Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657880 | XP_003629898.1 | 89.270 | 233 | 22 | 2 | 5 | 235 | 3 | 234 | 9.56e-134 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657880 | sp|F4I1G5|CRIM2_ARATH | 53.514 | 185 | 84 | 2 | 52 | 235 | 43 | 226 | 1.02e-61 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657880 | G7L817 | 89.270 | 233 | 22 | 2 | 5 | 235 | 3 | 234 | 4.57e-134 | 386 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000310 | Msa0657880 | 0.801476 | 8.845717e-49 | -8.615850e-47 |
| Msa0039780 | Msa0657880 | 0.827268 | 1.718336e-54 | -8.615850e-47 |
| Msa0044530 | Msa0657880 | 0.806091 | 9.731427e-50 | -8.615850e-47 |
| Msa0057270 | Msa0657880 | 0.840808 | 6.957326e-58 | -8.615850e-47 |
| Msa0087370 | Msa0657880 | 0.826213 | 3.069663e-54 | -8.615850e-47 |
| Msa0623480 | Msa0657880 | 0.801411 | 9.117864e-49 | -8.615850e-47 |
| Msa0639630 | Msa0657880 | 0.821910 | 3.139974e-53 | -8.615850e-47 |
| Msa0657880 | Msa0658920 | 0.826589 | 2.496770e-54 | -8.615850e-47 |
| Msa0657880 | Msa0701780 | 0.855389 | 6.518824e-62 | -8.615850e-47 |
| Msa0657880 | Msa0704350 | 0.825155 | 5.469810e-54 | -8.615850e-47 |
| Msa0657880 | Msa0704430 | 0.825770 | 3.911710e-54 | -8.615850e-47 |
| Msa0657880 | Msa0738680 | -0.809878 | 1.522270e-50 | -8.615850e-47 |
| Msa0657880 | Msa0819150 | -0.812864 | 3.421498e-51 | -8.615850e-47 |
| Msa0657880 | Msa1104020 | 0.804302 | 2.305997e-49 | -8.615850e-47 |
| Msa0657880 | Msa1352630 | 0.801319 | 9.521858e-49 | -8.615850e-47 |
| Msa0657880 | Msa1441610 | 0.810945 | 8.953181e-51 | -8.615850e-47 |
| Msa0657880 | Msa1458280 | 0.897908 | 8.900904e-77 | -8.615850e-47 |
| Msa0134120 | Msa0657880 | 0.821813 | 3.306544e-53 | -8.615850e-47 |
| Msa0141760 | Msa0657880 | 0.817629 | 2.985864e-52 | -8.615850e-47 |
| Msa0175240 | Msa0657880 | 0.830623 | 2.645748e-55 | -8.615850e-47 |
| Msa0373110 | Msa0657880 | 0.810638 | 1.043433e-50 | -8.615850e-47 |
| Msa0413590 | Msa0657880 | 0.843955 | 1.019321e-58 | -8.615850e-47 |
| Msa0421480 | Msa0657880 | 0.832422 | 9.541231e-56 | -8.615850e-47 |
| Msa0429500 | Msa0657880 | 0.807969 | 3.897692e-50 | -8.615850e-47 |
| Msa0458690 | Msa0657880 | 0.818821 | 1.604852e-52 | -8.615850e-47 |
| Msa0467480 | Msa0657880 | 0.820603 | 6.286347e-53 | -8.615850e-47 |
| Msa0524730 | Msa0657880 | 0.856982 | 2.224987e-62 | -8.615850e-47 |
| Msa0542330 | Msa0657880 | 0.825526 | 4.467432e-54 | -8.615850e-47 |
| Msa0565320 | Msa0657880 | 0.811583 | 6.511925e-51 | -8.615850e-47 |
| Msa0600500 | Msa0657880 | 0.819082 | 1.400135e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657880 | MtrunA17_Chr8g0380221 | 89.270 | 233 | 22 | 2 | 5 | 235 | 3 | 234 | 8.79e-138 | 386 |
| Msa0657880 | MtrunA17_Chr8g0374001 | 33.099 | 142 | 86 | 5 | 96 | 228 | 52 | 193 | 3.82e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657880 | AT1G29390.1 | 53.514 | 185 | 84 | 2 | 52 | 235 | 43 | 226 | 1.03e-62 | 196 |
| Msa0657880 | AT1G29390.2 | 53.977 | 176 | 71 | 2 | 70 | 235 | 8 | 183 | 4.23e-62 | 192 |
| Msa0657880 | AT1G29395.1 | 46.930 | 228 | 100 | 5 | 12 | 230 | 5 | 220 | 5.97e-62 | 194 |
| Msa0657880 | AT4G37220.1 | 32.653 | 147 | 90 | 5 | 91 | 228 | 45 | 191 | 1.36e-14 | 70.5 |
| Msa0657880 | AT3G50830.1 | 38.281 | 128 | 74 | 4 | 113 | 235 | 72 | 199 | 7.86e-14 | 68.6 |
Find 70 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTGTCCTGAGTTTAAC+TGG | 0.164153 | 4_3:-67835060 | Msa0657880:five_prime_UTR |
| TTTATTGATTGCGGTGTATT+TGG | 0.202554 | 4_3:-67832826 | Msa0657880:CDS |
