701780 | sp|F4I1G5|CRIM2_ARATH | 54.054 | 185 | 83 | 2 | 54 | 237 | 43 | 226 | 2.16e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701780 | G7L817 | 88.511 | 235 | 21 | 4 | 6 | 237 | 3 | 234 | 3.97e-133 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000310 | Msa0701780 | 0.824910 | 6.247033e-54 | -8.615850e-47 |
| Msa0616910 | Msa0701780 | 0.824115 | 9.614641e-54 | -8.615850e-47 |
| Msa0657880 | Msa0701780 | 0.855389 | 6.518824e-62 | -8.615850e-47 |
| Msa0701780 | Msa1204380 | 0.804866 | 1.758554e-49 | -8.615850e-47 |
| Msa0701780 | Msa1204390 | 0.813287 | 2.763086e-51 | -8.615850e-47 |
| Msa0701780 | Msa1259010 | 0.824226 | 9.051138e-54 | -8.615850e-47 |
| Msa0701780 | Msa1296600 | 0.819000 | 1.461470e-52 | -8.615850e-47 |
| Msa0701780 | Msa1329010 | 0.810016 | 1.421357e-50 | -8.615850e-47 |
| Msa0701780 | Msa1329020 | 0.806070 | 9.832912e-50 | -8.615850e-47 |
| Msa0701780 | Msa1330660 | 0.823248 | 1.534322e-53 | -8.615850e-47 |
| Msa0701780 | Msa1346920 | 0.805387 | 1.367848e-49 | -8.615850e-47 |
| Msa0701780 | Msa1419230 | 0.838927 | 2.150033e-57 | -8.615850e-47 |
| Msa0701780 | Msa1458280 | 0.953117 | 5.550284e-111 | -8.615850e-47 |
| Msa0368380 | Msa0701780 | 0.804008 | 2.654188e-49 | -8.615850e-47 |
| Msa0373110 | Msa0701780 | 0.821816 | 3.302109e-53 | -8.615850e-47 |
| Msa0467480 | Msa0701780 | 0.822171 | 2.732187e-53 | -8.615850e-47 |
| Msa0479740 | Msa0701780 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa0523360 | Msa0701780 | 0.828695 | 7.792669e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701780 | MtrunA17_Chr8g0380221 | 88.511 | 235 | 21 | 4 | 6 | 237 | 3 | 234 | 7.64e-137 | 384 |
| Msa0701780 | MtrunA17_Chr8g0374001 | 33.099 | 142 | 86 | 5 | 98 | 230 | 52 | 193 | 3.43e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701780 | AT1G29390.1 | 54.054 | 185 | 83 | 2 | 54 | 237 | 43 | 226 | 2.20e-63 | 197 |
| Msa0701780 | AT1G29390.2 | 54.545 | 176 | 70 | 2 | 72 | 237 | 8 | 183 | 7.43e-63 | 194 |
| Msa0701780 | AT1G29395.1 | 46.288 | 229 | 101 | 5 | 13 | 232 | 5 | 220 | 1.61e-61 | 192 |
| Msa0701780 | AT4G37220.1 | 32.653 | 147 | 90 | 5 | 93 | 230 | 45 | 191 | 1.16e-14 | 70.5 |
| Msa0701780 | AT3G50830.1 | 38.281 | 128 | 74 | 4 | 115 | 237 | 72 | 199 | 6.25e-14 | 68.6 |
Find 60 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTGATTGCGGTGTATT+TGG | 0.202554 | 4_4:+73257954 | Msa0701780:CDS |
| AATGGAACAATAAATGATTT+TGG | 0.211324 | 4_4:-73256456 | None:intergenic |
| GTCAGCATTCTTGGCACTTC+TGG | 0.222017 | 4_4:+73256730 | Msa0701780:CDS |
| GTTGGAATGTTGATATTATT+TGG | 0.278093 | 4_4:+73258144 | Msa0701780:three_prime_UTR |
| CGTCTCTTCTTTCATATTCC+AGG | 0.292869 | 4_4:+73256755 | Msa0701780:CDS |
| AAATCCGTTGGTGGTAGTTT+TGG | 0.300811 | 4_4:-73256181 | None:intergenic |
| GTAGAGATCCACTGAATATT+AGG | 0.308778 | 4_4:-73256243 | None:intergenic |
| CTCATGAGGCTGTGAGATTA+AGG | 0.311797 | 4_4:+73257810 | Msa0701780:CDS |
| ACCAAGAGTAACGCTATAAA+TGG | 0.318021 | 4_4:-73257776 | None:intergenic |
| CTGTTGTTCGGGTGCGGTTG+AGG | 0.353834 | 4_4:-73255962 | None:intergenic |
| TGGTGTGTGGTCAGCATTCT+TGG | 0.386108 | 4_4:+73256721 | Msa0701780:CDS |
