Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819440 | XP_003616828.1 | 97.778 | 360 | 5 | 1 | 1 | 360 | 1 | 357 | 0.0 | 727 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819440 | sp|Q8L633|RNZ2_ARATH | 68.451 | 355 | 104 | 3 | 13 | 360 | 1 | 354 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819440 | G7K7F6 | 97.778 | 360 | 5 | 1 | 1 | 360 | 1 | 357 | 0.0 | 727 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008250 | Msa0819440 | 0.805303 | 1.424687e-49 | -8.615850e-47 |
| Msa0045660 | Msa0819440 | 0.800345 | 1.505742e-48 | -8.615850e-47 |
| Msa0105600 | Msa0819440 | 0.802450 | 5.577182e-49 | -8.615850e-47 |
| Msa0605250 | Msa0819440 | 0.803793 | 2.942071e-49 | -8.615850e-47 |
| Msa0622690 | Msa0819440 | 0.816558 | 5.199338e-52 | -8.615850e-47 |
| Msa0645820 | Msa0819440 | 0.802668 | 5.029971e-49 | -8.615850e-47 |
| Msa0646340 | Msa0819440 | 0.837353 | 5.464732e-57 | -8.615850e-47 |
| Msa0650360 | Msa0819440 | 0.812769 | 3.588350e-51 | -8.615850e-47 |
| Msa0668160 | Msa0819440 | 0.803508 | 3.370886e-49 | -8.615850e-47 |
| Msa0685890 | Msa0819440 | 0.814537 | 1.464590e-51 | -8.615850e-47 |
| Msa0714030 | Msa0819440 | 0.800659 | 1.298929e-48 | -8.615850e-47 |
| Msa0714170 | Msa0819440 | 0.803035 | 4.224640e-49 | -8.615850e-47 |
| Msa0727300 | Msa0819440 | 0.816718 | 4.787409e-52 | -8.615850e-47 |
| Msa0738950 | Msa0819440 | 0.800818 | 1.205456e-48 | -8.615850e-47 |
| Msa0756470 | Msa0819440 | 0.807226 | 5.604950e-50 | -8.615850e-47 |
| Msa0775580 | Msa0819440 | 0.803935 | 2.749037e-49 | -8.615850e-47 |
| Msa0783340 | Msa0819440 | 0.834260 | 3.321204e-56 | -8.615850e-47 |
| Msa0819440 | Msa0824140 | 0.810847 | 9.403646e-51 | -8.615850e-47 |
| Msa0819440 | Msa0835520 | 0.806437 | 8.231501e-50 | -8.615850e-47 |
| Msa0819440 | Msa0863250 | 0.815825 | 7.580910e-52 | -8.615850e-47 |
| Msa0819440 | Msa0967700 | 0.802001 | 6.902395e-49 | -8.615850e-47 |
| Msa0819440 | Msa0968780 | 0.806250 | 9.010823e-50 | -8.615850e-47 |
| Msa0819440 | Msa0970050 | 0.812787 | 3.556595e-51 | -8.615850e-47 |
| Msa0819440 | Msa1004260 | 0.818056 | 2.391516e-52 | -8.615850e-47 |
| Msa0819440 | Msa1035510 | 0.854166 | 1.474965e-61 | -8.615850e-47 |
| Msa0819440 | Msa1075420 | 0.876346 | 1.501798e-68 | -8.615850e-47 |
| Msa0819440 | Msa1116550 | 0.864107 | 1.541834e-64 | -8.615850e-47 |
| Msa0819440 | Msa1126170 | 0.828544 | 8.477378e-55 | -8.615850e-47 |
| Msa0819440 | Msa1130650 | 0.830337 | 3.107993e-55 | -8.615850e-47 |
| Msa0819440 | Msa1161760 | 0.800210 | 1.603903e-48 | -8.615850e-47 |
| Msa0819440 | Msa1163050 | 0.876560 | 1.266961e-68 | -8.615850e-47 |
| Msa0819440 | Msa1260760 | 0.803201 | 3.903929e-49 | -8.615850e-47 |
| Msa0819440 | Msa1287090 | -0.834364 | 3.128602e-56 | -8.615850e-47 |
| Msa0819440 | Msa1371840 | 0.808206 | 3.470501e-50 | -8.615850e-47 |
| Msa0819440 | Msa1388240 | 0.808429 | 3.110731e-50 | -8.615850e-47 |
| Msa0819440 | Msa1394900 | 0.801699 | 7.962003e-49 | -8.615850e-47 |
| Msa0147990 | Msa0819440 | 0.818867 | 1.566205e-52 | -8.615850e-47 |
| Msa0171920 | Msa0819440 | 0.812415 | 4.288879e-51 | -8.615850e-47 |
| Msa0190840 | Msa0819440 | 0.815115 | 1.090352e-51 | -8.615850e-47 |
| Msa0224370 | Msa0819440 | 0.817914 | 2.575335e-52 | -8.615850e-47 |
| Msa0224400 | Msa0819440 | 0.818258 | 2.153219e-52 | -8.615850e-47 |
| Msa0258380 | Msa0819440 | 0.815714 | 8.025768e-52 | -8.615850e-47 |
| Msa0267340 | Msa0819440 | 0.876866 | 9.927722e-69 | -8.615850e-47 |
| Msa0335890 | Msa0819440 | -0.801041 | 1.085583e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819440 | MtrunA17_Chr5g0438591 | 97.778 | 360 | 5 | 1 | 1 | 360 | 1 | 357 | 0.0 | 727 |
| Msa0819440 | MtrunA17_Chr5g0444931 | 55.556 | 288 | 128 | 0 | 68 | 355 | 36 | 323 | 2.44e-124 | 360 |
| Msa0819440 | MtrunA17_Chr1g0162061 | 55.208 | 288 | 129 | 0 | 68 | 355 | 48 | 335 | 1.78e-122 | 356 |
| Msa0819440 | MtrunA17_Chr5g0444941 | 53.226 | 62 | 29 | 0 | 74 | 135 | 17 | 78 | 3.03e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819440 | AT2G04530.1 | 68.451 | 355 | 104 | 3 | 13 | 360 | 1 | 354 | 0.0 | 523 |
| Msa0819440 | AT1G74700.1 | 58.633 | 278 | 115 | 0 | 78 | 355 | 3 | 280 | 1.70e-124 | 359 |
Find 97 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGATTTAGACCTAAAT+AGG | 0.216099 | 5_3:+55911196 | Msa0819440:three_prime_UTR |
| GTCATGTTACCTCAGATATA+TGG | 0.222694 | 5_3:-55910104 | None:intergenic |
| CACATCACCAATTCCATTAA+AGG | 0.243501 | 5_3:+55906472 | Msa0819440:CDS |
| TATCTAAATTTAGATGAATT+TGG | 0.257410 | 5_3:+55911167 | Msa0819440:three_prime_UTR |
| ATCGATTGCTTTGCTTATTT+CGG | 0.257437 | 5_3:-55906509 | None:intergenic |
| ACCTGATCCTTTAATGGAAT+TGG | 0.272743 | 5_3:-55906479 | None:intergenic |
| TAAATAACCTGATCCTTTAA+TGG | 0.283171 | 5_3:-55906485 | None:intergenic |
| TTAGGTCTAAATCATTGTTT+TGG | 0.287050 | 5_3:-55911191 | None:intergenic |
| TCTCAATTTGTTTCCCGTTC+AGG | 0.297798 | 5_3:-55909435 | None:intergenic |
