AlfalfaGEDB | Msa0491590

M. sativa cultivar zhongmu-4 / Msa0491590

KEGG: K15255
GO: -
PFAM: PF14214.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491590	XP_024635968.1	67.209	1476	404	6	126	1539	210	1667	0.0	2096

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491590	sp\|Q9H611\|PIF1_HUMAN	25.586	469	251	19	1064	1515	207	594	5.07e-24	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491590	A0A6P5MMU4	51.102	1407	623	7	195	1539	202	1605	0.0	1495

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012700	Msa0491590	0.830223	3.313593e-55	-8.615850e-47
Msa0013750	Msa0491590	0.822042	2.926573e-53	-8.615850e-47
Msa0015750	Msa0491590	0.841099	5.836461e-58	-8.615850e-47
Msa0016570	Msa0491590	0.844914	5.626386e-59	-8.615850e-47
Msa0016580	Msa0491590	0.850022	2.220787e-60	-8.615850e-47
Msa0056530	Msa0491590	0.814155	1.779059e-51	-8.615850e-47
Msa0071500	Msa0491590	0.812218	4.735588e-51	-8.615850e-47
Msa0102070	Msa0491590	0.865460	5.809801e-65	-8.615850e-47
Msa0110270	Msa0491590	0.832653	8.359334e-56	-8.615850e-47
Msa0111510	Msa0491590	0.814787	1.289448e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491590	MtrunA17_Chr7g0269651	55.501	809	281	8	157	886	178	986	0.0	931
Msa0491590	MtrunA17_Chr1g0206501	67.871	498	154	1	835	1326	1	498	0.0	735
Msa0491590	MtrunA17_Chr1g0206491	75.000	428	107	0	206	633	150	577	0.0	701
Msa0491590	MtrunA17_Chr1g0173671	55.918	490	207	2	146	635	173	653	0.0	602
Msa0491590	MtrunA17_Chr3g0101861	54.194	465	212	1	1076	1539	1	465	1.65e-174	531
Msa0491590	MtrunA17_Chr1g0173691	66.038	371	120	1	1175	1539	1	371	2.71e-171	518
Msa0491590	MtrunA17_Chr1g0173681	65.976	338	111	2	696	1030	2	338	1.91e-155	475
Msa0491590	MtrunA17_Chr7g0269671	68.072	332	99	2	1175	1499	1	332	5.81e-152	466
Msa0491590	MtrunA17_Chr3g0101871	51.079	417	197	2	639	1049	685	1100	5.17e-140	461
Msa0491590	MtrunA17_Chr3g0101871	47.465	434	223	3	203	635	183	612	5.44e-120	405

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491590	AT3G51690.1	41.367	278	156	3	1264	1539	59	331	1.28e-66	229
Msa0491590	AT3G51700.1	42.545	275	154	3	1264	1536	60	332	1.56e-63	221
Msa0491590	AT5G28780.1	41.699	259	149	1	1281	1539	74	330	9.23e-60	209

