AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296600 MtrunA17_Chr4g0053421 94.363 408 21 1 1 408 1 406 0.0 727
Msa1296600 MtrunA17_Chr8g0370051 97.561 82 1 1 295 376 21 101 1.08e-50 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296600 AT5G67290.1 71.622 370 99 2 38 405 40 405 0.0 532

Find 185 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTCAAGGTTTAGAGTTTC+TGG 0.052251 8_3:-56278631 Msa1296600:CDS
CGTAATAGCATTAGCTTCTT+TGG 0.192294 8_3:+56278579 None:intergenic
GGAAATTGTGATTGGGAAAT+TGG 0.237880 8_3:-56278773 Msa1296600:CDS
AATTATTATGAATTCAGTTT+AGG 0.262062 8_3:+56279496 None:intergenic
GGGCCCTTGGTCTAGTAAAT+TGG 0.278810 8_3:-56278662 Msa1296600:CDS
GTACTTCTCGAACTTGTTAC+AGG 0.302335 8_3:+56277057 None:intergenic
TGGGCTCTAAAACAATACTA+TGG 0.307026 8_3:+56278599 None:intergenic
CGTCAGCTACTTTGCCGTCT+TGG 0.313573 8_3:-56278912 Msa1296600:CDS
GTTGCTGAGCTTGTACTTGA+TGG 0.314697 8_3:-56277291 Msa1296600:CDS
ATTATTATGAATTCAGTTTA+GGG 0.319491 8_3:+56279497 None:intergenic
GTAATAGCATTAGCTTCTTT+GGG 0.322290 8_3:+56278580 None:intergenic
TGTAACGGAGGCACCTTTCT+TGG 0.330519 8_3:+56279164 None:intergenic
TTCCGCCAACTAGTATAATA+TGG 0.334178 8_3:+56279407 None:intergenic
GTTTGCGGTGGCGGAGTTAT+CGG 0.334496 8_3:-56279210 Msa1296600:CDS
TAGGAATCCACCAGCTTTAC+CGG 0.334757 8_3:+56279107 None:intergenic
GATGATGGTGTGCCGATTAT+AGG 0.335684 8_3:-56277399 Msa1296600:CDS
ACTTTGCCGTCTTGGATTGA+TGG 0.340624 8_3:-56278904 Msa1296600:CDS
CCGCAAACAACCACTTTCTT+CGG 0.343837 8_3:+56279225 None:intergenic
TTTAGTCCTGCTAGATTTGT+TGG 0.345510 8_3:-56277240 Msa1296600:CDS
TGGATTGATGGGCCGGCCCA+TGG 0.348270 8_3:-56278892 Msa1296600:CDS
GTTTAGAGTTTCTGGGCTTA+AGG 0.354081 8_3:-56278623 Msa1296600:CDS
GTAGGCCGAGGGTACACTTC+TGG 0.354479 8_3:+56278502 None:intergenic
GTGGATTCCTAGCTTTAGAT+TGG 0.367942 8_3:-56279095 Msa1296600:CDS
CCACCATTGTTGATCTTAAA+CGG 0.372685 8_3:-56277263 Msa1296600:CDS
CGCAAACAACCACTTTCTTC+GGG 0.379429 8_3:+56279226 None:intergenic
CTCACACACTAAGTCTGATT+TGG 0.384313 8_3:+56276896 None:intergenic
GTGGAAATGCGTATTCTGTT+TGG 0.389369 8_3:+56279297 None:intergenic
GCTCAAGGTTTAGAGTTTCT+GGG 0.393881 8_3:-56278630 Msa1296600:CDS
ACCATTGCTTGTGCCGCTTC+CGG 0.396774 8_3:-56279126 Msa1296600:CDS
CACTTTCTTCGGGTGATCCA+TGG 0.400502 8_3:+56279236 None:intergenic
TGCATAAAATATGCAAGGTC+CGG 0.400962 8_3:+56276981 None:intergenic
AGTAGAAAATGCTTAACATT+TGG 0.402992 8_3:+56279627 None:intergenic
AAGAGGGGTCCTTCGATTAG+AGG 0.409881 8_3:+56278528 None:intergenic
GCCCATGGGCCTAAAACAAT+TGG 0.415627 8_3:-56278877 Msa1296600:CDS
GCCGTCTTGGATTGATGGGC+CGG 0.417639 8_3:-56278899 Msa1296600:CDS
GGATTGATGGGCCGGCCCAT+GGG 0.421402 8_3:-56278891 Msa1296600:CDS
AAAGTGGTTGTTTGCGGTGG+CGG 0.424230 8_3:-56279219 Msa1296600:CDS
CCGATTATAGGAGAGATTCC+TGG 0.427774 8_3:-56277387 Msa1296600:CDS
TCGTTACCCCGTATCTCCTC+TGG 0.428366 8_3:+56277522 None:intergenic
GGGTGTTGTGGATGCGGATG+CGG 0.429173 8_3:-56278698 Msa1296600:CDS
CAATATCTCCAACGTGGATC+CGG 0.431526 8_3:-56279650 Msa1296600:five_prime_UTR
CCAGGAATCTCTCCTATAAT+CGG 0.432508 8_3:+56277387 None:intergenic
TTTCAAGAGTGGTTTAAAAT+CGG 0.432897 8_3:+56279603 None:intergenic
CTTTGCCGTCTTGGATTGAT+GGG 0.436410 8_3:-56278903 Msa1296600:CDS
ATTCTCAATGGTCCTGCCAC+TGG 0.441042 8_3:-56277321 Msa1296600:CDS
CTGATGATCCAGAGGAGATA+CGG 0.442639 8_3:-56277530 Msa1296600:CDS
TATGATGTATATATAACTGT+TGG 0.447454 8_3:-56277142 Msa1296600:three_prime_UTR
TTAGTCCTGCTAGATTTGTT+GGG 0.447933 8_3:-56277239 Msa1296600:CDS
GGTGGCCGGGGTTCGAACCC+CGG 0.448110 8_3:-56277000 Msa1296600:three_prime_UTR
CGTATCTCCTCTGGATCATC+AGG 0.456119 8_3:+56277531 None:intergenic
GCAACAGCAGCTCCAGTGGC+AGG 0.457894 8_3:+56277309 None:intergenic
GAAGTGTACCCTCGGCCTAC+AGG 0.459094 8_3:-56278499 Msa1296600:intron
TACGGTGTGGAAATTGTGAT+TGG 0.463322 8_3:-56278781 Msa1296600:CDS
AGACCGTATCAAGCCATCTC+GGG 0.465287 8_3:-56277467 Msa1296600:CDS
GTTGAATCGGTGGTTCTAGA+AGG 0.466838 8_3:-56278724 Msa1296600:CDS
TAGCGACGGGACATAGTTGC+TGG 0.467406 8_3:-56277347 Msa1296600:CDS
CCGAAGAAAGTGGTTGTTTG+CGG 0.469061 8_3:-56279225 Msa1296600:CDS
CTCTTAGTACATGGTGTGGC+AGG 0.469999 8_3:-56277198 Msa1296600:three_prime_UTR
CACGAGCGAGATGTTCCATT+GGG 0.472582 8_3:+56279061 None:intergenic
TCACTGTCTCAAGAGCTTAA+CGG 0.483959 8_3:-56279018 Msa1296600:CDS
TGTGCCGCTTCCGGTAAAGC+TGG 0.485821 8_3:-56279117 Msa1296600:CDS
AATTCAGTTTAGGGAAGCTA+TGG 0.489428 8_3:+56279506 None:intergenic
GCATAAAATATGCAAGGTCC+GGG 0.491454 8_3:+56276982 None:intergenic