| TGGAATTGGTGATGTGGGTT+GGG | 0.359871 | 5_3:-55906465 | None:intergenic |
| GAGGGAATTGTGTGGTGAAA+TGG | 0.360190 | 5_3:-55906421 | None:intergenic |
| TTGAAGGTGGGGTTTGTGAG+AGG | 0.361663 | 5_3:-55906382 | None:intergenic |
| TCTCCTGAGGTAGCCTTCAC+TGG | 0.374275 | 5_3:+55909570 | Msa0819440:CDS |
| GCTCATTGATACACGGATAA+TGG | 0.383000 | 5_3:-55911027 | None:intergenic |
| CGATGGTTGTGTTGTGTTGT+GGG | 0.383436 | 5_3:-55906245 | None:intergenic |
| AAATTGTGAATTGGTTGCTT+TGG | 0.386759 | 5_3:+55908577 | Msa0819440:CDS |
| CTCAATGCATCGGCATTAAG+TGG | 0.394913 | 5_3:-55909621 | None:intergenic |
| TGAAGGTGGGGTTTGTGAGA+GGG | 0.404642 | 5_3:-55906381 | None:intergenic |
| AGGGAATTGTGTGGTGAAAT+GGG | 0.407490 | 5_3:-55906420 | None:intergenic |
| AACAATACAGTCACCTGAAC+GGG | 0.409727 | 5_3:+55909422 | Msa0819440:CDS |
| AGTTGAACTAAATTGTGAAT+TGG | 0.422079 | 5_3:+55908568 | Msa0819440:CDS |
| ACCAATTCCATTAAAGGATC+AGG | 0.424644 | 5_3:+55906478 | Msa0819440:CDS |
| TCAATTGAAGGAGTTTCAAT+TGG | 0.426010 | 5_3:+55906598 | Msa0819440:CDS |
| GTTATATAGTCTACTCAATC+AGG | 0.431968 | 5_3:+55909386 | Msa0819440:CDS |
| GGGATGGAAAGTTGTTGTTT+TGG | 0.433013 | 5_3:-55906445 | None:intergenic |
| ACAGGTTCAACGTAAAGGTT+TGG | 0.435983 | 5_3:+55906561 | Msa0819440:CDS |
| ATTGGTGATGTGGGTTGGGA+TGG | 0.449186 | 5_3:-55906461 | None:intergenic |
| GGAGGGCTGCCAATGTATAT+AGG | 0.451399 | 5_3:+55908443 | Msa0819440:CDS |
| CTCCTGAGGTAGCCTTCACT+GGG | 0.453856 | 5_3:+55909571 | Msa0819440:CDS |
| TTGGAAGGATATTCAATTGA+AGG | 0.462678 | 5_3:+55906586 | Msa0819440:CDS |
| ATGGAATTGGTGATGTGGGT+TGG | 0.462824 | 5_3:-55906466 | None:intergenic |
| ATTGAAGGAGTTTCAATTGG+TGG | 0.465522 | 5_3:+55906601 | Msa0819440:CDS |
| TTCATCAAGATACAATATAG+AGG | 0.465852 | 5_3:+55910508 | Msa0819440:CDS |
| TTTGCATTTGTGTAGTGAAA+TGG | 0.471778 | 5_3:-55906357 | None:intergenic |
| ATGAAGGAAAGGGTTTAGAG+TGG | 0.475692 | 5_3:-55906302 | None:intergenic |
| TGGTGAAATGGGAAAATTTG+TGG | 0.481992 | 5_3:-55906409 | None:intergenic |
| GTCCAAGACTTCAGCAAAAG+TGG | 0.482390 | 5_3:+55910941 | Msa0819440:CDS |
| CTTGACGTTCACAAGACATT+GGG | 0.483347 | 5_3:+55908542 | Msa0819440:CDS |
| TCATGTTACCTCAGATATAT+GGG | 0.483425 | 5_3:-55910103 | None:intergenic |
| ACTGGTTACATTCTTTCTCT+AGG | 0.487663 | 5_3:-55911051 | None:intergenic |
| TCAAATATTGATACCTGGCT+TGG | 0.488765 | 5_3:-55908741 | None:intergenic |
| ACGATGGTTGTGTTGTGTTG+TGG | 0.490354 | 5_3:-55906246 | None:intergenic |
| AAATCACAGGTTCAACGTAA+AGG | 0.491384 | 5_3:+55906556 | Msa0819440:CDS |
| TGAAGGAAAGGGTTTAGAGT+GGG | 0.495530 | 5_3:-55906301 | None:intergenic |
| GATTTGAAGCCTTCTGTAAG+TGG | 0.496785 | 5_3:-55910966 | None:intergenic |
| ATTTGAGAGGATGAAGGAAA+GGG | 0.498326 | 5_3:-55906312 | None:intergenic |
| TCAACATCGTCTTTGATGCA+TGG | 0.500196 | 5_3:-55908512 | None:intergenic |
| CAGGGGAGACATATGAAATA+CGG | 0.510868 | 5_3:+55908676 | Msa0819440:intron |
| CCATGGATTTGAGAGGATGA+AGG | 0.512941 | 5_3:-55906318 | None:intergenic |
| TCAACGTAAAGGTTTGGACT+TGG | 0.516194 | 5_3:+55906567 | Msa0819440:CDS |
| CTACTGTGGTTGAATCATCT+AGG | 0.522327 | 5_3:-55910056 | None:intergenic |
| CCTTCATCCTCTCAAATCCA+TGG | 0.528672 | 5_3:+55906318 | Msa0819440:exon |
| GCTTGACGTTCACAAGACAT+TGG | 0.542921 | 5_3:+55908541 | Msa0819440:CDS |
| TCCCCAGTGAAGGCTACCTC+AGG | 0.543025 | 5_3:-55909573 | None:intergenic |
| GAATTGGTTGCTTTGGATGT+CGG | 0.545527 | 5_3:+55908584 | Msa0819440:CDS |
| CGTAAAGGTTTGGACTTGGA+AGG | 0.546281 | 5_3:+55906571 | Msa0819440:CDS |
| GATTTGAGAGGATGAAGGAA+AGG | 0.550538 | 5_3:-55906313 | None:intergenic |
| CTTTAATGGAATTGGTGATG+TGG | 0.557347 | 5_3:-55906471 | None:intergenic |
| ATTCTGATGAATAGCTCTAG+TGG | 0.559629 | 5_3:-55906683 | None:intergenic |
| GGTGAAATGGGAAAATTTGT+GGG | 0.563235 | 5_3:-55906408 | None:intergenic |
| TTTAATGGAATTGGTGATGT+GGG | 0.564235 | 5_3:-55906470 | None:intergenic |
| ACAACATGTTATACCAAGCC+AGG | 0.564907 | 5_3:+55908728 | Msa0819440:CDS |
| ATTCACAATTTAGTTCAACT+TGG | 0.565102 | 5_3:-55908565 | None:intergenic |
| CTTCAAATCACAATACACAT+AGG | 0.566684 | 5_3:+55910980 | Msa0819440:CDS |
| GATGGTTGTGTTGTGTTGTG+GGG | 0.567860 | 5_3:-55906244 | None:intergenic |
| TTCTGATGAATAGCTCTAGT+GGG | 0.572017 | 5_3:-55906682 | None:intergenic |
| TCAAAAGCACATTTAAACTC+AGG | 0.587683 | 5_3:-55906646 | None:intergenic |
| GATGCATGGAGGTACAAATA+CGG | 0.589618 | 5_3:-55908498 | None:intergenic |
| ATAACATGTTGTGTTCTGAA+TGG | 0.593217 | 5_3:-55908717 | None:intergenic |
| GCGAAGTGGAAGAGTTGCCA+TGG | 0.593878 | 5_3:-55906335 | None:intergenic |
| CCACGACTTCCTATATACAT+TGG | 0.595400 | 5_3:-55908452 | None:intergenic |
| ATGGTTGTGTTGTGTTGTGG+GGG | 0.603755 | 5_3:-55906243 | None:intergenic |
| AAAGTGGTTCCACTTACAGA+AGG | 0.615621 | 5_3:+55910957 | Msa0819440:CDS |
| AAACAATACAGTCACCTGAA+CGG | 0.618544 | 5_3:+55909421 | Msa0819440:CDS |
| TGATGTTGTATCCCCAGTGA+AGG | 0.625436 | 5_3:-55909583 | None:intergenic |
| GTACCGTGTTGCAAAATCAC+AGG | 0.625905 | 5_3:+55906543 | Msa0819440:CDS |
