Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000310 | XP_013457459.1 | 94.363 | 408 | 21 | 1 | 1 | 408 | 1 | 406 | 0.0 | 727 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000310 | sp|Q10058|YAM3_SCHPO | 31.910 | 398 | 218 | 14 | 34 | 399 | 1 | 377 | 1.68e-50 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000310 | Msa0005500 | 0.813410 | 2.595845e-51 | -8.615850e-47 |
| Msa0000310 | Msa0014970 | 0.804277 | 2.333717e-49 | -8.615850e-47 |
| Msa0000310 | Msa0018010 | 0.812843 | 3.457036e-51 | -8.615850e-47 |
| Msa0000310 | Msa0022230 | 0.800088 | 1.698338e-48 | -8.615850e-47 |
| Msa0000310 | Msa0032990 | 0.804180 | 2.445118e-49 | -8.615850e-47 |
| Msa0000310 | Msa0035090 | 0.815413 | 9.364990e-52 | -8.615850e-47 |
| Msa0000310 | Msa0039780 | 0.801434 | 9.020881e-49 | -8.615850e-47 |
| Msa0000310 | Msa0046860 | 0.819160 | 1.343407e-52 | -8.615850e-47 |
| Msa0000310 | Msa0049670 | 0.828930 | 6.834388e-55 | -8.615850e-47 |
| Msa0000310 | Msa0054110 | 0.810174 | 1.314316e-50 | -8.615850e-47 |
| Msa0000310 | Msa0057270 | 0.801906 | 7.217120e-49 | -8.615850e-47 |
| Msa0000310 | Msa0087370 | 0.801487 | 8.798531e-49 | -8.615850e-47 |
| Msa0000310 | Msa0090350 | 0.807840 | 4.153354e-50 | -8.615850e-47 |
| Msa0000310 | Msa0099830 | 0.807334 | 5.318957e-50 | -8.615850e-47 |
| Msa0000310 | Msa0130120 | 0.804176 | 2.449550e-49 | -8.615850e-47 |
| Msa0000310 | Msa0138380 | 0.800505 | 1.396741e-48 | -8.615850e-47 |
| Msa0000310 | Msa0184030 | 0.800618 | 1.324530e-48 | -8.615850e-47 |
| Msa0000310 | Msa0187560 | 0.822821 | 1.929133e-53 | -8.615850e-47 |
| Msa0000310 | Msa0198140 | 0.804798 | 1.816820e-49 | -8.615850e-47 |
| Msa0000310 | Msa0198220 | 0.807330 | 5.328776e-50 | -8.615850e-47 |
| Msa0000310 | Msa0221940 | 0.847541 | 1.083608e-59 | -8.615850e-47 |
| Msa0000310 | Msa0226580 | 0.805231 | 1.475024e-49 | -8.615850e-47 |
| Msa0000310 | Msa0228360 | 0.835671 | 1.464956e-56 | -8.615850e-47 |
| Msa0000310 | Msa0240460 | 0.802398 | 5.717185e-49 | -8.615850e-47 |
| Msa0000310 | Msa0249670 | 0.809374 | 1.952681e-50 | -8.615850e-47 |
| Msa0000310 | Msa0263520 | 0.836266 | 1.035198e-56 | -8.615850e-47 |
| Msa0000310 | Msa0270640 | 0.835245 | 1.876912e-56 | -8.615850e-47 |
| Msa0000310 | Msa0278340 | 0.804311 | 2.296118e-49 | -8.615850e-47 |
| Msa0000310 | Msa0290590 | 0.802681 | 4.999068e-49 | -8.615850e-47 |
| Msa0000310 | Msa0292150 | 0.806327 | 8.681159e-50 | -8.615850e-47 |
| Msa0000310 | Msa0301300 | 0.804518 | 2.078347e-49 | -8.615850e-47 |
| Msa0000310 | Msa0311440 | 0.803532 | 3.332989e-49 | -8.615850e-47 |
| Msa0000310 | Msa0338670 | 0.836253 | 1.042857e-56 | -8.615850e-47 |
| Msa0000310 | Msa0343460 | 0.823601 | 1.269024e-53 | -8.615850e-47 |
| Msa0000310 | Msa0367600 | 0.833352 | 5.601520e-56 | -8.615850e-47 |
| Msa0000310 | Msa0375930 | 0.808725 | 2.689439e-50 | -8.615850e-47 |
| Msa0000310 | Msa0385870 | 0.804955 | 1.684480e-49 | -8.615850e-47 |
| Msa0000310 | Msa0415210 | 0.842379 | 2.680723e-58 | -8.615850e-47 |
| Msa0000310 | Msa0418790 | 0.800229 | 1.589291e-48 | -8.615850e-47 |
| Msa0000310 | Msa0424570 | 0.808334 | 3.260099e-50 | -8.615850e-47 |
| Msa0000310 | Msa0425080 | 0.844211 | 8.697415e-59 | -8.615850e-47 |
| Msa0000310 | Msa0426990 | 0.812234 | 4.697764e-51 | -8.615850e-47 |
| Msa0000310 | Msa0429100 | 0.817477 | 3.231431e-52 | -8.615850e-47 |
| Msa0000310 | Msa0481620 | 0.828423 | 9.064811e-55 | -8.615850e-47 |
| Msa0000310 | Msa0483410 | 0.802908 | 4.488290e-49 | -8.615850e-47 |
| Msa0000310 | Msa0486850 | 0.800024 | 1.749682e-48 | -8.615850e-47 |
| Msa0000310 | Msa0516000 | 0.807933 | 3.968282e-50 | -8.615850e-47 |
| Msa0000310 | Msa0516480 | 0.813648 | 2.301058e-51 | -8.615850e-47 |
| Msa0000310 | Msa0523400 | 0.801715 | 7.900648e-49 | -8.615850e-47 |
| Msa0000310 | Msa0540120 | 0.816128 | 6.486746e-52 | -8.615850e-47 |
| Msa0000310 | Msa0558220 | 0.809316 | 2.010016e-50 | -8.615850e-47 |
| Msa0000310 | Msa0558800 | 0.810435 | 1.154389e-50 | -8.615850e-47 |
| Msa0000310 | Msa0564000 | 0.821796 | 3.337327e-53 | -8.615850e-47 |
| Msa0000310 | Msa0569630 | 0.814566 | 1.443280e-51 | -8.615850e-47 |
| Msa0000310 | Msa0570310 | 0.815583 | 8.583522e-52 | -8.615850e-47 |
| Msa0000310 | Msa0576510 | 0.811364 | 7.263668e-51 | -8.615850e-47 |
| Msa0000310 | Msa0577290 | 0.806807 | 6.875482e-50 | -8.615850e-47 |
| Msa0000310 | Msa0577960 | 0.829318 | 5.503629e-55 | -8.615850e-47 |
| Msa0000310 | Msa0587060 | 0.804333 | 2.271465e-49 | -8.615850e-47 |
| Msa0000310 | Msa0587070 | 0.801190 | 1.011903e-48 | -8.615850e-47 |
| Msa0000310 | Msa0619480 | 0.822167 | 2.737348e-53 | -8.615850e-47 |
| Msa0000310 | Msa0622930 | 0.808480 | 3.033599e-50 | -8.615850e-47 |
| Msa0000310 | Msa0623360 | 0.821447 | 4.018220e-53 | -8.615850e-47 |
| Msa0000310 | Msa0625550 | 0.827578 | 1.448145e-54 | -8.615850e-47 |
| Msa0000310 | Msa0628900 | 0.800115 | 1.676449e-48 | -8.615850e-47 |
| Msa0000310 | Msa0635070 | 0.825189 | 5.369106e-54 | -8.615850e-47 |
| Msa0000310 | Msa0636840 | 0.813782 | 2.150471e-51 | -8.615850e-47 |
| Msa0000310 | Msa0639640 | 0.803725 | 3.039514e-49 | -8.615850e-47 |
| Msa0000310 | Msa0640780 | 0.810103 | 1.361577e-50 | -8.615850e-47 |
| Msa0000310 | Msa0656570 | 0.801194 | 1.010281e-48 | -8.615850e-47 |
| Msa0000310 | Msa0657880 | 0.801476 | 8.845717e-49 | -8.615850e-47 |
| Msa0000310 | Msa0659640 | 0.823372 | 1.435087e-53 | -8.615850e-47 |
| Msa0000310 | Msa0665010 | 0.808455 | 3.070571e-50 | -8.615850e-47 |
| Msa0000310 | Msa0687320 | 0.815435 | 9.256867e-52 | -8.615850e-47 |
| Msa0000310 | Msa0695930 | 0.804454 | 2.143436e-49 | -8.615850e-47 |
| Msa0000310 | Msa0697230 | 0.805693 | 1.179901e-49 | -8.615850e-47 |
| Msa0000310 | Msa0700430 | 0.802996 | 4.303463e-49 | -8.615850e-47 |
| Msa0000310 | Msa0700870 | 0.813391 | 2.621525e-51 | -8.615850e-47 |
| Msa0000310 | Msa0700930 | 0.808635 | 2.811582e-50 | -8.615850e-47 |
| Msa0000310 | Msa0701780 | 0.824910 | 6.247033e-54 | -8.615850e-47 |
| Msa0000310 | Msa0707870 | 0.814977 | 1.170118e-51 | -8.615850e-47 |
| Msa0000310 | Msa0729590 | 0.803148 | 4.002632e-49 | -8.615850e-47 |
| Msa0000310 | Msa0747660 | 0.831965 | 1.237714e-55 | -8.615850e-47 |
| Msa0000310 | Msa0755530 | 0.804035 | 2.620757e-49 | -8.615850e-47 |