| AATGGAACAATAAATGATTT+TGG | 0.211324 | 4_3:+67834324 | None:intergenic |
| GTCAGCATTCTTGGCACTTC+TGG | 0.222017 | 4_3:-67834050 | Msa0657880:CDS |
| TTGATTACAGTGTTAATCTT+AGG | 0.264565 | 4_3:-67835098 | Msa0657880:five_prime_UTR |
| GTTGGAATGTTGATATTATT+TGG | 0.278093 | 4_3:-67832636 | Msa0657880:three_prime_UTR |
| CGTCTCTTCTTTCATATTCC+AGG | 0.292869 | 4_3:-67834025 | Msa0657880:intron |
| AAATCCGTTGGTGGTAGTTT+TGG | 0.300811 | 4_3:+67834599 | None:intergenic |
| GTAGAGATCCACTGAATATT+AGG | 0.308778 | 4_3:+67834537 | None:intergenic |
| CTCATGAGGCTGTGAGATTA+AGG | 0.311797 | 4_3:-67832970 | Msa0657880:intron |
| ACCAAGAGTAACGCTATAAA+TGG | 0.318021 | 4_3:+67833004 | None:intergenic |
| CTGTTGTTCGGGTGCGGTTG+AGG | 0.353834 | 4_3:+67834815 | None:intergenic |
| TGGTGTGTGGTCAGCATTCT+TGG | 0.386108 | 4_3:-67834059 | Msa0657880:CDS |
| AGATCCTTCACTCGTCATTA+CGG | 0.405245 | 4_3:-67834642 | Msa0657880:CDS |
| TATTATGTTTGATACTCAAT+TGG | 0.424445 | 4_3:-67832599 | Msa0657880:three_prime_UTR |
| GGGGCTTGCAAAGCAAATAA+TGG | 0.425620 | 4_3:+67834306 | None:intergenic |
| CTCCTGTCCTGAGTTTAACT+GGG | 0.444167 | 4_3:-67835059 | Msa0657880:five_prime_UTR |
| TTAAATAATGGAGTTAGAAT+CGG | 0.451444 | 4_3:-67832561 | Msa0657880:three_prime_UTR |
| ATGATGATGGATCTGTTGTT+CGG | 0.455501 | 4_3:+67834803 | None:intergenic |
| CCTGAGGCATAGGGGATTGA+AGG | 0.457606 | 4_3:+67834750 | None:intergenic |
| TTGTTGCTTCTCATCTGAGT+TGG | 0.458098 | 4_3:-67832708 | Msa0657880:exon |
| ATTAGGAGTAGTGAAAGGAT+AGG | 0.461661 | 4_3:+67834554 | None:intergenic |
| GAAAGGATAGGGAGCGTAAG+AGG | 0.461907 | 4_3:+67834566 | None:intergenic |
| TGATGATGGATCTGTTGTTC+GGG | 0.465818 | 4_3:+67834804 | None:intergenic |
| TGGACATACAGAGGTAGATA+TGG | 0.467160 | 4_3:-67834079 | Msa0657880:intron |
| ACATTTCTCAAGAACAAGCT+TGG | 0.467961 | 4_3:-67832796 | Msa0657880:CDS |
| GCCATTTATAGCGTTACTCT+TGG | 0.480930 | 4_3:-67833005 | Msa0657880:CDS |
| CCTTCAATCCCCTATGCCTC+AGG | 0.483755 | 4_3:-67834750 | Msa0657880:intron |
| TTCAATTGTTTCCACCTTAG+CGG | 0.484293 | 4_3:-67832754 | Msa0657880:CDS |
| TACCAGGTACCTGAGGCATA+GGG | 0.493016 | 4_3:+67834741 | None:intergenic |
| TTAGGAGTAGTGAAAGGATA+GGG | 0.507367 | 4_3:+67834555 | None:intergenic |
| ATCAATGACGTACTTTATCC+AGG | 0.509966 | 4_3:+67834269 | None:intergenic |
| ATGGATCTGTTGTTCGGGTG+CGG | 0.525574 | 4_3:+67834809 | None:intergenic |
| TGCATTTACAGTTGAAGTTG+AGG | 0.526115 | 4_3:+67834858 | None:intergenic |
| GTACCAGGTACCTGAGGCAT+AGG | 0.529583 | 4_3:+67834740 | None:intergenic |
| CGTGATTTCTTTATTGATTG+CGG | 0.531142 | 4_3:-67832835 | Msa0657880:CDS |
| GTTTCCACCTTAGCGGTCAT+CGG | 0.533114 | 4_3:-67832747 | Msa0657880:CDS |
| GAGAAGGAGAGCGATGATGA+TGG | 0.542559 | 4_3:+67834790 | None:intergenic |
| CGCAATCAATAAAGAAATCA+CGG | 0.554346 | 4_3:+67832836 | None:intergenic |
| TATTCCGTAATGACGAGTGA+AGG | 0.557475 | 4_3:+67834638 | None:intergenic |
| ACTGGGGTAGAGTCATCAAA+TGG | 0.561432 | 4_3:-67835042 | Msa0657880:five_prime_UTR |
| GCGAGTGCGAGGGTGAGAGA+AGG | 0.562288 | 4_3:+67834774 | None:intergenic |
| GGATTGAAGGTGCGAGTGCG+AGG | 0.574816 | 4_3:+67834763 | None:intergenic |
| TAATCTTAGGAGTTTGAGAG+TGG | 0.576588 | 4_3:-67835085 | Msa0657880:five_prime_UTR |
| TCACTACTCCTAATATTCAG+TGG | 0.580865 | 4_3:-67834545 | Msa0657880:CDS |
| GAACTCCACCTCTGACATGA+GGG | 0.584088 | 4_3:-67832464 | Msa0657880:three_prime_UTR |
| GATTGAAGGTGCGAGTGCGA+GGG | 0.588182 | 4_3:+67834764 | None:intergenic |