| CATGGAGGTACAAATACGGT+GGG | 0.631343 | 5_3:-55908494 | None:intergenic |
| TTCTGAATGGTCGAACAACA+AGG | 0.634897 | 5_3:-55908704 | None:intergenic |
| TCAATGCATCGGCATTAAGT+GGG | 0.635067 | 5_3:-55909620 | None:intergenic |
| TCTAGGTGCTCATTGATACA+CGG | 0.643560 | 5_3:-55911034 | None:intergenic |
| GGAGGTACAAATACGGTGGG+AGG | 0.644079 | 5_3:-55908491 | None:intergenic |
| CCAATGTATATAGGAAGTCG+TGG | 0.651899 | 5_3:+55908452 | Msa0819440:CDS |
| GTGAAATGGGAAAATTTGTG+GGG | 0.659190 | 5_3:-55906407 | None:intergenic |
| GCATGGAGGTACAAATACGG+TGG | 0.660563 | 5_3:-55908495 | None:intergenic |
| TGGTCATACCCATATATCTG+AGG | 0.662316 | 5_3:+55910095 | Msa0819440:CDS |
| ATATATGGGTATGACCATGT+TGG | 0.662736 | 5_3:-55910089 | None:intergenic |
| AGCAAAAGTTCTTATAACCG+AGG | 0.665868 | 5_3:+55909644 | Msa0819440:CDS |
| GTAGAGCATGCACGCCAACA+TGG | 0.668020 | 5_3:+55910075 | Msa0819440:CDS |
| AGAGTTGCCATGGATTTGAG+AGG | 0.670139 | 5_3:-55906325 | None:intergenic |
| TGAAATGGGAAAATTTGTGG+GGG | 0.677462 | 5_3:-55906406 | None:intergenic |
| TTGGCGTGCATGCTCTACTG+TGG | 0.686614 | 5_3:-55910070 | None:intergenic |
| AGCTCATTGAAAATGCTCAG+TGG | 0.703675 | 5_3:+55910453 | Msa0819440:intron |
| AGACACTATATTATCTCCTG+AGG | 0.717343 | 5_3:+55909557 | Msa0819440:CDS |
| TGTGTAGTGAAATGGCGAAG+TGG | 0.723567 | 5_3:-55906349 | None:intergenic |
| ACATCGTCTTTGATGCATGG+AGG | 0.734178 | 5_3:-55908509 | None:intergenic |
| GAGACAGTGATGAATGACGA+TGG | 0.772482 | 5_3:-55906262 | None:intergenic |
| TCCTGAGGTAGCCTTCACTG+GGG | 0.776935 | 5_3:+55909572 | Msa0819440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAACTTTATTATAATT+GGG | + | chr5_3:55907616-55907635 | Msa0819440:intron | 10.0% |
| !!! | AAAAACTATTTTTTTCTTTC+TGG | + | chr5_3:55907134-55907153 | Msa0819440:intron | 15.0% |
| !!! | AAAACTATTTTTTTCTTTCT+GGG | + | chr5_3:55907135-55907154 | Msa0819440:intron | 15.0% |
| !! | GAAGTTAACTTTATTATAAT+TGG | + | chr5_3:55907615-55907634 | Msa0819440:intron | 15.0% |
| !! | TAGAGAAAAATATCATTTAT+TGG | + | chr5_3:55907913-55907932 | Msa0819440:intron | 15.0% |
| !! | AAAAAAGATTTAACATTGAT+AGG | + | chr5_3:55908178-55908197 | Msa0819440:intron | 15.0% |
| !!! | TTAAATTTAAGTTGTGTATT+TGG | + | chr5_3:55908952-55908971 | Msa0819440:intron | 15.0% |
| !! | TATCTAAATTTAGATGAATT+TGG | + | chr5_3:55911167-55911186 | Msa0819440:three_prime_UTR | 15.0% |
| !!! | TTTAAATGTGCTTTTGATAT+TGG | + | chr5_3:55906652-55906671 | Msa0819440:CDS | 20.0% |
| !! | ATCACAAATGAAAACATTAT+TGG | - | chr5_3:55906776-55906795 | None:intergenic | 20.0% |
| !!! | CCAAAAAAAGATTACAATTT+TGG | - | chr5_3:55907236-55907255 | None:intergenic | 20.0% |
| !!! | CCAAAATTGTAATCTTTTTT+TGG | + | chr5_3:55907233-55907252 | Msa0819440:intron | 20.0% |
| !! | CAACAACATAAAAAATTGTT+CGG | - | chr5_3:55907478-55907497 | None:intergenic | 20.0% |
| !!! | ATTATAATTGGGTTAGTATT+AGG | + | chr5_3:55907627-55907646 | Msa0819440:intron | 20.0% |
| !!! | TTATAATTGGGTTAGTATTA+GGG | + | chr5_3:55907628-55907647 | Msa0819440:intron | 20.0% |
| !!! | AATATGTTTTTGATAAAGCA+GGG | - | chr5_3:55907674-55907693 | None:intergenic | 20.0% |
| !!! | AAATATGTTTTTGATAAAGC+AGG | - | chr5_3:55907675-55907694 | None:intergenic | 20.0% |
| !!! | ATTTTGACTTAGATGAATAA+AGG | + | chr5_3:55907780-55907799 | Msa0819440:intron | 20.0% |
| !! | TAATACATTATTATAGAGCT+TGG | + | chr5_3:55908110-55908129 | Msa0819440:intron | 20.0% |
| !!! | ATCTTTTTTCAACTATAAAC+AGG | - | chr5_3:55908167-55908186 | None:intergenic | 20.0% |
| !! | AATTTGAAAACTGAAAAGAA+AGG | - | chr5_3:55908242-55908261 | None:intergenic | 20.0% |
| !!! | ATGATGATTTTGAATGATTT+AGG | + | chr5_3:55908421-55908440 | Msa0819440:intron | 20.0% |
| !!! | TGATGATTTTGAATGATTTA+GGG | + | chr5_3:55908422-55908441 | Msa0819440:intron | 20.0% |
| !!! | ATTTGTCAATTTTCATTTCA+GGG | + | chr5_3:55908658-55908677 | Msa0819440:intron | 20.0% |
| !!! | AACACAATCTTTTAATAGAA+TGG | + | chr5_3:55909670-55909689 | Msa0819440:intron | 20.0% |
| !!! | TTTCTTAACATCTATTTCTA+TGG | - | chr5_3:55909753-55909772 | None:intergenic | 20.0% |
| !!! | ATAATTTAACATTTTCTCTC+TGG | + | chr5_3:55909868-55909887 | Msa0819440:intron | 20.0% |
| !! | ATTGTTGAAACTATTATAAC+AGG | + | chr5_3:55910026-55910045 | Msa0819440:intron | 20.0% |
| !!! | TGACGTTTTTCATTATTTTA+TGG | + | chr5_3:55910123-55910142 | Msa0819440:intron | 20.0% |
| !! | AACTATAATGTAAAGACTTT+AGG | - | chr5_3:55910281-55910300 | None:intergenic | 20.0% |
| !! | AGTATGTCATAATCATAATA+TGG | - | chr5_3:55910327-55910346 | None:intergenic | 20.0% |
| !!! | AGGTTTTTTTTATCTTGAAA+TGG | - | chr5_3:55910370-55910389 | None:intergenic | 20.0% |
| !! | TTAAATATGTTTACAACATC+AGG | - | chr5_3:55910427-55910446 | None:intergenic | 20.0% |
| !!! | TAACATTCTTTTTCATAAAC+TGG | - | chr5_3:55911072-55911091 | None:intergenic | 20.0% |
| ! | TAAATAACCTGATCCTTTAA+TGG | - | chr5_3:55906488-55906507 | None:intergenic | 25.0% |