| Msa0000310 | Msa0778060 | 0.802623 | 5.139166e-49 | -8.615850e-47 |
| Msa0000310 | Msa0785670 | 0.838856 | 2.242334e-57 | -8.615850e-47 |
| Msa0000310 | Msa0797210 | 0.800655 | 1.301617e-48 | -8.615850e-47 |
| Msa0000310 | Msa0821490 | 0.806160 | 9.414233e-50 | -8.615850e-47 |
| Msa0000310 | Msa0822680 | 0.801913 | 7.193073e-49 | -8.615850e-47 |
| Msa0000310 | Msa0835070 | 0.800881 | 1.170280e-48 | -8.615850e-47 |
| Msa0000310 | Msa0872800 | 0.830546 | 2.763450e-55 | -8.615850e-47 |
| Msa0000310 | Msa0880170 | 0.815963 | 7.062417e-52 | -8.615850e-47 |
| Msa0000310 | Msa0899080 | 0.827860 | 1.238608e-54 | -8.615850e-47 |
| Msa0000310 | Msa0906100 | 0.801370 | 9.295967e-49 | -8.615850e-47 |
| Msa0000310 | Msa0906310 | 0.803718 | 3.049048e-49 | -8.615850e-47 |
| Msa0000310 | Msa0927890 | 0.812707 | 3.702923e-51 | -8.615850e-47 |
| Msa0000310 | Msa0967250 | 0.837372 | 5.404732e-57 | -8.615850e-47 |
| Msa0000310 | Msa0967260 | 0.829030 | 6.463634e-55 | -8.615850e-47 |
| Msa0000310 | Msa0967670 | 0.802096 | 6.595830e-49 | -8.615850e-47 |
| Msa0000310 | Msa0968970 | 0.843184 | 1.638056e-58 | -8.615850e-47 |
| Msa0000310 | Msa0998940 | 0.840140 | 1.040191e-57 | -8.615850e-47 |
| Msa0000310 | Msa1029190 | 0.813777 | 2.155877e-51 | -8.615850e-47 |
| Msa0000310 | Msa1033710 | 0.802782 | 4.764011e-49 | -8.615850e-47 |
| Msa0000310 | Msa1049440 | 0.817339 | 3.470660e-52 | -8.615850e-47 |
| Msa0000310 | Msa1071460 | 0.816895 | 4.367775e-52 | -8.615850e-47 |
| Msa0000310 | Msa1072770 | 0.801734 | 7.830435e-49 | -8.615850e-47 |
| Msa0000310 | Msa1083850 | 0.803406 | 3.539026e-49 | -8.615850e-47 |
| Msa0000310 | Msa1090020 | 0.826048 | 3.359452e-54 | -8.615850e-47 |
| Msa0000310 | Msa1098070 | 0.809757 | 1.616262e-50 | -8.615850e-47 |
| Msa0000310 | Msa1129320 | 0.825231 | 5.247430e-54 | -8.615850e-47 |
| Msa0000310 | Msa1144380 | 0.809157 | 2.173786e-50 | -8.615850e-47 |
| Msa0000310 | Msa1147600 | 0.842018 | 3.339901e-58 | -8.615850e-47 |
| Msa0000310 | Msa1147870 | 0.819972 | 8.768892e-53 | -8.615850e-47 |
| Msa0000310 | Msa1154750 | 0.801816 | 7.532894e-49 | -8.615850e-47 |
| Msa0000310 | Msa1160470 | 0.801091 | 1.060141e-48 | -8.615850e-47 |
| Msa0000310 | Msa1161520 | 0.800275 | 1.555992e-48 | -8.615850e-47 |
| Msa0000310 | Msa1186010 | 0.823244 | 1.537442e-53 | -8.615850e-47 |
| Msa0000310 | Msa1203210 | 0.801600 | 8.341121e-49 | -8.615850e-47 |
| Msa0000310 | Msa1203840 | 0.815740 | 7.917570e-52 | -8.615850e-47 |
| Msa0000310 | Msa1204110 | 0.804279 | 2.331233e-49 | -8.615850e-47 |
| Msa0000310 | Msa1204380 | 0.962066 | 1.947106e-120 | -8.615850e-47 |
| Msa0000310 | Msa1204390 | 0.808736 | 2.674477e-50 | -8.615850e-47 |
| Msa0000310 | Msa1218080 | 0.848662 | 5.311966e-60 | -8.615850e-47 |
| Msa0000310 | Msa1245300 | 0.823195 | 1.578578e-53 | -8.615850e-47 |
| Msa0000310 | Msa1252040 | 0.807132 | 5.868912e-50 | -8.615850e-47 |
| Msa0000310 | Msa1262740 | 0.812954 | 3.269033e-51 | -8.615850e-47 |
| Msa0000310 | Msa1263610 | 0.822904 | 1.845255e-53 | -8.615850e-47 |
| Msa0000310 | Msa1264230 | 0.811545 | 6.636331e-51 | -8.615850e-47 |
| Msa0000310 | Msa1272770 | 0.804316 | 2.290756e-49 | -8.615850e-47 |
| Msa0000310 | Msa1296600 | 0.967889 | 6.656172e-128 | -8.615850e-47 |
| Msa0000310 | Msa1302920 | 0.811586 | 6.501102e-51 | -8.615850e-47 |
| Msa0000310 | Msa1310300 | 0.807313 | 5.372257e-50 | -8.615850e-47 |
| Msa0000310 | Msa1329010 | 0.960874 | 4.719514e-119 | -8.615850e-47 |
| Msa0000310 | Msa1329020 | 0.802423 | 5.650984e-49 | -8.615850e-47 |
| Msa0000310 | Msa1329660 | 0.800051 | 1.728058e-48 | -8.615850e-47 |
| Msa0000310 | Msa1336350 | 0.820147 | 7.997596e-53 | -8.615850e-47 |
| Msa0000310 | Msa1343540 | 0.835967 | 1.232860e-56 | -8.615850e-47 |
| Msa0000310 | Msa1346920 | 0.805542 | 1.269273e-49 | -8.615850e-47 |
| Msa0000310 | Msa1351560 | 0.810446 | 1.148152e-50 | -8.615850e-47 |
| Msa0000310 | Msa1374210 | 0.835439 | 1.676673e-56 | -8.615850e-47 |
| Msa0000310 | Msa1381720 | 0.818322 | 2.082314e-52 | -8.615850e-47 |
| Msa0000310 | Msa1385940 | 0.800162 | 1.640263e-48 | -8.615850e-47 |
| Msa0000310 | Msa1389990 | 0.802044 | 6.761795e-49 | -8.615850e-47 |
| Msa0000310 | Msa1393600 | 0.818847 | 1.583034e-52 | -8.615850e-47 |
| Msa0000310 | Msa1405190 | 0.807104 | 5.948994e-50 | -8.615850e-47 |
| Msa0000310 | Msa1418780 | 0.801774 | 7.682701e-49 | -8.615850e-47 |
| Msa0000310 | Msa1433380 | 0.811561 | 6.582082e-51 | -8.615850e-47 |
| Msa0000310 | Msa1446220 | 0.800431 | 1.445614e-48 | -8.615850e-47 |
| Msa0000310 | Msa1450850 | 0.801260 | 9.791269e-49 | -8.615850e-47 |
| Msa0000310 | Msa1454940 | 0.806830 | 6.799125e-50 | -8.615850e-47 |
| Msa0000310 | Msa1458280 | 0.832345 | 9.968576e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000310 | MtrunA17_Chr4g0053421 | 94.363 | 408 | 21 | 1 | 1 | 408 | 1 | 406 | 0.0 | 727 |
| Msa0000310 | MtrunA17_Chr8g0370051 | 97.561 | 82 | 1 | 1 | 295 | 376 | 21 | 101 | 1.08e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000310 | AT5G67290.1 | 71.622 | 370 | 99 | 2 | 38 | 405 | 40 | 405 | 0.0 | 532 |
Find 184 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCAAGGTTTAGAGTTTC+TGG | 0.052251 | 1_1:+1351885 | Msa0000310:CDS |
| CGTAATAGCATTAGCTTCTT+TGG | 0.192294 | 1_1:-1351937 | None:intergenic |
| GGAAATTGTGATTGGGAAAT+TGG | 0.237880 | 1_1:+1351743 | Msa0000310:CDS |
| AATTATTATGAATTCAGTTT+AGG | 0.262062 | 1_1:-1351020 | None:intergenic |
| GGGCCCTTGGTCTAGTAAAT+TGG | 0.278810 | 1_1:+1351854 | Msa0000310:CDS |
| GTACTTCTCGAACTTGTTAC+AGG | 0.302335 | 1_1:-1353459 | None:intergenic |
| TGGGCTCTAAAACAATACTA+TGG | 0.307026 | 1_1:-1351917 | None:intergenic |
| CGTCAGCTACTTTGCCGTCT+TGG | 0.313573 | 1_1:+1351604 | Msa0000310:CDS |
| GTTGCTGAGCTTGTACTTGA+TGG | 0.314697 | 1_1:+1353225 | Msa0000310:CDS |
| ATTATTATGAATTCAGTTTA+GGG | 0.319491 | 1_1:-1351019 | None:intergenic |
| GTAATAGCATTAGCTTCTTT+GGG | 0.322290 | 1_1:-1351936 | None:intergenic |
| TGTAACGGAGGCACCTTTCT+TGG | 0.330519 | 1_1:-1351352 | None:intergenic |
| TTCCGCCAACTAGTATAATA+TGG | 0.334178 | 1_1:-1351109 | None:intergenic |
| GTTTGCGGTGGCGGAGTTAT+CGG | 0.334496 | 1_1:+1351306 | Msa0000310:CDS |