| AGATCCTTCACTCGTCATTA+CGG | 0.405245 | 4_4:+73256138 | Msa0701780:intron |
| TATTATGTTTGATACTCAAT+TGG | 0.424445 | 4_4:+73258181 | Msa0701780:three_prime_UTR |
| GGGGCTTGCAAAGCAAATAA+TGG | 0.425620 | 4_4:-73256474 | None:intergenic |
| ATGATGATGGATCTGTTGTT+CGG | 0.439996 | 4_4:-73255974 | None:intergenic |
| TTAAATAATGGAGTTAGAAT+CGG | 0.451444 | 4_4:+73258219 | Msa0701780:three_prime_UTR |
| CCTGAGGCATAGGGGATTGA+AGG | 0.457606 | 4_4:-73256030 | None:intergenic |
| TTGTTGCTTCTCATCTGAGT+TGG | 0.458098 | 4_4:+73258072 | Msa0701780:exon |
| ATTAGGAGTAGTGAAAGGAT+AGG | 0.461661 | 4_4:-73256226 | None:intergenic |
| GAAAGGATAGGGAGCGTAAG+AGG | 0.461907 | 4_4:-73256214 | None:intergenic |
| TGGACATACAGAGGTAGATA+TGG | 0.467160 | 4_4:+73256701 | Msa0701780:intron |
| ACATTTCTCAAGAACAAGCT+TGG | 0.467961 | 4_4:+73257984 | Msa0701780:CDS |
| GCCATTTATAGCGTTACTCT+TGG | 0.480930 | 4_4:+73257775 | Msa0701780:CDS |
| CCTTCAATCCCCTATGCCTC+AGG | 0.483755 | 4_4:+73256030 | Msa0701780:CDS |
| TTCAATTGTTTCCACCTTAG+CGG | 0.484293 | 4_4:+73258026 | Msa0701780:CDS |
| TACCAGGTACCTGAGGCATA+GGG | 0.493016 | 4_4:-73256039 | None:intergenic |
| TGATGATGGATCTGTTGTTC+GGG | 0.494670 | 4_4:-73255973 | None:intergenic |
| TTAGGAGTAGTGAAAGGATA+GGG | 0.507367 | 4_4:-73256225 | None:intergenic |
| AAGGAGAGCGATGATGATGA+TGG | 0.522436 | 4_4:-73255987 | None:intergenic |
| ATGGATCTGTTGTTCGGGTG+CGG | 0.525574 | 4_4:-73255968 | None:intergenic |
| TGCATTTACAGTTGAAGTTG+AGG | 0.526115 | 4_4:-73255919 | None:intergenic |
| GTACCAGGTACCTGAGGCAT+AGG | 0.529583 | 4_4:-73256040 | None:intergenic |
| CGTGATTTCTTTATTGATTG+CGG | 0.531142 | 4_4:+73257945 | Msa0701780:CDS |
| GTTTCCACCTTAGCGGTCAT+CGG | 0.533114 | 4_4:+73258033 | Msa0701780:CDS |
| ATCAATGACGTACTTCATCC+AGG | 0.538570 | 4_4:-73256511 | None:intergenic |
| CGCAATCAATAAAGAAATCA+CGG | 0.554346 | 4_4:-73257944 | None:intergenic |
| TATTCCGTAATGACGAGTGA+AGG | 0.557475 | 4_4:-73256142 | None:intergenic |
| GCGAGTGCGAGGGTGAGAGA+AGG | 0.562288 | 4_4:-73256006 | None:intergenic |
| GGATTGAAGGTGCGAGTGCG+AGG | 0.574816 | 4_4:-73256017 | None:intergenic |
| TCACTACTCCTAATATTCAG+TGG | 0.580865 | 4_4:+73256235 | Msa0701780:CDS |
| GAACTCCACCTCTGACATGA+GGG | 0.584088 | 4_4:+73258316 | Msa0701780:three_prime_UTR |
| GATTGAAGGTGCGAGTGCGA+GGG | 0.588182 | 4_4:-73256016 | None:intergenic |
| TTTGCCAGGGACACAAAAGA+AGG | 0.594762 | 4_4:+73257919 | Msa0701780:intron |
| GATACCGATGACCGCTAAGG+TGG | 0.607165 | 4_4:-73258037 | None:intergenic |
| CTTAATCTCACAGCCTCATG+AGG | 0.615359 | 4_4:-73257809 | None:intergenic |
| AAGAACCCTCATGTCAGAGG+TGG | 0.617947 | 4_4:-73258321 | None:intergenic |
| GGAAAACACACGAAATCCGT+TGG | 0.618951 | 4_4:-73256193 | None:intergenic |
| GCAAAGAACCCTCATGTCAG+AGG | 0.621006 | 4_4:-73258324 | None:intergenic |
| TTGGAGAAATCATTTGACCA+AGG | 0.622670 | 4_4:+73258003 | Msa0701780:CDS |
| AAGTCCAAAACTACCACCAA+CGG | 0.628404 | 4_4:+73256177 | Msa0701780:CDS |
| CTGGAATATGAAAGAAGAGA+CGG | 0.630891 | 4_4:-73256754 | None:intergenic |
| AGAACTCCACCTCTGACATG+AGG | 0.635733 | 4_4:+73258315 | Msa0701780:three_prime_UTR |
