Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738490 | KEH40605.1 | 77.778 | 90 | 20 | 0 | 35 | 124 | 155 | 244 | 2.32e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738490 | A0A072VR35 | 77.778 | 90 | 20 | 0 | 35 | 124 | 155 | 244 | 1.11e-24 | 104 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0733290 | Msa0738490 | 0.801973 | 6.992009e-49 | -8.615850e-47 |
| Msa0738490 | Msa0743810 | 0.835735 | 1.411005e-56 | -8.615850e-47 |
| Msa0738490 | Msa0783160 | 0.825099 | 5.639311e-54 | -8.615850e-47 |
| Msa0738490 | Msa0808010 | 0.815456 | 9.159405e-52 | -8.615850e-47 |
| Msa0738490 | Msa0808020 | 0.808740 | 2.669180e-50 | -8.615850e-47 |
| Msa0738490 | Msa0825860 | 0.806492 | 8.014129e-50 | -8.615850e-47 |
| Msa0738490 | Msa0854980 | 0.802436 | 5.615715e-49 | -8.615850e-47 |
| Msa0738490 | Msa0888370 | 0.825214 | 5.295708e-54 | -8.615850e-47 |
| Msa0738490 | Msa0989060 | 0.816318 | 5.882936e-52 | -8.615850e-47 |
| Msa0738490 | Msa1016280 | 0.807365 | 5.236815e-50 | -8.615850e-47 |
| Msa0738490 | Msa1025360 | 0.813178 | 2.919686e-51 | -8.615850e-47 |
| Msa0738490 | Msa1025370 | 0.806407 | 8.350163e-50 | -8.615850e-47 |
| Msa0738490 | Msa1044830 | 0.802910 | 4.482677e-49 | -8.615850e-47 |
| Msa0738490 | Msa1044840 | 0.813539 | 2.431416e-51 | -8.615850e-47 |
| Msa0738490 | Msa1060840 | 0.802223 | 6.211629e-49 | -8.615850e-47 |
| Msa0738490 | Msa1092990 | 0.811443 | 6.981780e-51 | -8.615850e-47 |
| Msa0738490 | Msa1100980 | 0.811902 | 5.548153e-51 | -8.615850e-47 |
| Msa0738490 | Msa1135740 | 0.810784 | 9.705322e-51 | -8.615850e-47 |
| Msa0738490 | Msa1248300 | 0.818185 | 2.236771e-52 | -8.615850e-47 |
| Msa0738490 | Msa1270230 | 0.801758 | 7.740938e-49 | -8.615850e-47 |
| Msa0738490 | Msa1287800 | 0.805220 | 1.482871e-49 | -8.615850e-47 |
| Msa0738490 | Msa1287810 | 0.810183 | 1.308074e-50 | -8.615850e-47 |
| Msa0738490 | Msa1397580 | 0.800763 | 1.237101e-48 | -8.615850e-47 |
| Msa0738490 | Msa1422180 | 0.809235 | 2.092113e-50 | -8.615850e-47 |
| Msa0200000 | Msa0738490 | 0.807200 | 5.676449e-50 | -8.615850e-47 |
| Msa0232850 | Msa0738490 | 0.822611 | 2.159681e-53 | -8.615850e-47 |
| Msa0450000 | Msa0738490 | 0.804592 | 2.006312e-49 | -8.615850e-47 |
| Msa0452900 | Msa0738490 | 0.807362 | 5.246340e-50 | -8.615850e-47 |
| Msa0267000 | Msa0738490 | 0.808371 | 3.200895e-50 | -8.615850e-47 |
| Msa0267010 | Msa0738490 | 0.818651 | 1.753917e-52 | -8.615850e-47 |
| Msa0491590 | Msa0738490 | 0.808920 | 2.443190e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738490 | MtrunA17_Chr1g0161101 | 78.947 | 114 | 22 | 1 | 11 | 124 | 226 | 337 | 5.21e-28 | 106 |
| Msa0738490 | MtrunA17_Chr3g0113171 | 84.536 | 97 | 11 | 3 | 30 | 124 | 195 | 289 | 6.67e-20 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCGTGGCGGCGGCGGTGG+TGG | 0.128617 | 5_1:-56245871 | None:intergenic |
| TGAATCGATGAAGGGGTTTA+TGG | 0.192159 | 5_1:+56244785 | Msa0738490:CDS |
| CTAGCTGTTGGTGCTGCTGC+TGG | 0.243784 | 5_1:+56246015 | Msa0738490:CDS |
| TGGTGCTGCTGCTGGGGCGC+TGG | 0.267876 | 5_1:+56246023 | Msa0738490:CDS |
| AGAATAGTTATCAGAGTAAT+TGG | 0.289357 | 5_1:-56245806 | None:intergenic |
| GAGGCCAAAAGGTGGTAAAA+TGG | 0.293923 | 5_1:+56245978 | Msa0738490:CDS |
| CGCCCTTTCTTTGAACATAC+TGG | 0.306554 | 5_1:+56245889 | Msa0738490:CDS |
| GGTGCTGCTGCTGGGGCGCT+GGG | 0.338151 | 5_1:+56246024 | Msa0738490:CDS |
| AAAGGGCGTGGCGGCGGCGG+TGG | 0.348272 | 5_1:-56245874 | None:intergenic |
| TAGCTGTTGGTGCTGCTGCT+GGG | 0.354912 | 5_1:+56246016 | Msa0738490:CDS |
| TCTAGTGGCAGTTACTTTCT+CGG | 0.386270 | 5_1:+56245826 | Msa0738490:CDS |
| GAATCGATGAAGGGGTTTAT+GGG | 0.386700 | 5_1:+56244786 | Msa0738490:CDS |