| TAGGAATCCACCAGCTTTAC+CGG | 0.334757 | 1_1:-1351409 | None:intergenic |
| GATGATGGTGTGCCGATTAT+AGG | 0.335684 | 1_1:+1353117 | Msa0000310:CDS |
| ACTTTGCCGTCTTGGATTGA+TGG | 0.340624 | 1_1:+1351612 | Msa0000310:CDS |
| CCGCAAACAACCACTTTCTT+CGG | 0.343837 | 1_1:-1351291 | None:intergenic |
| TTTAGTCCTGCTAGATTTGT+TGG | 0.345510 | 1_1:+1353276 | Msa0000310:CDS |
| TGGATTGATGGGCCGGCCCA+TGG | 0.348270 | 1_1:+1351624 | Msa0000310:CDS |
| GTTTAGAGTTTCTGGGCTTA+AGG | 0.354081 | 1_1:+1351893 | Msa0000310:CDS |
| GTAGGCCGAGGGTACACTTC+TGG | 0.354479 | 1_1:-1352014 | None:intergenic |
| GTGGATTCCTAGCTTTAGAT+TGG | 0.367942 | 1_1:+1351421 | Msa0000310:CDS |
| CCACCATTGTTGATCTTAAA+CGG | 0.372685 | 1_1:+1353253 | Msa0000310:CDS |
| CGCAAACAACCACTTTCTTC+GGG | 0.379429 | 1_1:-1351290 | None:intergenic |
| CTCACACACTAAGTCTGATT+TGG | 0.384313 | 1_1:-1353621 | None:intergenic |
| GTGGAAATGCGTATTCTGTT+TGG | 0.389369 | 1_1:-1351219 | None:intergenic |
| GCTCAAGGTTTAGAGTTTCT+GGG | 0.393881 | 1_1:+1351886 | Msa0000310:CDS |
| ACCATTGCTTGTGCCGCTTC+CGG | 0.396774 | 1_1:+1351390 | Msa0000310:CDS |
| CACTTTCTTCGGGTGATCCA+TGG | 0.400502 | 1_1:-1351280 | None:intergenic |
| TGCATAAAATATGCAAGGTC+CGG | 0.400962 | 1_1:-1353536 | None:intergenic |
| AGTAGAAAATGCTTAACATT+TGG | 0.402992 | 1_1:-1350889 | None:intergenic |
| AAGAGGGGTCCTTCGATTAG+AGG | 0.409881 | 1_1:-1351988 | None:intergenic |
| GCCCATGGGCCTAAAACAAT+TGG | 0.415627 | 1_1:+1351639 | Msa0000310:CDS |
| GCCGTCTTGGATTGATGGGC+CGG | 0.417639 | 1_1:+1351617 | Msa0000310:CDS |
| GGATTGATGGGCCGGCCCAT+GGG | 0.421402 | 1_1:+1351625 | Msa0000310:CDS |
| AAAGTGGTTGTTTGCGGTGG+CGG | 0.424230 | 1_1:+1351297 | Msa0000310:CDS |
| CCGATTATAGGAGAGATTCC+TGG | 0.427774 | 1_1:+1353129 | Msa0000310:CDS |
| TCGTTACCCCGTATCTCCTC+TGG | 0.428366 | 1_1:-1352994 | None:intergenic |
| GGGTGTTGTGGATGCGGATG+CGG | 0.429173 | 1_1:+1351818 | Msa0000310:CDS |
| CAATATCTCCAACGTGGATC+CGG | 0.431526 | 1_1:+1350866 | Msa0000310:five_prime_UTR |
| CCAGGAATCTCTCCTATAAT+CGG | 0.432508 | 1_1:-1353129 | None:intergenic |
| TTTCAAGAGTGGTTTAAAAT+CGG | 0.432897 | 1_1:-1350913 | None:intergenic |
| CTTTGCCGTCTTGGATTGAT+GGG | 0.436410 | 1_1:+1351613 | Msa0000310:CDS |
| ATTCTCAATGGTCCTGCCAC+TGG | 0.441042 | 1_1:+1353195 | Msa0000310:CDS |
| CTGATGATCCAGAGGAGATA+CGG | 0.442639 | 1_1:+1352986 | Msa0000310:CDS |
| TATGATGTATATATAACTGT+TGG | 0.447454 | 1_1:+1353374 | Msa0000310:three_prime_UTR |
| TTAGTCCTGCTAGATTTGTT+GGG | 0.447933 | 1_1:+1353277 | Msa0000310:CDS |
| CGTATCTCCTCTGGATCATC+AGG | 0.456119 | 1_1:-1352985 | None:intergenic |
| GCAACAGCAGCTCCAGTGGC+AGG | 0.457894 | 1_1:-1353207 | None:intergenic |
| GAAGTGTACCCTCGGCCTAC+AGG | 0.459094 | 1_1:+1352017 | Msa0000310:CDS |
| TACGGTGTGGAAATTGTGAT+TGG | 0.463322 | 1_1:+1351735 | Msa0000310:CDS |
| TGGTGGCGGGGTTCGAACCC+CGG | 0.464123 | 1_1:+1353517 | Msa0000310:three_prime_UTR |
| AGACCGTATCAAGCCATCTC+GGG | 0.465287 | 1_1:+1353049 | Msa0000310:CDS |
| GTTGAATCGGTGGTTCTAGA+AGG | 0.466838 | 1_1:+1351792 | Msa0000310:CDS |
| TAGCGACGGGACATAGTTGC+TGG | 0.467406 | 1_1:+1353169 | Msa0000310:CDS |
| CCGAAGAAAGTGGTTGTTTG+CGG | 0.469061 | 1_1:+1351291 | Msa0000310:CDS |
| CTCTTAGTACATGGTGTGGC+AGG | 0.469999 | 1_1:+1353318 | Msa0000310:three_prime_UTR |
| CACGAGCGAGATGTTCCATT+GGG | 0.472582 | 1_1:-1351455 | None:intergenic |
| TCACTGTCTCAAGAGCTTAA+CGG | 0.483959 | 1_1:+1351498 | Msa0000310:CDS |
| TGTGCCGCTTCCGGTAAAGC+TGG | 0.485821 | 1_1:+1351399 | Msa0000310:CDS |
| AATTCAGTTTAGGGAAGCTA+TGG | 0.489428 | 1_1:-1351010 | None:intergenic |
| GCATAAAATATGCAAGGTCC+GGG | 0.491454 | 1_1:-1353535 | None:intergenic |
| AGATTGAACTGAATTGATAG+TGG | 0.491685 | 1_1:-1351238 | None:intergenic |
| GTTGTAATCAGAACACCAAC+TGG | 0.492757 | 1_1:+1350952 | Msa0000310:five_prime_UTR |
| TGAGCTTAGCTCAGTTGGTA+TGG | 0.493252 | 1_1:-1353563 | None:intergenic |
| CCTCGTGAGCTTAGCTCAGT+TGG | 0.495913 | 1_1:-1353568 | None:intergenic |
| GCTTACTTTCTCGCCAAGAA+AGG | 0.496186 | 1_1:+1351339 | Msa0000310:CDS |
| TCCACCAGCTTTACCGGAAG+CGG | 0.498128 | 1_1:-1351403 | None:intergenic |
| TCAAGCCATCTCGGGGAAGA+AGG | 0.503074 | 1_1:+1353057 | Msa0000310:CDS |
| GATTGGGAAATTGGAGAAGT+TGG | 0.503420 | 1_1:+1351752 | Msa0000310:CDS |
| TCACTCCTTCTTCCCCGAGA+TGG | 0.503688 | 1_1:-1353062 | None:intergenic |
| CAGGGGAGGTGTATGTGTGT+GGG | 0.503912 | 1_1:+1352941 | Msa0000310:intron |
| AATTGGAGTTGTTGAGCTCA+AGG | 0.504811 | 1_1:+1351871 | Msa0000310:CDS |
| GCACGAGCGAGATGTTCCAT+TGG | 0.507781 | 1_1:-1351456 | None:intergenic |
| CGATTATAGGAGAGATTCCT+GGG | 0.510562 | 1_1:+1353130 | Msa0000310:CDS |
| GAGAAGTTGGTGGTGGAAGG+AGG | 0.512798 | 1_1:+1351765 | Msa0000310:CDS |
| AATGACCATATTATACTAGT+TGG | 0.513748 | 1_1:+1351104 | Msa0000310:five_prime_UTR |
| TGATGATCCAGAGGAGATAC+GGG | 0.515059 | 1_1:+1352987 | Msa0000310:CDS |
| TTGGAGAAGTTGGTGGTGGA+AGG | 0.521275 | 1_1:+1351762 | Msa0000310:CDS |
| ATTACAACTCAGATGGATAG+AGG | 0.521278 | 1_1:-1350937 | None:intergenic |
| AAGACCGTATCAAGCCATCT+CGG | 0.521544 | 1_1:+1353048 | Msa0000310:CDS |
| CTCAGCAACAGCAGCTCCAG+TGG | 0.525546 | 1_1:-1353211 | None:intergenic |
| TGTTGTGGATGCGGATGCGG+TGG | 0.525919 | 1_1:+1351821 | Msa0000310:CDS |
| TCAGGGGAGGTGTATGTGTG+TGG | 0.526444 | 1_1:+1352940 | Msa0000310:intron |
| GTGTCCGTGTAAACATTTGC+GGG | 0.527352 | 1_1:-1351689 | None:intergenic |
| ACCGGAAGCGGCACAAGCAA+TGG | 0.527375 | 1_1:-1351391 | None:intergenic |
| GAAAATGCTTAACATTTGGC+CGG | 0.528164 | 1_1:-1350885 | None:intergenic |
| GAGAACGCGGTGGAGAAGTA+CGG | 0.529700 | 1_1:+1351717 | Msa0000310:CDS |
| ACTTTCTTCGGGTGATCCAT+GGG | 0.531163 | 1_1:-1351279 | None:intergenic |
| TTCCCCGAGATGGCTTGATA+CGG | 0.532681 | 1_1:-1353052 | None:intergenic |
| ATCGGTGGTTCTAGAAGGTG+GGG | 0.534614 | 1_1:+1351797 | Msa0000310:CDS |
| GGAGAGATTCCTGGGGTGAA+AGG | 0.540724 | 1_1:+1353138 | Msa0000310:CDS |
| AATCGGTGGTTCTAGAAGGT+GGG | 0.541985 | 1_1:+1351796 | Msa0000310:CDS |
| CTAGCTTTAGATTGGTGTGA+CGG | 0.542058 | 1_1:+1351429 | Msa0000310:CDS |
| TGGGAAATTGGAGAAGTTGG+TGG | 0.544163 | 1_1:+1351755 | Msa0000310:CDS |
| TGTTCTGATTACAACTCAGA+TGG | 0.544527 | 1_1:-1350944 | None:intergenic |
| GAAATTGGAGAAGTTGGTGG+TGG | 0.545179 | 1_1:+1351758 | Msa0000310:CDS |