| AGTGATACCGATGACCGCTA+AGG | 0.637419 | 4_4:-73258040 | None:intergenic |
| AAACACACGAAATCCGTTGG+TGG | 0.638061 | 4_4:-73256190 | None:intergenic |
| TGAATATTAGGAGTAGTGAA+AGG | 0.638291 | 4_4:-73256231 | None:intergenic |
| AACTCAGATGAGAAGCAACA+AGG | 0.646149 | 4_4:-73258070 | None:intergenic |
| AGGTGGAAACAATTGAACCT+TGG | 0.646271 | 4_4:-73258020 | None:intergenic |
| ACCAGGTACCTGAGGCATAG+GGG | 0.660783 | 4_4:-73256038 | None:intergenic |
| GGTGATTGTAGCTCCTCATG+AGG | 0.668319 | 4_4:+73257796 | Msa0701780:CDS |
| ACAGAGGTAGATATGGTGTG+TGG | 0.705598 | 4_4:+73256708 | Msa0701780:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTAGATCAATAAA+AGG | - | chr4_4:73256673-73256692 | None:intergenic | 10.0% |
| !!! | TATTCTTTTTGAATATTAAT+TGG | + | chr4_4:73257699-73257718 | Msa0701780:intron | 10.0% |
| !! | TAAATAAAAATAATACATGT+TGG | + | chr4_4:73258126-73258145 | Msa0701780:three_prime_UTR | 10.0% |
| !!! | TCTAATTATTTTACACAAAT+TGG | + | chr4_4:73256681-73256700 | Msa0701780:intron | 15.0% |
| !!! | AGAATATAATTATGGATTAT+TGG | - | chr4_4:73257272-73257291 | None:intergenic | 15.0% |
| !! | TAAACATGAGAATATAATTA+TGG | - | chr4_4:73257280-73257299 | None:intergenic | 15.0% |
| !!! | TTTTTTCTCATACAAAAATT+CGG | + | chr4_4:73257343-73257362 | Msa0701780:intron | 15.0% |
| !! | TGTAAACAAATTCTTAAAAT+TGG | + | chr4_4:73257369-73257388 | Msa0701780:intron | 15.0% |
| !! | TATTCAAAAAGAATAAAGAA+CGG | - | chr4_4:73257694-73257713 | None:intergenic | 15.0% |
| !! | AAAAAAGATAAAATTTCTTC+CGG | + | chr4_4:73257722-73257741 | Msa0701780:intron | 15.0% |
| !!! | CTTTTTACTTACTTAAATAA+TGG | + | chr4_4:73258207-73258226 | Msa0701780:three_prime_UTR | 15.0% |
| !! | TAATAATTAAATTGAGAGAG+AGG | - | chr4_4:73256288-73256307 | None:intergenic | 20.0% |
| !! | CTCTCTCAATTTAATTATTA+TGG | + | chr4_4:73256288-73256307 | Msa0701780:intron | 20.0% |
| !! | ATGAATATTCAAAATCTTGT+AGG | + | chr4_4:73256403-73256422 | Msa0701780:intron | 20.0% |
| !! | TGAATATTCAAAATCTTGTA+GGG | + | chr4_4:73256404-73256423 | Msa0701780:intron | 20.0% |
| !!! | AATGGAACAATAAATGATTT+TGG | - | chr4_4:73256459-73256478 | None:intergenic | 20.0% |
| !!! | GAGAAGATTTAGATTTTAAA+TGG | - | chr4_4:73257051-73257070 | None:intergenic | 20.0% |
| !! | TAAAATCTAAATCTTCTCAA+TGG | + | chr4_4:73257053-73257072 | Msa0701780:intron | 20.0% |
| !! | TATTGTTTACTTCTAACTAT+TGG | + | chr4_4:73257083-73257102 | Msa0701780:intron | 20.0% |
| !! | ATTTCTTAGAAAGAAATGTA+GGG | - | chr4_4:73257220-73257239 | None:intergenic | 20.0% |
| !! | AATTTCTTAGAAAGAAATGT+AGG | - | chr4_4:73257221-73257240 | None:intergenic | 20.0% |
| !! | TTTGTATGAGAAAAAATGTT+TGG | - | chr4_4:73257339-73257358 | None:intergenic | 20.0% |
| !! | CAAAATGAAAAGGAAATAAA+CGG | - | chr4_4:73257471-73257490 | None:intergenic | 20.0% |
| !! | TATTATGTTTGATACTCAAT+TGG | + | chr4_4:73258181-73258200 | Msa0701780:three_prime_UTR | 20.0% |
| !!! | TTAAATAATGGAGTTAGAAT+CGG | + | chr4_4:73258219-73258238 | Msa0701780:three_prime_UTR | 20.0% |
| ! | GAACAAGAAAACAAAATACA+AGG | - | chr4_4:73256537-73256556 | None:intergenic | 25.0% |