| TACTTTCTCGGTTATCATCC+TGG | 0.408329 | 5_1:+56245838 | Msa0738490:CDS |
| GGCGCTGGGTGGACTTGCTA+TGG | 0.408660 | 5_1:+56246038 | Msa0738490:CDS |
| GGCGTGGCGGCGGCGGTGGT+GGG | 0.423345 | 5_1:-56245870 | None:intergenic |
| CTTCCAGTATGTTCAAAGAA+AGG | 0.425309 | 5_1:-56245892 | None:intergenic |
| AAGAAAGGGCGTGGCGGCGG+CGG | 0.451143 | 5_1:-56245877 | None:intergenic |
| GCTGCTGCTGGGGCGCTGGG+TGG | 0.457405 | 5_1:+56246027 | Msa0738490:CDS |
| AGCTGTTGGTGCTGCTGCTG+GGG | 0.458310 | 5_1:+56246017 | Msa0738490:CDS |
| TTCCAGTATGTTCAAAGAAA+GGG | 0.459030 | 5_1:-56245891 | None:intergenic |
| AGGCCAAAAGGTGGTAAAAT+GGG | 0.470375 | 5_1:+56245979 | Msa0738490:CDS |
| GGTAAAATGGGCTTAGGAGA+TGG | 0.475548 | 5_1:+56245991 | Msa0738490:CDS |
| ACTGGAAGTTATGCTGCTGC+TGG | 0.478784 | 5_1:+56245907 | Msa0738490:CDS |
| GGTGGACTTGCTATGGAAGA+AGG | 0.490314 | 5_1:+56246045 | Msa0738490:CDS |
| CTGGAAGTTATGCTGCTGCT+GGG | 0.500511 | 5_1:+56245908 | Msa0738490:CDS |
| AAAGGTGGTAAAATGGGCTT+AGG | 0.510271 | 5_1:+56245985 | Msa0738490:CDS |
| TCAAAGAAAGGGCGTGGCGG+CGG | 0.510398 | 5_1:-56245880 | None:intergenic |
| TCGTTTGATCCGAGGCCAAA+AGG | 0.511968 | 5_1:+56245967 | Msa0738490:CDS |
| GAATATTCAAGCGGCGCATA+CGG | 0.513531 | 5_1:-56245940 | None:intergenic |
| GGAGAAGGTTGAATCGATGA+AGG | 0.524777 | 5_1:+56244776 | Msa0738490:CDS |
| TTAGGAGATGGACTAGCTGT+TGG | 0.531014 | 5_1:+56246003 | Msa0738490:CDS |
| TATGCTGCTGCTGGGCCTAG+TGG | 0.558280 | 5_1:+56245916 | Msa0738490:CDS |
| TAATGTGAAGGTGAAGGTGG+TGG | 0.559064 | 5_1:-56245772 | None:intergenic |
| GAAGGTGAAGGTGGTGGAGA+AGG | 0.563025 | 5_1:-56245766 | None:intergenic |
| GAGAAGGTTGAATCGATGAA+GGG | 0.566688 | 5_1:+56244777 | Msa0738490:CDS |
| CGAGAAATCATGTATGGAGA+AGG | 0.575432 | 5_1:+56244761 | None:intergenic |
| GTATGTTCAAAGAAAGGGCG+TGG | 0.583337 | 5_1:-56245886 | None:intergenic |
| TTGCTATGGAAGAAGGGATG+AGG | 0.584320 | 5_1:+56246052 | Msa0738490:CDS |
| GGTGGTGGGTAAGCACCACC+AGG | 0.586295 | 5_1:-56245856 | None:intergenic |
| TACTCTGATAACTATTCTAG+TGG | 0.594918 | 5_1:+56245811 | Msa0738490:CDS |
| ATTCGTCCTCGTTTGATCCG+AGG | 0.596452 | 5_1:+56245959 | Msa0738490:CDS |
| AGCGGCGCATACGGTCCACT+AGG | 0.598979 | 5_1:-56245931 | None:intergenic |
| GTGGACTTGCTATGGAAGAA+GGG | 0.605661 | 5_1:+56246046 | Msa0738490:CDS |
| TTGTAATGTGAAGGTGAAGG+TGG | 0.610743 | 5_1:-56245775 | None:intergenic |
| AGAAGGTTGAATCGATGAAG+GGG | 0.612630 | 5_1:+56244778 | Msa0738490:CDS |
| GTGTAGTAATTGTAATGTGA+AGG | 0.652603 | 5_1:-56245784 | None:intergenic |
| TTTCTCGGTTATCATCCTGG+TGG | 0.663858 | 5_1:+56245841 | Msa0738490:CDS |
| AACGAGGACGAATATTCAAG+CGG | 0.682229 | 5_1:-56245949 | None:intergenic |
| TTTGATCCGAGGCCAAAAGG+TGG | 0.694778 | 5_1:+56245970 | Msa0738490:CDS |
| TGTTCAAAGAAAGGGCGTGG+CGG | 0.701730 | 5_1:-56245883 | None:intergenic |
| TAATTGTAATGTGAAGGTGA+AGG | 0.736699 | 5_1:-56245778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAAAAAAAACGAAAT+TGG | + | chr5_1:56244979-56244998 | Msa0738490:intron | 10.0% |
| !! | TTAAAAATAAAAATCGAAAT+TGG | + | chr5_1:56245019-56245038 | Msa0738490:intron | 10.0% |
| !! | TTAATAAAAAAAAACGAAAT+TGG | + | chr5_1:56244979-56244998 | Msa0738490:intron | 10.0% |
| !! | TTAAAAATAAAAATCGAAAT+TGG | + | chr5_1:56245019-56245038 | Msa0738490:intron | 10.0% |
| !! | TGAAGAAAAAAAAATGAAAT+AGG | + | chr5_1:56245068-56245087 | Msa0738490:intron | 15.0% |
| !! | GAAGAAAAAAAAATGAAATA+GGG | + | chr5_1:56245069-56245088 | Msa0738490:intron | 15.0% |
| !! | AAGAAAAAAAAATGAAATAG+GGG | + | chr5_1:56245070-56245089 | Msa0738490:intron | 15.0% |
| !!! | CATACACATTTTTTAAATTT+AGG | + | chr5_1:56245291-56245310 | Msa0738490:intron | 15.0% |
| !! | TGAAGAAAAAAAAATGAAAT+AGG | + | chr5_1:56245068-56245087 | Msa0738490:intron | 15.0% |