| ATTACCAGCCACAAAATACA+AGG | 0.545802 | 1_1:+1351079 | Msa0000310:five_prime_UTR |
| TACTAAGAGTGACTAAGCCT+TGG | 0.546149 | 1_1:-1353304 | None:intergenic |
| GCCGCTTCCGGTAAAGCTGG+TGG | 0.546489 | 1_1:+1351402 | Msa0000310:CDS |
| GGAAGGAGGAAAAGTTGAAT+CGG | 0.546489 | 1_1:+1351779 | Msa0000310:CDS |
| TGGGATGTCAAAGGAGGAAG+AGG | 0.547600 | 1_1:+1352960 | Msa0000310:CDS |
| TGGATAGAGGATTTCAAGAG+TGG | 0.550064 | 1_1:-1350924 | None:intergenic |
| AAGAAAGTGGTTGTTTGCGG+TGG | 0.550857 | 1_1:+1351294 | Msa0000310:CDS |
| GACCATATTATACTAGTTGG+CGG | 0.551011 | 1_1:+1351107 | Msa0000310:five_prime_UTR |
| CGTCACACCAATCTAAAGCT+AGG | 0.552962 | 1_1:-1351428 | None:intergenic |
| AGTTGCTGGGGTATTCTCAA+TGG | 0.554810 | 1_1:+1353183 | Msa0000310:CDS |
| GATCGATAACCGTATGATTG+TGG | 0.557749 | 1_1:-1351522 | None:intergenic |
| AATCAATTGCGATGCTGAAG+AGG | 0.563061 | 1_1:+1353019 | Msa0000310:CDS |
| AAAGGTTGTTATGTAGCGAC+GGG | 0.565815 | 1_1:+1353156 | Msa0000310:CDS |
| GACAATGCATAAAATATGCA+AGG | 0.573559 | 1_1:-1353541 | None:intergenic |
| GTACGCCCAACAAATCTAGC+AGG | 0.574585 | 1_1:-1353282 | None:intergenic |
| GGGCTCTAAAACAATACTAT+GGG | 0.575399 | 1_1:-1351916 | None:intergenic |
| TAATACAGTTAAAGTCCAGT+TGG | 0.577336 | 1_1:-1350967 | None:intergenic |
| AGTGTCCGTGTAAACATTTG+CGG | 0.578489 | 1_1:-1351690 | None:intergenic |
| TTGGTGTGACGGAGGCCCAA+TGG | 0.578735 | 1_1:+1351440 | Msa0000310:CDS |
| TTGATCCAGAAGTGTACCCT+CGG | 0.583741 | 1_1:+1352009 | Msa0000310:CDS |
| CTATGGTTCTCGATCAAGAA+GGG | 0.586109 | 1_1:-1350993 | None:intergenic |
| CATGGATCACCCGAAGAAAG+TGG | 0.588077 | 1_1:+1351281 | Msa0000310:CDS |
| GAAATGCGTATTCTGTTTGG+AGG | 0.589634 | 1_1:-1351216 | None:intergenic |
| GCTTAGTCACTCTTAGTACA+TGG | 0.592068 | 1_1:+1353309 | Msa0000310:exon |
| ATCAATTGCGATGCTGAAGA+GGG | 0.593161 | 1_1:+1353020 | Msa0000310:CDS |
| GAAAGGTTGTTATGTAGCGA+CGG | 0.593501 | 1_1:+1353155 | Msa0000310:CDS |
| AACACATGAAACGACGGCGC+AGG | 0.595682 | 1_1:+1351662 | Msa0000310:CDS |
| ACAATCATACTTCATGAACT+AGG | 0.597320 | 1_1:+1353591 | Msa0000310:three_prime_UTR |
| AAATTCTCAATCATCGCCCA+TGG | 0.597393 | 1_1:+1351263 | Msa0000310:CDS |
| TAGATTTGTTGGGCGTACCA+AGG | 0.600268 | 1_1:+1353287 | Msa0000310:CDS |
| AGCGACGGGACATAGTTGCT+GGG | 0.602375 | 1_1:+1353170 | Msa0000310:CDS |
| ACGGTGTGGAAATTGTGATT+GGG | 0.603421 | 1_1:+1351736 | Msa0000310:CDS |
| ACATAACAACCTTTCACCCC+AGG | 0.606403 | 1_1:-1353147 | None:intergenic |
| GGGTACACTTCTGGATCAAG+AGG | 0.609222 | 1_1:-1352005 | None:intergenic |
| AGAGGTACCTGATGATCCAG+AGG | 0.611459 | 1_1:+1352978 | Msa0000310:CDS |
| GAATCGGTGGTTCTAGAAGG+TGG | 0.612809 | 1_1:+1351795 | Msa0000310:CDS |
| GGAAGCGGCACAAGCAATGG+TGG | 0.615498 | 1_1:-1351388 | None:intergenic |
| CCAACTGAGCTAAGCTCACG+AGG | 0.617839 | 1_1:+1353568 | Msa0000310:three_prime_UTR |
| AACTCCAATTTACTAGACCA+AGG | 0.620795 | 1_1:-1351858 | None:intergenic |
| GGATTTCTCAATGAGTGTAA+CGG | 0.624743 | 1_1:-1351367 | None:intergenic |
| GGGTCCTTCGATTAGAGGCA+CGG | 0.625148 | 1_1:-1351983 | None:intergenic |
| TTGATTCTTCAGTTACGGTG+AGG | 0.625754 | 1_1:-1351560 | None:intergenic |
| CGGGGAAGAAGGAGTGAAGG+TGG | 0.626528 | 1_1:+1353068 | Msa0000310:CDS |
| TGCACCCGCAAATGTTTACA+CGG | 0.626532 | 1_1:+1351685 | Msa0000310:CDS |
| ACATGCATACCTGTAGGCCG+AGG | 0.628125 | 1_1:-1352026 | None:intergenic |
| GACCGTATCAAGCCATCTCG+GGG | 0.629690 | 1_1:+1353050 | Msa0000310:CDS |
| CTTAACGGTCCACAATCATA+CGG | 0.634820 | 1_1:+1351513 | Msa0000310:CDS |
| GGTACACTTCTGGATCAAGA+GGG | 0.635457 | 1_1:-1352004 | None:intergenic |
| CCGTTTAAGATCAACAATGG+TGG | 0.636811 | 1_1:-1353253 | None:intergenic |
| TAATTGATACATGTATGCGA+AGG | 0.638270 | 1_1:+1351038 | Msa0000310:five_prime_UTR |
| AAACCGTTTAAGATCAACAA+TGG | 0.639170 | 1_1:-1353256 | None:intergenic |
| GCTTTAGATTGGTGTGACGG+AGG | 0.639280 | 1_1:+1351432 | Msa0000310:CDS |
| ACATTTGGCCGGATCCACGT+TGG | 0.639395 | 1_1:-1350874 | None:intergenic |
| GCCGGCCCATCAATCCAAGA+CGG | 0.640743 | 1_1:-1351618 | None:intergenic |
| GCTATGGTTCTCGATCAAGA+AGG | 0.643959 | 1_1:-1350994 | None:intergenic |
| TCTCGGGGAAGAAGGAGTGA+AGG | 0.650707 | 1_1:+1353065 | Msa0000310:CDS |
| TTTCTTGGCGAGAAAGTAAG+CGG | 0.651174 | 1_1:-1351337 | None:intergenic |
| GTATGTGTGTGGGATGTCAA+AGG | 0.654645 | 1_1:+1352951 | Msa0000310:CDS |
| CATAAAATATGCAAGGTCCG+GGG | 0.657923 | 1_1:-1353534 | None:intergenic |
| ACTCCAATTTACTAGACCAA+GGG | 0.659722 | 1_1:-1351857 | None:intergenic |
| CGCGGTGGAGAAGTACGGTG+TGG | 0.659962 | 1_1:+1351722 | Msa0000310:CDS |
| AGGAGGAAAAGTTGAATCGG+TGG | 0.662075 | 1_1:+1351782 | Msa0000310:CDS |
| GCTACCGTGCCTCTAATCGA+AGG | 0.663877 | 1_1:+1351979 | Msa0000310:CDS |
| TAAGCTCTTGAGACAGTGAA+CGG | 0.665750 | 1_1:-1351494 | None:intergenic |
| AATTGGAACACATGAAACGA+CGG | 0.667048 | 1_1:+1351656 | Msa0000310:CDS |
| CATGCATACCTGTAGGCCGA+GGG | 0.669805 | 1_1:-1352025 | None:intergenic |
| GCTAATCTGTATGAATCTAG+CGG | 0.674534 | 1_1:+1351185 | Msa0000310:CDS |
| AGACGGCAAAGTAGCTGACG+AGG | 0.677945 | 1_1:-1351601 | None:intergenic |
| CGGCAAAGTAGCTGACGAGG+AGG | 0.678972 | 1_1:-1351598 | None:intergenic |
| TGTGTGTGGGATGTCAAAGG+AGG | 0.686845 | 1_1:+1352954 | Msa0000310:CDS |
| GCGACGGGACATAGTTGCTG+GGG | 0.688705 | 1_1:+1353171 | Msa0000310:CDS |
| GGCACACCATCATCAGTACA+CGG | 0.689638 | 1_1:-1353108 | None:intergenic |
| GTCACTCTTAGTACATGGTG+TGG | 0.692627 | 1_1:+1353314 | Msa0000310:exon |
| TTACCAGCCACAAAATACAA+GGG | 0.693140 | 1_1:+1351080 | Msa0000310:five_prime_UTR |
| GACACTGATTGAGAACGCGG+TGG | 0.698796 | 1_1:+1351707 | Msa0000310:CDS |
| GCTCTTGAGACAGTGAACGG+TGG | 0.699538 | 1_1:-1351491 | None:intergenic |
| AGTTACGGTGAGGCTGAGAG+CGG | 0.699730 | 1_1:-1351550 | None:intergenic |
| TCGGTGGTTCTAGAAGGTGG+GGG | 0.701122 | 1_1:+1351798 | Msa0000310:CDS |
| TTTCTCAATGAGTGTAACGG+AGG | 0.702173 | 1_1:-1351364 | None:intergenic |
| GTACACTTCTGGATCAAGAG+GGG | 0.705861 | 1_1:-1352003 | None:intergenic |
| ACGGACACTGATTGAGAACG+CGG | 0.711223 | 1_1:+1351704 | Msa0000310:CDS |
| TGACGAGGAGGAAGAAACAG+TGG | 0.711480 | 1_1:-1351586 | None:intergenic |
| ATCAAACAATATCTCCAACG+TGG | 0.727124 | 1_1:+1350860 | None:intergenic |
| AATCTGTATGAATCTAGCGG+CGG | 0.733075 | 1_1:+1351188 | Msa0000310:CDS |
| GATTATAGGAGAGATTCCTG+GGG | 0.781423 | 1_1:+1353131 | Msa0000310:CDS |