| !!! | AAGTTTAATTTCCCAACTTT+TGG | + | chr5_3:55906744-55906763 | Msa0819440:intron | 25.0% |
| ! | ACAAATGAAAACATTATTGG+CGG | - | chr5_3:55906773-55906792 | None:intergenic | 25.0% |
| ! | TATTGAATAACTGTTGTATC+TGG | + | chr5_3:55906902-55906921 | Msa0819440:intron | 25.0% |
| ! | TTGTACTAATTCACATATCA+AGG | - | chr5_3:55907055-55907074 | None:intergenic | 25.0% |
| ! | TACATATAACATGTACTAGT+AGG | + | chr5_3:55907431-55907450 | Msa0819440:intron | 25.0% |
| ! | ACATATAACATGTACTAGTA+GGG | + | chr5_3:55907432-55907451 | Msa0819440:intron | 25.0% |
| !!! | TATAATTGGGTTAGTATTAG+GGG | + | chr5_3:55907629-55907648 | Msa0819440:intron | 25.0% |
| ! | AGAGTGAAAAAATTAAGTCT+TGG | + | chr5_3:55907700-55907719 | Msa0819440:intron | 25.0% |
| ! | TAATCAACATAGAGATAGTT+TGG | - | chr5_3:55907973-55907992 | None:intergenic | 25.0% |
| !! | ATTCACAATTTAGTTCAACT+TGG | - | chr5_3:55908568-55908587 | None:intergenic | 25.0% |
| ! | AGTTGAACTAAATTGTGAAT+TGG | + | chr5_3:55908568-55908587 | Msa0819440:CDS | 25.0% |
| !! | GATTTGTCAATTTTCATTTC+AGG | + | chr5_3:55908657-55908676 | Msa0819440:intron | 25.0% |
| !! | TTTGTCAATTTTCATTTCAG+GGG | + | chr5_3:55908659-55908678 | Msa0819440:intron | 25.0% |
| ! | TATGTTCAAATATTGATACC+TGG | - | chr5_3:55908749-55908768 | None:intergenic | 25.0% |
| ! | AAAAACAAGCATATGTTTCA+TGG | - | chr5_3:55908922-55908941 | None:intergenic | 25.0% |
| ! | TTCTAATTTATAACCACCAT+AGG | + | chr5_3:55909212-55909231 | Msa0819440:intron | 25.0% |
| ! | ATTGAGAAACTAAAAAAGTC+AGG | + | chr5_3:55909451-55909470 | Msa0819440:CDS | 25.0% |
| !! | GTTTTCTATAACTTCTTACA+TGG | - | chr5_3:55909808-55909827 | None:intergenic | 25.0% |
| ! | GTGAAATGAGAAAAATTTGA+AGG | - | chr5_3:55909833-55909852 | None:intergenic | 25.0% |
| ! | AAACAATGATAGAAATAGAG+AGG | - | chr5_3:55909996-55910015 | None:intergenic | 25.0% |
| ! | TATAATGTAAAGACTTTAGG+TGG | - | chr5_3:55910278-55910297 | None:intergenic | 25.0% |
| ! | TTCATCAAGATACAATATAG+AGG | + | chr5_3:55910508-55910527 | Msa0819440:CDS | 25.0% |
| ! | CTATTTAGATGTAAAACTCT+TGG | + | chr5_3:55910603-55910622 | Msa0819440:intron | 25.0% |
| ! | TGCAAAATGCAAAATTAATG+CGG | - | chr5_3:55910835-55910854 | None:intergenic | 25.0% |
| !! | TTAGGTCTAAATCATTGTTT+TGG | - | chr5_3:55911194-55911213 | None:intergenic | 25.0% |
| TTTGCATTTGTGTAGTGAAA+TGG | - | chr5_3:55906360-55906379 | None:intergenic | 30.0% | |
| !! | TTTAATGGAATTGGTGATGT+GGG | - | chr5_3:55906473-55906492 | None:intergenic | 30.0% |
| ATCGATTGCTTTGCTTATTT+CGG | - | chr5_3:55906512-55906531 | None:intergenic | 30.0% | |
| TTGGAAGGATATTCAATTGA+AGG | + | chr5_3:55906586-55906605 | Msa0819440:CDS | 30.0% | |
| TCAATTGAAGGAGTTTCAAT+TGG | + | chr5_3:55906598-55906617 | Msa0819440:CDS | 30.0% | |
| ! | TCAAAAGCACATTTAAACTC+AGG | - | chr5_3:55906649-55906668 | None:intergenic | 30.0% |
| !!! | TGTTTGTGCTTTATTTTTCC+AGG | + | chr5_3:55906877-55906896 | Msa0819440:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | + | chr5_3:55907070-55907089 | Msa0819440:intron | 30.0% |
| ATTGATATTGATGCTCATCA+TGG | + | chr5_3:55907181-55907200 | Msa0819440:intron | 30.0% | |
| !!! | ACTAGTAGGGTTTTAAACAA+AGG | + | chr5_3:55907445-55907464 | Msa0819440:intron | 30.0% |
| TTGACTTAGATGAATAAAGG+AGG | + | chr5_3:55907783-55907802 | Msa0819440:intron | 30.0% | |
| TGACTTAGATGAATAAAGGA+GGG | + | chr5_3:55907784-55907803 | Msa0819440:intron | 30.0% | |
| !! | TAGAGGTTCTGAAGAAATTA+AGG | + | chr5_3:55907854-55907873 | Msa0819440:intron | 30.0% |
| ATACATTGTAGGTCTACTAT+AGG | - | chr5_3:55908020-55908039 | None:intergenic | 30.0% | |
| GTAACTTTCTACTAGAACAA+AGG | + | chr5_3:55908141-55908160 | Msa0819440:intron | 30.0% | |
| TATCATATCATGTACAACTC+AGG | + | chr5_3:55908202-55908221 | Msa0819440:intron | 30.0% | |
| AACGTTTACAACAATACACA+TGG | - | chr5_3:55908271-55908290 | None:intergenic | 30.0% | |
| ! | TGATTTTGAATGATTTAGGG+AGG | + | chr5_3:55908425-55908444 | Msa0819440:intron | 30.0% |
| ! | GATTTTGAATGATTTAGGGA+GGG | + | chr5_3:55908426-55908445 | Msa0819440:intron | 30.0% |
| AAATTGTGAATTGGTTGCTT+TGG | + | chr5_3:55908577-55908596 | Msa0819440:CDS | 30.0% | |
| ! | ATAACATGTTGTGTTCTGAA+TGG | - | chr5_3:55908720-55908739 | None:intergenic | 30.0% |
| ! | GCATTTTCAAACAAAGTTCA+TGG | + | chr5_3:55908784-55908803 | Msa0819440:intron | 30.0% |
| ! | AAACGGAAAAGATAGGTTTT+AGG | - | chr5_3:55909080-55909099 | None:intergenic | 30.0% |
| ! | TAAAACCTATCTTTTCCGTT+TGG | + | chr5_3:55909079-55909098 | Msa0819440:intron | 30.0% |
| ! | AAAACCTATCTTTTCCGTTT+GGG | + | chr5_3:55909080-55909099 | Msa0819440:intron | 30.0% |
| CATGAGAAATGGTAAAACTT+TGG | + | chr5_3:55909112-55909131 | Msa0819440:intron | 30.0% | |
| ACAATGGATATGTTGTCAAA+TGG | + | chr5_3:55909173-55909192 | Msa0819440:intron | 30.0% | |
| CAATGGATATGTTGTCAAAT+GGG | + | chr5_3:55909174-55909193 | Msa0819440:intron | 30.0% | |
| GTTATATAGTCTACTCAATC+AGG | + | chr5_3:55909386-55909405 | Msa0819440:CDS | 30.0% | |