| ! | AAGAGAATAACACTTATTCT+TGG | - | chr4_4:73256630-73256649 | None:intergenic | 25.0% |
| ! | TGTATAAGAGAATATATACC+TGG | - | chr4_4:73256776-73256795 | None:intergenic | 25.0% |
| ! | ATGAAATTTAGGAATCTTGA+GGG | + | chr4_4:73256814-73256833 | Msa0701780:intron | 25.0% |
| !!! | GTTTTCACCACTTTTAATAA+AGG | - | chr4_4:73256880-73256899 | None:intergenic | 25.0% |
| !! | GAAAACCAACATTTTCTTTT+AGG | + | chr4_4:73256894-73256913 | Msa0701780:intron | 25.0% |
| !! | TTCCTTTTCATTTTGTACAA+TGG | + | chr4_4:73257476-73257495 | Msa0701780:intron | 25.0% |
| ! | ATCCATTGTACAAAATGAAA+AGG | - | chr4_4:73257481-73257500 | None:intergenic | 25.0% |
| ! | TCAATAGTAACACATAGTTT+GGG | - | chr4_4:73257512-73257531 | None:intergenic | 25.0% |
| ! | TGTGGAGTGTATTAATATAA+GGG | + | chr4_4:73257544-73257563 | Msa0701780:intron | 25.0% |
| ! | ATATTAATACACTCCACATA+TGG | - | chr4_4:73257622-73257641 | None:intergenic | 25.0% |
| ! | ATGTGGAGTGTATTAATATA+AGG | + | chr4_4:73257623-73257642 | Msa0701780:intron | 25.0% |
| ! | TGTGGAGTGTATTAATATAA+GGG | + | chr4_4:73257544-73257563 | Msa0701780:intron | 25.0% |
| !! | GTAAGCAAATTCATGTTTTT+GGG | + | chr4_4:73257832-73257851 | Msa0701780:intron | 25.0% |
| !!! | TAAGCAAATTCATGTTTTTG+GGG | + | chr4_4:73257833-73257852 | Msa0701780:intron | 25.0% |
| ! | GTTGGAATGTTGATATTATT+TGG | + | chr4_4:73258144-73258163 | Msa0701780:three_prime_UTR | 25.0% |
| AAAAGAGTAGATGAGAATGT+AGG | - | chr4_4:73256065-73256084 | None:intergenic | 30.0% | |
| ATCAGAGAGAGGAAATAAAA+AGG | - | chr4_4:73256092-73256111 | None:intergenic | 30.0% | |
| TGAATATTAGGAGTAGTGAA+AGG | - | chr4_4:73256234-73256253 | None:intergenic | 30.0% | |
| CATAAATGAAGAACGAAAGA+CGG | - | chr4_4:73256364-73256383 | None:intergenic | 30.0% | |
| !! | ATCTTGTAGGGTTTTAATAC+TGG | + | chr4_4:73256416-73256435 | Msa0701780:intron | 30.0% |
| CATGAAATTTAGGAATCTTG+AGG | + | chr4_4:73256813-73256832 | Msa0701780:intron | 30.0% | |
| TGAAATTTAGGAATCTTGAG+GGG | + | chr4_4:73256815-73256834 | Msa0701780:intron | 30.0% | |
| TAAATCTCAACAACACCATA+TGG | + | chr4_4:73256854-73256873 | Msa0701780:intron | 30.0% | |
| ! | CACTTTTAATAAAGGCCATA+TGG | - | chr4_4:73256872-73256891 | None:intergenic | 30.0% |
| CATATGGCCTTTATTAAAAG+TGG | + | chr4_4:73256870-73256889 | Msa0701780:intron | 30.0% | |
| AGGTTCCTAAAAGAAAATGT+TGG | - | chr4_4:73256902-73256921 | None:intergenic | 30.0% | |
| !! | ATTTTCTTTTAGGAACCTCA+GGG | + | chr4_4:73256904-73256923 | Msa0701780:intron | 30.0% |
| GAAAAGTAAAAACTGCAAAG+TGG | + | chr4_4:73256958-73256977 | Msa0701780:intron | 30.0% | |
| TGTAATGAGAAAACTTGTAC+AGG | - | chr4_4:73257139-73257158 | None:intergenic | 30.0% | |
| AATGAAAAGGAAATAAACGG+AGG | - | chr4_4:73257468-73257487 | None:intergenic | 30.0% | |
| ! | AACACATAGTTTGGGTATTT+TGG | - | chr4_4:73257504-73257523 | None:intergenic | 30.0% |
| GTCAATAGTAACACATAGTT+TGG | - | chr4_4:73257513-73257532 | None:intergenic | 30.0% | |
| ATATTAATACACTCCACAGT+TGG | - | chr4_4:73257542-73257561 | None:intergenic | 30.0% | |
| CTGTGGAGTGTATTAATATA+AGG | + | chr4_4:73257543-73257562 | Msa0701780:intron | 30.0% | |