| GATGATCCAGAGGAGATACG+GGG | 0.782160 | 1_1:+1352988 | Msa0000310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTTTTTTTTAT+AGG | - | chr1_1:1352530-1352549 | None:intergenic | 0.0% |
| !! | ATAAAAAAAAAAAAAAATTA+AGG | + | chr1_1:1352530-1352549 | Msa0000310:intron | 0.0% |
| !! | TAAAAAAAAAAAAAAATTAA+GGG | + | chr1_1:1352531-1352550 | Msa0000310:intron | 0.0% |
| !! | AATTTAAAAATCAAAGATAT+CGG | - | chr1_1:1352109-1352128 | None:intergenic | 10.0% |
| !!! | TATCTTTGATTTTTAAATTT+AGG | + | chr1_1:1352110-1352129 | Msa0000310:intron | 10.0% |
| !!! | TATTTTATTTTAAACAATGT+TGG | + | chr1_1:1352144-1352163 | Msa0000310:intron | 10.0% |
| !!! | AATTTAGACTTTTTTTTTTA+AGG | + | chr1_1:1352322-1352341 | Msa0000310:intron | 10.0% |
| !! | ATTATTATGAATTCAGTTTA+GGG | - | chr1_1:1351022-1351041 | None:intergenic | 15.0% |
| !! | AATTATTATGAATTCAGTTT+AGG | - | chr1_1:1351023-1351042 | None:intergenic | 15.0% |
| !! | AAAAAAATGAAAAACTAAAG+AGG | + | chr1_1:1351130-1351149 | Msa0000310:five_prime_UTR | 15.0% |
| !!! | TATAATTTACAAACGTATTT+TGG | + | chr1_1:1352372-1352391 | Msa0000310:intron | 15.0% |
| !! | TCACAGAAAACTATTTATTT+AGG | + | chr1_1:1352067-1352086 | Msa0000310:intron | 20.0% |
| !!! | TAGACTTTTTTTTTTAAGGA+AGG | + | chr1_1:1352326-1352345 | Msa0000310:intron | 20.0% |
| !! | GTCTCTTAAATTCATATTAT+GGG | - | chr1_1:1352399-1352418 | None:intergenic | 20.0% |
| !! | AGTCTCTTAAATTCATATTA+TGG | - | chr1_1:1352400-1352419 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAAACACTTAGTT+TGG | - | chr1_1:1352558-1352577 | None:intergenic | 20.0% |
| !! | TTGTTGTATTTATATGCATT+TGG | + | chr1_1:1352646-1352665 | Msa0000310:intron | 20.0% |
| !! | TAAACATCAGTATCTATTAA+TGG | - | chr1_1:1352912-1352931 | None:intergenic | 20.0% |
| !!! | TGATGTTTATTTTCTTATCA+GGG | + | chr1_1:1352923-1352942 | Msa0000310:intron | 20.0% |
| !! | TATGATGTATATATAACTGT+TGG | + | chr1_1:1353374-1353393 | Msa0000310:three_prime_UTR | 20.0% |
| ! | AGTAGAAAATGCTTAACATT+TGG | - | chr1_1:1350892-1350911 | None:intergenic | 25.0% |
| !! | TTTCAAGAGTGGTTTAAAAT+CGG | - | chr1_1:1350916-1350935 | None:intergenic | 25.0% |
| ! | AATGACCATATTATACTAGT+TGG | + | chr1_1:1351104-1351123 | Msa0000310:five_prime_UTR | 25.0% |
| !!! | CAGATTAGCATTTTTAGAAT+TGG | - | chr1_1:1351174-1351193 | None:intergenic | 25.0% |
| ! | AATGTTGGTCACTTAAATTA+TGG | + | chr1_1:1352159-1352178 | Msa0000310:intron | 25.0% |
| ! | CAAATGTTAGTAATTACTTC+TGG | - | chr1_1:1352507-1352526 | None:intergenic | 25.0% |
| !!! | GTGTTTTTAAAGAAGCAAAA+TGG | + | chr1_1:1352564-1352583 | Msa0000310:intron | 25.0% |
| ! | TTTAAAGAAGCAAAATGGAA+AGG | + | chr1_1:1352569-1352588 | Msa0000310:intron | 25.0% |
| !! | CAAGAATTTCTAAGAACATT+TGG | - | chr1_1:1352629-1352648 | None:intergenic | 25.0% |
| ! | ATCCTTATTCATAGATTTCT+TGG | + | chr1_1:1352669-1352688 | Msa0000310:intron | 25.0% |
| ! | AACCAAGAAATCTATGAATA+AGG | - | chr1_1:1352674-1352693 | None:intergenic | 25.0% |
| ! | AAATGGTTTGATCCAATTTA+TGG | - | chr1_1:1352697-1352716 | None:intergenic | 25.0% |
| !! | TTTTCAAATTCGAGAAATGT+TGG | + | chr1_1:1352727-1352746 | Msa0000310:intron | 25.0% |
| !!! | CTGATGTTTATTTTCTTATC+AGG | + | chr1_1:1352922-1352941 | Msa0000310:intron | 25.0% |
| !!! | GATGTTTATTTTCTTATCAG+GGG | + | chr1_1:1352924-1352943 | Msa0000310:intron | 25.0% |
| TAATACAGTTAAAGTCCAGT+TGG | - | chr1_1:1350970-1350989 | None:intergenic | 30.0% | |
| TAATTGATACATGTATGCGA+AGG | + | chr1_1:1351038-1351057 | Msa0000310:five_prime_UTR | 30.0% | |
| AGATTGAACTGAATTGATAG+TGG | - | chr1_1:1351241-1351260 | None:intergenic | 30.0% | |
| !! | GGTTTTTGATTCTTCAGTTA+CGG | - | chr1_1:1351568-1351587 | None:intergenic | 30.0% |
| ! | TCATGTGTTCCAATTGTTTT+AGG | - | chr1_1:1351651-1351670 | None:intergenic | 30.0% |
| ! | GTAATAGCATTAGCTTCTTT+GGG | - | chr1_1:1351939-1351958 | None:intergenic | 30.0% |
| CTGTGACTAAGATATTTGAT+TGG | - | chr1_1:1352053-1352072 | None:intergenic | 30.0% | |
| GTCACTTAAATTATGGACTT+TGG | + | chr1_1:1352166-1352185 | Msa0000310:intron | 30.0% | |
| !!! | ACTTGAGCTTTTTTGTCATT+TGG | + | chr1_1:1352189-1352208 | Msa0000310:intron | 30.0% |
| !!! | CTTGAGCTTTTTTGTCATTT+GGG | + | chr1_1:1352190-1352209 | Msa0000310:intron | 30.0% |
| GAGTTTAAAAGATGATGTCA+TGG | + | chr1_1:1352473-1352492 | Msa0000310:intron | 30.0% | |
| AACACCACTTGAAAATGAAA+TGG | + | chr1_1:1352602-1352621 | Msa0000310:intron | 30.0% | |
| GATTTCTTGGTTCCATAAAT+TGG | + | chr1_1:1352682-1352701 | Msa0000310:intron | 30.0% | |
| ATTGGATCAAACCATTTCTT+TGG | + | chr1_1:1352700-1352719 | Msa0000310:intron | 30.0% | |
| TTGAAAAGAGTCCAAAGAAA+TGG | - | chr1_1:1352714-1352733 | None:intergenic | 30.0% | |
| TTGATTGTGTGCTTACTTAT+AGG | + | chr1_1:1352750-1352769 | Msa0000310:intron | 30.0% | |
| ! | AAACCGTTTAAGATCAACAA+TGG | - | chr1_1:1353259-1353278 | None:intergenic | 30.0% |
| CACAACAAAAACAATGGAAA+AGG | - | chr1_1:1353496-1353515 | None:intergenic | 30.0% | |
| !!! | CTTTTCCATTGTTTTTGTTG+TGG | + | chr1_1:1353494-1353513 | Msa0000310:three_prime_UTR | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr1_1:1353544-1353563 | None:intergenic | 30.0% | |
| ACAATCATACTTCATGAACT+AGG | + | chr1_1:1353591-1353610 | Msa0000310:three_prime_UTR | 30.0% | |
| GAAAATGCTTAACATTTGGC+CGG | - | chr1_1:1350888-1350907 | None:intergenic | 35.0% | |
| ATTACAACTCAGATGGATAG+AGG | - | chr1_1:1350940-1350959 | None:intergenic | 35.0% | |
| TGTTCTGATTACAACTCAGA+TGG | - | chr1_1:1350947-1350966 | None:intergenic | 35.0% | |
| AATTCAGTTTAGGGAAGCTA+TGG | - | chr1_1:1351013-1351032 | None:intergenic | 35.0% | |
| ! | TGTATTTTGTGGCTGGTAAT+TGG | - | chr1_1:1351079-1351098 | None:intergenic | 35.0% |
| ATTACCAGCCACAAAATACA+AGG | + | chr1_1:1351079-1351098 | Msa0000310:five_prime_UTR | 35.0% | |
| TTACCAGCCACAAAATACAA+GGG | + | chr1_1:1351080-1351099 | Msa0000310:five_prime_UTR | 35.0% | |
| ! | GTCATTTCCCTTGTATTTTG+TGG | - | chr1_1:1351090-1351109 | None:intergenic | 35.0% |
| GACCATATTATACTAGTTGG+CGG | + | chr1_1:1351107-1351126 | Msa0000310:five_prime_UTR | 35.0% | |
| TTCCGCCAACTAGTATAATA+TGG | - | chr1_1:1351112-1351131 | None:intergenic | 35.0% | |
| GCTAATCTGTATGAATCTAG+CGG | + | chr1_1:1351185-1351204 | Msa0000310:CDS | 35.0% | |