| !! | GAAGAAAAAAAAATGAAATA+GGG | + | chr5_1:56245069-56245088 | Msa0738490:intron | 15.0% |
| !! | AAGAAAAAAAAATGAAATAG+GGG | + | chr5_1:56245070-56245089 | Msa0738490:intron | 15.0% |
| !!! | CATACACATTTTTTAAATTT+AGG | + | chr5_1:56245291-56245310 | Msa0738490:intron | 15.0% |
| !! | AAAAAAAACATTTAGTTGAC+TGG | + | chr5_1:56244953-56244972 | Msa0738490:intron | 20.0% |
| !! | AAAAAAACATTTAGTTGACT+GGG | + | chr5_1:56244954-56244973 | Msa0738490:intron | 20.0% |
| !! | ACAGCAAAAAAAAATGAAAT+AGG | + | chr5_1:56245044-56245063 | Msa0738490:intron | 20.0% |
| !! | AGAAAAAAAAATGAAATAGG+GGG | + | chr5_1:56245071-56245090 | Msa0738490:intron | 20.0% |
| !! | TGTGTATGATTAAAGTTATA+CGG | - | chr5_1:56245279-56245298 | None:intergenic | 20.0% |
| !! | TTTAGGCTTAAATAAGTAAA+AGG | + | chr5_1:56245308-56245327 | Msa0738490:intron | 20.0% |
| !!! | CAAAAATGTATTTTTACACA+GGG | + | chr5_1:56245529-56245548 | Msa0738490:intron | 20.0% |
| !! | AAAAAAAACATTTAGTTGAC+TGG | + | chr5_1:56244953-56244972 | Msa0738490:intron | 20.0% |
| !! | AAAAAAACATTTAGTTGACT+GGG | + | chr5_1:56244954-56244973 | Msa0738490:intron | 20.0% |
| !! | ACAGCAAAAAAAAATGAAAT+AGG | + | chr5_1:56245044-56245063 | Msa0738490:intron | 20.0% |
| !! | AGAAAAAAAAATGAAATAGG+GGG | + | chr5_1:56245071-56245090 | Msa0738490:intron | 20.0% |
| !! | TGTGTATGATTAAAGTTATA+CGG | - | chr5_1:56245279-56245298 | None:intergenic | 20.0% |
| !! | TTTAGGCTTAAATAAGTAAA+AGG | + | chr5_1:56245308-56245327 | Msa0738490:intron | 20.0% |
| !!! | CAAAAATGTATTTTTACACA+GGG | + | chr5_1:56245529-56245548 | Msa0738490:intron | 20.0% |
| ! | GAAAAAAAAATGAAATAGGG+GGG | + | chr5_1:56245072-56245091 | Msa0738490:intron | 25.0% |
| ! | TCGCAAGAAAAAAACTTATA+GGG | - | chr5_1:56245366-56245385 | None:intergenic | 25.0% |
| ! | TTCGCAAGAAAAAAACTTAT+AGG | - | chr5_1:56245367-56245386 | None:intergenic | 25.0% |
| !!! | CCAACAAACCATTTTTTTAA+CGG | - | chr5_1:56245437-56245456 | None:intergenic | 25.0% |
| !! | CCTGTGTAAAAATACATTTT+TGG | - | chr5_1:56245531-56245550 | None:intergenic | 25.0% |
| !!! | CCAAAAATGTATTTTTACAC+AGG | + | chr5_1:56245528-56245547 | Msa0738490:intron | 25.0% |
| ! | AAGAATGAAAGATAATAGAG+AGG | - | chr5_1:56245618-56245637 | None:intergenic | 25.0% |
| ! | AGAATAGTTATCAGAGTAAT+TGG | - | chr5_1:56245809-56245828 | None:intergenic | 25.0% |
| ! | GAAAAAAAAATGAAATAGGG+GGG | + | chr5_1:56245072-56245091 | Msa0738490:intron | 25.0% |
| ! | TCGCAAGAAAAAAACTTATA+GGG | - | chr5_1:56245366-56245385 | None:intergenic | 25.0% |
| ! | TTCGCAAGAAAAAAACTTAT+AGG | - | chr5_1:56245367-56245386 | None:intergenic | 25.0% |
| !!! | CCAACAAACCATTTTTTTAA+CGG | - | chr5_1:56245437-56245456 | None:intergenic | 25.0% |
| !! | CCTGTGTAAAAATACATTTT+TGG | - | chr5_1:56245531-56245550 | None:intergenic | 25.0% |
| !!! | CCAAAAATGTATTTTTACAC+AGG | + | chr5_1:56245528-56245547 | Msa0738490:intron | 25.0% |
| ! | AAGAATGAAAGATAATAGAG+AGG | - | chr5_1:56245618-56245637 | None:intergenic | 25.0% |
| ! | AGAATAGTTATCAGAGTAAT+TGG | - | chr5_1:56245809-56245828 | None:intergenic | 25.0% |
| TAGATGAAGGTTTCTATGAA+CGG | + | chr5_1:56244823-56244842 | Msa0738490:intron | 30.0% | |
| GGAAGAATCAAAGAAATAGA+TGG | + | chr5_1:56244848-56244867 | Msa0738490:intron | 30.0% | |
| !!! | ATTTTTTTAACGGAACCTGA+CGG | - | chr5_1:56245427-56245446 | None:intergenic | 30.0% |
| ! | CCGTTAAAAAAATGGTTTGT+TGG | + | chr5_1:56245434-56245453 | Msa0738490:intron | 30.0% |
| !! | AAAAATGGTTTGTTGGCTAA+CGG | + | chr5_1:56245441-56245460 | Msa0738490:intron | 30.0% |
| AAGACATTGTTGAAGGAAAT+GGG | - | chr5_1:56245692-56245711 | None:intergenic | 30.0% | |
| CCTATATGATGATTGAGAAA+TGG | - | chr5_1:56245721-56245740 | None:intergenic | 30.0% | |