AGATTGAACTGAATTGATAG+TGG 0.491685 8_3:+56279278 None:intergenic
GTTGTAATCAGAACACCAAC+TGG 0.492757 8_3:-56279564 Msa1296600:five_prime_UTR
TGAGCTTAGCTCAGTTGGTA+TGG 0.493252 8_3:+56276954 None:intergenic
CCTCGTGAGCTTAGCTCAGT+TGG 0.495913 8_3:+56276949 None:intergenic
GCTTACTTTCTCGCCAAGAA+AGG 0.496186 8_3:-56279177 Msa1296600:CDS
TCCACCAGCTTTACCGGAAG+CGG 0.498128 8_3:+56279113 None:intergenic
TCAAGCCATCTCGGGGAAGA+AGG 0.503074 8_3:-56277459 Msa1296600:CDS
GATTGGGAAATTGGAGAAGT+TGG 0.503420 8_3:-56278764 Msa1296600:CDS
TCACTCCTTCTTCCCCGAGA+TGG 0.503688 8_3:+56277454 None:intergenic
CAGGGGAGGTGTATGTGTGT+GGG 0.503912 8_3:-56277575 Msa1296600:CDS
AATTGGAGTTGTTGAGCTCA+AGG 0.504811 8_3:-56278645 Msa1296600:CDS
GCACGAGCGAGATGTTCCAT+TGG 0.507781 8_3:+56279060 None:intergenic
CGATTATAGGAGAGATTCCT+GGG 0.510562 8_3:-56277386 Msa1296600:CDS
GAGAAGTTGGTGGTGGAAGG+AGG 0.512798 8_3:-56278751 Msa1296600:CDS
AATGACCATATTATACTAGT+TGG 0.513748 8_3:-56279412 Msa1296600:five_prime_UTR
TGATGATCCAGAGGAGATAC+GGG 0.515059 8_3:-56277529 Msa1296600:CDS
TTGGAGAAGTTGGTGGTGGA+AGG 0.521275 8_3:-56278754 Msa1296600:CDS
ATTACAACTCAGATGGATAG+AGG 0.521278 8_3:+56279579 None:intergenic
AAGACCGTATCAAGCCATCT+CGG 0.521544 8_3:-56277468 Msa1296600:CDS
CTCAGCAACAGCAGCTCCAG+TGG 0.525546 8_3:+56277305 None:intergenic
TGTTGTGGATGCGGATGCGG+TGG 0.525919 8_3:-56278695 Msa1296600:CDS
TCAGGGGAGGTGTATGTGTG+TGG 0.526444 8_3:-56277576 Msa1296600:intron
GTGTCCGTGTAAACATTTGC+GGG 0.527352 8_3:+56278827 None:intergenic
ACCGGAAGCGGCACAAGCAA+TGG 0.527375 8_3:+56279125 None:intergenic
GAAAATGCTTAACATTTGGC+CGG 0.528164 8_3:+56279631 None:intergenic
GAGAACGCGGTGGAGAAGTA+CGG 0.529700 8_3:-56278799 Msa1296600:CDS
ACTTTCTTCGGGTGATCCAT+GGG 0.531163 8_3:+56279237 None:intergenic
TTCCCCGAGATGGCTTGATA+CGG 0.532681 8_3:+56277464 None:intergenic
ATCGGTGGTTCTAGAAGGTG+GGG 0.534614 8_3:-56278719 Msa1296600:CDS
GGAGAGATTCCTGGGGTGAA+AGG 0.540724 8_3:-56277378 Msa1296600:CDS
AATCGGTGGTTCTAGAAGGT+GGG 0.541985 8_3:-56278720 Msa1296600:CDS
CTAGCTTTAGATTGGTGTGA+CGG 0.542058 8_3:-56279087 Msa1296600:CDS
TGGGAAATTGGAGAAGTTGG+TGG 0.544163 8_3:-56278761 Msa1296600:CDS
TGTTCTGATTACAACTCAGA+TGG 0.544527 8_3:+56279572 None:intergenic
AAGGTCCGGGGTTCGAACCC+CGG 0.544816 8_3:+56276995 None:intergenic
GAAATTGGAGAAGTTGGTGG+TGG 0.545179 8_3:-56278758 Msa1296600:CDS
ATTACCAGCCACAAAATACA+AGG 0.545802 8_3:-56279437 Msa1296600:five_prime_UTR
TACTAAGAGTGACTAAGCCT+TGG 0.546149 8_3:+56277212 None:intergenic
GGAAGGAGGAAAAGTTGAAT+CGG 0.546489 8_3:-56278737 Msa1296600:CDS
GCCGCTTCCGGTAAAGCTGG+TGG 0.546489 8_3:-56279114 Msa1296600:CDS
TGGGATGTCAAAGGAGGAAG+AGG 0.547600 8_3:-56277556 Msa1296600:CDS
TGGATAGAGGATTTCAAGAG+TGG 0.550064 8_3:+56279592 None:intergenic
AAGAAAGTGGTTGTTTGCGG+TGG 0.550857 8_3:-56279222 Msa1296600:CDS
GACCATATTATACTAGTTGG+CGG 0.551011 8_3:-56279409 Msa1296600:five_prime_UTR
CGTCACACCAATCTAAAGCT+AGG 0.552962 8_3:+56279088 None:intergenic
AGTTGCTGGGGTATTCTCAA+TGG 0.554810 8_3:-56277333 Msa1296600:CDS
GATCGATAACCGTATGATTG+TGG 0.557749 8_3:+56278994 None:intergenic
AATCAATTGCGATGCTGAAG+AGG 0.563061 8_3:-56277497 Msa1296600:CDS
AAAGGTTGTTATGTAGCGAC+GGG 0.565815 8_3:-56277360 Msa1296600:CDS
GACAATGCATAAAATATGCA+AGG 0.573559 8_3:+56276976 None:intergenic
GTACGCCCAACAAATCTAGC+AGG 0.574585 8_3:+56277234 None:intergenic
GGGCTCTAAAACAATACTAT+GGG 0.575399 8_3:+56278600 None:intergenic
TAATACAGTTAAAGTCCAGT+TGG 0.577336 8_3:+56279549 None:intergenic
AGTGTCCGTGTAAACATTTG+CGG 0.578489 8_3:+56278826 None:intergenic
TTGGTGTGACGGAGGCCCAA+TGG 0.578735 8_3:-56279076 Msa1296600:CDS
TTGATCCAGAAGTGTACCCT+CGG 0.583741 8_3:-56278507 Msa1296600:CDS
CTATGGTTCTCGATCAAGAA+GGG 0.586109 8_3:+56279523 None:intergenic
CATGGATCACCCGAAGAAAG+TGG 0.588077 8_3:-56279235 Msa1296600:CDS
GAAATGCGTATTCTGTTTGG+AGG 0.589634 8_3:+56279300 None:intergenic
GCTTAGTCACTCTTAGTACA+TGG 0.592068 8_3:-56277207 Msa1296600:exon
ATCAATTGCGATGCTGAAGA+GGG 0.593161 8_3:-56277496 Msa1296600:CDS
GAAAGGTTGTTATGTAGCGA+CGG 0.593501 8_3:-56277361 Msa1296600:CDS
AACACATGAAACGACGGCGC+AGG 0.595682 8_3:-56278854 Msa1296600:CDS
ACAATCATACTTCATGAACT+AGG 0.597320 8_3:-56276926 Msa1296600:three_prime_UTR
AAATTCTCAATCATCGCCCA+TGG 0.597393 8_3:-56279253 Msa1296600:CDS
TAGATTTGTTGGGCGTACCA+AGG 0.600268 8_3:-56277229 Msa1296600:CDS
AGCGACGGGACATAGTTGCT+GGG 0.602375 8_3:-56277346 Msa1296600:CDS
ACGGTGTGGAAATTGTGATT+GGG 0.603421 8_3:-56278780 Msa1296600:CDS
ACATAACAACCTTTCACCCC+AGG 0.606403 8_3:+56277369 None:intergenic