| GGATTTCTCAATGAGTGTAA+CGG | - | chr1_1:1351370-1351389 | None:intergenic | 35.0% | |
| AATTGGAACACATGAAACGA+CGG | + | chr1_1:1351656-1351675 | Msa0000310:CDS | 35.0% | |
| GGAAATTGTGATTGGGAAAT+TGG | + | chr1_1:1351743-1351762 | Msa0000310:CDS | 35.0% | |
| ACTCCAATTTACTAGACCAA+GGG | - | chr1_1:1351860-1351879 | None:intergenic | 35.0% | |
| AACTCCAATTTACTAGACCA+AGG | - | chr1_1:1351861-1351880 | None:intergenic | 35.0% | |
| !! | GGGCTCTAAAACAATACTAT+GGG | - | chr1_1:1351919-1351938 | None:intergenic | 35.0% |
| !! | TGGGCTCTAAAACAATACTA+TGG | - | chr1_1:1351920-1351939 | None:intergenic | 35.0% |
| ! | CGTAATAGCATTAGCTTCTT+TGG | - | chr1_1:1351940-1351959 | None:intergenic | 35.0% |
| ! | TAGCTAAGAAAAAGAGCATG+TGG | - | chr1_1:1351963-1351982 | None:intergenic | 35.0% |
| !!! | CATAGTGTGTAAGTTTTAGG+TGG | - | chr1_1:1352238-1352257 | None:intergenic | 35.0% |
| CACCTAAAACTTACACACTA+TGG | + | chr1_1:1352236-1352255 | Msa0000310:intron | 35.0% | |
| ! | GACCATAGTGTGTAAGTTTT+AGG | - | chr1_1:1352241-1352260 | None:intergenic | 35.0% |
| TCAACATTGTTAGTTGAGCT+AGG | + | chr1_1:1352282-1352301 | Msa0000310:intron | 35.0% | |
| TACCAATGAAGCTACCTATA+GGG | - | chr1_1:1352435-1352454 | None:intergenic | 35.0% | |
| TTACCAATGAAGCTACCTAT+AGG | - | chr1_1:1352436-1352455 | None:intergenic | 35.0% | |
| !! | TGGACCATTTCATTTTCAAG+TGG | - | chr1_1:1352609-1352628 | None:intergenic | 35.0% |
| ACCTTTGAATTACATGTTCC+AGG | + | chr1_1:1352805-1352824 | Msa0000310:intron | 35.0% | |
| ACCTGGAACATGTAATTCAA+AGG | - | chr1_1:1352809-1352828 | None:intergenic | 35.0% | |
| !! | GATTTCACTTTTGTGCCAAT+GGG | - | chr1_1:1352833-1352852 | None:intergenic | 35.0% |
| !! | AGATTTCACTTTTGTGCCAA+TGG | - | chr1_1:1352834-1352853 | None:intergenic | 35.0% |
| !! | GTTTATTTTCTTATCAGGGG+AGG | + | chr1_1:1352927-1352946 | Msa0000310:intron | 35.0% |
| CCACCATTGTTGATCTTAAA+CGG | + | chr1_1:1353253-1353272 | Msa0000310:CDS | 35.0% | |
| TTTAGTCCTGCTAGATTTGT+TGG | + | chr1_1:1353276-1353295 | Msa0000310:CDS | 35.0% | |
| ! | TTAGTCCTGCTAGATTTGTT+GGG | + | chr1_1:1353277-1353296 | Msa0000310:CDS | 35.0% |
| !!! | TTCCATTGTTTTTGTTGTGG+TGG | + | chr1_1:1353497-1353516 | Msa0000310:three_prime_UTR | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | - | chr1_1:1353539-1353558 | None:intergenic | 35.0% | |
| TGGATAGAGGATTTCAAGAG+TGG | - | chr1_1:1350927-1350946 | None:intergenic | 40.0% | |
| GTTGTAATCAGAACACCAAC+TGG | + | chr1_1:1350952-1350971 | Msa0000310:five_prime_UTR | 40.0% | |
| CTATGGTTCTCGATCAAGAA+GGG | - | chr1_1:1350996-1351015 | None:intergenic | 40.0% | |
| ! | TTTCCCTTGTATTTTGTGGC+TGG | - | chr1_1:1351086-1351105 | None:intergenic | 40.0% |
| AATCTGTATGAATCTAGCGG+CGG | + | chr1_1:1351188-1351207 | Msa0000310:CDS | 40.0% | |
| GAAATGCGTATTCTGTTTGG+AGG | - | chr1_1:1351219-1351238 | None:intergenic | 40.0% | |
| GTGGAAATGCGTATTCTGTT+TGG | - | chr1_1:1351222-1351241 | None:intergenic | 40.0% | |
| AAATTCTCAATCATCGCCCA+TGG | + | chr1_1:1351263-1351282 | Msa0000310:CDS | 40.0% | |
| TTTCTTGGCGAGAAAGTAAG+CGG | - | chr1_1:1351340-1351359 | None:intergenic | 40.0% | |
| TTTCTCAATGAGTGTAACGG+AGG | - | chr1_1:1351367-1351386 | None:intergenic | 40.0% | |
| !! | GTGGATTCCTAGCTTTAGAT+TGG | + | chr1_1:1351421-1351440 | Msa0000310:CDS | 40.0% |
| !! | CTAGCTTTAGATTGGTGTGA+CGG | + | chr1_1:1351429-1351448 | Msa0000310:CDS | 40.0% |
| TAAGCTCTTGAGACAGTGAA+CGG | - | chr1_1:1351497-1351516 | None:intergenic | 40.0% | |
| TCACTGTCTCAAGAGCTTAA+CGG | + | chr1_1:1351498-1351517 | Msa0000310:CDS | 40.0% | |
| CTTAACGGTCCACAATCATA+CGG | + | chr1_1:1351513-1351532 | Msa0000310:CDS | 40.0% | |
| GATCGATAACCGTATGATTG+TGG | - | chr1_1:1351525-1351544 | None:intergenic | 40.0% | |
| TTGATTCTTCAGTTACGGTG+AGG | - | chr1_1:1351563-1351582 | None:intergenic | 40.0% | |
| !!! | TCCAATTGTTTTAGGCCCAT+GGG | - | chr1_1:1351643-1351662 | None:intergenic | 40.0% |
| !!! | TTCCAATTGTTTTAGGCCCA+TGG | - | chr1_1:1351644-1351663 | None:intergenic | 40.0% |
| AGTGTCCGTGTAAACATTTG+CGG | - | chr1_1:1351693-1351712 | None:intergenic | 40.0% | |
| TACGGTGTGGAAATTGTGAT+TGG | + | chr1_1:1351735-1351754 | Msa0000310:CDS | 40.0% | |
| ACGGTGTGGAAATTGTGATT+GGG | + | chr1_1:1351736-1351755 | Msa0000310:CDS | 40.0% | |
| GATTGGGAAATTGGAGAAGT+TGG | + | chr1_1:1351752-1351771 | Msa0000310:CDS | 40.0% | |
| GGAAGGAGGAAAAGTTGAAT+CGG | + | chr1_1:1351779-1351798 | Msa0000310:CDS | 40.0% | |
| AATTGGAGTTGTTGAGCTCA+AGG | + | chr1_1:1351871-1351890 | Msa0000310:CDS | 40.0% | |
| ! | AGCTCAAGGTTTAGAGTTTC+TGG | + | chr1_1:1351885-1351904 | Msa0000310:CDS | 40.0% |
| ! | GCTCAAGGTTTAGAGTTTCT+GGG | + | chr1_1:1351886-1351905 | Msa0000310:CDS | 40.0% |
| ! | GTTTAGAGTTTCTGGGCTTA+AGG | + | chr1_1:1351893-1351912 | Msa0000310:CDS | 40.0% |
| ATTGGTACATGCATACCTGT+AGG | - | chr1_1:1352035-1352054 | None:intergenic | 40.0% | |
| ACCAATGAAGCTACCTATAG+GGG | - | chr1_1:1352434-1352453 | None:intergenic | 40.0% | |
| AATCAATTGCGATGCTGAAG+AGG | + | chr1_1:1353019-1353038 | Msa0000310:CDS | 40.0% | |
| ATCAATTGCGATGCTGAAGA+GGG | + | chr1_1:1353020-1353039 | Msa0000310:CDS | 40.0% | |
| !! | TTTTTGCCGTGTACTGATGA+TGG | + | chr1_1:1353102-1353121 | Msa0000310:CDS | 40.0% |
| CCAGGAATCTCTCCTATAAT+CGG | - | chr1_1:1353132-1353151 | None:intergenic | 40.0% | |
| CGATTATAGGAGAGATTCCT+GGG | + | chr1_1:1353130-1353149 | Msa0000310:CDS | 40.0% | |
| GATTATAGGAGAGATTCCTG+GGG | + | chr1_1:1353131-1353150 | Msa0000310:CDS | 40.0% | |
| GAAAGGTTGTTATGTAGCGA+CGG | + | chr1_1:1353155-1353174 | Msa0000310:CDS | 40.0% | |
| AAAGGTTGTTATGTAGCGAC+GGG | + | chr1_1:1353156-1353175 | Msa0000310:CDS | 40.0% | |
| ! | CCGTTTAAGATCAACAATGG+TGG | - | chr1_1:1353256-1353275 | None:intergenic | 40.0% |
| TACTAAGAGTGACTAAGCCT+TGG | - | chr1_1:1353307-1353326 | None:intergenic | 40.0% | |
| GCTTAGTCACTCTTAGTACA+TGG | + | chr1_1:1353309-1353328 | Msa0000310:exon | 40.0% | |
| !! | GTACTTCTCGAACTTGTTAC+AGG | - | chr1_1:1353462-1353481 | None:intergenic | 40.0% |
| CACCACCACAACAAAAACAA+TGG | - | chr1_1:1353502-1353521 | None:intergenic | 40.0% | |
| !!! | CATTGTTTTTGTTGTGGTGG+TGG | + | chr1_1:1353500-1353519 | Msa0000310:three_prime_UTR | 40.0% |