| TAAAAGATTGTGTTGTACCT+CGG | - | chr5_3:55909664-55909683 | None:intergenic | 30.0% | |
| !! | CATCTATTTCTATGGATTTC+AGG | - | chr5_3:55909745-55909764 | None:intergenic | 30.0% |
| AGATGTTAAGAAATCAAGCA+TGG | + | chr5_3:55909760-55909779 | Msa0819440:intron | 30.0% | |
| GATGTTAAGAAATCAAGCAT+GGG | + | chr5_3:55909761-55909780 | Msa0819440:intron | 30.0% | |
| ATGTTAAGAAATCAAGCATG+GGG | + | chr5_3:55909762-55909781 | Msa0819440:intron | 30.0% | |
| GATAGAAATAGAGAGGAATA+GGG | - | chr5_3:55909989-55910008 | None:intergenic | 30.0% | |
| TGATAGAAATAGAGAGGAAT+AGG | - | chr5_3:55909990-55910009 | None:intergenic | 30.0% | |
| TCATGTTACCTCAGATATAT+GGG | - | chr5_3:55910106-55910125 | None:intergenic | 30.0% | |
| CAACTTTGTAGACAAAATCA+AGG | + | chr5_3:55910146-55910165 | Msa0819440:intron | 30.0% | |
| TGGATAATCAGCTATATACT+TGG | - | chr5_3:55910307-55910326 | None:intergenic | 30.0% | |
| TTTAGATGTAAAACTCTTGG+CGG | + | chr5_3:55910606-55910625 | Msa0819440:intron | 30.0% | |
| TTGTTCAAAATAGTGCATTG+CGG | - | chr5_3:55910716-55910735 | None:intergenic | 30.0% | |
| GTTCAAATTCTGCTATACTA+TGG | - | chr5_3:55910754-55910773 | None:intergenic | 30.0% | |
| AAAATAAGCACTTTAACTGC+AGG | + | chr5_3:55910890-55910909 | Msa0819440:intron | 30.0% | |
| CTTCAAATCACAATACACAT+AGG | + | chr5_3:55910980-55910999 | Msa0819440:CDS | 30.0% | |
| ATTTGAGAGGATGAAGGAAA+GGG | - | chr5_3:55906315-55906334 | None:intergenic | 35.0% | |
| TGAAATGGGAAAATTTGTGG+GGG | - | chr5_3:55906409-55906428 | None:intergenic | 35.0% | |
| GTGAAATGGGAAAATTTGTG+GGG | - | chr5_3:55906410-55906429 | None:intergenic | 35.0% | |
| GGTGAAATGGGAAAATTTGT+GGG | - | chr5_3:55906411-55906430 | None:intergenic | 35.0% | |
| TGGTGAAATGGGAAAATTTG+TGG | - | chr5_3:55906412-55906431 | None:intergenic | 35.0% | |
| !!! | GAAAGTTGTTGTTTTGGAGA+GGG | - | chr5_3:55906442-55906461 | None:intergenic | 35.0% |
| !! | CTTTAATGGAATTGGTGATG+TGG | - | chr5_3:55906474-55906493 | None:intergenic | 35.0% |
| CACATCACCAATTCCATTAA+AGG | + | chr5_3:55906472-55906491 | Msa0819440:CDS | 35.0% | |
| ACCAATTCCATTAAAGGATC+AGG | + | chr5_3:55906478-55906497 | Msa0819440:CDS | 35.0% | |
| ACCTGATCCTTTAATGGAAT+TGG | - | chr5_3:55906482-55906501 | None:intergenic | 35.0% | |
| AAATCACAGGTTCAACGTAA+AGG | + | chr5_3:55906556-55906575 | Msa0819440:CDS | 35.0% | |
| ATTGAAGGAGTTTCAATTGG+TGG | + | chr5_3:55906601-55906620 | Msa0819440:CDS | 35.0% | |
| !! | TTCTGATGAATAGCTCTAGT+GGG | - | chr5_3:55906685-55906704 | None:intergenic | 35.0% |
| !! | ATTCTGATGAATAGCTCTAG+TGG | - | chr5_3:55906686-55906705 | None:intergenic | 35.0% |
| CAACAGTTATTCAATACACC+TGG | - | chr5_3:55906898-55906917 | None:intergenic | 35.0% | |
| ! | TCGCTTATATTTGAGACTAG+AGG | + | chr5_3:55906971-55906990 | Msa0819440:intron | 35.0% |
| ! | CGCTTATATTTGAGACTAGA+GGG | + | chr5_3:55906972-55906991 | Msa0819440:intron | 35.0% |
| GTATTGTCAAATAGAGTAGC+AGG | + | chr5_3:55907003-55907022 | Msa0819440:intron | 35.0% | |
| GTTATAGCATTGTAGCATAG+AGG | + | chr5_3:55907103-55907122 | Msa0819440:intron | 35.0% | |
| GAAATATACGTAGATGCTAG+AGG | + | chr5_3:55907837-55907856 | Msa0819440:intron | 35.0% | |
| ATTATTGATGAAAACTCGCG+TGG | + | chr5_3:55907989-55908008 | Msa0819440:intron | 35.0% | |
| TAGCAGGATTCATACATTGT+AGG | - | chr5_3:55908031-55908050 | None:intergenic | 35.0% | |
| ! | TGTCATTTGTCTTTCTTTCG+TGG | + | chr5_3:55908611-55908630 | Msa0819440:intron | 35.0% |
| TCAAATATTGATACCTGGCT+TGG | - | chr5_3:55908744-55908763 | None:intergenic | 35.0% | |
| ! | GAAATTTCATCCTCGTGTTT+TGG | + | chr5_3:55908896-55908915 | Msa0819440:intron | 35.0% |
| AAATCCCAAACGGAAAAGAT+AGG | - | chr5_3:55909087-55909106 | None:intergenic | 35.0% | |
| !! | TATCTTTTCCGTTTGGGATT+TGG | + | chr5_3:55909086-55909105 | Msa0819440:intron | 35.0% |
| CATATCCATTGTCACATACA+TGG | - | chr5_3:55909165-55909184 | None:intergenic | 35.0% | |
| ATCTCTTCACAAATTGCCTA+TGG | - | chr5_3:55909231-55909250 | None:intergenic | 35.0% | |
| !! | TGTGTTATACAGCGGATTTT+TGG | + | chr5_3:55909279-55909298 | Msa0819440:intron | 35.0% |
| AAGCACTATGTTGTTGTCAA+TGG | - | chr5_3:55909312-55909331 | None:intergenic | 35.0% | |
| CATGAATCATAATGCAAACC+TGG | + | chr5_3:55909349-55909368 | Msa0819440:intron | 35.0% | |
| ! | AAACCTGGTTATGTTTTGCA+GGG | + | chr5_3:55909364-55909383 | Msa0819440:intron | 35.0% |
| AAACAATACAGTCACCTGAA+CGG | + | chr5_3:55909421-55909440 | Msa0819440:CDS | 35.0% | |
| ACTAAAAAAGTCAGGTGTTC+AGG | + | chr5_3:55909459-55909478 | Msa0819440:CDS | 35.0% | |
| AGACACTATATTATCTCCTG+AGG | + | chr5_3:55909557-55909576 | Msa0819440:CDS | 35.0% | |
| ! | AACTTTTGCTCTCAATGCAT+CGG | - | chr5_3:55909634-55909653 | None:intergenic | 35.0% |
| AGCAAAAGTTCTTATAACCG+AGG | + | chr5_3:55909644-55909663 | Msa0819440:CDS | 35.0% | |
| ATATATGGGTATGACCATGT+TGG | - | chr5_3:55910092-55910111 | None:intergenic | 35.0% | |
| GTCATGTTACCTCAGATATA+TGG | - | chr5_3:55910107-55910126 | None:intergenic | 35.0% | |