GGGTACACTTCTGGATCAAG+AGG 0.609222 8_3:+56278511 None:intergenic
AGAGGTACCTGATGATCCAG+AGG 0.611459 8_3:-56277538 Msa1296600:CDS
GAATCGGTGGTTCTAGAAGG+TGG 0.612809 8_3:-56278721 Msa1296600:CDS
GGAAGCGGCACAAGCAATGG+TGG 0.615498 8_3:+56279128 None:intergenic
CCAACTGAGCTAAGCTCACG+AGG 0.617839 8_3:-56276949 Msa1296600:three_prime_UTR
AACTCCAATTTACTAGACCA+AGG 0.620795 8_3:+56278658 None:intergenic
GGATTTCTCAATGAGTGTAA+CGG 0.624743 8_3:+56279149 None:intergenic
GGGTCCTTCGATTAGAGGCA+CGG 0.625148 8_3:+56278533 None:intergenic
TTGATTCTTCAGTTACGGTG+AGG 0.625754 8_3:+56278956 None:intergenic
CGGGGAAGAAGGAGTGAAGG+TGG 0.626528 8_3:-56277448 Msa1296600:CDS
TGCACCCGCAAATGTTTACA+CGG 0.626532 8_3:-56278831 Msa1296600:CDS
ACATGCATACCTGTAGGCCG+AGG 0.628125 8_3:+56278490 None:intergenic
GACCGTATCAAGCCATCTCG+GGG 0.629690 8_3:-56277466 Msa1296600:CDS
CTTAACGGTCCACAATCATA+CGG 0.634820 8_3:-56279003 Msa1296600:CDS
GGTACACTTCTGGATCAAGA+GGG 0.635457 8_3:+56278512 None:intergenic
CCGTTTAAGATCAACAATGG+TGG 0.636811 8_3:+56277263 None:intergenic
TAATTGATACATGTATGCGA+AGG 0.638270 8_3:-56279478 Msa1296600:five_prime_UTR
AAACCGTTTAAGATCAACAA+TGG 0.639170 8_3:+56277260 None:intergenic
GCTTTAGATTGGTGTGACGG+AGG 0.639280 8_3:-56279084 Msa1296600:CDS
ACATTTGGCCGGATCCACGT+TGG 0.639395 8_3:+56279642 None:intergenic
GCCGGCCCATCAATCCAAGA+CGG 0.640743 8_3:+56278898 None:intergenic
GCTATGGTTCTCGATCAAGA+AGG 0.643959 8_3:+56279522 None:intergenic
TCTCGGGGAAGAAGGAGTGA+AGG 0.650707 8_3:-56277451 Msa1296600:CDS
TTTCTTGGCGAGAAAGTAAG+CGG 0.651174 8_3:+56279179 None:intergenic
GTATGTGTGTGGGATGTCAA+AGG 0.654645 8_3:-56277565 Msa1296600:CDS
CATAAAATATGCAAGGTCCG+GGG 0.657923 8_3:+56276983 None:intergenic
ACTCCAATTTACTAGACCAA+GGG 0.659722 8_3:+56278659 None:intergenic
CGCGGTGGAGAAGTACGGTG+TGG 0.659962 8_3:-56278794 Msa1296600:CDS
AGGAGGAAAAGTTGAATCGG+TGG 0.662075 8_3:-56278734 Msa1296600:CDS
GCTACCGTGCCTCTAATCGA+AGG 0.663877 8_3:-56278537 Msa1296600:CDS
TAAGCTCTTGAGACAGTGAA+CGG 0.665750 8_3:+56279022 None:intergenic
AATTGGAACACATGAAACGA+CGG 0.667048 8_3:-56278860 Msa1296600:CDS
CATGCATACCTGTAGGCCGA+GGG 0.669805 8_3:+56278491 None:intergenic
GCTAATCTGTATGAATCTAG+CGG 0.674534 8_3:-56279331 Msa1296600:CDS
AGACGGCAAAGTAGCTGACG+AGG 0.677945 8_3:+56278915 None:intergenic
CGGCAAAGTAGCTGACGAGG+AGG 0.678972 8_3:+56278918 None:intergenic
TGTGTGTGGGATGTCAAAGG+AGG 0.686845 8_3:-56277562 Msa1296600:CDS
GCGACGGGACATAGTTGCTG+GGG 0.688705 8_3:-56277345 Msa1296600:CDS
GGCACACCATCATCAGTACA+CGG 0.689638 8_3:+56277408 None:intergenic
GTCACTCTTAGTACATGGTG+TGG 0.692627 8_3:-56277202 Msa1296600:three_prime_UTR
TTACCAGCCACAAAATACAA+GGG 0.693140 8_3:-56279436 Msa1296600:five_prime_UTR
GACACTGATTGAGAACGCGG+TGG 0.698796 8_3:-56278809 Msa1296600:CDS
GCTCTTGAGACAGTGAACGG+TGG 0.699538 8_3:+56279025 None:intergenic
AGTTACGGTGAGGCTGAGAG+CGG 0.699730 8_3:+56278966 None:intergenic
TCGGTGGTTCTAGAAGGTGG+GGG 0.701122 8_3:-56278718 Msa1296600:CDS
TTTCTCAATGAGTGTAACGG+AGG 0.702173 8_3:+56279152 None:intergenic
GTACACTTCTGGATCAAGAG+GGG 0.705861 8_3:+56278513 None:intergenic
ACGGACACTGATTGAGAACG+CGG 0.711223 8_3:-56278812 Msa1296600:CDS
TGACGAGGAGGAAGAAACAG+TGG 0.711480 8_3:+56278930 None:intergenic
ATCAAACAATATCTCCAACG+TGG 0.727124 8_3:-56279656 Msa1296600:five_prime_UTR
AATCTGTATGAATCTAGCGG+CGG 0.733075 8_3:-56279328 Msa1296600:CDS
GATTATAGGAGAGATTCCTG+GGG 0.781423 8_3:-56277385 Msa1296600:CDS
GATGATCCAGAGGAGATACG+GGG 0.782160 8_3:-56277528 Msa1296600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTTTTTTTTTAT+AGG + chr8_3:56278577-56278596 None:intergenic 0.0%
!! ATAAAAAAAAAAAAAAATTA+AGG - chr8_3:56278577-56278596 Msa1296600:CDS 0.0%
!! TAAAAAAAAAAAAAAATTAA+GGG - chr8_3:56278578-56278597 Msa1296600:CDS 0.0%
!! AATTTAAAAATCAAAGATAT+CGG + chr8_3:56278156-56278175 None:intergenic 10.0%
!!! TATCTTTGATTTTTAAATTT+AGG - chr8_3:56278157-56278176 Msa1296600:intron 10.0%
!!! TATTTTATTTTAAACAATGT+TGG - chr8_3:56278191-56278210 Msa1296600:intron 10.0%
!!! AATTTAGACTTTTTTTTTTA+AGG - chr8_3:56278369-56278388 Msa1296600:intron 10.0%
!! ATTATTATGAATTCAGTTTA+GGG + chr8_3:56277069-56277088 None:intergenic 15.0%
!! AATTATTATGAATTCAGTTT+AGG + chr8_3:56277070-56277089 None:intergenic 15.0%
!! AAAAAAATGAAAAACTAAAG+AGG - chr8_3:56277177-56277196 Msa1296600:three_prime_UTR 15.0%
!!! TATAATTTACAAACGTATTT+TGG - chr8_3:56278419-56278438 Msa1296600:intron 15.0%
!! TCACAGAAAACTATTTATTT+AGG - chr8_3:56278114-56278133 Msa1296600:intron 20.0%