| CCATTTCTCAATCATCATAT+AGG | + | chr5_1:56245718-56245737 | Msa0738490:intron | 30.0% | |
| TAATTGTAATGTGAAGGTGA+AGG | - | chr5_1:56245781-56245800 | None:intergenic | 30.0% | |
| GTGTAGTAATTGTAATGTGA+AGG | - | chr5_1:56245787-56245806 | None:intergenic | 30.0% | |
| TACTCTGATAACTATTCTAG+TGG | + | chr5_1:56245811-56245830 | Msa0738490:CDS | 30.0% | |
| TTCCAGTATGTTCAAAGAAA+GGG | - | chr5_1:56245894-56245913 | None:intergenic | 30.0% | |
| TAGATGAAGGTTTCTATGAA+CGG | + | chr5_1:56244823-56244842 | Msa0738490:intron | 30.0% | |
| GGAAGAATCAAAGAAATAGA+TGG | + | chr5_1:56244848-56244867 | Msa0738490:intron | 30.0% | |
| !!! | ATTTTTTTAACGGAACCTGA+CGG | - | chr5_1:56245427-56245446 | None:intergenic | 30.0% |
| ! | CCGTTAAAAAAATGGTTTGT+TGG | + | chr5_1:56245434-56245453 | Msa0738490:intron | 30.0% |
| !! | AAAAATGGTTTGTTGGCTAA+CGG | + | chr5_1:56245441-56245460 | Msa0738490:intron | 30.0% |
| AAGACATTGTTGAAGGAAAT+GGG | - | chr5_1:56245692-56245711 | None:intergenic | 30.0% | |
| CCTATATGATGATTGAGAAA+TGG | - | chr5_1:56245721-56245740 | None:intergenic | 30.0% | |
| CCATTTCTCAATCATCATAT+AGG | + | chr5_1:56245718-56245737 | Msa0738490:intron | 30.0% | |
| TAATTGTAATGTGAAGGTGA+AGG | - | chr5_1:56245781-56245800 | None:intergenic | 30.0% | |
| GTGTAGTAATTGTAATGTGA+AGG | - | chr5_1:56245787-56245806 | None:intergenic | 30.0% | |
| TACTCTGATAACTATTCTAG+TGG | + | chr5_1:56245811-56245830 | Msa0738490:CDS | 30.0% | |
| TTCCAGTATGTTCAAAGAAA+GGG | - | chr5_1:56245894-56245913 | None:intergenic | 30.0% | |
| TTGTCGAGATGAATAGATGA+AGG | + | chr5_1:56244810-56244829 | Msa0738490:intron | 35.0% | |
| TGGAAAGAAATCGTTTCTTG+TGG | + | chr5_1:56244868-56244887 | Msa0738490:intron | 35.0% | |
| GAAGCTAGAATCGAATGAAT+AGG | + | chr5_1:56245096-56245115 | Msa0738490:intron | 35.0% | |
| ! | ACAAGTTGAATATACCTCTG+TGG | - | chr5_1:56245152-56245171 | None:intergenic | 35.0% |
| !! | TCATATAGCGTTTTTGAGCA+AGG | - | chr5_1:56245221-56245240 | None:intergenic | 35.0% |
| TTCCAAAACGTTTGGTACAA+GGG | - | chr5_1:56245394-56245413 | None:intergenic | 35.0% | |
| GTCAGGTTCCGTTAAAAAAA+TGG | + | chr5_1:56245426-56245445 | Msa0738490:intron | 35.0% | |
| GAGGAAGAAGAAATAAAGAG+TGG | - | chr5_1:56245599-56245618 | None:intergenic | 35.0% | |
| AATTGAAGGTTGAACATGGA+AGG | - | chr5_1:56245654-56245673 | None:intergenic | 35.0% | |
| !! | GTTGAAGGAAATGGGTTTTA+GGG | - | chr5_1:56245684-56245703 | None:intergenic | 35.0% |
| !! | TGTTGAAGGAAATGGGTTTT+AGG | - | chr5_1:56245685-56245704 | None:intergenic | 35.0% |
| GAAGACATTGTTGAAGGAAA+TGG | - | chr5_1:56245693-56245712 | None:intergenic | 35.0% | |
| GAATGAGAAGACATTGTTGA+AGG | - | chr5_1:56245699-56245718 | None:intergenic | 35.0% | |
| CTTCCAGTATGTTCAAAGAA+AGG | - | chr5_1:56245895-56245914 | None:intergenic | 35.0% | |
| TTGTCGAGATGAATAGATGA+AGG | + | chr5_1:56244810-56244829 | Msa0738490:intron | 35.0% | |
| TGGAAAGAAATCGTTTCTTG+TGG | + | chr5_1:56244868-56244887 | Msa0738490:intron | 35.0% | |
| GAAGCTAGAATCGAATGAAT+AGG | + | chr5_1:56245096-56245115 | Msa0738490:intron | 35.0% | |
| ! | ACAAGTTGAATATACCTCTG+TGG | - | chr5_1:56245152-56245171 | None:intergenic | 35.0% |
| !! | TCATATAGCGTTTTTGAGCA+AGG | - | chr5_1:56245221-56245240 | None:intergenic | 35.0% |
| TTCCAAAACGTTTGGTACAA+GGG | - | chr5_1:56245394-56245413 | None:intergenic | 35.0% | |
| GTCAGGTTCCGTTAAAAAAA+TGG | + | chr5_1:56245426-56245445 | Msa0738490:intron | 35.0% | |
| GAGGAAGAAGAAATAAAGAG+TGG | - | chr5_1:56245599-56245618 | None:intergenic | 35.0% | |
| AATTGAAGGTTGAACATGGA+AGG | - | chr5_1:56245654-56245673 | None:intergenic | 35.0% | |
| !! | GTTGAAGGAAATGGGTTTTA+GGG | - | chr5_1:56245684-56245703 | None:intergenic | 35.0% |