| CATAAAATATGCAAGGTCCG+GGG | - | chr1_1:1353537-1353556 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr1_1:1353538-1353557 | None:intergenic | 40.0% | |
| CAATATCTCCAACGTGGATC+CGG | + | chr1_1:1350866-1350885 | Msa0000310:five_prime_UTR | 45.0% | |
| GCTATGGTTCTCGATCAAGA+AGG | - | chr1_1:1350997-1351016 | None:intergenic | 45.0% | |
| ACTTTCTTCGGGTGATCCAT+GGG | - | chr1_1:1351282-1351301 | None:intergenic | 45.0% | |
| CGCAAACAACCACTTTCTTC+GGG | - | chr1_1:1351293-1351312 | None:intergenic | 45.0% | |
| CCGCAAACAACCACTTTCTT+CGG | - | chr1_1:1351294-1351313 | None:intergenic | 45.0% | |
| CCGAAGAAAGTGGTTGTTTG+CGG | + | chr1_1:1351291-1351310 | Msa0000310:CDS | 45.0% | |
| AAGAAAGTGGTTGTTTGCGG+TGG | + | chr1_1:1351294-1351313 | Msa0000310:CDS | 45.0% | |
| GCTTACTTTCTCGCCAAGAA+AGG | + | chr1_1:1351339-1351358 | Msa0000310:CDS | 45.0% | |
| TAGGAATCCACCAGCTTTAC+CGG | - | chr1_1:1351412-1351431 | None:intergenic | 45.0% | |
| ! | CGTCACACCAATCTAAAGCT+AGG | - | chr1_1:1351431-1351450 | None:intergenic | 45.0% |
| ACTTTGCCGTCTTGGATTGA+TGG | + | chr1_1:1351612-1351631 | Msa0000310:CDS | 45.0% | |
| CTTTGCCGTCTTGGATTGAT+GGG | + | chr1_1:1351613-1351632 | Msa0000310:CDS | 45.0% | |
| TGCACCCGCAAATGTTTACA+CGG | + | chr1_1:1351685-1351704 | Msa0000310:CDS | 45.0% | |
| GTGTCCGTGTAAACATTTGC+GGG | - | chr1_1:1351692-1351711 | None:intergenic | 45.0% | |
| TGGGAAATTGGAGAAGTTGG+TGG | + | chr1_1:1351755-1351774 | Msa0000310:CDS | 45.0% | |
| !! | GAAATTGGAGAAGTTGGTGG+TGG | + | chr1_1:1351758-1351777 | Msa0000310:CDS | 45.0% |
| AGGAGGAAAAGTTGAATCGG+TGG | + | chr1_1:1351782-1351801 | Msa0000310:CDS | 45.0% | |
| !! | GTTGAATCGGTGGTTCTAGA+AGG | + | chr1_1:1351792-1351811 | Msa0000310:CDS | 45.0% |
| !! | AATCGGTGGTTCTAGAAGGT+GGG | + | chr1_1:1351796-1351815 | Msa0000310:CDS | 45.0% |
| !!! | GATGCGGTGGTTTTAGCATT+GGG | + | chr1_1:1351834-1351853 | Msa0000310:CDS | 45.0% |
| GTACACTTCTGGATCAAGAG+GGG | - | chr1_1:1352006-1352025 | None:intergenic | 45.0% | |
| GGTACACTTCTGGATCAAGA+GGG | - | chr1_1:1352007-1352026 | None:intergenic | 45.0% | |
| ! | TTGATCCAGAAGTGTACCCT+CGG | + | chr1_1:1352009-1352028 | Msa0000310:CDS | 45.0% |
| GGTTATCACCACTTCGTCTA+CGG | - | chr1_1:1352217-1352236 | None:intergenic | 45.0% | |
| CTCAAATGAAACCCCCCTAT+AGG | + | chr1_1:1352418-1352437 | Msa0000310:intron | 45.0% | |
| CAATGAAGCTACCTATAGGG+GGG | - | chr1_1:1352432-1352451 | None:intergenic | 45.0% | |
| CCAATGAAGCTACCTATAGG+GGG | - | chr1_1:1352433-1352452 | None:intergenic | 45.0% | |
| TACATGTTCCAGGTTCCCAT+TGG | + | chr1_1:1352815-1352834 | Msa0000310:intron | 45.0% | |
| GTATGTGTGTGGGATGTCAA+AGG | + | chr1_1:1352951-1352970 | Msa0000310:CDS | 45.0% | |
| CTGATGATCCAGAGGAGATA+CGG | + | chr1_1:1352986-1353005 | Msa0000310:CDS | 45.0% | |
| TGATGATCCAGAGGAGATAC+GGG | + | chr1_1:1352987-1353006 | Msa0000310:CDS | 45.0% | |
| AAGACCGTATCAAGCCATCT+CGG | + | chr1_1:1353048-1353067 | Msa0000310:CDS | 45.0% | |
| !! | GATGATGGTGTGCCGATTAT+AGG | + | chr1_1:1353117-1353136 | Msa0000310:CDS | 45.0% |
| CCGATTATAGGAGAGATTCC+TGG | + | chr1_1:1353129-1353148 | Msa0000310:CDS | 45.0% | |
| ACATAACAACCTTTCACCCC+AGG | - | chr1_1:1353150-1353169 | None:intergenic | 45.0% | |
| ! | AGTTGCTGGGGTATTCTCAA+TGG | + | chr1_1:1353183-1353202 | Msa0000310:CDS | 45.0% |
| GTTGCTGAGCTTGTACTTGA+TGG | + | chr1_1:1353225-1353244 | Msa0000310:CDS | 45.0% | |
| !! | TAGATTTGTTGGGCGTACCA+AGG | + | chr1_1:1353287-1353306 | Msa0000310:CDS | 45.0% |
| GTCACTCTTAGTACATGGTG+TGG | + | chr1_1:1353314-1353333 | Msa0000310:exon | 45.0% | |
| !!! | TGTTTTTGTTGTGGTGGTGG+CGG | + | chr1_1:1353503-1353522 | Msa0000310:three_prime_UTR | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr1_1:1353566-1353585 | None:intergenic | 45.0% |
| !! | TTAAAATAAAATAAAATTGA+AGG | - | chr1_1:1352137-1352156 | None:intergenic | 5.0% |
| !! | TTAAATTATAAAAATATTCT+TGG | - | chr1_1:1353430-1353449 | None:intergenic | 5.0% |
| CACTTTCTTCGGGTGATCCA+TGG | - | chr1_1:1351283-1351302 | None:intergenic | 50.0% | |
| CATGGATCACCCGAAGAAAG+TGG | + | chr1_1:1351281-1351300 | Msa0000310:CDS | 50.0% | |
| AAAGTGGTTGTTTGCGGTGG+CGG | + | chr1_1:1351297-1351316 | Msa0000310:CDS | 50.0% | |
| !! | TGTAACGGAGGCACCTTTCT+TGG | - | chr1_1:1351355-1351374 | None:intergenic | 50.0% |
| ! | GCTTTAGATTGGTGTGACGG+AGG | + | chr1_1:1351432-1351451 | Msa0000310:CDS | 50.0% |
| CACGAGCGAGATGTTCCATT+GGG | - | chr1_1:1351458-1351477 | None:intergenic | 50.0% | |
| TGACGAGGAGGAAGAAACAG+TGG | - | chr1_1:1351589-1351608 | None:intergenic | 50.0% | |
| !!! | ATTGTTTTAGGCCCATGGGC+CGG | - | chr1_1:1351639-1351658 | None:intergenic | 50.0% |
| GCCCATGGGCCTAAAACAAT+TGG | + | chr1_1:1351639-1351658 | Msa0000310:CDS | 50.0% | |
| ! | ACGGACACTGATTGAGAACG+CGG | + | chr1_1:1351704-1351723 | Msa0000310:CDS | 50.0% |
| !! | TTGGAGAAGTTGGTGGTGGA+AGG | + | chr1_1:1351762-1351781 | Msa0000310:CDS | 50.0% |
| !! | GAATCGGTGGTTCTAGAAGG+TGG | + | chr1_1:1351795-1351814 | Msa0000310:CDS | 50.0% |
| !! | ATCGGTGGTTCTAGAAGGTG+GGG | + | chr1_1:1351797-1351816 | Msa0000310:CDS | 50.0% |
| !!! | GGATGCGGTGGTTTTAGCAT+TGG | + | chr1_1:1351833-1351852 | Msa0000310:CDS | 50.0% |
| !!! | TGGTTTTAGCATTGGGCCCT+TGG | + | chr1_1:1351841-1351860 | Msa0000310:CDS | 50.0% |
| GGGCCCTTGGTCTAGTAAAT+TGG | + | chr1_1:1351854-1351873 | Msa0000310:CDS | 50.0% | |
| AAGAGGGGTCCTTCGATTAG+AGG | - | chr1_1:1351991-1352010 | None:intergenic | 50.0% | |
| GGGTACACTTCTGGATCAAG+AGG | - | chr1_1:1352008-1352027 | None:intergenic | 50.0% | |
| ATTTGGGTCCGTAGACGAAG+TGG | + | chr1_1:1352206-1352225 | Msa0000310:intron | 50.0% | |
| CCCCCTATAGGTAGCTTCAT+TGG | + | chr1_1:1352430-1352449 | Msa0000310:intron | 50.0% | |
| ! | CTTTTGTGCCAATGGGAACC+TGG | - | chr1_1:1352826-1352845 | None:intergenic | 50.0% |
| TGTGTGTGGGATGTCAAAGG+AGG | + | chr1_1:1352954-1352973 | Msa0000310:CDS | 50.0% | |
| TGGGATGTCAAAGGAGGAAG+AGG | + | chr1_1:1352960-1352979 | Msa0000310:CDS | 50.0% | |
| !! | AGAGGTACCTGATGATCCAG+AGG | + | chr1_1:1352978-1352997 | Msa0000310:CDS | 50.0% |
| CGTATCTCCTCTGGATCATC+AGG | - | chr1_1:1352988-1353007 | None:intergenic | 50.0% | |
| GATGATCCAGAGGAGATACG+GGG | + | chr1_1:1352988-1353007 | Msa0000310:CDS | 50.0% | |