!!! TAGACTTTTTTTTTTAAGGA+AGG - chr8_3:56278373-56278392 Msa1296600:intron 20.0%
!! GTCTCTTAAATTCATATTAT+GGG + chr8_3:56278446-56278465 None:intergenic 20.0%
!! AGTCTCTTAAATTCATATTA+TGG + chr8_3:56278447-56278466 None:intergenic 20.0%
!!! TTCTTTAAAAACACTTAGTT+TGG + chr8_3:56278605-56278624 None:intergenic 20.0%
!! TTGTTGTATTTATATGCATT+TGG - chr8_3:56278693-56278712 Msa1296600:CDS 20.0%
!! TAAACATCAGTATCTATTAA+TGG + chr8_3:56278959-56278978 None:intergenic 20.0%
!!! TGATGTTTATTTTCTTATCA+GGG - chr8_3:56278970-56278989 Msa1296600:CDS 20.0%
!! TATGATGTATATATAACTGT+TGG - chr8_3:56279421-56279440 Msa1296600:five_prime_UTR 20.0%
! AGTAGAAAATGCTTAACATT+TGG + chr8_3:56276939-56276958 None:intergenic 25.0%
!! TTTCAAGAGTGGTTTAAAAT+CGG + chr8_3:56276963-56276982 None:intergenic 25.0%
! AATGACCATATTATACTAGT+TGG - chr8_3:56277151-56277170 Msa1296600:three_prime_UTR 25.0%
!!! CAGATTAGCATTTTTAGAAT+TGG + chr8_3:56277221-56277240 None:intergenic 25.0%
! AATGTTGGTCACTTAAATTA+TGG - chr8_3:56278206-56278225 Msa1296600:intron 25.0%
! CAAATGTTAGTAATTACTTC+TGG + chr8_3:56278554-56278573 None:intergenic 25.0%
!!! GTGTTTTTAAAGAAGCAAAA+TGG - chr8_3:56278611-56278630 Msa1296600:CDS 25.0%
! TTTAAAGAAGCAAAATGGAA+AGG - chr8_3:56278616-56278635 Msa1296600:CDS 25.0%
!! CAAGAATTTCTAAGAACATT+TGG + chr8_3:56278676-56278695 None:intergenic 25.0%
! ATCCTTATTCATAGATTTCT+TGG - chr8_3:56278716-56278735 Msa1296600:CDS 25.0%
! AACCAAGAAATCTATGAATA+AGG + chr8_3:56278721-56278740 None:intergenic 25.0%
! AAATGGTTTGATCCAATTTA+TGG + chr8_3:56278744-56278763 None:intergenic 25.0%
!! TTTTCAAATTCGAGAAATGT+TGG - chr8_3:56278774-56278793 Msa1296600:CDS 25.0%
!!! CTGATGTTTATTTTCTTATC+AGG - chr8_3:56278969-56278988 Msa1296600:CDS 25.0%
!!! GATGTTTATTTTCTTATCAG+GGG - chr8_3:56278971-56278990 Msa1296600:CDS 25.0%
TAATACAGTTAAAGTCCAGT+TGG + chr8_3:56277017-56277036 None:intergenic 30.0%
TAATTGATACATGTATGCGA+AGG - chr8_3:56277085-56277104 Msa1296600:three_prime_UTR 30.0%
AGATTGAACTGAATTGATAG+TGG + chr8_3:56277288-56277307 None:intergenic 30.0%
!! GGTTTTTGATTCTTCAGTTA+CGG + chr8_3:56277615-56277634 None:intergenic 30.0%
! TCATGTGTTCCAATTGTTTT+AGG + chr8_3:56277698-56277717 None:intergenic 30.0%
! GTAATAGCATTAGCTTCTTT+GGG + chr8_3:56277986-56278005 None:intergenic 30.0%
CTGTGACTAAGATATTTGAT+TGG + chr8_3:56278100-56278119 None:intergenic 30.0%
GTCACTTAAATTATGGACTT+TGG - chr8_3:56278213-56278232 Msa1296600:intron 30.0%
!!! ACTTGAGCTTTTTTGTCATT+TGG - chr8_3:56278236-56278255 Msa1296600:intron 30.0%
!!! CTTGAGCTTTTTTGTCATTT+GGG - chr8_3:56278237-56278256 Msa1296600:intron 30.0%
GAGTTTAAAAGATGATGTCA+TGG - chr8_3:56278520-56278539 Msa1296600:CDS 30.0%
AACACCACTTGAAAATGAAA+TGG - chr8_3:56278649-56278668 Msa1296600:CDS 30.0%
GATTTCTTGGTTCCATAAAT+TGG - chr8_3:56278729-56278748 Msa1296600:CDS 30.0%
ATTGGATCAAACCATTTCTT+TGG - chr8_3:56278747-56278766 Msa1296600:CDS 30.0%
TTGAAAAGAGTCCAAAGAAA+TGG + chr8_3:56278761-56278780 None:intergenic 30.0%
TTGATTGTGTGCTTACTTAT+AGG - chr8_3:56278797-56278816 Msa1296600:CDS 30.0%
! AAACCGTTTAAGATCAACAA+TGG + chr8_3:56279306-56279325 None:intergenic 30.0%
!!! ACCTTTTCCATTGTTTTTGT+TGG - chr8_3:56279539-56279558 Msa1296600:five_prime_UTR 30.0%
ACCAACAAAAACAATGGAAA+AGG + chr8_3:56279543-56279562 None:intergenic 30.0%
!!! TTTTCCATTGTTTTTGTTGG+TGG - chr8_3:56279542-56279561 Msa1296600:five_prime_UTR 30.0%
GACAATGCATAAAATATGCA+AGG + chr8_3:56279590-56279609 None:intergenic 30.0%
ACAATCATACTTCATGAACT+AGG - chr8_3:56279637-56279656 Msa1296600:five_prime_UTR 30.0%
GAAAATGCTTAACATTTGGC+CGG + chr8_3:56276935-56276954 None:intergenic 35.0%
ATTACAACTCAGATGGATAG+AGG + chr8_3:56276987-56277006 None:intergenic 35.0%
TGTTCTGATTACAACTCAGA+TGG + chr8_3:56276994-56277013 None:intergenic 35.0%
AATTCAGTTTAGGGAAGCTA+TGG + chr8_3:56277060-56277079 None:intergenic 35.0%
! TGTATTTTGTGGCTGGTAAT+TGG + chr8_3:56277126-56277145 None:intergenic 35.0%
ATTACCAGCCACAAAATACA+AGG - chr8_3:56277126-56277145 Msa1296600:three_prime_UTR 35.0%
TTACCAGCCACAAAATACAA+GGG - chr8_3:56277127-56277146 Msa1296600:three_prime_UTR 35.0%
! GTCATTTCCCTTGTATTTTG+TGG + chr8_3:56277137-56277156 None:intergenic 35.0%
GACCATATTATACTAGTTGG+CGG - chr8_3:56277154-56277173 Msa1296600:three_prime_UTR 35.0%
TTCCGCCAACTAGTATAATA+TGG + chr8_3:56277159-56277178 None:intergenic 35.0%
GCTAATCTGTATGAATCTAG+CGG - chr8_3:56277232-56277251 Msa1296600:CDS 35.0%
GGATTTCTCAATGAGTGTAA+CGG + chr8_3:56277417-56277436 None:intergenic 35.0%
AATTGGAACACATGAAACGA+CGG - chr8_3:56277703-56277722 Msa1296600:intron 35.0%