| ACCCCAGTTAAACTCAGGAC+AGG | 0.590921 | 4_3:+67835057 | None:intergenic |
| TTTGCCAGGGACACAAAAGA+AGG | 0.594762 | 4_3:-67832861 | Msa0657880:intron |
| GATACCGATGACCGCTAAGG+TGG | 0.607165 | 4_3:+67832743 | None:intergenic |
| CTTAATCTCACAGCCTCATG+AGG | 0.615359 | 4_3:+67832971 | None:intergenic |
| AAGAACCCTCATGTCAGAGG+TGG | 0.617947 | 4_3:+67832459 | None:intergenic |
| GGAAAACACACGAAATCCGT+TGG | 0.618951 | 4_3:+67834587 | None:intergenic |
| GCAAAGAACCCTCATGTCAG+AGG | 0.621006 | 4_3:+67832456 | None:intergenic |
| TTGGAGAAATCATTTGACCA+AGG | 0.622670 | 4_3:-67832777 | Msa0657880:CDS |
| AAGTCCAAAACTACCACCAA+CGG | 0.628404 | 4_3:-67834603 | Msa0657880:CDS |
| AATCTTAGGAGTTTGAGAGT+GGG | 0.628845 | 4_3:-67835084 | Msa0657880:five_prime_UTR |
| CTGGAATATGAAAGAAGAGA+CGG | 0.630891 | 4_3:+67834026 | None:intergenic |
| AGAACTCCACCTCTGACATG+AGG | 0.635733 | 4_3:-67832465 | Msa0657880:three_prime_UTR |
| AGTGATACCGATGACCGCTA+AGG | 0.637419 | 4_3:+67832740 | None:intergenic |
| AAACACACGAAATCCGTTGG+TGG | 0.638061 | 4_3:+67834590 | None:intergenic |
| TGAATATTAGGAGTAGTGAA+AGG | 0.638291 | 4_3:+67834549 | None:intergenic |
| TCCTGTCCTGAGTTTAACTG+GGG | 0.641955 | 4_3:-67835058 | Msa0657880:five_prime_UTR |
| AACTCAGATGAGAAGCAACA+AGG | 0.646149 | 4_3:+67832710 | None:intergenic |
| AGGTGGAAACAATTGAACCT+TGG | 0.646271 | 4_3:+67832760 | None:intergenic |
| ACTCTACCCCAGTTAAACTC+AGG | 0.647035 | 4_3:+67835052 | None:intergenic |
| CCAGTTAAACTCAGGACAGG+AGG | 0.659845 | 4_3:+67835060 | None:intergenic |
| ACCAGGTACCTGAGGCATAG+GGG | 0.660783 | 4_3:+67834742 | None:intergenic |
| GGTGATTGTAGCTCCTCATG+AGG | 0.668319 | 4_3:-67832984 | Msa0657880:CDS |
| ACAGAGGTAGATATGGTGTG+TGG | 0.705598 | 4_3:-67834072 | Msa0657880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTAGATCAATAAA+AGG | + | chr4_3:67833403-67833422 | None:intergenic | 10.0% |
| !!! | TATTCTTTTTGAATATTAAT+TGG | - | chr4_3:67834429-67834448 | Msa0657880:intron | 10.0% |
| !! | TAAATAAAAATAATACATGT+TGG | - | chr4_3:67834856-67834875 | Msa0657880:CDS | 10.0% |
| !!! | TCTAATTATTTTACACAAAT+TGG | - | chr4_3:67833411-67833430 | Msa0657880:intron | 15.0% |
| !!! | AGAATATAATTATGGATTAT+TGG | + | chr4_3:67834002-67834021 | None:intergenic | 15.0% |
| !! | TAAACATGAGAATATAATTA+TGG | + | chr4_3:67834010-67834029 | None:intergenic | 15.0% |
| !!! | TTTTTTCTCATACAAAAATT+CGG | - | chr4_3:67834073-67834092 | Msa0657880:intron | 15.0% |
| !! | TGTAAACAAATTCTTAAAAT+TGG | - | chr4_3:67834099-67834118 | Msa0657880:intron | 15.0% |
| !! | TATTCAAAAAGAATAAAGAA+CGG | + | chr4_3:67834424-67834443 | None:intergenic | 15.0% |
| !! | AAAAAAGATAAAATTTCTTC+CGG | - | chr4_3:67834452-67834471 | Msa0657880:intron | 15.0% |
| !!! | CTTTTTACTTACTTAAATAA+TGG | - | chr4_3:67834937-67834956 | Msa0657880:five_prime_UTR | 15.0% |
| !! | TAATAATTAAATTGAGAGAG+AGG | + | chr4_3:67833018-67833037 | None:intergenic | 20.0% |
| !! | CTCTCTCAATTTAATTATTA+TGG | - | chr4_3:67833018-67833037 | Msa0657880:CDS | 20.0% |
| !! | ATGAATATTCAAAATCTTGT+AGG | - | chr4_3:67833133-67833152 | Msa0657880:intron | 20.0% |
| !! | TGAATATTCAAAATCTTGTA+GGG | - | chr4_3:67833134-67833153 | Msa0657880:intron | 20.0% |
| !!! | AATGGAACAATAAATGATTT+TGG | + | chr4_3:67833189-67833208 | None:intergenic | 20.0% |
| !!! | GAGAAGATTTAGATTTTAAA+TGG | + | chr4_3:67833781-67833800 | None:intergenic | 20.0% |
| !! | TAAAATCTAAATCTTCTCAA+TGG | - | chr4_3:67833783-67833802 | Msa0657880:intron | 20.0% |
| !! | TATTGTTTACTTCTAACTAT+TGG | - | chr4_3:67833813-67833832 | Msa0657880:intron | 20.0% |