| AGACCGTATCAAGCCATCTC+GGG | + | chr1_1:1353049-1353068 | Msa0000310:CDS | 50.0% | |
| TTCCCCGAGATGGCTTGATA+CGG | - | chr1_1:1353055-1353074 | None:intergenic | 50.0% | |
| GGCACACCATCATCAGTACA+CGG | - | chr1_1:1353111-1353130 | None:intergenic | 50.0% | |
| ATTCTCAATGGTCCTGCCAC+TGG | + | chr1_1:1353195-1353214 | Msa0000310:CDS | 50.0% | |
| GTACGCCCAACAAATCTAGC+AGG | - | chr1_1:1353285-1353304 | None:intergenic | 50.0% | |
| CTCTTAGTACATGGTGTGGC+AGG | + | chr1_1:1353318-1353337 | Msa0000310:three_prime_UTR | 50.0% | |
| !!! | GTTTTTGTTGTGGTGGTGGC+GGG | + | chr1_1:1353504-1353523 | Msa0000310:three_prime_UTR | 50.0% |
| !!! | TTTTTGTTGTGGTGGTGGCG+GGG | + | chr1_1:1353505-1353524 | Msa0000310:three_prime_UTR | 50.0% |
| ACATTTGGCCGGATCCACGT+TGG | - | chr1_1:1350877-1350896 | None:intergenic | 55.0% | |
| !! | GTTTGCGGTGGCGGAGTTAT+CGG | + | chr1_1:1351306-1351325 | Msa0000310:CDS | 55.0% |
| !! | ACCATTGCTTGTGCCGCTTC+CGG | + | chr1_1:1351390-1351409 | Msa0000310:CDS | 55.0% |
| TCCACCAGCTTTACCGGAAG+CGG | - | chr1_1:1351406-1351425 | None:intergenic | 55.0% | |
| GCACGAGCGAGATGTTCCAT+TGG | - | chr1_1:1351459-1351478 | None:intergenic | 55.0% | |
| GCTCTTGAGACAGTGAACGG+TGG | - | chr1_1:1351494-1351513 | None:intergenic | 55.0% | |
| AGTTACGGTGAGGCTGAGAG+CGG | - | chr1_1:1351553-1351572 | None:intergenic | 55.0% | |
| AGACGGCAAAGTAGCTGACG+AGG | - | chr1_1:1351604-1351623 | None:intergenic | 55.0% | |
| ! | CGTCAGCTACTTTGCCGTCT+TGG | + | chr1_1:1351604-1351623 | Msa0000310:CDS | 55.0% |
| AACACATGAAACGACGGCGC+AGG | + | chr1_1:1351662-1351681 | Msa0000310:CDS | 55.0% | |
| ! | GACACTGATTGAGAACGCGG+TGG | + | chr1_1:1351707-1351726 | Msa0000310:CDS | 55.0% |
| GAGAACGCGGTGGAGAAGTA+CGG | + | chr1_1:1351717-1351736 | Msa0000310:CDS | 55.0% | |
| !! | GAGAAGTTGGTGGTGGAAGG+AGG | + | chr1_1:1351765-1351784 | Msa0000310:CDS | 55.0% |
| !! | TCGGTGGTTCTAGAAGGTGG+GGG | + | chr1_1:1351798-1351817 | Msa0000310:CDS | 55.0% |
| !! | TCTAGAAGGTGGGGGTGTTG+TGG | + | chr1_1:1351806-1351825 | Msa0000310:CDS | 55.0% |
| GCTACCGTGCCTCTAATCGA+AGG | + | chr1_1:1351979-1351998 | Msa0000310:CDS | 55.0% | |
| GGGTCCTTCGATTAGAGGCA+CGG | - | chr1_1:1351986-1352005 | None:intergenic | 55.0% | |
| CATGCATACCTGTAGGCCGA+GGG | - | chr1_1:1352028-1352047 | None:intergenic | 55.0% | |
| ACATGCATACCTGTAGGCCG+AGG | - | chr1_1:1352029-1352048 | None:intergenic | 55.0% | |
| ! | TCAGGGGAGGTGTATGTGTG+TGG | + | chr1_1:1352940-1352959 | Msa0000310:intron | 55.0% |
| ! | CAGGGGAGGTGTATGTGTGT+GGG | + | chr1_1:1352941-1352960 | Msa0000310:intron | 55.0% |
| TCGTTACCCCGTATCTCCTC+TGG | - | chr1_1:1352997-1353016 | None:intergenic | 55.0% | |
| GACCGTATCAAGCCATCTCG+GGG | + | chr1_1:1353050-1353069 | Msa0000310:CDS | 55.0% | |
| TCAAGCCATCTCGGGGAAGA+AGG | + | chr1_1:1353057-1353076 | Msa0000310:CDS | 55.0% | |
| TCACTCCTTCTTCCCCGAGA+TGG | - | chr1_1:1353065-1353084 | None:intergenic | 55.0% | |
| TCTCGGGGAAGAAGGAGTGA+AGG | + | chr1_1:1353065-1353084 | Msa0000310:CDS | 55.0% | |
| GGAGAGATTCCTGGGGTGAA+AGG | + | chr1_1:1353138-1353157 | Msa0000310:CDS | 55.0% | |
| TAGCGACGGGACATAGTTGC+TGG | + | chr1_1:1353169-1353188 | Msa0000310:CDS | 55.0% | |
| AGCGACGGGACATAGTTGCT+GGG | + | chr1_1:1353170-1353189 | Msa0000310:CDS | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr1_1:1353571-1353590 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr1_1:1353568-1353587 | Msa0000310:three_prime_UTR | 55.0% | |
| GGAAGCGGCACAAGCAATGG+TGG | - | chr1_1:1351391-1351410 | None:intergenic | 60.0% | |
| ACCGGAAGCGGCACAAGCAA+TGG | - | chr1_1:1351394-1351413 | None:intergenic | 60.0% | |
| !! | TGTGCCGCTTCCGGTAAAGC+TGG | + | chr1_1:1351399-1351418 | Msa0000310:CDS | 60.0% |
| ! | TTGGTGTGACGGAGGCCCAA+TGG | + | chr1_1:1351440-1351459 | Msa0000310:CDS | 60.0% |
| CGGCAAAGTAGCTGACGAGG+AGG | - | chr1_1:1351601-1351620 | None:intergenic | 60.0% | |
| ! | GCCGTCTTGGATTGATGGGC+CGG | + | chr1_1:1351617-1351636 | Msa0000310:CDS | 60.0% |
| GCCGGCCCATCAATCCAAGA+CGG | - | chr1_1:1351621-1351640 | None:intergenic | 60.0% | |
| !! | AGGTGGGGGTGTTGTGGATG+CGG | + | chr1_1:1351812-1351831 | Msa0000310:CDS | 60.0% |
| ! | GGGTGTTGTGGATGCGGATG+CGG | + | chr1_1:1351818-1351837 | Msa0000310:CDS | 60.0% |
| TGTTGTGGATGCGGATGCGG+TGG | + | chr1_1:1351821-1351840 | Msa0000310:CDS | 60.0% | |
| ! | GTAGGCCGAGGGTACACTTC+TGG | - | chr1_1:1352017-1352036 | None:intergenic | 60.0% |
| GAAGTGTACCCTCGGCCTAC+AGG | + | chr1_1:1352017-1352036 | Msa0000310:CDS | 60.0% | |
| CGGGGAAGAAGGAGTGAAGG+TGG | + | chr1_1:1353068-1353087 | Msa0000310:CDS | 60.0% | |
| GCGACGGGACATAGTTGCTG+GGG | + | chr1_1:1353171-1353190 | Msa0000310:CDS | 60.0% | |
| CTCAGCAACAGCAGCTCCAG+TGG | - | chr1_1:1353214-1353233 | None:intergenic | 60.0% | |
| GCCGCTTCCGGTAAAGCTGG+TGG | + | chr1_1:1351402-1351421 | Msa0000310:CDS | 65.0% | |
| ! | TGGATTGATGGGCCGGCCCA+TGG | + | chr1_1:1351624-1351643 | Msa0000310:CDS | 65.0% |
| ! | GGATTGATGGGCCGGCCCAT+GGG | + | chr1_1:1351625-1351644 | Msa0000310:CDS | 65.0% |
| ! | CGCGGTGGAGAAGTACGGTG+TGG | + | chr1_1:1351722-1351741 | Msa0000310:CDS | 65.0% |
| GCAACAGCAGCTCCAGTGGC+AGG | - | chr1_1:1353210-1353229 | None:intergenic | 65.0% | |
| !! | TGGTGGCGGGGTTCGAACCC+CGG | + | chr1_1:1353517-1353536 | Msa0000310:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 1350863 | 1353629 | 1350863 | ID=Msa0000310;Name=Msa0000310 |
| chr1_1 | mRNA | 1350863 | 1353629 | 1350863 | ID=Msa0000310-mRNA-1;Parent=Msa0000310;Name=Msa0000310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=320|1|1|1|1|1|2|315|408 |
| chr1_1 | exon | 1350863 | 1352038 | 1350863 | ID=Msa0000310-mRNA-1:exon:137;Parent=Msa0000310-mRNA-1 |
| chr1_1 | exon | 1352944 | 1353629 | 1352944 | ID=Msa0000310-mRNA-1:exon:138;Parent=Msa0000310-mRNA-1 |
| chr1_1 | five_prime_UTR | 1350863 | 1351182 | 1350863 | ID=Msa0000310-mRNA-1:five_prime_utr;Parent=Msa0000310-mRNA-1 |
| chr1_1 | CDS | 1351183 | 1352038 | 1351183 | ID=Msa0000310-mRNA-1:cds;Parent=Msa0000310-mRNA-1 |
| chr1_1 | CDS | 1352944 | 1353314 | 1352944 | ID=Msa0000310-mRNA-1:cds;Parent=Msa0000310-mRNA-1 |
| chr1_1 | three_prime_UTR | 1353315 | 1353629 | 1353315 | ID=Msa0000310-mRNA-1:three_prime_utr;Parent=Msa0000310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