GGAAATTGTGATTGGGAAAT+TGG - chr8_3:56277790-56277809 Msa1296600:intron 35.0%
ACTCCAATTTACTAGACCAA+GGG + chr8_3:56277907-56277926 None:intergenic 35.0%
AACTCCAATTTACTAGACCA+AGG + chr8_3:56277908-56277927 None:intergenic 35.0%
!! GGGCTCTAAAACAATACTAT+GGG + chr8_3:56277966-56277985 None:intergenic 35.0%
!! TGGGCTCTAAAACAATACTA+TGG + chr8_3:56277967-56277986 None:intergenic 35.0%
! CGTAATAGCATTAGCTTCTT+TGG + chr8_3:56277987-56278006 None:intergenic 35.0%
! TAGCTAAGAAAAAGAGCATG+TGG + chr8_3:56278010-56278029 None:intergenic 35.0%
!!! CATAGTGTGTAAGTTTTAGG+TGG + chr8_3:56278285-56278304 None:intergenic 35.0%
CACCTAAAACTTACACACTA+TGG - chr8_3:56278283-56278302 Msa1296600:intron 35.0%
! GACCATAGTGTGTAAGTTTT+AGG + chr8_3:56278288-56278307 None:intergenic 35.0%
TCAACATTGTTAGTTGAGCT+AGG - chr8_3:56278329-56278348 Msa1296600:intron 35.0%
TACCAATGAAGCTACCTATA+GGG + chr8_3:56278482-56278501 None:intergenic 35.0%
TTACCAATGAAGCTACCTAT+AGG + chr8_3:56278483-56278502 None:intergenic 35.0%
!! TGGACCATTTCATTTTCAAG+TGG + chr8_3:56278656-56278675 None:intergenic 35.0%
ACCTTTGAATTACATGTTCC+AGG - chr8_3:56278852-56278871 Msa1296600:CDS 35.0%
ACCTGGAACATGTAATTCAA+AGG + chr8_3:56278856-56278875 None:intergenic 35.0%
!! GATTTCACTTTTGTGCCAAT+GGG + chr8_3:56278880-56278899 None:intergenic 35.0%
!! AGATTTCACTTTTGTGCCAA+TGG + chr8_3:56278881-56278900 None:intergenic 35.0%
!! GTTTATTTTCTTATCAGGGG+AGG - chr8_3:56278974-56278993 Msa1296600:CDS 35.0%
CCACCATTGTTGATCTTAAA+CGG - chr8_3:56279300-56279319 Msa1296600:CDS 35.0%
TTTAGTCCTGCTAGATTTGT+TGG - chr8_3:56279323-56279342 Msa1296600:CDS 35.0%
! TTAGTCCTGCTAGATTTGTT+GGG - chr8_3:56279324-56279343 Msa1296600:CDS 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr8_3:56279585-56279604 None:intergenic 35.0%
TGGATAGAGGATTTCAAGAG+TGG + chr8_3:56276974-56276993 None:intergenic 40.0%
GTTGTAATCAGAACACCAAC+TGG - chr8_3:56276999-56277018 Msa1296600:three_prime_UTR 40.0%
CTATGGTTCTCGATCAAGAA+GGG + chr8_3:56277043-56277062 None:intergenic 40.0%
! TTTCCCTTGTATTTTGTGGC+TGG + chr8_3:56277133-56277152 None:intergenic 40.0%
AATCTGTATGAATCTAGCGG+CGG - chr8_3:56277235-56277254 Msa1296600:CDS 40.0%
GAAATGCGTATTCTGTTTGG+AGG + chr8_3:56277266-56277285 None:intergenic 40.0%
GTGGAAATGCGTATTCTGTT+TGG + chr8_3:56277269-56277288 None:intergenic 40.0%
AAATTCTCAATCATCGCCCA+TGG - chr8_3:56277310-56277329 Msa1296600:CDS 40.0%
TTTCTTGGCGAGAAAGTAAG+CGG + chr8_3:56277387-56277406 None:intergenic 40.0%
TTTCTCAATGAGTGTAACGG+AGG + chr8_3:56277414-56277433 None:intergenic 40.0%
!! GTGGATTCCTAGCTTTAGAT+TGG - chr8_3:56277468-56277487 Msa1296600:CDS 40.0%
!! CTAGCTTTAGATTGGTGTGA+CGG - chr8_3:56277476-56277495 Msa1296600:CDS 40.0%
TAAGCTCTTGAGACAGTGAA+CGG + chr8_3:56277544-56277563 None:intergenic 40.0%
TCACTGTCTCAAGAGCTTAA+CGG - chr8_3:56277545-56277564 Msa1296600:CDS 40.0%
CTTAACGGTCCACAATCATA+CGG - chr8_3:56277560-56277579 Msa1296600:CDS 40.0%
GATCGATAACCGTATGATTG+TGG + chr8_3:56277572-56277591 None:intergenic 40.0%
TTGATTCTTCAGTTACGGTG+AGG + chr8_3:56277610-56277629 None:intergenic 40.0%
!!! TCCAATTGTTTTAGGCCCAT+GGG + chr8_3:56277690-56277709 None:intergenic 40.0%
!!! TTCCAATTGTTTTAGGCCCA+TGG + chr8_3:56277691-56277710 None:intergenic 40.0%
AGTGTCCGTGTAAACATTTG+CGG + chr8_3:56277740-56277759 None:intergenic 40.0%
TACGGTGTGGAAATTGTGAT+TGG - chr8_3:56277782-56277801 Msa1296600:intron 40.0%
ACGGTGTGGAAATTGTGATT+GGG - chr8_3:56277783-56277802 Msa1296600:intron 40.0%
GATTGGGAAATTGGAGAAGT+TGG - chr8_3:56277799-56277818 Msa1296600:intron 40.0%
GGAAGGAGGAAAAGTTGAAT+CGG - chr8_3:56277826-56277845 Msa1296600:intron 40.0%
AATTGGAGTTGTTGAGCTCA+AGG - chr8_3:56277918-56277937 Msa1296600:intron 40.0%
! AGCTCAAGGTTTAGAGTTTC+TGG - chr8_3:56277932-56277951 Msa1296600:intron 40.0%
! GCTCAAGGTTTAGAGTTTCT+GGG - chr8_3:56277933-56277952 Msa1296600:intron 40.0%
! GTTTAGAGTTTCTGGGCTTA+AGG - chr8_3:56277940-56277959 Msa1296600:intron 40.0%
ATTGGTACATGCATACCTGT+AGG + chr8_3:56278082-56278101 None:intergenic 40.0%
ACCAATGAAGCTACCTATAG+GGG + chr8_3:56278481-56278500 None:intergenic 40.0%
AATCAATTGCGATGCTGAAG+AGG - chr8_3:56279066-56279085 Msa1296600:CDS 40.0%
ATCAATTGCGATGCTGAAGA+GGG - chr8_3:56279067-56279086 Msa1296600:CDS 40.0%
!! TTTTTGCCGTGTACTGATGA+TGG - chr8_3:56279149-56279168 Msa1296600:CDS 40.0%
CCAGGAATCTCTCCTATAAT+CGG + chr8_3:56279179-56279198 None:intergenic 40.0%
CGATTATAGGAGAGATTCCT+GGG - chr8_3:56279177-56279196 Msa1296600:CDS 40.0%