| !! | ATTTCTTAGAAAGAAATGTA+GGG | + | chr4_3:67833950-67833969 | None:intergenic | 20.0% |
| !! | AATTTCTTAGAAAGAAATGT+AGG | + | chr4_3:67833951-67833970 | None:intergenic | 20.0% |
| !! | TTTGTATGAGAAAAAATGTT+TGG | + | chr4_3:67834069-67834088 | None:intergenic | 20.0% |
| !! | CAAAATGAAAAGGAAATAAA+CGG | + | chr4_3:67834201-67834220 | None:intergenic | 20.0% |
| !! | TATTATGTTTGATACTCAAT+TGG | - | chr4_3:67834911-67834930 | Msa0657880:exon | 20.0% |
| !!! | TTAAATAATGGAGTTAGAAT+CGG | - | chr4_3:67834949-67834968 | Msa0657880:five_prime_UTR | 20.0% |
| ! | TTGATTACAGTGTTAATCTT+AGG | - | chr4_3:67832412-67832431 | Msa0657880:three_prime_UTR | 25.0% |
| ! | AAGAGAATAACACTTATTCT+TGG | + | chr4_3:67833360-67833379 | None:intergenic | 25.0% |
| ! | TGTATAAGAGAATATATACC+TGG | + | chr4_3:67833506-67833525 | None:intergenic | 25.0% |
| ! | ATGAAATTTAGGAATCTTGA+GGG | - | chr4_3:67833544-67833563 | Msa0657880:intron | 25.0% |
| !!! | GTTTTCACCACTTTTAATAA+AGG | + | chr4_3:67833610-67833629 | None:intergenic | 25.0% |
| !!! | GAAAACCAACATTTTGTTTT+AGG | - | chr4_3:67833624-67833643 | Msa0657880:intron | 25.0% |
| !! | TTCCTTTTCATTTTGTACAA+TGG | - | chr4_3:67834206-67834225 | Msa0657880:intron | 25.0% |
| ! | ATCCATTGTACAAAATGAAA+AGG | + | chr4_3:67834211-67834230 | None:intergenic | 25.0% |
| ! | TCAATAGTAACACATAGTTT+GGG | + | chr4_3:67834242-67834261 | None:intergenic | 25.0% |
| ! | TGTGGAGTGTATTAATATAA+GGG | - | chr4_3:67834274-67834293 | Msa0657880:intron | 25.0% |
| ! | ATATTAATACACTCCACATA+TGG | + | chr4_3:67834352-67834371 | None:intergenic | 25.0% |
| ! | ATGTGGAGTGTATTAATATA+AGG | - | chr4_3:67834353-67834372 | Msa0657880:CDS | 25.0% |
| ! | TGTGGAGTGTATTAATATAA+GGG | - | chr4_3:67834274-67834293 | Msa0657880:intron | 25.0% |
| !! | GTAAGCAAATTCATGTTTTT+GGG | - | chr4_3:67834562-67834581 | Msa0657880:CDS | 25.0% |
| !!! | TAAGCAAATTCATGTTTTTG+GGG | - | chr4_3:67834563-67834582 | Msa0657880:CDS | 25.0% |
| ! | GTTGGAATGTTGATATTATT+TGG | - | chr4_3:67834874-67834893 | Msa0657880:CDS | 25.0% |
| AAAAGAGTAGATGAGAATGT+AGG | + | chr4_3:67832795-67832814 | None:intergenic | 30.0% | |
| ATCAGAGAGAGGAAATAAAA+AGG | + | chr4_3:67832822-67832841 | None:intergenic | 30.0% | |
| TGAATATTAGGAGTAGTGAA+AGG | + | chr4_3:67832964-67832983 | None:intergenic | 30.0% | |
| CATAAATGAAGAACGAAAGA+CGG | + | chr4_3:67833094-67833113 | None:intergenic | 30.0% | |
| !! | ATCTTGTAGGGTTTTAATAC+TGG | - | chr4_3:67833146-67833165 | Msa0657880:intron | 30.0% |
| GAACAAGAAAACAGAATACA+AGG | + | chr4_3:67833267-67833286 | None:intergenic | 30.0% | |
| CATGAAATTTAGGAATCTTG+AGG | - | chr4_3:67833543-67833562 | Msa0657880:intron | 30.0% | |
| TGAAATTTAGGAATCTTGAG+GGG | - | chr4_3:67833545-67833564 | Msa0657880:intron | 30.0% | |
| TAAATCTCAACAACACCATA+TGG | - | chr4_3:67833584-67833603 | Msa0657880:intron | 30.0% | |
| ! | CACTTTTAATAAAGGCCATA+TGG | + | chr4_3:67833602-67833621 | None:intergenic | 30.0% |
| CATATGGCCTTTATTAAAAG+TGG | - | chr4_3:67833600-67833619 | Msa0657880:intron | 30.0% | |
| AGGTTCCTAAAACAAAATGT+TGG | + | chr4_3:67833632-67833651 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTTTAGGAACCTCA+GGG | - | chr4_3:67833634-67833653 | Msa0657880:intron | 30.0% |
| GAAAAGTAAAAACTGCAAAG+TGG | - | chr4_3:67833688-67833707 | Msa0657880:intron | 30.0% | |
| TGTAATGAGAAAACTTGTAC+AGG | + | chr4_3:67833869-67833888 | None:intergenic | 30.0% | |
| AATGAAAAGGAAATAAACGG+AGG | + | chr4_3:67834198-67834217 | None:intergenic | 30.0% | |