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Find 335 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTACTACAGTCCCAC+GGG	0.617288	3_4:+14343615	Msa0491590:CDS
AAAATTCTGCTCACCAAGTC+TGG	0.364829	3_4:-14341892	None:intergenic
AAACAATGTCTGTGCATCAT+TGG	0.464739	3_4:-14344109	None:intergenic
AAACCATCTCCGGCCATTTG+TGG	0.464374	3_4:-14341831	None:intergenic
AAACTCAATCGTTCTACAGA+AGG	0.595669	3_4:-14342692	None:intergenic
AAAGAGGTGTATCAGTTGGA+AGG	0.598040	3_4:+14342918	Msa0491590:CDS
AAAGCGGACATTCCATTCGG+AGG	0.677594	3_4:+14344166	Msa0491590:CDS
AAAGGGAAAAGATGCAGGAG+AGG	0.541310	3_4:+14339757	Msa0491590:CDS
AAAGGGTTGTGTTACCCGCA+AGG	0.597077	3_4:+14341707	Msa0491590:CDS
AAATATGTTCTTTCTTCACC+GGG	0.583814	3_4:-14344628	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTGGGCATATGTATGTAT+CGG	-	chr3_4:14339800-14339819	None:intergenic	30.0%
CAATACACTTACGATAATGA+AGG	+	chr3_4:14339844-14339863	Msa0491590:CDS	30.0%
AAATAGGACATTAAAGGTCT+TGG	-	chr3_4:14339926-14339945	None:intergenic	30.0%
CAATTAAACCAATCATGAGT+GGG	-	chr3_4:14340051-14340070	None:intergenic	30.0%
GTTCCTAATAATGATTATGG+TGG	+	chr3_4:14340096-14340115	Msa0491590:intron	30.0%
AACCCACCATAATCATTATT+AGG	-	chr3_4:14340102-14340121	None:intergenic	30.0%
TGGAAATTTACCAACTGTAT+CGG	-	chr3_4:14340287-14340306	None:intergenic	30.0%
ATCGATAAGACCAAAAACAA+CGG	+	chr3_4:14340683-14340702	Msa0491590:CDS	30.0%
TCCATTCATTGTAAATACTG+GGG	-	chr3_4:14340717-14340736	None:intergenic	30.0%
CTCCATTCATTGTAAATACT+GGG	-	chr3_4:14340718-14340737	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	14339243	14345209	14339243	ID=Msa0491590;Name=Msa0491590
chr3_4	mRNA	14339243	14345209	14339243	ID=Msa0491590-mRNA-1;Parent=Msa0491590;Name=Msa0491590-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0\|0\|0\|0.44\|1\|1\|9\|0\|1539
chr3_4	exon	14339243	14339354	14339243	ID=Msa0491590-mRNA-1:exon:4232;Parent=Msa0491590-mRNA-1
chr3_4	exon	14339495	14339626	14339495	ID=Msa0491590-mRNA-1:exon:4233;Parent=Msa0491590-mRNA-1
chr3_4	exon	14339719	14339865	14339719	ID=Msa0491590-mRNA-1:exon:4234;Parent=Msa0491590-mRNA-1
chr3_4	exon	14339983	14340114	14339983	ID=Msa0491590-mRNA-1:exon:4235;Parent=Msa0491590-mRNA-1
chr3_4	exon	14340206	14340295	14340206	ID=Msa0491590-mRNA-1:exon:4236;Parent=Msa0491590-mRNA-1
chr3_4	exon	14340414	14340852	14340414	ID=Msa0491590-mRNA-1:exon:4237;Parent=Msa0491590-mRNA-1
chr3_4	exon	14341057	14341900	14341057	ID=Msa0491590-mRNA-1:exon:4238;Parent=Msa0491590-mRNA-1
chr3_4	exon	14342209	14343286	14342209	ID=Msa0491590-mRNA-1:exon:4239;Parent=Msa0491590-mRNA-1
chr3_4	exon	14343564	14345209	14343564	ID=Msa0491590-mRNA-1:exon:4240;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14339243	14339354	14339243	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14339495	14339626	14339495	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14339719	14339865	14339719	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14339983	14340114	14339983	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14340206	14340295	14340206	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14340414	14340852	14340414	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14341057	14341900	14341057	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14342209	14343286	14342209	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1
chr3_4	CDS	14343564	14345209	14343564	ID=Msa0491590-mRNA-1:cds;Parent=Msa0491590-mRNA-1