GATTATAGGAGAGATTCCTG+GGG - chr8_3:56279178-56279197 Msa1296600:CDS 40.0%
GAAAGGTTGTTATGTAGCGA+CGG - chr8_3:56279202-56279221 Msa1296600:CDS 40.0%
AAAGGTTGTTATGTAGCGAC+GGG - chr8_3:56279203-56279222 Msa1296600:CDS 40.0%
! CCGTTTAAGATCAACAATGG+TGG + chr8_3:56279303-56279322 None:intergenic 40.0%
TACTAAGAGTGACTAAGCCT+TGG + chr8_3:56279354-56279373 None:intergenic 40.0%
GCTTAGTCACTCTTAGTACA+TGG - chr8_3:56279356-56279375 Msa1296600:five_prime_UTR 40.0%
!! GTACTTCTCGAACTTGTTAC+AGG + chr8_3:56279509-56279528 None:intergenic 40.0%
!!! TCCATTGTTTTTGTTGGTGG+TGG - chr8_3:56279545-56279564 Msa1296600:five_prime_UTR 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr8_3:56279583-56279602 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr8_3:56279584-56279603 None:intergenic 40.0%
CAATATCTCCAACGTGGATC+CGG - chr8_3:56276913-56276932 Msa1296600:three_prime_UTR 45.0%
GCTATGGTTCTCGATCAAGA+AGG + chr8_3:56277044-56277063 None:intergenic 45.0%
ACTTTCTTCGGGTGATCCAT+GGG + chr8_3:56277329-56277348 None:intergenic 45.0%
CGCAAACAACCACTTTCTTC+GGG + chr8_3:56277340-56277359 None:intergenic 45.0%
CCGCAAACAACCACTTTCTT+CGG + chr8_3:56277341-56277360 None:intergenic 45.0%
CCGAAGAAAGTGGTTGTTTG+CGG - chr8_3:56277338-56277357 Msa1296600:CDS 45.0%
AAGAAAGTGGTTGTTTGCGG+TGG - chr8_3:56277341-56277360 Msa1296600:CDS 45.0%
GCTTACTTTCTCGCCAAGAA+AGG - chr8_3:56277386-56277405 Msa1296600:CDS 45.0%
TAGGAATCCACCAGCTTTAC+CGG + chr8_3:56277459-56277478 None:intergenic 45.0%
! CGTCACACCAATCTAAAGCT+AGG + chr8_3:56277478-56277497 None:intergenic 45.0%
ACTTTGCCGTCTTGGATTGA+TGG - chr8_3:56277659-56277678 Msa1296600:intron 45.0%
CTTTGCCGTCTTGGATTGAT+GGG - chr8_3:56277660-56277679 Msa1296600:intron 45.0%
TGCACCCGCAAATGTTTACA+CGG - chr8_3:56277732-56277751 Msa1296600:intron 45.0%
GTGTCCGTGTAAACATTTGC+GGG + chr8_3:56277739-56277758 None:intergenic 45.0%
TGGGAAATTGGAGAAGTTGG+TGG - chr8_3:56277802-56277821 Msa1296600:intron 45.0%
!! GAAATTGGAGAAGTTGGTGG+TGG - chr8_3:56277805-56277824 Msa1296600:intron 45.0%
AGGAGGAAAAGTTGAATCGG+TGG - chr8_3:56277829-56277848 Msa1296600:intron 45.0%
!! GTTGAATCGGTGGTTCTAGA+AGG - chr8_3:56277839-56277858 Msa1296600:intron 45.0%
!! AATCGGTGGTTCTAGAAGGT+GGG - chr8_3:56277843-56277862 Msa1296600:intron 45.0%
!!! GATGCGGTGGTTTTAGCATT+GGG - chr8_3:56277881-56277900 Msa1296600:intron 45.0%
GTACACTTCTGGATCAAGAG+GGG + chr8_3:56278053-56278072 None:intergenic 45.0%
GGTACACTTCTGGATCAAGA+GGG + chr8_3:56278054-56278073 None:intergenic 45.0%
! TTGATCCAGAAGTGTACCCT+CGG - chr8_3:56278056-56278075 Msa1296600:intron 45.0%
GGTTATCACCACTTCGTCTA+CGG + chr8_3:56278264-56278283 None:intergenic 45.0%
CTCAAATGAAACCCCCCTAT+AGG - chr8_3:56278465-56278484 Msa1296600:intron 45.0%
CAATGAAGCTACCTATAGGG+GGG + chr8_3:56278479-56278498 None:intergenic 45.0%
CCAATGAAGCTACCTATAGG+GGG + chr8_3:56278480-56278499 None:intergenic 45.0%
TACATGTTCCAGGTTCCCAT+TGG - chr8_3:56278862-56278881 Msa1296600:CDS 45.0%
GTATGTGTGTGGGATGTCAA+AGG - chr8_3:56278998-56279017 Msa1296600:CDS 45.0%
CTGATGATCCAGAGGAGATA+CGG - chr8_3:56279033-56279052 Msa1296600:CDS 45.0%
TGATGATCCAGAGGAGATAC+GGG - chr8_3:56279034-56279053 Msa1296600:CDS 45.0%
AAGACCGTATCAAGCCATCT+CGG - chr8_3:56279095-56279114 Msa1296600:CDS 45.0%
!! GATGATGGTGTGCCGATTAT+AGG - chr8_3:56279164-56279183 Msa1296600:CDS 45.0%
CCGATTATAGGAGAGATTCC+TGG - chr8_3:56279176-56279195 Msa1296600:CDS 45.0%
ACATAACAACCTTTCACCCC+AGG + chr8_3:56279197-56279216 None:intergenic 45.0%
! AGTTGCTGGGGTATTCTCAA+TGG - chr8_3:56279230-56279249 Msa1296600:CDS 45.0%
GTTGCTGAGCTTGTACTTGA+TGG - chr8_3:56279272-56279291 Msa1296600:CDS 45.0%
!! TAGATTTGTTGGGCGTACCA+AGG - chr8_3:56279334-56279353 Msa1296600:CDS 45.0%
GTCACTCTTAGTACATGGTG+TGG - chr8_3:56279361-56279380 Msa1296600:five_prime_UTR 45.0%
GCCACCACCAACAAAAACAA+TGG + chr8_3:56279549-56279568 None:intergenic 45.0%
!!! TTGTTTTTGTTGGTGGTGGC+CGG - chr8_3:56279549-56279568 Msa1296600:five_prime_UTR 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr8_3:56279612-56279631 None:intergenic 45.0%
!! TTAAAATAAAATAAAATTGA+AGG + chr8_3:56278184-56278203 None:intergenic 5.0%
!! TTAAATTATAAAAATATTCT+TGG + chr8_3:56279477-56279496 None:intergenic 5.0%
CACTTTCTTCGGGTGATCCA+TGG + chr8_3:56277330-56277349 None:intergenic 50.0%
CATGGATCACCCGAAGAAAG+TGG - chr8_3:56277328-56277347 Msa1296600:CDS 50.0%
AAAGTGGTTGTTTGCGGTGG+CGG - chr8_3:56277344-56277363 Msa1296600:CDS 50.0%
!! TGTAACGGAGGCACCTTTCT+TGG + chr8_3:56277402-56277421 None:intergenic 50.0%