| GTGGAGTGTATTAATATAAG+GGG | + | chr4_4:73257545-73257564 | Msa0701780:intron | 30.0% | |
| ! | GGTAAGCAAATTCATGTTTT+TGG | + | chr4_4:73257831-73257850 | Msa0701780:intron | 30.0% |
| ! | TAAATAGGGTAAGTTGACAA+CGG | - | chr4_4:73257867-73257886 | None:intergenic | 30.0% |
| CGCAATCAATAAAGAAATCA+CGG | - | chr4_4:73257947-73257966 | None:intergenic | 30.0% | |
| ! | CGTGATTTCTTTATTGATTG+CGG | + | chr4_4:73257945-73257964 | Msa0701780:CDS | 30.0% |
| ! | TTTATTGATTGCGGTGTATT+TGG | + | chr4_4:73257954-73257973 | Msa0701780:CDS | 30.0% |
| TCATCATCATCATCATCGTT+AGG | + | chr4_4:73255879-73255898 | Msa0701780:CDS | 35.0% | |
| CATCATCATCATCATCGTTA+GGG | + | chr4_4:73255880-73255899 | Msa0701780:CDS | 35.0% | |
| TGCATTTACAGTTGAAGTTG+AGG | - | chr4_4:73255922-73255941 | None:intergenic | 35.0% | |
| !! | ATGATGATGGATCTGTTGTT+CGG | - | chr4_4:73255977-73255996 | None:intergenic | 35.0% |
| TTAGGAGTAGTGAAAGGATA+GGG | - | chr4_4:73256228-73256247 | None:intergenic | 35.0% | |
| ATTAGGAGTAGTGAAAGGAT+AGG | - | chr4_4:73256229-73256248 | None:intergenic | 35.0% | |
| TCACTACTCCTAATATTCAG+TGG | + | chr4_4:73256235-73256254 | Msa0701780:CDS | 35.0% | |
| GTAGAGATCCACTGAATATT+AGG | - | chr4_4:73256246-73256265 | None:intergenic | 35.0% | |
| TCATCAGCACATAACAGATT+TGG | - | chr4_4:73256387-73256406 | None:intergenic | 35.0% | |
| !! | TAGGGTTTTAATACTGGCAA+AGG | + | chr4_4:73256422-73256441 | Msa0701780:intron | 35.0% |
| !! | AGGGTTTTAATACTGGCAAA+GGG | + | chr4_4:73256423-73256442 | Msa0701780:intron | 35.0% |
| TACACAAATTGGACATACAG+AGG | + | chr4_4:73256692-73256711 | Msa0701780:intron | 35.0% | |
| CTGGAATATGAAAGAAGAGA+CGG | - | chr4_4:73256757-73256776 | None:intergenic | 35.0% | |
| GAAATTTAGGAATCTTGAGG+GGG | + | chr4_4:73256816-73256835 | Msa0701780:intron | 35.0% | |
| !! | CATTTTCTTTTAGGAACCTC+AGG | + | chr4_4:73256903-73256922 | Msa0701780:intron | 35.0% |
| ! | TAGCATAAGCCTTTTATGCT+AGG | + | chr4_4:73256984-73257003 | Msa0701780:intron | 35.0% |
| ! | TCTACTCTCTTTTCCACAAT+AGG | + | chr4_4:73257187-73257206 | Msa0701780:intron | 35.0% |
| !!! | AGGAGTGTTTCAAGTGTTTT+AGG | - | chr4_4:73257410-73257429 | None:intergenic | 35.0% |
| TAAAACACTTGAAACACTCC+TGG | + | chr4_4:73257409-73257428 | Msa0701780:intron | 35.0% | |
| GTATTAATATAAGGGCAACC+CGG | + | chr4_4:73257552-73257571 | Msa0701780:intron | 35.0% | |
| TAATACACTCCACATATGGT+GGG | - | chr4_4:73257618-73257637 | None:intergenic | 35.0% | |
| TTAATACACTCCACATATGG+TGG | - | chr4_4:73257619-73257638 | None:intergenic | 35.0% | |
| ATTAATATAAGGGGCAACTG+TGG | + | chr4_4:73257634-73257653 | Msa0701780:intron | 35.0% | |
| ACCTGGAATCAAAGAATATC+CGG | - | chr4_4:73257744-73257763 | None:intergenic | 35.0% | |
| ACCAAGAGTAACGCTATAAA+TGG | - | chr4_4:73257779-73257798 | None:intergenic | 35.0% | |
| ACATTTCTCAAGAACAAGCT+TGG | + | chr4_4:73257984-73258003 | Msa0701780:CDS | 35.0% | |
| TTGGAGAAATCATTTGACCA+AGG | + | chr4_4:73258003-73258022 | Msa0701780:CDS | 35.0% | |
| TTCAATTGTTTCCACCTTAG+CGG | + | chr4_4:73258026-73258045 | Msa0701780:CDS | 35.0% | |
| !! | TGATGATGGATCTGTTGTTC+GGG | - | chr4_4:73255976-73255995 | None:intergenic | 40.0% |