| !! | TGTTGAAGGAAATGGGTTTT+AGG | - | chr5_1:56245685-56245704 | None:intergenic | 35.0% |
| GAAGACATTGTTGAAGGAAA+TGG | - | chr5_1:56245693-56245712 | None:intergenic | 35.0% | |
| GAATGAGAAGACATTGTTGA+AGG | - | chr5_1:56245699-56245718 | None:intergenic | 35.0% | |
| CTTCCAGTATGTTCAAAGAA+AGG | - | chr5_1:56245895-56245914 | None:intergenic | 35.0% | |
| GAGAAGGTTGAATCGATGAA+GGG | + | chr5_1:56244777-56244796 | Msa0738490:CDS | 40.0% | |
| AGAAGGTTGAATCGATGAAG+GGG | + | chr5_1:56244778-56244797 | Msa0738490:CDS | 40.0% | |
| TGAATCGATGAAGGGGTTTA+TGG | + | chr5_1:56244785-56244804 | Msa0738490:CDS | 40.0% | |
| GAATCGATGAAGGGGTTTAT+GGG | + | chr5_1:56244786-56244805 | Msa0738490:CDS | 40.0% | |
| AGAAATCGTTTCTTGTGGAG+TGG | + | chr5_1:56244873-56244892 | Msa0738490:intron | 40.0% | |
| ! | AACCCTTGTACCAAACGTTT+TGG | + | chr5_1:56245389-56245408 | Msa0738490:intron | 40.0% |
| GTTCCAAAACGTTTGGTACA+AGG | - | chr5_1:56245395-56245414 | None:intergenic | 40.0% | |
| CTAGTGCCAACTAGATTAAG+TGG | + | chr5_1:56245494-56245513 | Msa0738490:intron | 40.0% | |
| TGCCAACTAGATTAAGTGGA+GGG | + | chr5_1:56245498-56245517 | Msa0738490:intron | 40.0% | |
| AGGCAATTGAAGGTTGAACA+TGG | - | chr5_1:56245658-56245677 | None:intergenic | 40.0% | |
| TTGTAATGTGAAGGTGAAGG+TGG | - | chr5_1:56245778-56245797 | None:intergenic | 40.0% | |
| ! | TCTAGTGGCAGTTACTTTCT+CGG | + | chr5_1:56245826-56245845 | Msa0738490:CDS | 40.0% |
| TACTTTCTCGGTTATCATCC+TGG | + | chr5_1:56245838-56245857 | Msa0738490:CDS | 40.0% | |
| AACGAGGACGAATATTCAAG+CGG | - | chr5_1:56245952-56245971 | None:intergenic | 40.0% | |
| ! | ATTTTACCACCTTTTGGCCT+CGG | - | chr5_1:56245979-56245998 | None:intergenic | 40.0% |
| AGGCCAAAAGGTGGTAAAAT+GGG | + | chr5_1:56245979-56245998 | Msa0738490:CDS | 40.0% | |
| ! | AAGCCCATTTTACCACCTTT+TGG | - | chr5_1:56245985-56246004 | None:intergenic | 40.0% |
| ! | AAAGGTGGTAAAATGGGCTT+AGG | + | chr5_1:56245985-56246004 | Msa0738490:CDS | 40.0% |
| GAGAAGGTTGAATCGATGAA+GGG | + | chr5_1:56244777-56244796 | Msa0738490:CDS | 40.0% | |
| AGAAGGTTGAATCGATGAAG+GGG | + | chr5_1:56244778-56244797 | Msa0738490:CDS | 40.0% | |
| TGAATCGATGAAGGGGTTTA+TGG | + | chr5_1:56244785-56244804 | Msa0738490:CDS | 40.0% | |
| GAATCGATGAAGGGGTTTAT+GGG | + | chr5_1:56244786-56244805 | Msa0738490:CDS | 40.0% | |
| AGAAATCGTTTCTTGTGGAG+TGG | + | chr5_1:56244873-56244892 | Msa0738490:intron | 40.0% | |
| ! | AACCCTTGTACCAAACGTTT+TGG | + | chr5_1:56245389-56245408 | Msa0738490:intron | 40.0% |
| GTTCCAAAACGTTTGGTACA+AGG | - | chr5_1:56245395-56245414 | None:intergenic | 40.0% | |
| CTAGTGCCAACTAGATTAAG+TGG | + | chr5_1:56245494-56245513 | Msa0738490:intron | 40.0% | |
| TGCCAACTAGATTAAGTGGA+GGG | + | chr5_1:56245498-56245517 | Msa0738490:intron | 40.0% | |
| AGGCAATTGAAGGTTGAACA+TGG | - | chr5_1:56245658-56245677 | None:intergenic | 40.0% | |
| TTGTAATGTGAAGGTGAAGG+TGG | - | chr5_1:56245778-56245797 | None:intergenic | 40.0% | |
| ! | TCTAGTGGCAGTTACTTTCT+CGG | + | chr5_1:56245826-56245845 | Msa0738490:CDS | 40.0% |
| TACTTTCTCGGTTATCATCC+TGG | + | chr5_1:56245838-56245857 | Msa0738490:CDS | 40.0% | |
| AACGAGGACGAATATTCAAG+CGG | - | chr5_1:56245952-56245971 | None:intergenic | 40.0% | |
| ! | ATTTTACCACCTTTTGGCCT+CGG | - | chr5_1:56245979-56245998 | None:intergenic | 40.0% |
| AGGCCAAAAGGTGGTAAAAT+GGG | + | chr5_1:56245979-56245998 | Msa0738490:CDS | 40.0% | |
| ! | AAGCCCATTTTACCACCTTT+TGG | - | chr5_1:56245985-56246004 | None:intergenic | 40.0% |
| ! | AAAGGTGGTAAAATGGGCTT+AGG | + | chr5_1:56245985-56246004 | Msa0738490:CDS | 40.0% |
| GGAGAAGGTTGAATCGATGA+AGG | + | chr5_1:56244776-56244795 | Msa0738490:CDS | 45.0% | |