! GCTTTAGATTGGTGTGACGG+AGG - chr8_3:56277479-56277498 Msa1296600:CDS 50.0%
CACGAGCGAGATGTTCCATT+GGG + chr8_3:56277505-56277524 None:intergenic 50.0%
TGACGAGGAGGAAGAAACAG+TGG + chr8_3:56277636-56277655 None:intergenic 50.0%
!!! ATTGTTTTAGGCCCATGGGC+CGG + chr8_3:56277686-56277705 None:intergenic 50.0%
GCCCATGGGCCTAAAACAAT+TGG - chr8_3:56277686-56277705 Msa1296600:intron 50.0%
! ACGGACACTGATTGAGAACG+CGG - chr8_3:56277751-56277770 Msa1296600:intron 50.0%
!! TTGGAGAAGTTGGTGGTGGA+AGG - chr8_3:56277809-56277828 Msa1296600:intron 50.0%
!! GAATCGGTGGTTCTAGAAGG+TGG - chr8_3:56277842-56277861 Msa1296600:intron 50.0%
!! ATCGGTGGTTCTAGAAGGTG+GGG - chr8_3:56277844-56277863 Msa1296600:intron 50.0%
!!! GGATGCGGTGGTTTTAGCAT+TGG - chr8_3:56277880-56277899 Msa1296600:intron 50.0%
!!! TGGTTTTAGCATTGGGCCCT+TGG - chr8_3:56277888-56277907 Msa1296600:intron 50.0%
GGGCCCTTGGTCTAGTAAAT+TGG - chr8_3:56277901-56277920 Msa1296600:intron 50.0%
AAGAGGGGTCCTTCGATTAG+AGG + chr8_3:56278038-56278057 None:intergenic 50.0%
GGGTACACTTCTGGATCAAG+AGG + chr8_3:56278055-56278074 None:intergenic 50.0%
ATTTGGGTCCGTAGACGAAG+TGG - chr8_3:56278253-56278272 Msa1296600:intron 50.0%
CCCCCTATAGGTAGCTTCAT+TGG - chr8_3:56278477-56278496 Msa1296600:intron 50.0%
! CTTTTGTGCCAATGGGAACC+TGG + chr8_3:56278873-56278892 None:intergenic 50.0%
TGTGTGTGGGATGTCAAAGG+AGG - chr8_3:56279001-56279020 Msa1296600:CDS 50.0%
TGGGATGTCAAAGGAGGAAG+AGG - chr8_3:56279007-56279026 Msa1296600:CDS 50.0%
!! AGAGGTACCTGATGATCCAG+AGG - chr8_3:56279025-56279044 Msa1296600:CDS 50.0%
CGTATCTCCTCTGGATCATC+AGG + chr8_3:56279035-56279054 None:intergenic 50.0%
GATGATCCAGAGGAGATACG+GGG - chr8_3:56279035-56279054 Msa1296600:CDS 50.0%
AGACCGTATCAAGCCATCTC+GGG - chr8_3:56279096-56279115 Msa1296600:CDS 50.0%
TTCCCCGAGATGGCTTGATA+CGG + chr8_3:56279102-56279121 None:intergenic 50.0%
GGCACACCATCATCAGTACA+CGG + chr8_3:56279158-56279177 None:intergenic 50.0%
ATTCTCAATGGTCCTGCCAC+TGG - chr8_3:56279242-56279261 Msa1296600:CDS 50.0%
GTACGCCCAACAAATCTAGC+AGG + chr8_3:56279332-56279351 None:intergenic 50.0%
CTCTTAGTACATGGTGTGGC+AGG - chr8_3:56279365-56279384 Msa1296600:five_prime_UTR 50.0%
!!! TGTTTTTGTTGGTGGTGGCC+GGG - chr8_3:56279550-56279569 Msa1296600:five_prime_UTR 50.0%
ACATTTGGCCGGATCCACGT+TGG + chr8_3:56276924-56276943 None:intergenic 55.0%
!! GTTTGCGGTGGCGGAGTTAT+CGG - chr8_3:56277353-56277372 Msa1296600:CDS 55.0%
!! ACCATTGCTTGTGCCGCTTC+CGG - chr8_3:56277437-56277456 Msa1296600:CDS 55.0%
TCCACCAGCTTTACCGGAAG+CGG + chr8_3:56277453-56277472 None:intergenic 55.0%
GCACGAGCGAGATGTTCCAT+TGG + chr8_3:56277506-56277525 None:intergenic 55.0%
GCTCTTGAGACAGTGAACGG+TGG + chr8_3:56277541-56277560 None:intergenic 55.0%
AGTTACGGTGAGGCTGAGAG+CGG + chr8_3:56277600-56277619 None:intergenic 55.0%
AGACGGCAAAGTAGCTGACG+AGG + chr8_3:56277651-56277670 None:intergenic 55.0%
! CGTCAGCTACTTTGCCGTCT+TGG - chr8_3:56277651-56277670 Msa1296600:intron 55.0%
AACACATGAAACGACGGCGC+AGG - chr8_3:56277709-56277728 Msa1296600:intron 55.0%
! GACACTGATTGAGAACGCGG+TGG - chr8_3:56277754-56277773 Msa1296600:intron 55.0%
GAGAACGCGGTGGAGAAGTA+CGG - chr8_3:56277764-56277783 Msa1296600:intron 55.0%
!! GAGAAGTTGGTGGTGGAAGG+AGG - chr8_3:56277812-56277831 Msa1296600:intron 55.0%
!! TCGGTGGTTCTAGAAGGTGG+GGG - chr8_3:56277845-56277864 Msa1296600:intron 55.0%
!! TCTAGAAGGTGGGGGTGTTG+TGG - chr8_3:56277853-56277872 Msa1296600:intron 55.0%
GCTACCGTGCCTCTAATCGA+AGG - chr8_3:56278026-56278045 Msa1296600:intron 55.0%
GGGTCCTTCGATTAGAGGCA+CGG + chr8_3:56278033-56278052 None:intergenic 55.0%
CATGCATACCTGTAGGCCGA+GGG + chr8_3:56278075-56278094 None:intergenic 55.0%
ACATGCATACCTGTAGGCCG+AGG + chr8_3:56278076-56278095 None:intergenic 55.0%
! TCAGGGGAGGTGTATGTGTG+TGG - chr8_3:56278987-56279006 Msa1296600:CDS 55.0%
! CAGGGGAGGTGTATGTGTGT+GGG - chr8_3:56278988-56279007 Msa1296600:CDS 55.0%
TCGTTACCCCGTATCTCCTC+TGG + chr8_3:56279044-56279063 None:intergenic 55.0%
GACCGTATCAAGCCATCTCG+GGG - chr8_3:56279097-56279116 Msa1296600:CDS 55.0%
TCAAGCCATCTCGGGGAAGA+AGG - chr8_3:56279104-56279123 Msa1296600:CDS 55.0%
TCACTCCTTCTTCCCCGAGA+TGG + chr8_3:56279112-56279131 None:intergenic 55.0%
TCTCGGGGAAGAAGGAGTGA+AGG - chr8_3:56279112-56279131 Msa1296600:CDS 55.0%
GGAGAGATTCCTGGGGTGAA+AGG - chr8_3:56279185-56279204 Msa1296600:CDS 55.0%
TAGCGACGGGACATAGTTGC+TGG - chr8_3:56279216-56279235 Msa1296600:CDS 55.0%
AGCGACGGGACATAGTTGCT+GGG - chr8_3:56279217-56279236 Msa1296600:CDS 55.0%