| ! | AACACATAGTTTGGGTATTT+TGG | + | chr4_3:67834234-67834253 | None:intergenic | 30.0% |
| GTCAATAGTAACACATAGTT+TGG | + | chr4_3:67834243-67834262 | None:intergenic | 30.0% | |
| ATATTAATACACTCCACAGT+TGG | + | chr4_3:67834272-67834291 | None:intergenic | 30.0% | |
| CTGTGGAGTGTATTAATATA+AGG | - | chr4_3:67834273-67834292 | Msa0657880:intron | 30.0% | |
| GTGGAGTGTATTAATATAAG+GGG | - | chr4_3:67834275-67834294 | Msa0657880:intron | 30.0% | |
| ! | GGTAAGCAAATTCATGTTTT+TGG | - | chr4_3:67834561-67834580 | Msa0657880:CDS | 30.0% |
| ! | TAAATAGGGTAAGTTGACAA+CGG | + | chr4_3:67834597-67834616 | None:intergenic | 30.0% |
| CGCAATCAATAAAGAAATCA+CGG | + | chr4_3:67834677-67834696 | None:intergenic | 30.0% | |
| ! | CGTGATTTCTTTATTGATTG+CGG | - | chr4_3:67834675-67834694 | Msa0657880:intron | 30.0% |
| ! | TTTATTGATTGCGGTGTATT+TGG | - | chr4_3:67834684-67834703 | Msa0657880:intron | 30.0% |
| TAATCTTAGGAGTTTGAGAG+TGG | - | chr4_3:67832425-67832444 | Msa0657880:three_prime_UTR | 35.0% | |
| AATCTTAGGAGTTTGAGAGT+GGG | - | chr4_3:67832426-67832445 | Msa0657880:three_prime_UTR | 35.0% | |
| TCATCATCATCATCATCGTT+AGG | - | chr4_3:67832612-67832631 | Msa0657880:three_prime_UTR | 35.0% | |
| CATCATCATCATCATCGTTA+GGG | - | chr4_3:67832613-67832632 | Msa0657880:three_prime_UTR | 35.0% | |
| TGCATTTACAGTTGAAGTTG+AGG | + | chr4_3:67832655-67832674 | None:intergenic | 35.0% | |
| !! | ATGATGATGGATCTGTTGTT+CGG | + | chr4_3:67832710-67832729 | None:intergenic | 35.0% |
| TTAGGAGTAGTGAAAGGATA+GGG | + | chr4_3:67832958-67832977 | None:intergenic | 35.0% | |
| ATTAGGAGTAGTGAAAGGAT+AGG | + | chr4_3:67832959-67832978 | None:intergenic | 35.0% | |
| TCACTACTCCTAATATTCAG+TGG | - | chr4_3:67832965-67832984 | Msa0657880:intron | 35.0% | |
| GTAGAGATCCACTGAATATT+AGG | + | chr4_3:67832976-67832995 | None:intergenic | 35.0% | |
| TCATCAGCACATAACAGATT+TGG | + | chr4_3:67833117-67833136 | None:intergenic | 35.0% | |
| !! | TAGGGTTTTAATACTGGCAA+AGG | - | chr4_3:67833152-67833171 | Msa0657880:intron | 35.0% |
| !! | AGGGTTTTAATACTGGCAAA+GGG | - | chr4_3:67833153-67833172 | Msa0657880:intron | 35.0% |
| ATCAATGACGTACTTTATCC+AGG | + | chr4_3:67833244-67833263 | None:intergenic | 35.0% | |
| TACACAAATTGGACATACAG+AGG | - | chr4_3:67833422-67833441 | Msa0657880:intron | 35.0% | |
| CTGGAATATGAAAGAAGAGA+CGG | + | chr4_3:67833487-67833506 | None:intergenic | 35.0% | |
| GAAATTTAGGAATCTTGAGG+GGG | - | chr4_3:67833546-67833565 | Msa0657880:intron | 35.0% | |
| !!! | CATTTTGTTTTAGGAACCTC+AGG | - | chr4_3:67833633-67833652 | Msa0657880:intron | 35.0% |
| ! | TAGCATAAGCCTTTTATGCT+AGG | - | chr4_3:67833714-67833733 | Msa0657880:intron | 35.0% |
| ! | TCTACTCTCTTTTCCACAAT+AGG | - | chr4_3:67833917-67833936 | Msa0657880:intron | 35.0% |
| !!! | AGGAGTGTTTCAAGTGTTTT+AGG | + | chr4_3:67834140-67834159 | None:intergenic | 35.0% |
| TAAAACACTTGAAACACTCC+TGG | - | chr4_3:67834139-67834158 | Msa0657880:intron | 35.0% | |
| GTATTAATATAAGGGCAACC+CGG | - | chr4_3:67834282-67834301 | Msa0657880:CDS | 35.0% | |
| TAATACACTCCACATATGGT+GGG | + | chr4_3:67834348-67834367 | None:intergenic | 35.0% | |
| TTAATACACTCCACATATGG+TGG | + | chr4_3:67834349-67834368 | None:intergenic | 35.0% | |
| ATTAATATAAGGGGCAACTG+TGG | - | chr4_3:67834364-67834383 | Msa0657880:intron | 35.0% | |
| ACCTGGAATCAAAGAATATC+CGG | + | chr4_3:67834474-67834493 | None:intergenic | 35.0% | |
| ACCAAGAGTAACGCTATAAA+TGG | + | chr4_3:67834509-67834528 | None:intergenic | 35.0% | |