| ATAGACACTTGAGTAAAACG+AGG | - | chr5_3:55910212-55910231 | None:intergenic | 35.0% | |
| TTAGATGTAAAACTCTTGGC+GGG | + | chr5_3:55910607-55910626 | Msa0819440:intron | 35.0% | |
| TAACCAATGTTGTCAAACAG+CGG | + | chr5_3:55910634-55910653 | Msa0819440:intron | 35.0% | |
| ACTGGTTACATTCTTTCTCT+AGG | - | chr5_3:55911054-55911073 | None:intergenic | 35.0% | |
| ! | TGAAGGAAAGGGTTTAGAGT+GGG | - | chr5_3:55906304-55906323 | None:intergenic | 40.0% |
| ATGAAGGAAAGGGTTTAGAG+TGG | - | chr5_3:55906305-55906324 | None:intergenic | 40.0% | |
| GATTTGAGAGGATGAAGGAA+AGG | - | chr5_3:55906316-55906335 | None:intergenic | 40.0% | |
| GAAAATTTGTGGGGGTTTGA+AGG | - | chr5_3:55906401-55906420 | None:intergenic | 40.0% | |
| AGGGAATTGTGTGGTGAAAT+GGG | - | chr5_3:55906423-55906442 | None:intergenic | 40.0% | |
| !!! | GGAAAGTTGTTGTTTTGGAG+AGG | - | chr5_3:55906443-55906462 | None:intergenic | 40.0% |
| !!! | GGGATGGAAAGTTGTTGTTT+TGG | - | chr5_3:55906448-55906467 | None:intergenic | 40.0% |
| ! | GAACCTGTGATTTTGCAACA+CGG | - | chr5_3:55906549-55906568 | None:intergenic | 40.0% |
| ACAGGTTCAACGTAAAGGTT+TGG | + | chr5_3:55906561-55906580 | Msa0819440:CDS | 40.0% | |
| TCAACGTAAAGGTTTGGACT+TGG | + | chr5_3:55906567-55906586 | Msa0819440:CDS | 40.0% | |
| ATTGGCGGTTACCAAAAGTT+GGG | - | chr5_3:55906758-55906777 | None:intergenic | 40.0% | |
| TATTGGCGGTTACCAAAAGT+TGG | - | chr5_3:55906759-55906778 | None:intergenic | 40.0% | |
| !! | CAATTTTGGCAGCAAAAGTG+CGG | - | chr5_3:55907222-55907241 | None:intergenic | 40.0% |
| GTTCAGATAGCATGCTATCA+CGG | - | chr5_3:55907556-55907575 | None:intergenic | 40.0% | |
| CCACGACTTCCTATATACAT+TGG | - | chr5_3:55908455-55908474 | None:intergenic | 40.0% | |
| CCAATGTATATAGGAAGTCG+TGG | + | chr5_3:55908452-55908471 | Msa0819440:CDS | 40.0% | |
| ! | GATGCATGGAGGTACAAATA+CGG | - | chr5_3:55908501-55908520 | None:intergenic | 40.0% |
| TCAACATCGTCTTTGATGCA+TGG | - | chr5_3:55908515-55908534 | None:intergenic | 40.0% | |
| CTTGACGTTCACAAGACATT+GGG | + | chr5_3:55908542-55908561 | Msa0819440:CDS | 40.0% | |
| ! | GAATTGGTTGCTTTGGATGT+CGG | + | chr5_3:55908584-55908603 | Msa0819440:CDS | 40.0% |
| TTTGTCTTTCTTTCGTGGTC+AGG | + | chr5_3:55908616-55908635 | Msa0819440:intron | 40.0% | |
| TTGTCTTTCTTTCGTGGTCA+GGG | + | chr5_3:55908617-55908636 | Msa0819440:intron | 40.0% | |
| CAGGGGAGACATATGAAATA+CGG | + | chr5_3:55908676-55908695 | Msa0819440:intron | 40.0% | |
| TTCTGAATGGTCGAACAACA+AGG | - | chr5_3:55908707-55908726 | None:intergenic | 40.0% | |
| ACAACATGTTATACCAAGCC+AGG | + | chr5_3:55908728-55908747 | Msa0819440:CDS | 40.0% | |
| ! | GAAAATGCTTTTGCACGAGA+AGG | - | chr5_3:55908772-55908791 | None:intergenic | 40.0% |
| AAGTTCATGGCCCAAATTAG+CGG | + | chr5_3:55908797-55908816 | Msa0819440:intron | 40.0% | |
| TAGCCCAAAACCGCTAATTT+GGG | - | chr5_3:55908810-55908829 | None:intergenic | 40.0% | |
| !!! | CGGAAAAGATAGGTTTTAGG+AGG | - | chr5_3:55909077-55909096 | None:intergenic | 40.0% |
| TCATGCATCCAAATCCCAAA+CGG | - | chr5_3:55909097-55909116 | None:intergenic | 40.0% | |
| GGATTTGGATGCATGAGAAA+TGG | + | chr5_3:55909101-55909120 | Msa0819440:intron | 40.0% | |
| TTGAGCCATGTATGTGACAA+TGG | + | chr5_3:55909157-55909176 | Msa0819440:intron | 40.0% | |
| TCTTCACAAATTGCCTATGG+TGG | - | chr5_3:55909228-55909247 | None:intergenic | 40.0% | |
| TGTATAACACAACCAGTGAC+TGG | - | chr5_3:55909270-55909289 | None:intergenic | 40.0% | |
| ! | TCACTGGTTGTGTTATACAG+CGG | + | chr5_3:55909271-55909290 | Msa0819440:intron | 40.0% |
| ATGTTGTTGTCAATGGCAGA+AGG | - | chr5_3:55909305-55909324 | None:intergenic | 40.0% | |
| ATAGTGCTTTGCAGATCTCT+TGG | + | chr5_3:55909323-55909342 | Msa0819440:intron | 40.0% | |
| ! | CAAACCTGGTTATGTTTTGC+AGG | + | chr5_3:55909363-55909382 | Msa0819440:intron | 40.0% |
| TAACCCTGCAAAACATAACC+AGG | - | chr5_3:55909370-55909389 | None:intergenic | 40.0% | |
| ACTCAATCAGGAAAAAGCTG+AGG | + | chr5_3:55909398-55909417 | Msa0819440:CDS | 40.0% | |
| AACAATACAGTCACCTGAAC+GGG | + | chr5_3:55909422-55909441 | Msa0819440:CDS | 40.0% | |
| ! | TCTCAATTTGTTTCCCGTTC+AGG | - | chr5_3:55909438-55909457 | None:intergenic | 40.0% |
| ! | TCAATGCATCGGCATTAAGT+GGG | - | chr5_3:55909623-55909642 | None:intergenic | 40.0% |
| GGTATACATGAGCTGCTTAA+AGG | - | chr5_3:55909902-55909921 | None:intergenic | 40.0% | |
| TGTATACCAGTTGACGTTGT+TGG | + | chr5_3:55909914-55909933 | Msa0819440:intron | 40.0% | |
| AGGGAGGAAGTAAGAAATCA+TGG | - | chr5_3:55909970-55909989 | None:intergenic | 40.0% | |
| AGAAATAGAGAGGAATAGGG+AGG | - | chr5_3:55909986-55910005 | None:intergenic | 40.0% | |
| CTACTGTGGTTGAATCATCT+AGG | - | chr5_3:55910059-55910078 | None:intergenic | 40.0% | |
| TGGTCATACCCATATATCTG+AGG | + | chr5_3:55910095-55910114 | Msa0819440:CDS | 40.0% | |
| CACTTGAGTAAAACGAGGAA+GGG | - | chr5_3:55910207-55910226 | None:intergenic | 40.0% | |
| ACACTTGAGTAAAACGAGGA+AGG | - | chr5_3:55910208-55910227 | None:intergenic | 40.0% | |