| TGAAGGTTTCTATGAACGGC+AGG | + | chr5_1:56244827-56244846 | Msa0738490:intron | 45.0% | |
| AATAGGTGACCTCTTTGCTC+CGG | + | chr5_1:56245113-56245132 | Msa0738490:intron | 45.0% | |
| AGTAAAAGGTCCCTGTGAGT+TGG | + | chr5_1:56245322-56245341 | Msa0738490:intron | 45.0% | |
| GGGATGAGTTCCAAAACGTT+TGG | - | chr5_1:56245402-56245421 | None:intergenic | 45.0% | |
| ! | TTTTTAACGGAACCTGACGG+CGG | - | chr5_1:56245424-56245443 | None:intergenic | 45.0% |
| CATATCAACATGTGCCACGT+AGG | - | chr5_1:56245470-56245489 | None:intergenic | 45.0% | |
| CTACGTGGCACATGTTGATA+TGG | + | chr5_1:56245468-56245487 | Msa0738490:intron | 45.0% | |
| GTGCCAACTAGATTAAGTGG+AGG | + | chr5_1:56245497-56245516 | Msa0738490:intron | 45.0% | |
| GTCCCTCCACTTAATCTAGT+TGG | - | chr5_1:56245503-56245522 | None:intergenic | 45.0% | |
| TAATGTGAAGGTGAAGGTGG+TGG | - | chr5_1:56245775-56245794 | None:intergenic | 45.0% | |
| TTTCTCGGTTATCATCCTGG+TGG | + | chr5_1:56245841-56245860 | Msa0738490:CDS | 45.0% | |
| GTATGTTCAAAGAAAGGGCG+TGG | - | chr5_1:56245889-56245908 | None:intergenic | 45.0% | |
| CGCCCTTTCTTTGAACATAC+TGG | + | chr5_1:56245889-56245908 | Msa0738490:CDS | 45.0% | |
| GAATATTCAAGCGGCGCATA+CGG | - | chr5_1:56245943-56245962 | None:intergenic | 45.0% | |
| GAGGCCAAAAGGTGGTAAAA+TGG | + | chr5_1:56245978-56245997 | Msa0738490:CDS | 45.0% | |
| ! | GGTAAAATGGGCTTAGGAGA+TGG | + | chr5_1:56245991-56246010 | Msa0738490:CDS | 45.0% |
| !! | TTAGGAGATGGACTAGCTGT+TGG | + | chr5_1:56246003-56246022 | Msa0738490:CDS | 45.0% |
| !! | GTGGACTTGCTATGGAAGAA+GGG | + | chr5_1:56246046-56246065 | Msa0738490:CDS | 45.0% |
| TTGCTATGGAAGAAGGGATG+AGG | + | chr5_1:56246052-56246071 | Msa0738490:CDS | 45.0% | |
| GGAGAAGGTTGAATCGATGA+AGG | + | chr5_1:56244776-56244795 | Msa0738490:CDS | 45.0% | |
| TGAAGGTTTCTATGAACGGC+AGG | + | chr5_1:56244827-56244846 | Msa0738490:intron | 45.0% | |
| AATAGGTGACCTCTTTGCTC+CGG | + | chr5_1:56245113-56245132 | Msa0738490:intron | 45.0% | |
| AGTAAAAGGTCCCTGTGAGT+TGG | + | chr5_1:56245322-56245341 | Msa0738490:intron | 45.0% | |
| GGGATGAGTTCCAAAACGTT+TGG | - | chr5_1:56245402-56245421 | None:intergenic | 45.0% | |
| ! | TTTTTAACGGAACCTGACGG+CGG | - | chr5_1:56245424-56245443 | None:intergenic | 45.0% |
| CATATCAACATGTGCCACGT+AGG | - | chr5_1:56245470-56245489 | None:intergenic | 45.0% | |
| CTACGTGGCACATGTTGATA+TGG | + | chr5_1:56245468-56245487 | Msa0738490:intron | 45.0% | |
| GTGCCAACTAGATTAAGTGG+AGG | + | chr5_1:56245497-56245516 | Msa0738490:intron | 45.0% | |
| GTCCCTCCACTTAATCTAGT+TGG | - | chr5_1:56245503-56245522 | None:intergenic | 45.0% | |
| TAATGTGAAGGTGAAGGTGG+TGG | - | chr5_1:56245775-56245794 | None:intergenic | 45.0% | |
| TTTCTCGGTTATCATCCTGG+TGG | + | chr5_1:56245841-56245860 | Msa0738490:CDS | 45.0% | |
| GTATGTTCAAAGAAAGGGCG+TGG | - | chr5_1:56245889-56245908 | None:intergenic | 45.0% | |
| CGCCCTTTCTTTGAACATAC+TGG | + | chr5_1:56245889-56245908 | Msa0738490:CDS | 45.0% | |
| GAATATTCAAGCGGCGCATA+CGG | - | chr5_1:56245943-56245962 | None:intergenic | 45.0% | |
| GAGGCCAAAAGGTGGTAAAA+TGG | + | chr5_1:56245978-56245997 | Msa0738490:CDS | 45.0% | |
| ! | GGTAAAATGGGCTTAGGAGA+TGG | + | chr5_1:56245991-56246010 | Msa0738490:CDS | 45.0% |
| !! | TTAGGAGATGGACTAGCTGT+TGG | + | chr5_1:56246003-56246022 | Msa0738490:CDS | 45.0% |
| !! | GTGGACTTGCTATGGAAGAA+GGG | + | chr5_1:56246046-56246065 | Msa0738490:CDS | 45.0% |
| TTGCTATGGAAGAAGGGATG+AGG | + | chr5_1:56246052-56246071 | Msa0738490:CDS | 45.0% | |
| !!! | TTTTATTTTTAATTTTTTTC+TGG | - | chr5_1:56245011-56245030 | None:intergenic | 5.0% |
| !!! | TTTTATTTTTAATTTTTTTC+TGG | - | chr5_1:56245011-56245030 | None:intergenic | 5.0% |