| TAGATGAGAATGTAGGTACC+AGG | - | chr4_4:73256058-73256077 | None:intergenic | 40.0% | |
| ! | CTGATCGTGTTTCTGTTGTT+TGG | + | chr4_4:73256107-73256126 | Msa0701780:intron | 40.0% |
| AGATCCTTCACTCGTCATTA+CGG | + | chr4_4:73256138-73256157 | Msa0701780:intron | 40.0% | |
| TATTCCGTAATGACGAGTGA+AGG | - | chr4_4:73256145-73256164 | None:intergenic | 40.0% | |
| AAGTCCAAAACTACCACCAA+CGG | + | chr4_4:73256177-73256196 | Msa0701780:CDS | 40.0% | |
| !!! | AAATCCGTTGGTGGTAGTTT+TGG | - | chr4_4:73256184-73256203 | None:intergenic | 40.0% |
| ATCAATGACGTACTTCATCC+AGG | - | chr4_4:73256514-73256533 | None:intergenic | 40.0% | |
| TGGACATACAGAGGTAGATA+TGG | + | chr4_4:73256701-73256720 | Msa0701780:intron | 40.0% | |
| CGTCTCTTCTTTCATATTCC+AGG | + | chr4_4:73256755-73256774 | Msa0701780:CDS | 40.0% | |
| ! | ATAAGCCTTTTATGCTAGGC+AGG | + | chr4_4:73256988-73257007 | Msa0701780:intron | 40.0% |
| ! | TAAGCCTTTTATGCTAGGCA+GGG | + | chr4_4:73256989-73257008 | Msa0701780:intron | 40.0% |
| TAATCCCTGCCTAGCATAAA+AGG | - | chr4_4:73256996-73257015 | None:intergenic | 40.0% | |
| ! | AGTGAAAAGAGTGCATCAGA+TGG | - | chr4_4:73257112-73257131 | None:intergenic | 40.0% |
| TCCGGATATTCTTTGATTCC+AGG | + | chr4_4:73257740-73257759 | Msa0701780:intron | 40.0% | |
| GCCATTTATAGCGTTACTCT+TGG | + | chr4_4:73257775-73257794 | Msa0701780:CDS | 40.0% | |
| ! | GTAAGTTGACAACGGTTCAA+AGG | - | chr4_4:73257859-73257878 | None:intergenic | 40.0% |
| ACATCGTTATTCTCTTTGCC+AGG | + | chr4_4:73257905-73257924 | Msa0701780:intron | 40.0% | |
| CATCGTTATTCTCTTTGCCA+GGG | + | chr4_4:73257906-73257925 | Msa0701780:intron | 40.0% | |
| AGGTGGAAACAATTGAACCT+TGG | - | chr4_4:73258023-73258042 | None:intergenic | 40.0% | |
| AACTCAGATGAGAAGCAACA+AGG | - | chr4_4:73258073-73258092 | None:intergenic | 40.0% | |
| ! | TTGTTGCTTCTCATCTGAGT+TGG | + | chr4_4:73258072-73258091 | Msa0701780:exon | 40.0% |
| ! | AAGGAGAGCGATGATGATGA+TGG | - | chr4_4:73255990-73256009 | None:intergenic | 45.0% |
| ACAGAAACACGATCAGAGAG+AGG | - | chr4_4:73256103-73256122 | None:intergenic | 45.0% | |
| !!! | GGTGGTAGTTTTGGACTTGT+CGG | - | chr4_4:73256175-73256194 | None:intergenic | 45.0% |
| AAACACACGAAATCCGTTGG+TGG | - | chr4_4:73256193-73256212 | None:intergenic | 45.0% | |
| GGAAAACACACGAAATCCGT+TGG | - | chr4_4:73256196-73256215 | None:intergenic | 45.0% | |
| GGGGCTTGCAAAGCAAATAA+TGG | - | chr4_4:73256477-73256496 | None:intergenic | 45.0% | |
| TCCAGGAAAAAACAGCTGCA+GGG | - | chr4_4:73256497-73256516 | None:intergenic | 45.0% | |
| ATCCAGGAAAAAACAGCTGC+AGG | - | chr4_4:73256498-73256517 | None:intergenic | 45.0% | |
| ACAGAGGTAGATATGGTGTG+TGG | + | chr4_4:73256708-73256727 | Msa0701780:intron | 45.0% | |
| CGCATGAGCGCATGAAATTT+AGG | + | chr4_4:73256803-73256822 | Msa0701780:intron | 45.0% | |
| GAATCTTGAGGGGGTAACAA+TGG | + | chr4_4:73256825-73256844 | Msa0701780:intron | 45.0% | |
| TAGAATCAGTATGTGCCCTG+AGG | - | chr4_4:73256922-73256941 | None:intergenic | 45.0% | |
| TCAAGTGAGATGGATGAACC+AGG | - | chr4_4:73257430-73257449 | None:intergenic | 45.0% | |