| AGCTCATTGAAAATGCTCAG+TGG | + | chr5_3:55910453-55910472 | Msa0819440:intron | 40.0% | |
| ATAGACTTGCATCCCTCAAA+TGG | + | chr5_3:55910563-55910582 | Msa0819440:intron | 40.0% | |
| TAGACTTGCATCCCTCAAAT+GGG | + | chr5_3:55910564-55910583 | Msa0819440:intron | 40.0% | |
| TGCACATATGACCCATTTGA+GGG | - | chr5_3:55910578-55910597 | None:intergenic | 40.0% | |
| ATGCACATATGACCCATTTG+AGG | - | chr5_3:55910579-55910598 | None:intergenic | 40.0% | |
| TAGATGTAAAACTCTTGGCG+GGG | + | chr5_3:55910608-55910627 | Msa0819440:intron | 40.0% | |
| TTGTGTTCCACGATTGTCAT+TGG | + | chr5_3:55910785-55910804 | Msa0819440:intron | 40.0% | |
| TGTGTTCCACGATTGTCATT+GGG | + | chr5_3:55910786-55910805 | Msa0819440:intron | 40.0% | |
| !! | AATTAATGCGGTGCTACTAG+AGG | - | chr5_3:55910823-55910842 | None:intergenic | 40.0% |
| !! | AACCACTTTTGCTGAAGTCT+TGG | - | chr5_3:55910946-55910965 | None:intergenic | 40.0% |
| AAAGTGGTTCCACTTACAGA+AGG | + | chr5_3:55910957-55910976 | Msa0819440:CDS | 40.0% | |
| ! | GATTTGAAGCCTTCTGTAAG+TGG | - | chr5_3:55910969-55910988 | None:intergenic | 40.0% |
| GCTCATTGATACACGGATAA+TGG | - | chr5_3:55911030-55911049 | None:intergenic | 40.0% | |
| TCTAGGTGCTCATTGATACA+CGG | - | chr5_3:55911037-55911056 | None:intergenic | 40.0% | |
| ACGATGGTTGTGTTGTGTTG+TGG | - | chr5_3:55906249-55906268 | None:intergenic | 45.0% | |
| GAGACAGTGATGAATGACGA+TGG | - | chr5_3:55906265-55906284 | None:intergenic | 45.0% | |
| CCATGGATTTGAGAGGATGA+AGG | - | chr5_3:55906321-55906340 | None:intergenic | 45.0% | |
| CCTTCATCCTCTCAAATCCA+TGG | + | chr5_3:55906318-55906337 | Msa0819440:exon | 45.0% | |
| AGAGTTGCCATGGATTTGAG+AGG | - | chr5_3:55906328-55906347 | None:intergenic | 45.0% | |
| TGTGTAGTGAAATGGCGAAG+TGG | - | chr5_3:55906352-55906371 | None:intergenic | 45.0% | |
| ATTTGTGGGGGTTTGAAGGT+GGG | - | chr5_3:55906397-55906416 | None:intergenic | 45.0% | |
| AATTTGTGGGGGTTTGAAGG+TGG | - | chr5_3:55906398-55906417 | None:intergenic | 45.0% | |
| GAGGGAATTGTGTGGTGAAA+TGG | - | chr5_3:55906424-55906443 | None:intergenic | 45.0% | |
| !!! | GTTTTGGAGAGGGAATTGTG+TGG | - | chr5_3:55906432-55906451 | None:intergenic | 45.0% |
| !! | TGGAATTGGTGATGTGGGTT+GGG | - | chr5_3:55906468-55906487 | None:intergenic | 45.0% |
| !! | ATGGAATTGGTGATGTGGGT+TGG | - | chr5_3:55906469-55906488 | None:intergenic | 45.0% |
| GTACCGTGTTGCAAAATCAC+AGG | + | chr5_3:55906543-55906562 | Msa0819440:CDS | 45.0% | |
| CGTAAAGGTTTGGACTTGGA+AGG | + | chr5_3:55906571-55906590 | Msa0819440:CDS | 45.0% | |
| AGCTAGTGTCGTACGAATGT+CGG | + | chr5_3:55906825-55906844 | Msa0819440:intron | 45.0% | |
| CGAGAGACACGGCTAATTTA+AGG | + | chr5_3:55906852-55906871 | Msa0819440:intron | 45.0% | |
| TGTTGTCAAATAGCGGCTGT+AGG | + | chr5_3:55907077-55907096 | Msa0819440:intron | 45.0% | |
| ! | GACACACACACACACACTTT+TGG | + | chr5_3:55907283-55907302 | Msa0819440:intron | 45.0% |
| ATCCTCAGTTGCATTTGACC+AGG | + | chr5_3:55907525-55907544 | Msa0819440:intron | 45.0% | |
| ATCCTGGTCAAATGCAACTG+AGG | - | chr5_3:55907530-55907549 | None:intergenic | 45.0% | |
| !! | TGGGTTAGTATTAGGGGAAG+AGG | + | chr5_3:55907635-55907654 | Msa0819440:intron | 45.0% |
| TGATGAAAACTCGCGTGGAA+AGG | + | chr5_3:55907994-55908013 | Msa0819440:intron | 45.0% | |
| TATAGAGTTCTCGCTGTAGC+AGG | - | chr5_3:55908047-55908066 | None:intergenic | 45.0% | |
| CAACTCAGGTAATCTACTGC+TGG | + | chr5_3:55908216-55908235 | Msa0819440:intron | 45.0% | |
| ! | CATGGAGGTACAAATACGGT+GGG | - | chr5_3:55908497-55908516 | None:intergenic | 45.0% |
| ACATCGTCTTTGATGCATGG+AGG | - | chr5_3:55908512-55908531 | None:intergenic | 45.0% | |
| GCTTGACGTTCACAAGACAT+TGG | + | chr5_3:55908541-55908560 | Msa0819440:CDS | 45.0% | |
| TGTCTTTCTTTCGTGGTCAG+GGG | + | chr5_3:55908618-55908637 | Msa0819440:intron | 45.0% | |
| ! | ATGGCCCAAATTAGCGGTTT+TGG | + | chr5_3:55908803-55908822 | Msa0819440:intron | 45.0% |
| ! | TGGCCCAAATTAGCGGTTTT+GGG | + | chr5_3:55908804-55908823 | Msa0819440:intron | 45.0% |
| GTAGCCCAAAACCGCTAATT+TGG | - | chr5_3:55908811-55908830 | None:intergenic | 45.0% | |
| TGTTTCATGGCCAAAACACG+AGG | - | chr5_3:55908909-55908928 | None:intergenic | 45.0% | |
| ! | ATGTTGTCAAATGGGTGCTG+CGG | + | chr5_3:55909182-55909201 | Msa0819440:intron | 45.0% |
| TGATGTTGTATCCCCAGTGA+AGG | - | chr5_3:55909586-55909605 | None:intergenic | 45.0% | |
| ! | CTCAATGCATCGGCATTAAG+TGG | - | chr5_3:55909624-55909643 | None:intergenic | 45.0% |
| ACAACTCCAACAACGTCAAC+TGG | - | chr5_3:55909923-55909942 | None:intergenic | 45.0% | |
| AGATGTAAAACTCTTGGCGG+GGG | + | chr5_3:55910609-55910628 | Msa0819440:intron | 45.0% | |
| TAGCCGCTGTTTGACAACAT+TGG | - | chr5_3:55910640-55910659 | None:intergenic | 45.0% | |
| TGTTGTCAAACAGCGGCTAT+AGG | + | chr5_3:55910641-55910660 | Msa0819440:intron | 45.0% | |
| GTTGTCAAACAGCGGCTATA+GGG | + | chr5_3:55910642-55910661 | Msa0819440:intron | 45.0% | |
| ! | GCTGTATTGCTATTGCGCAA+TGG | + | chr5_3:55910667-55910686 | Msa0819440:intron | 45.0% |