| ACATTTCTCAAGAACAAGCT+TGG | - | chr4_3:67834714-67834733 | Msa0657880:intron | 35.0% | |
| TTGGAGAAATCATTTGACCA+AGG | - | chr4_3:67834733-67834752 | Msa0657880:intron | 35.0% | |
| TTCAATTGTTTCCACCTTAG+CGG | - | chr4_3:67834756-67834775 | Msa0657880:CDS | 35.0% | |
| !! | TGATGATGGATCTGTTGTTC+GGG | + | chr4_3:67832709-67832728 | None:intergenic | 40.0% |
| TAGATGAGAATGTAGGTACC+AGG | + | chr4_3:67832788-67832807 | None:intergenic | 40.0% | |
| ! | CTGATCGTGTTTCTGTTGTT+TGG | - | chr4_3:67832837-67832856 | Msa0657880:CDS | 40.0% |
| AGATCCTTCACTCGTCATTA+CGG | - | chr4_3:67832868-67832887 | Msa0657880:intron | 40.0% | |
| TATTCCGTAATGACGAGTGA+AGG | + | chr4_3:67832875-67832894 | None:intergenic | 40.0% | |
| AAGTCCAAAACTACCACCAA+CGG | - | chr4_3:67832907-67832926 | Msa0657880:intron | 40.0% | |
| !!! | AAATCCGTTGGTGGTAGTTT+TGG | + | chr4_3:67832914-67832933 | None:intergenic | 40.0% |
| TGGACATACAGAGGTAGATA+TGG | - | chr4_3:67833431-67833450 | Msa0657880:intron | 40.0% | |
| CGTCTCTTCTTTCATATTCC+AGG | - | chr4_3:67833485-67833504 | Msa0657880:intron | 40.0% | |
| ! | ATAAGCCTTTTATGCTAGGC+AGG | - | chr4_3:67833718-67833737 | Msa0657880:intron | 40.0% |
| ! | TAAGCCTTTTATGCTAGGCA+GGG | - | chr4_3:67833719-67833738 | Msa0657880:intron | 40.0% |
| TAATCCCTGCCTAGCATAAA+AGG | + | chr4_3:67833726-67833745 | None:intergenic | 40.0% | |
| ! | AGTGAAAAGAGTGCATCAGA+TGG | + | chr4_3:67833842-67833861 | None:intergenic | 40.0% |
| TCCGGATATTCTTTGATTCC+AGG | - | chr4_3:67834470-67834489 | Msa0657880:intron | 40.0% | |
| GCCATTTATAGCGTTACTCT+TGG | - | chr4_3:67834505-67834524 | Msa0657880:intron | 40.0% | |
| ! | GTAAGTTGACAACGGTTCAA+AGG | + | chr4_3:67834589-67834608 | None:intergenic | 40.0% |
| ACATCGTTATTCTCTTTGCC+AGG | - | chr4_3:67834635-67834654 | Msa0657880:CDS | 40.0% | |
| CATCGTTATTCTCTTTGCCA+GGG | - | chr4_3:67834636-67834655 | Msa0657880:CDS | 40.0% | |
| AGGTGGAAACAATTGAACCT+TGG | + | chr4_3:67834753-67834772 | None:intergenic | 40.0% | |
| AACTCAGATGAGAAGCAACA+AGG | + | chr4_3:67834803-67834822 | None:intergenic | 40.0% | |
| ! | TTGTTGCTTCTCATCTGAGT+TGG | - | chr4_3:67834802-67834821 | Msa0657880:CDS | 40.0% |
| CTCCTGTCCTGAGTTTAACT+GGG | - | chr4_3:67832451-67832470 | Msa0657880:three_prime_UTR | 45.0% | |
| TCCTGTCCTGAGTTTAACTG+GGG | - | chr4_3:67832452-67832471 | Msa0657880:three_prime_UTR | 45.0% | |
| ACTCTACCCCAGTTAAACTC+AGG | + | chr4_3:67832461-67832480 | None:intergenic | 45.0% | |
| ACTGGGGTAGAGTCATCAAA+TGG | - | chr4_3:67832468-67832487 | Msa0657880:three_prime_UTR | 45.0% | |
| ACAGAAACACGATCAGAGAG+AGG | + | chr4_3:67832833-67832852 | None:intergenic | 45.0% | |
| !!! | GGTGGTAGTTTTGGACTTGT+CGG | + | chr4_3:67832905-67832924 | None:intergenic | 45.0% |
| AAACACACGAAATCCGTTGG+TGG | + | chr4_3:67832923-67832942 | None:intergenic | 45.0% | |
| GGAAAACACACGAAATCCGT+TGG | + | chr4_3:67832926-67832945 | None:intergenic | 45.0% | |
| GGGGCTTGCAAAGCAAATAA+TGG | + | chr4_3:67833207-67833226 | None:intergenic | 45.0% | |
| TCCAGGAAAAAACAGCTGCA+GGG | + | chr4_3:67833227-67833246 | None:intergenic | 45.0% | |
| ATCCAGGAAAAAACAGCTGC+AGG | + | chr4_3:67833228-67833247 | None:intergenic | 45.0% | |
| ACAGAGGTAGATATGGTGTG+TGG | - | chr4_3:67833438-67833457 | Msa0657880:intron | 45.0% | |
| CGCATGAGCGCATGAAATTT+AGG | - | chr4_3:67833533-67833552 | Msa0657880:intron | 45.0% | |
| GAATCTTGAGGGGGTAACAA+TGG | - | chr4_3:67833555-67833574 | Msa0657880:intron | 45.0% | |