| CAAAAACGCGCCAACTCACA+GGG | - | chr5_1:56245335-56245354 | None:intergenic | 50.0% | |
| ! | TTTTAACGGAACCTGACGGC+GGG | - | chr5_1:56245423-56245442 | None:intergenic | 50.0% |
| ! | TTTAGGGCGCAGGCAATTGA+AGG | - | chr5_1:56245668-56245687 | None:intergenic | 50.0% |
| ! | TGTTCAAAGAAAGGGCGTGG+CGG | - | chr5_1:56245886-56245905 | None:intergenic | 50.0% |
| ACTGGAAGTTATGCTGCTGC+TGG | + | chr5_1:56245907-56245926 | Msa0738490:CDS | 50.0% | |
| CTGGAAGTTATGCTGCTGCT+GGG | + | chr5_1:56245908-56245927 | Msa0738490:CDS | 50.0% | |
| ATTCGTCCTCGTTTGATCCG+AGG | + | chr5_1:56245959-56245978 | Msa0738490:CDS | 50.0% | |
| ! | TTTTGGCCTCGGATCAAACG+AGG | - | chr5_1:56245968-56245987 | None:intergenic | 50.0% |
| TCGTTTGATCCGAGGCCAAA+AGG | + | chr5_1:56245967-56245986 | Msa0738490:CDS | 50.0% | |
| TTTGATCCGAGGCCAAAAGG+TGG | + | chr5_1:56245970-56245989 | Msa0738490:CDS | 50.0% | |
| !! | GGTGGACTTGCTATGGAAGA+AGG | + | chr5_1:56246045-56246064 | Msa0738490:CDS | 50.0% |
| CAAAAACGCGCCAACTCACA+GGG | - | chr5_1:56245335-56245354 | None:intergenic | 50.0% | |
| ! | TTTTAACGGAACCTGACGGC+GGG | - | chr5_1:56245423-56245442 | None:intergenic | 50.0% |
| ! | TTTAGGGCGCAGGCAATTGA+AGG | - | chr5_1:56245668-56245687 | None:intergenic | 50.0% |
| ! | TGTTCAAAGAAAGGGCGTGG+CGG | - | chr5_1:56245886-56245905 | None:intergenic | 50.0% |
| ACTGGAAGTTATGCTGCTGC+TGG | + | chr5_1:56245907-56245926 | Msa0738490:CDS | 50.0% | |
| CTGGAAGTTATGCTGCTGCT+GGG | + | chr5_1:56245908-56245927 | Msa0738490:CDS | 50.0% | |
| ATTCGTCCTCGTTTGATCCG+AGG | + | chr5_1:56245959-56245978 | Msa0738490:CDS | 50.0% | |
| ! | TTTTGGCCTCGGATCAAACG+AGG | - | chr5_1:56245968-56245987 | None:intergenic | 50.0% |
| TCGTTTGATCCGAGGCCAAA+AGG | + | chr5_1:56245967-56245986 | Msa0738490:CDS | 50.0% | |
| TTTGATCCGAGGCCAAAAGG+TGG | + | chr5_1:56245970-56245989 | Msa0738490:CDS | 50.0% | |
| !! | GGTGGACTTGCTATGGAAGA+AGG | + | chr5_1:56246045-56246064 | Msa0738490:CDS | 50.0% |
| CTGTGGCAAAGAAAGCCTGC+CGG | - | chr5_1:56245135-56245154 | None:intergenic | 55.0% | |
| GCAGGCTTTCTTTGCCACAG+AGG | + | chr5_1:56245135-56245154 | Msa0738490:intron | 55.0% | |
| CCAAAAACGCGCCAACTCAC+AGG | - | chr5_1:56245336-56245355 | None:intergenic | 55.0% | |
| !! | CCTGTGAGTTGGCGCGTTTT+TGG | + | chr5_1:56245333-56245352 | Msa0738490:intron | 55.0% |
| TTTAACGGAACCTGACGGCG+GGG | - | chr5_1:56245422-56245441 | None:intergenic | 55.0% | |
| !!! | GGAAATGGGTTTTAGGGCGC+AGG | - | chr5_1:56245678-56245697 | None:intergenic | 55.0% |
| !! | GAAGGTGAAGGTGGTGGAGA+AGG | - | chr5_1:56245769-56245788 | None:intergenic | 55.0% |
| !! | TAGCTGTTGGTGCTGCTGCT+GGG | + | chr5_1:56246016-56246035 | Msa0738490:CDS | 55.0% |
| CTGTGGCAAAGAAAGCCTGC+CGG | - | chr5_1:56245135-56245154 | None:intergenic | 55.0% | |
| GCAGGCTTTCTTTGCCACAG+AGG | + | chr5_1:56245135-56245154 | Msa0738490:intron | 55.0% | |
| CCAAAAACGCGCCAACTCAC+AGG | - | chr5_1:56245336-56245355 | None:intergenic | 55.0% | |
| !! | CCTGTGAGTTGGCGCGTTTT+TGG | + | chr5_1:56245333-56245352 | Msa0738490:intron | 55.0% |
| TTTAACGGAACCTGACGGCG+GGG | - | chr5_1:56245422-56245441 | None:intergenic | 55.0% | |
| !!! | GGAAATGGGTTTTAGGGCGC+AGG | - | chr5_1:56245678-56245697 | None:intergenic | 55.0% |
| !! | GAAGGTGAAGGTGGTGGAGA+AGG | - | chr5_1:56245769-56245788 | None:intergenic | 55.0% |
| !! | TAGCTGTTGGTGCTGCTGCT+GGG | + | chr5_1:56246016-56246035 | Msa0738490:CDS | 55.0% |
| GAAAGCCTGCCGGAGCAAAG+AGG | - | chr5_1:56245125-56245144 | None:intergenic | 60.0% | |
| ! | TTGGCTAACGGACGCCTACG+TGG | + | chr5_1:56245453-56245472 | Msa0738490:intron | 60.0% |
| ! | TCAAAGAAAGGGCGTGGCGG+CGG | - | chr5_1:56245883-56245902 | None:intergenic | 60.0% |