| GTCCAAGACTTCAGCAAAAG+TGG | + | chr5_3:55910941-55910960 | Msa0819440:CDS | 45.0% | |
| TGAAGGTGGGGTTTGTGAGA+GGG | - | chr5_3:55906384-55906403 | None:intergenic | 50.0% | |
| TTGAAGGTGGGGTTTGTGAG+AGG | - | chr5_3:55906385-55906404 | None:intergenic | 50.0% | |
| TTTGTGGGGGTTTGAAGGTG+GGG | - | chr5_3:55906396-55906415 | None:intergenic | 50.0% | |
| !! | ATTGGTGATGTGGGTTGGGA+TGG | - | chr5_3:55906464-55906483 | None:intergenic | 50.0% |
| ATGTCGGACATCGAGAGACA+CGG | + | chr5_3:55906841-55906860 | Msa0819440:intron | 50.0% | |
| AACTGAGGATGCAGCACTTG+CGG | - | chr5_3:55907515-55907534 | None:intergenic | 50.0% | |
| CATGCTATCACGGAGAATCC+TGG | - | chr5_3:55907546-55907565 | None:intergenic | 50.0% | |
| GGAGGGCTGCCAATGTATAT+AGG | + | chr5_3:55908443-55908462 | Msa0819440:CDS | 50.0% | |
| ! | GCATGGAGGTACAAATACGG+TGG | - | chr5_3:55908498-55908517 | None:intergenic | 50.0% |
| GTGGTCAGGGGTTATCTTTG+AGG | + | chr5_3:55908630-55908649 | Msa0819440:intron | 50.0% | |
| TGAAGAGATGCCCACCATAC+CGG | + | chr5_3:55909242-55909261 | Msa0819440:intron | 50.0% | |
| AGACAAAATCAAGGTGCGCG+AGG | + | chr5_3:55910155-55910174 | Msa0819440:intron | 50.0% | |
| CAGAGCGTGTATGCAGTTCT+AGG | - | chr5_3:55910390-55910409 | None:intergenic | 50.0% | |
| GGTATGCCCAATGACAATCG+TGG | - | chr5_3:55910795-55910814 | None:intergenic | 50.0% | |
| !! | GCGGTGCTACTAGAGGTTAA+TGG | - | chr5_3:55910816-55910835 | None:intergenic | 50.0% |
| GCGAAGTGGAAGAGTTGCCA+TGG | - | chr5_3:55906338-55906357 | None:intergenic | 55.0% | |
| ! | GGAGGTACAAATACGGTGGG+AGG | - | chr5_3:55908494-55908513 | None:intergenic | 55.0% |
| TCTCCTGAGGTAGCCTTCAC+TGG | + | chr5_3:55909570-55909589 | Msa0819440:CDS | 55.0% | |
| CTCCTGAGGTAGCCTTCACT+GGG | + | chr5_3:55909571-55909590 | Msa0819440:CDS | 55.0% | |
| TCCTGAGGTAGCCTTCACTG+GGG | + | chr5_3:55909572-55909591 | Msa0819440:CDS | 55.0% | |
| TTGGCGTGCATGCTCTACTG+TGG | - | chr5_3:55910073-55910092 | None:intergenic | 55.0% | |
| GTAGAGCATGCACGCCAACA+TGG | + | chr5_3:55910075-55910094 | Msa0819440:CDS | 55.0% | |
| ACACAACCAGTGACTGGCGC+CGG | - | chr5_3:55909264-55909283 | None:intergenic | 60.0% | |
| TCCCCAGTGAAGGCTACCTC+AGG | - | chr5_3:55909576-55909595 | None:intergenic | 60.0% | |
| ! | AGGAAGGGCGTGCATGAGAG+AGG | - | chr5_3:55910192-55910211 | None:intergenic | 60.0% |
| !! | GTGACTGGCGCCGGTATGGT+GGG | - | chr5_3:55909255-55909274 | None:intergenic | 65.0% |
| !! | AGTGACTGGCGCCGGTATGG+TGG | - | chr5_3:55909256-55909275 | None:intergenic | 65.0% |
| ACCATACCGGCGCCAGTCAC+TGG | + | chr5_3:55909255-55909274 | Msa0819440:intron | 65.0% | |
| !! | ACCAGTGACTGGCGCCGGTA+TGG | - | chr5_3:55909259-55909278 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55906246 | 55911218 | 55906246 | ID=Msa0819440;Name=Msa0819440 |
| chr5_3 | mRNA | 55906246 | 55911218 | 55906246 | ID=Msa0819440-mRNA-1;Parent=Msa0819440;Name=Msa0819440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=91|1|1|1|1|1|8|217|360 |
| chr5_3 | exon | 55906246 | 55906741 | 55906246 | ID=Msa0819440-mRNA-1:exon:16902;Parent=Msa0819440-mRNA-1 |
| chr5_3 | exon | 55908443 | 55908605 | 55908443 | ID=Msa0819440-mRNA-1:exon:16903;Parent=Msa0819440-mRNA-1 |
| chr5_3 | exon | 55908679 | 55908749 | 55908679 | ID=Msa0819440-mRNA-1:exon:16904;Parent=Msa0819440-mRNA-1 |
| chr5_3 | exon | 55909385 | 55909480 | 55909385 | ID=Msa0819440-mRNA-1:exon:16905;Parent=Msa0819440-mRNA-1 |
| chr5_3 | exon | 55909552 | 55909665 | 55909552 | ID=Msa0819440-mRNA-1:exon:16906;Parent=Msa0819440-mRNA-1 |
| chr5_3 | exon | 55910048 | 55910116 | 55910048 | ID=Msa0819440-mRNA-1:exon:16907;Parent=Msa0819440-mRNA-1 |
| chr5_3 | exon | 55910455 | 55910529 | 55910455 | ID=Msa0819440-mRNA-1:exon:16908;Parent=Msa0819440-mRNA-1 |
| chr5_3 | exon | 55910912 | 55911218 | 55910912 | ID=Msa0819440-mRNA-1:exon:16909;Parent=Msa0819440-mRNA-1 |
| chr5_3 | five_prime_UTR | 55906246 | 55906336 | 55906246 | ID=Msa0819440-mRNA-1:five_prime_utr;Parent=Msa0819440-mRNA-1 |
| chr5_3 | CDS | 55906337 | 55906741 | 55906337 | ID=Msa0819440-mRNA-1:cds;Parent=Msa0819440-mRNA-1 |
| chr5_3 | CDS | 55908443 | 55908605 | 55908443 | ID=Msa0819440-mRNA-1:cds;Parent=Msa0819440-mRNA-1 |
| chr5_3 | CDS | 55908679 | 55908749 | 55908679 | ID=Msa0819440-mRNA-1:cds;Parent=Msa0819440-mRNA-1 |
| chr5_3 | CDS | 55909385 | 55909480 | 55909385 | ID=Msa0819440-mRNA-1:cds;Parent=Msa0819440-mRNA-1 |
| chr5_3 | CDS | 55909552 | 55909665 | 55909552 | ID=Msa0819440-mRNA-1:cds;Parent=Msa0819440-mRNA-1 |
| chr5_3 | CDS | 55910048 | 55910116 | 55910048 | ID=Msa0819440-mRNA-1:cds;Parent=Msa0819440-mRNA-1 |
| chr5_3 | CDS | 55910455 | 55910529 | 55910455 | ID=Msa0819440-mRNA-1:cds;Parent=Msa0819440-mRNA-1 |
| chr5_3 | CDS | 55910912 | 55911001 | 55910912 | ID=Msa0819440-mRNA-1:cds;Parent=Msa0819440-mRNA-1 |
| chr5_3 | three_prime_UTR | 55911002 | 55911218 | 55911002 | ID=Msa0819440-mRNA-1:three_prime_utr;Parent=Msa0819440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