| TAGAATCAGTATGTGCCCTG+AGG | + | chr4_3:67833652-67833671 | None:intergenic | 45.0% | |
| TCAAGTGAGATGGATGAACC+AGG | + | chr4_3:67834160-67834179 | None:intergenic | 45.0% | |
| TCCATCTCACTTGATTCCCA+TGG | - | chr4_3:67834166-67834185 | Msa0657880:intron | 45.0% | |
| ACCATGGGAATCAAGTGAGA+TGG | + | chr4_3:67834170-67834189 | None:intergenic | 45.0% | |
| ! | TAAACGGAGGTGCAAACCAT+GGG | + | chr4_3:67834185-67834204 | None:intergenic | 45.0% |
| ! | ATAAACGGAGGTGCAAACCA+TGG | + | chr4_3:67834186-67834205 | None:intergenic | 45.0% |
| ! | TATTGACTGCAAGCCAACTG+TGG | - | chr4_3:67834256-67834275 | Msa0657880:intron | 45.0% |
| AATGGCAACTCAAGTTCACC+TGG | + | chr4_3:67834491-67834510 | None:intergenic | 45.0% | |
| CTTAATCTCACAGCCTCATG+AGG | + | chr4_3:67834542-67834561 | None:intergenic | 45.0% | |
| CTCATGAGGCTGTGAGATTA+AGG | - | chr4_3:67834540-67834559 | Msa0657880:CDS | 45.0% | |
| TTTGCCAGGGACACAAAAGA+AGG | - | chr4_3:67834649-67834668 | Msa0657880:intron | 45.0% | |
| !!! | GTTTTTTATTTTAATAAATA+GGG | + | chr4_3:67834611-67834630 | None:intergenic | 5.0% |
| !!! | AGTTTTTTATTTTAATAAAT+AGG | + | chr4_3:67834612-67834631 | None:intergenic | 5.0% |
| CCAGTTAAACTCAGGACAGG+AGG | + | chr4_3:67832453-67832472 | None:intergenic | 50.0% | |
| CCTCCTGTCCTGAGTTTAAC+TGG | - | chr4_3:67832450-67832469 | Msa0657880:three_prime_UTR | 50.0% | |
| ACCCCAGTTAAACTCAGGAC+AGG | + | chr4_3:67832456-67832475 | None:intergenic | 50.0% | |
| ATGGATCTGTTGTTCGGGTG+CGG | + | chr4_3:67832704-67832723 | None:intergenic | 50.0% | |
| GAGAAGGAGAGCGATGATGA+TGG | + | chr4_3:67832723-67832742 | None:intergenic | 50.0% | |
| TACCAGGTACCTGAGGCATA+GGG | + | chr4_3:67832772-67832791 | None:intergenic | 50.0% | |
| ATGTAGGTACCAGGTACCTG+AGG | + | chr4_3:67832779-67832798 | None:intergenic | 50.0% | |
| ! | GAAAGGATAGGGAGCGTAAG+AGG | + | chr4_3:67832947-67832966 | None:intergenic | 50.0% |
| CCAGGAAAAAACAGCTGCAG+GGG | + | chr4_3:67833226-67833245 | None:intergenic | 50.0% | |
| TGGTGTGTGGTCAGCATTCT+TGG | - | chr4_3:67833451-67833470 | Msa0657880:intron | 50.0% | |
| GTCAGCATTCTTGGCACTTC+TGG | - | chr4_3:67833460-67833479 | Msa0657880:intron | 50.0% | |
| ! | ATGTGGGAGCTTTAGTGCAC+CGG | + | chr4_3:67834304-67834323 | None:intergenic | 50.0% |
| ACTAAAGCTCCCACATACGC+AGG | - | chr4_3:67834308-67834327 | Msa0657880:CDS | 50.0% | |
| CTAAAGCTCCCACATACGCA+GGG | - | chr4_3:67834309-67834328 | Msa0657880:CDS | 50.0% | |
| GGTGATTGTAGCTCCTCATG+AGG | - | chr4_3:67834526-67834545 | Msa0657880:CDS | 50.0% | |
| GTTTCCACCTTAGCGGTCAT+CGG | - | chr4_3:67834763-67834782 | Msa0657880:CDS | 50.0% | |
| AGTGATACCGATGACCGCTA+AGG | + | chr4_3:67834773-67834792 | None:intergenic | 50.0% | |
| AGAACTCCACCTCTGACATG+AGG | - | chr4_3:67835045-67835064 | Msa0657880:five_prime_UTR | 50.0% | |
| GAACTCCACCTCTGACATGA+GGG | - | chr4_3:67835046-67835065 | Msa0657880:five_prime_UTR | 50.0% | |
| AAGAACCCTCATGTCAGAGG+TGG | + | chr4_3:67835054-67835073 | None:intergenic | 50.0% | |
| GCAAAGAACCCTCATGTCAG+AGG | + | chr4_3:67835057-67835076 | None:intergenic | 50.0% | |
| ! | GATTGAAGGTGCGAGTGCGA+GGG | + | chr4_3:67832749-67832768 | None:intergenic | 55.0% |
| CCTGAGGCATAGGGGATTGA+AGG | + | chr4_3:67832763-67832782 | None:intergenic | 55.0% | |
| CCTTCAATCCCCTATGCCTC+AGG | - | chr4_3:67832760-67832779 | Msa0657880:CDS | 55.0% | |
| ACCAGGTACCTGAGGCATAG+GGG | + | chr4_3:67832771-67832790 | None:intergenic | 55.0% | |
| GTACCAGGTACCTGAGGCAT+AGG | + | chr4_3:67832773-67832792 | None:intergenic | 55.0% | |