!!! GTTTTTGTTGGTGGTGGCCG+GGG - chr8_3:56279551-56279570 Msa1296600:five_prime_UTR 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr8_3:56279617-56279636 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr8_3:56279614-56279633 Msa1296600:five_prime_UTR 55.0%
GGAAGCGGCACAAGCAATGG+TGG + chr8_3:56277438-56277457 None:intergenic 60.0%
ACCGGAAGCGGCACAAGCAA+TGG + chr8_3:56277441-56277460 None:intergenic 60.0%
!! TGTGCCGCTTCCGGTAAAGC+TGG - chr8_3:56277446-56277465 Msa1296600:CDS 60.0%
! TTGGTGTGACGGAGGCCCAA+TGG - chr8_3:56277487-56277506 Msa1296600:CDS 60.0%
CGGCAAAGTAGCTGACGAGG+AGG + chr8_3:56277648-56277667 None:intergenic 60.0%
! GCCGTCTTGGATTGATGGGC+CGG - chr8_3:56277664-56277683 Msa1296600:intron 60.0%
GCCGGCCCATCAATCCAAGA+CGG + chr8_3:56277668-56277687 None:intergenic 60.0%
!! AGGTGGGGGTGTTGTGGATG+CGG - chr8_3:56277859-56277878 Msa1296600:intron 60.0%
! GGGTGTTGTGGATGCGGATG+CGG - chr8_3:56277865-56277884 Msa1296600:intron 60.0%
TGTTGTGGATGCGGATGCGG+TGG - chr8_3:56277868-56277887 Msa1296600:intron 60.0%
! GTAGGCCGAGGGTACACTTC+TGG + chr8_3:56278064-56278083 None:intergenic 60.0%
GAAGTGTACCCTCGGCCTAC+AGG - chr8_3:56278064-56278083 Msa1296600:intron 60.0%
CGGGGAAGAAGGAGTGAAGG+TGG - chr8_3:56279115-56279134 Msa1296600:CDS 60.0%
GCGACGGGACATAGTTGCTG+GGG - chr8_3:56279218-56279237 Msa1296600:CDS 60.0%
CTCAGCAACAGCAGCTCCAG+TGG + chr8_3:56279261-56279280 None:intergenic 60.0%
GCCGCTTCCGGTAAAGCTGG+TGG - chr8_3:56277449-56277468 Msa1296600:CDS 65.0%
! TGGATTGATGGGCCGGCCCA+TGG - chr8_3:56277671-56277690 Msa1296600:intron 65.0%
! GGATTGATGGGCCGGCCCAT+GGG - chr8_3:56277672-56277691 Msa1296600:intron 65.0%
! CGCGGTGGAGAAGTACGGTG+TGG - chr8_3:56277769-56277788 Msa1296600:intron 65.0%
GCAACAGCAGCTCCAGTGGC+AGG + chr8_3:56279257-56279276 None:intergenic 65.0%
AAGGTCCGGGGTTCGAACCC+CGG + chr8_3:56279571-56279590 None:intergenic 65.0%
GGTGGCCGGGGTTCGAACCC+CGG - chr8_3:56279563-56279582 Msa1296600:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 56276910 56279675 56276910 ID=Msa1296600;Name=Msa1296600
chr8_3 mRNA 56276910 56279675 56276910 ID=Msa1296600-mRNA-1;Parent=Msa1296600;Name=Msa1296600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=320|1|1|1|1|1|2|314|408
chr8_3 exon 56276910 56277594 56276910 ID=Msa1296600-mRNA-1:exon:16109;Parent=Msa1296600-mRNA-1
chr8_3 exon 56278500 56279675 56278500 ID=Msa1296600-mRNA-1:exon:16108;Parent=Msa1296600-mRNA-1
chr8_3 five_prime_UTR 56279356 56279675 56279356 ID=Msa1296600-mRNA-1:five_prime_utr;Parent=Msa1296600-mRNA-1
chr8_3 CDS 56278500 56279355 56278500 ID=Msa1296600-mRNA-1:cds;Parent=Msa1296600-mRNA-1
chr8_3 CDS 56277224 56277594 56277224 ID=Msa1296600-mRNA-1:cds;Parent=Msa1296600-mRNA-1
chr8_3 three_prime_UTR 56276910 56277223 56276910 ID=Msa1296600-mRNA-1:three_prime_utr;Parent=Msa1296600-mRNA-1
Gene Sequence

>Msa1296600

ATGCTAATCTGTATGAATCTAGCGGCGGCAATTCCTCCAAACAGAATACGCATTTCCACTATCAATTCAGTTCAATCTCAAAATTCTCAATCATCGCCCATGGATCACCCGAAGAAAGTGGTTGTTTGCGGTGGCGGAGTTATCGGCGTTTGCACCGCTTACTTTCTCGCCAAGAAAGGTGCCTCCGTTACACTCATTGAGAAATCCACCATTGCTTGTGCCGCTTCCGGTAAAGCTGGTGGATTCCTAGCTTTAGATTGGTGTGACGGAGGCCCAATGGAACATCTCGCTCGTGCAAGCTTCAATCTCCACCGTTCACTGTCTCAAGAGCTTAACGGTCCACAATCATACGGTTATCGATCACTCACCGCTCTCAGCCTCACCGTAACTGAAGAATCAAAAACCACTGTTTCTTCCTCCTCGTCAGCTACTTTGCCGTCTTGGATTGATGGGCCGGCCCATGGGCCTAAAACAATTGGAACACATGAAACGACGGCGCAGGTGCACCCGCAAATGTTTACACGGACACTGATTGAGAACGCGGTGGAGAAGTACGGTGTGGAAATTGTGATTGGGAAATTGGAGAAGTTGGTGGTGGAAGGAGGAAAAGTTGAATCGGTGGTTCTAGAAGGTGGGGGTGTTGTGGATGCGGATGCGGTGGTTTTAGCATTGGGCCCTTGGTCTAGTAAATTGGAGTTGTTGAGCTCAAGGTTTAGAGTTTCTGGGCTTAAGGCCCATAGTATTGTTTTAGAGCCCAAAGAAGCTAATGCTATTACGCCACATGCTCTTTTTCTTAGCTACCGTGCCTCTAATCGAAGGACCCCTCTTGATCCAGAAGTGTACCCTCGGCCTACAGGGGAGGTGTATGTGTGTGGGATGTCAAAGGAGGAAGAGGTACCTGATGATCCAGAGGAGATACGGGGTAACGAAGAATCAATTGCGATGCTGAAGAGGGTAGCTAAGACCGTATCAAGCCATCTCGGGGAAGAAGGAGTGAAGGTGGAGCAAGCGTGCTTTTTGCCGTGTACTGATGATGGTGTGCCGATTATAGGAGAGATTCCTGGGGTGAAAGGTTGTTATGTAGCGACGGGACATAGTTGCTGGGGTATTCTCAATGGTCCTGCCACTGGAGCTGCTGTTGCTGAGCTTGTACTTGATGGTCATTCCACCATTGTTGATCTTAAACGGTTTAGTCCTGCTAGATTTGTTGGGCGTACCAAGGCTTAG
Protein sequence

>Msa1296600

MLICMNLAAAIPPNRIRISTINSVQSQNSQSSPMDHPKKVVVCGGGVIGVCTAYFLAKKGASVTLIEKSTIACAASGKAGGFLALDWCDGGPMEHLARASFNLHRSLSQELNGPQSYGYRSLTALSLTVTEESKTTVSSSSSATLPSWIDGPAHGPKTIGTHETTAQVHPQMFTRTLIENAVEKYGVEIVIGKLEKLVVEGGKVESVVLEGGGVVDADAVVLALGPWSSKLELLSSRFRVSGLKAHSIVLEPKEANAITPHALFLSYRASNRRTPLDPEVYPRPTGEVYVCGMSKEEEVPDDPEEIRGNEESIAMLKRVAKTVSSHLGEEGVKVEQACFLPCTDDGVPIIGEIPGVKGCYVATGHSCWGILNGPATGAAVAELVLDGHSTIVDLKRFSPARFVGRTKA*