| TATGCTGCTGCTGGGCCTAG+TGG | + | chr5_1:56245916-56245935 | Msa0738490:CDS | 60.0% | |
| !! | CTAGCTGTTGGTGCTGCTGC+TGG | + | chr5_1:56246015-56246034 | Msa0738490:CDS | 60.0% |
| !! | AGCTGTTGGTGCTGCTGCTG+GGG | + | chr5_1:56246017-56246036 | Msa0738490:CDS | 60.0% |
| GAAAGCCTGCCGGAGCAAAG+AGG | - | chr5_1:56245125-56245144 | None:intergenic | 60.0% | |
| ! | TTGGCTAACGGACGCCTACG+TGG | + | chr5_1:56245453-56245472 | Msa0738490:intron | 60.0% |
| ! | TCAAAGAAAGGGCGTGGCGG+CGG | - | chr5_1:56245883-56245902 | None:intergenic | 60.0% |
| TATGCTGCTGCTGGGCCTAG+TGG | + | chr5_1:56245916-56245935 | Msa0738490:CDS | 60.0% | |
| !! | CTAGCTGTTGGTGCTGCTGC+TGG | + | chr5_1:56246015-56246034 | Msa0738490:CDS | 60.0% |
| !! | AGCTGTTGGTGCTGCTGCTG+GGG | + | chr5_1:56246017-56246036 | Msa0738490:CDS | 60.0% |
| GGTGACCTCTTTGCTCCGGC+AGG | + | chr5_1:56245117-56245136 | Msa0738490:intron | 65.0% | |
| TGGAACTCATCCCCGCCGTC+AGG | + | chr5_1:56245409-56245428 | Msa0738490:intron | 65.0% | |
| !! | GGTGGTGGGTAAGCACCACC+AGG | - | chr5_1:56245859-56245878 | None:intergenic | 65.0% |
| AGCGGCGCATACGGTCCACT+AGG | - | chr5_1:56245934-56245953 | None:intergenic | 65.0% | |
| !! | GGCGCTGGGTGGACTTGCTA+TGG | + | chr5_1:56246038-56246057 | Msa0738490:CDS | 65.0% |
| GGTGACCTCTTTGCTCCGGC+AGG | + | chr5_1:56245117-56245136 | Msa0738490:intron | 65.0% | |
| TGGAACTCATCCCCGCCGTC+AGG | + | chr5_1:56245409-56245428 | Msa0738490:intron | 65.0% | |
| !! | GGTGGTGGGTAAGCACCACC+AGG | - | chr5_1:56245859-56245878 | None:intergenic | 65.0% |
| AGCGGCGCATACGGTCCACT+AGG | - | chr5_1:56245934-56245953 | None:intergenic | 65.0% | |
| !! | GGCGCTGGGTGGACTTGCTA+TGG | + | chr5_1:56246038-56246057 | Msa0738490:CDS | 65.0% |
| ! | AAGAAAGGGCGTGGCGGCGG+CGG | - | chr5_1:56245880-56245899 | None:intergenic | 70.0% |
| ! | AAGAAAGGGCGTGGCGGCGG+CGG | - | chr5_1:56245880-56245899 | None:intergenic | 70.0% |
| !! | TGGTGCTGCTGCTGGGGCGC+TGG | + | chr5_1:56246023-56246042 | Msa0738490:CDS | 75.0% |
| !! | GGTGCTGCTGCTGGGGCGCT+GGG | + | chr5_1:56246024-56246043 | Msa0738490:CDS | 75.0% |
| !! | TGGTGCTGCTGCTGGGGCGC+TGG | + | chr5_1:56246023-56246042 | Msa0738490:CDS | 75.0% |
| !! | GGTGCTGCTGCTGGGGCGCT+GGG | + | chr5_1:56246024-56246043 | Msa0738490:CDS | 75.0% |
| !! | AAAGGGCGTGGCGGCGGCGG+TGG | - | chr5_1:56245877-56245896 | None:intergenic | 80.0% |
| !!! | GCTGCTGCTGGGGCGCTGGG+TGG | + | chr5_1:56246027-56246046 | Msa0738490:CDS | 80.0% |
| !! | AAAGGGCGTGGCGGCGGCGG+TGG | - | chr5_1:56245877-56245896 | None:intergenic | 80.0% |
| !!! | GCTGCTGCTGGGGCGCTGGG+TGG | + | chr5_1:56246027-56246046 | Msa0738490:CDS | 80.0% |
| ! | GGCGTGGCGGCGGCGGTGGT+GGG | - | chr5_1:56245873-56245892 | None:intergenic | 85.0% |
| ! | GGCGTGGCGGCGGCGGTGGT+GGG | - | chr5_1:56245873-56245892 | None:intergenic | 85.0% |
| ! | GGGCGTGGCGGCGGCGGTGG+TGG | - | chr5_1:56245874-56245893 | None:intergenic | 90.0% |
| ! | GGGCGTGGCGGCGGCGGTGG+TGG | - | chr5_1:56245874-56245893 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 56244774 | 56246080 | 56244774 | ID=Msa0738490;Name=Msa0738490 |
| chr5_1 | mRNA | 56244774 | 56246080 | 56244774 | ID=Msa0738490-mRNA-1;Parent=Msa0738490;Name=Msa0738490-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.5|1|1|2|0|124 |
| chr5_1 | exon | 56244774 | 56244807 | 56244774 | ID=Msa0738490-mRNA-1:exon:15955;Parent=Msa0738490-mRNA-1 |
| chr5_1 | exon | 56245740 | 56246080 | 56245740 | ID=Msa0738490-mRNA-1:exon:15956;Parent=Msa0738490-mRNA-1 |
| chr5_1 | CDS | 56244774 | 56244807 | 56244774 | ID=Msa0738490-mRNA-1:cds;Parent=Msa0738490-mRNA-1 |
| chr5_1 | CDS | 56245740 | 56246080 | 56245740 | ID=Msa0738490-mRNA-1:cds;Parent=Msa0738490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