| !!! | CCCCTGCAGCTGTTTTTTCC+TGG | - | chr4_3:67833223-67833242 | Msa0657880:intron | 55.0% |
| GTAGGGTGACGCACCTATTG+TGG | + | chr4_3:67833933-67833952 | None:intergenic | 55.0% | |
| ! | TGTGGGAGCTTTAGTGCACC+GGG | + | chr4_3:67834303-67834322 | None:intergenic | 55.0% |
| ! | CATATGGTGGGACCTCTTCC+CGG | + | chr4_3:67834336-67834355 | None:intergenic | 55.0% |
| GGAAGAGGTCCCACCATATG+TGG | - | chr4_3:67834336-67834355 | Msa0657880:CDS | 55.0% | |
| ! | GGCACCTTCTTTTGTGTCCC+TGG | + | chr4_3:67834656-67834675 | None:intergenic | 55.0% |
| GATACCGATGACCGCTAAGG+TGG | + | chr4_3:67834770-67834789 | None:intergenic | 55.0% | |
| CTGTTGTTCGGGTGCGGTTG+AGG | + | chr4_3:67832698-67832717 | None:intergenic | 60.0% | |
| ! | GGATTGAAGGTGCGAGTGCG+AGG | + | chr4_3:67832750-67832769 | None:intergenic | 60.0% |
| TCCCCTATGCCTCAGGTACC+TGG | - | chr4_3:67832767-67832786 | Msa0657880:CDS | 60.0% | |
| TTCCCGGACCCTGCGTATGT+GGG | + | chr4_3:67834320-67834339 | None:intergenic | 60.0% | |
| GCGAGTGCGAGGGTGAGAGA+AGG | + | chr4_3:67832739-67832758 | None:intergenic | 65.0% | |
| GCTCCCACATACGCAGGGTC+CGG | - | chr4_3:67834314-67834333 | Msa0657880:CDS | 65.0% | |
| CTCCCACATACGCAGGGTCC+GGG | - | chr4_3:67834315-67834334 | Msa0657880:CDS | 65.0% | |
| CTTCCCGGACCCTGCGTATG+TGG | + | chr4_3:67834321-67834340 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+AGG | - | chr4_3:67834321-67834340 | Msa0657880:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 67832411 | 67835121 | 67832411 | ID=Msa0657880;Name=Msa0657880 |
| chr4_3 | mRNA | 67832411 | 67835121 | 67832411 | ID=Msa0657880-mRNA-1;Parent=Msa0657880;Name=Msa0657880-mRNA-1;_AED=0.13;_eAED=0.13;_QI=175|1|1|1|0.83|0.71|7|302|235 |
| chr4_3 | exon | 67832411 | 67832875 | 67832411 | ID=Msa0657880-mRNA-1:exon:19585;Parent=Msa0657880-mRNA-1 |
| chr4_3 | exon | 67832971 | 67833040 | 67832971 | ID=Msa0657880-mRNA-1:exon:19584;Parent=Msa0657880-mRNA-1 |
| chr4_3 | exon | 67834026 | 67834090 | 67834026 | ID=Msa0657880-mRNA-1:exon:19583;Parent=Msa0657880-mRNA-1 |
| chr4_3 | exon | 67834282 | 67834377 | 67834282 | ID=Msa0657880-mRNA-1:exon:19582;Parent=Msa0657880-mRNA-1 |
| chr4_3 | exon | 67834525 | 67834662 | 67834525 | ID=Msa0657880-mRNA-1:exon:19581;Parent=Msa0657880-mRNA-1 |
| chr4_3 | exon | 67834751 | 67835008 | 67834751 | ID=Msa0657880-mRNA-1:exon:19580;Parent=Msa0657880-mRNA-1 |
| chr4_3 | exon | 67835029 | 67835121 | 67835029 | ID=Msa0657880-mRNA-1:exon:19579;Parent=Msa0657880-mRNA-1 |
| chr4_3 | five_prime_UTR | 67835029 | 67835121 | 67835029 | ID=Msa0657880-mRNA-1:five_prime_utr;Parent=Msa0657880-mRNA-1 |
| chr4_3 | five_prime_UTR | 67834927 | 67835008 | 67834927 | ID=Msa0657880-mRNA-1:five_prime_utr;Parent=Msa0657880-mRNA-1 |
| chr4_3 | CDS | 67834751 | 67834926 | 67834751 | ID=Msa0657880-mRNA-1:cds;Parent=Msa0657880-mRNA-1 |
| chr4_3 | CDS | 67834525 | 67834662 | 67834525 | ID=Msa0657880-mRNA-1:cds;Parent=Msa0657880-mRNA-1 |
| chr4_3 | CDS | 67834282 | 67834377 | 67834282 | ID=Msa0657880-mRNA-1:cds;Parent=Msa0657880-mRNA-1 |
| chr4_3 | CDS | 67834026 | 67834090 | 67834026 | ID=Msa0657880-mRNA-1:cds;Parent=Msa0657880-mRNA-1 |
| chr4_3 | CDS | 67832971 | 67833040 | 67832971 | ID=Msa0657880-mRNA-1:cds;Parent=Msa0657880-mRNA-1 |
| chr4_3 | CDS | 67832713 | 67832875 | 67832713 | ID=Msa0657880-mRNA-1:cds;Parent=Msa0657880-mRNA-1 |
| chr4_3 | three_prime_UTR | 67832411 | 67832712 | 67832411 | ID=Msa0657880-mRNA-1:three_prime_utr;Parent=Msa0657880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