| TCCATCTCACTTGATTCCCA+TGG | + | chr4_4:73257436-73257455 | Msa0701780:intron | 45.0% | |
| ACCATGGGAATCAAGTGAGA+TGG | - | chr4_4:73257440-73257459 | None:intergenic | 45.0% | |
| ! | TAAACGGAGGTGCAAACCAT+GGG | - | chr4_4:73257455-73257474 | None:intergenic | 45.0% |
| ! | ATAAACGGAGGTGCAAACCA+TGG | - | chr4_4:73257456-73257475 | None:intergenic | 45.0% |
| ! | TATTGACTGCAAGCCAACTG+TGG | + | chr4_4:73257526-73257545 | Msa0701780:intron | 45.0% |
| AATGGCAACTCAAGTTCACC+TGG | - | chr4_4:73257761-73257780 | None:intergenic | 45.0% | |
| CTTAATCTCACAGCCTCATG+AGG | - | chr4_4:73257812-73257831 | None:intergenic | 45.0% | |
| CTCATGAGGCTGTGAGATTA+AGG | + | chr4_4:73257810-73257829 | Msa0701780:CDS | 45.0% | |
| TTTGCCAGGGACACAAAAGA+AGG | + | chr4_4:73257919-73257938 | Msa0701780:intron | 45.0% | |
| !!! | GTTTTTTATTTTAATAAATA+GGG | - | chr4_4:73257881-73257900 | None:intergenic | 5.0% |
| !!! | AGTTTTTTATTTTAATAAAT+AGG | - | chr4_4:73257882-73257901 | None:intergenic | 5.0% |
| ATGGATCTGTTGTTCGGGTG+CGG | - | chr4_4:73255971-73255990 | None:intergenic | 50.0% | |
| TACCAGGTACCTGAGGCATA+GGG | - | chr4_4:73256042-73256061 | None:intergenic | 50.0% | |
| ATGTAGGTACCAGGTACCTG+AGG | - | chr4_4:73256049-73256068 | None:intergenic | 50.0% | |
| ! | GAAAGGATAGGGAGCGTAAG+AGG | - | chr4_4:73256217-73256236 | None:intergenic | 50.0% |
| CCAGGAAAAAACAGCTGCAG+GGG | - | chr4_4:73256496-73256515 | None:intergenic | 50.0% | |
| TGGTGTGTGGTCAGCATTCT+TGG | + | chr4_4:73256721-73256740 | Msa0701780:CDS | 50.0% | |
| GTCAGCATTCTTGGCACTTC+TGG | + | chr4_4:73256730-73256749 | Msa0701780:CDS | 50.0% | |
| ! | ATGTGGGAGCTTTAGTGCAC+CGG | - | chr4_4:73257574-73257593 | None:intergenic | 50.0% |
| ACTAAAGCTCCCACATACGC+AGG | + | chr4_4:73257578-73257597 | Msa0701780:intron | 50.0% | |
| CTAAAGCTCCCACATACGCA+GGG | + | chr4_4:73257579-73257598 | Msa0701780:intron | 50.0% | |
| GGTGATTGTAGCTCCTCATG+AGG | + | chr4_4:73257796-73257815 | Msa0701780:CDS | 50.0% | |
| GTTTCCACCTTAGCGGTCAT+CGG | + | chr4_4:73258033-73258052 | Msa0701780:CDS | 50.0% | |
| AGTGATACCGATGACCGCTA+AGG | - | chr4_4:73258043-73258062 | None:intergenic | 50.0% | |
| AGAACTCCACCTCTGACATG+AGG | + | chr4_4:73258315-73258334 | Msa0701780:three_prime_UTR | 50.0% | |
| GAACTCCACCTCTGACATGA+GGG | + | chr4_4:73258316-73258335 | Msa0701780:three_prime_UTR | 50.0% | |
| AAGAACCCTCATGTCAGAGG+TGG | - | chr4_4:73258324-73258343 | None:intergenic | 50.0% | |
| GCAAAGAACCCTCATGTCAG+AGG | - | chr4_4:73258327-73258346 | None:intergenic | 50.0% | |
| ! | GATTGAAGGTGCGAGTGCGA+GGG | - | chr4_4:73256019-73256038 | None:intergenic | 55.0% |
| CCTGAGGCATAGGGGATTGA+AGG | - | chr4_4:73256033-73256052 | None:intergenic | 55.0% | |
| CCTTCAATCCCCTATGCCTC+AGG | + | chr4_4:73256030-73256049 | Msa0701780:CDS | 55.0% | |
| ACCAGGTACCTGAGGCATAG+GGG | - | chr4_4:73256041-73256060 | None:intergenic | 55.0% | |
| GTACCAGGTACCTGAGGCAT+AGG | - | chr4_4:73256043-73256062 | None:intergenic | 55.0% | |
| !!! | CCCCTGCAGCTGTTTTTTCC+TGG | + | chr4_4:73256493-73256512 | Msa0701780:CDS | 55.0% |
| GTAGGGTGACGCACCTATTG+TGG | - | chr4_4:73257203-73257222 | None:intergenic | 55.0% | |
| ! | TGTGGGAGCTTTAGTGCACC+GGG | - | chr4_4:73257573-73257592 | None:intergenic | 55.0% |
| ! | CATATGGTGGGACCTCTTCC+CGG | - | chr4_4:73257606-73257625 | None:intergenic | 55.0% |
| GGAAGAGGTCCCACCATATG+TGG | + | chr4_4:73257606-73257625 | Msa0701780:intron | 55.0% | |
| ! | GGCACCTTCTTTTGTGTCCC+TGG | - | chr4_4:73257926-73257945 | None:intergenic | 55.0% |
| GATACCGATGACCGCTAAGG+TGG | - | chr4_4:73258040-73258059 | None:intergenic | 55.0% | |
| CTGTTGTTCGGGTGCGGTTG+AGG | - | chr4_4:73255965-73255984 | None:intergenic | 60.0% | |
| ! | GGATTGAAGGTGCGAGTGCG+AGG | - | chr4_4:73256020-73256039 | None:intergenic | 60.0% |
| TCCCCTATGCCTCAGGTACC+TGG | + | chr4_4:73256037-73256056 | Msa0701780:intron | 60.0% | |
| TTCCCGGACCCTGCGTATGT+GGG | - | chr4_4:73257590-73257609 | None:intergenic | 60.0% | |
| GCGAGTGCGAGGGTGAGAGA+AGG | - | chr4_4:73256009-73256028 | None:intergenic | 65.0% | |
| GCTCCCACATACGCAGGGTC+CGG | + | chr4_4:73257584-73257603 | Msa0701780:intron | 65.0% | |
| CTCCCACATACGCAGGGTCC+GGG | + | chr4_4:73257585-73257604 | Msa0701780:intron | 65.0% | |
| CTTCCCGGACCCTGCGTATG+TGG | - | chr4_4:73257591-73257610 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+AGG | + | chr4_4:73257591-73257610 | Msa0701780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 73255752 | 73258391 | 73255752 | ID=Msa0701780;Name=Msa0701780 |
| chr4_4 | mRNA | 73255752 | 73258391 | 73255752 | ID=Msa0701780-mRNA-1;Parent=Msa0701780;Name=Msa0701780-mRNA-1;_AED=0.14;_eAED=0.14;_QI=118|1|1|1|1|1|6|302|237 |
| chr4_4 | exon | 73255752 | 73256051 | 73255752 | ID=Msa0701780-mRNA-1:exon:22419;Parent=Msa0701780-mRNA-1 |
| chr4_4 | exon | 73256140 | 73256277 | 73256140 | ID=Msa0701780-mRNA-1:exon:22420;Parent=Msa0701780-mRNA-1 |
| chr4_4 | exon | 73256425 | 73256520 | 73256425 | ID=Msa0701780-mRNA-1:exon:22421;Parent=Msa0701780-mRNA-1 |
| chr4_4 | exon | 73256712 | 73256776 | 73256712 | ID=Msa0701780-mRNA-1:exon:22422;Parent=Msa0701780-mRNA-1 |
| chr4_4 | exon | 73257762 | 73257831 | 73257762 | ID=Msa0701780-mRNA-1:exon:22423;Parent=Msa0701780-mRNA-1 |
| chr4_4 | exon | 73257927 | 73258391 | 73257927 | ID=Msa0701780-mRNA-1:exon:22424;Parent=Msa0701780-mRNA-1 |
| chr4_4 | five_prime_UTR | 73255752 | 73255869 | 73255752 | ID=Msa0701780-mRNA-1:five_prime_utr;Parent=Msa0701780-mRNA-1 |
| chr4_4 | CDS | 73255870 | 73256051 | 73255870 | ID=Msa0701780-mRNA-1:cds;Parent=Msa0701780-mRNA-1 |
| chr4_4 | CDS | 73256140 | 73256277 | 73256140 | ID=Msa0701780-mRNA-1:cds;Parent=Msa0701780-mRNA-1 |
| chr4_4 | CDS | 73256425 | 73256520 | 73256425 | ID=Msa0701780-mRNA-1:cds;Parent=Msa0701780-mRNA-1 |
| chr4_4 | CDS | 73256712 | 73256776 | 73256712 | ID=Msa0701780-mRNA-1:cds;Parent=Msa0701780-mRNA-1 |
| chr4_4 | CDS | 73257762 | 73257831 | 73257762 | ID=Msa0701780-mRNA-1:cds;Parent=Msa0701780-mRNA-1 |
| chr4_4 | CDS | 73257927 | 73258089 | 73257927 | ID=Msa0701780-mRNA-1:cds;Parent=Msa0701780-mRNA-1 |
| chr4_4 | three_prime_UTR | 73258090 | 73258391 | 73258090 | ID=Msa0701780-mRNA-1:three_prime_utr;Parent=Msa0701780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