Gene Sequence

>Msa0491590

ATGGAATCTGGTAAAAGGCGCAAAACCAACGACAATGGTCATAGAATTCAAAACATATGCCCAGAAGACATCCCGCCGGCAGTTTCCAATCAATACACTTACGATAATGGAGGAGATGACGTTGATATCAACGATAGTGAAACACTATCGGATGAATTGGATGTGGATGAGATTGAACCCCCTCATGATTGGTTTAATTGCGCACAAAATAGCGAGCACTATGATGTTCCTGATAATGATTATGAAGACATGGAGGTGATGGAAAATAGCATGCAATCTAAAAAAGGGAAAAGATGCAGGAGAGGAAAATTATTGGTTGAATCCGATACATACATATGCCCAATAGACGTCCCGCCGGCAATTTCCAATCAATACACTTACGATAATGAAGGAGATGACGTTGATATCAGCAATAGCGAAACACTATCGGATGAATCAGATGTGGATGAGATTGAACCCACTCATGATTGGTTTAATTGCGCGCAAAATAGCGAGCAGTATGATGTTCCTAATAATGATTATGAAAACATGGAAGTGATGGAAAACAACATGCAATCTAAAAAAAGGACAAGACGCAGGAGAACAAAATTATTGGTTGAATCCGATACAGTTGAATATTTTGATGTTGGGGAACCGCGGTATGTTTGTAAGGATTGCAACGCATTAATGTGGTATGAAGAGAGAGCAAATAAAAGCATGCGCACGTCAACACCAGAATTTTCTATGTGCTGCATGCAAGGAAGGATAGAGATTGCACCGTTCGCCAGCCTACCTCAATCCCTGCATGAGTTGTATTTTAAAGATGATAGAAAGAGCAAATACTTTTTGGATAACATTAGATCATTTAACAGCATGTTCGCCTTCACTTCAATTGGTGCAAAGATCGATAAGACCAAAAACAACGGCAAGGCGCCCCCAGTATTTACAATGAATGGAGAAAATTACCACCAAATCGGTAGTTTGTTGCCTAAACCAGGGGATCAACCTAAGTTTGCACAATTGTATATATATGATACTGATAACGAAACTCGCAATCGGATGGCATCCGTGAGAATGGACGACGATAGAAATTCTTTGAGGTCAAGTATTGTTGACGAGTTAAGGCATATGCTTGATGCCGCAAATTCATTTGTTAAGTCGTATAGGTTGGTGCGAGATAAATTATTACAATCAGAAACTCCAACTGTAAAGCTACGCTTATTAGGCAAAAGGGGATACAATGGTCGGCGTTATAATGCACCAACTGCATCAGAGGTAGCAGCCTTGGTTGTAGGTGATTATGATGCAGCGGATTTCGAGAGGGACATCGTTGTTGAGTGTGTATCAGGTCTGCTCAAACGTATATCCGTTTTTGAGACATCATACTTACCGCTACAATATCCATTAATATTCTCTCGCGGTGAAGACGGTTTTCGACGAGATATTCAATTTTCGGAAAAAGAAACAAAGAATCCCATCAAAAGAATTTTTGTATCAATGAAAGAGTGGTTTGCATACAAATTGCAGCAGAGGGTCAATGATCAAGGAGCATTATTGTATTCGAGAAAGTTGTTACAACAATTTTGTTGCGATGGATTTAGCATGATCGAGTCTTGGCGGTTAAAATGGTACCGTGATCACCAAAAAGATGTTAGAGCTGATATGTACAAGGGATTATATGAAGCACTGCTTAGAGGCGAGGACAATCCAAGTTCGGTGGGGAAAAGGGTTGTGTTACCCGCAAGGTTTGTCGGCGGTGCACGTTACATGATTCAAAATTATCAAGATGCAATGGCGATATGTTCTTGGGTTGGTTATCCTGATCTTTTTATTACATTTACATGCAACCACAAATGGCCGGAGATGGTTTCATACTTAAAGAAACACAATTTGAAGCCAGCAGACAGGCCAGACTTGACAAAGAAAAAAAATCCCGAGCTCTACAATATTGTCTCATCCCTTATGATACATGGACCATGTGGTGATGAAAATATTAATTCACCATGTACGATAAATGGGAAGTGTACAAAGTATTTTCCGAAAAGATATGTCGACAACACCGTTATTGATGCTGACGGTTACCCTGTTTACAGAAGAAGGGACAATGGCGTAACTGTTCAAAAAGGTGATTCATTTGCCGATAATAGGTATGTTGTCCCATACAACCCACAATTGATGCTGAAGTTTAATGCACATATTAATGTTGAATGGTGCAATCAATCACGTTCTATCAAATATTTGTTCAAGTACGTTAACAAGGGCCACGACCGAGTCACTGCTTCCTTCTATGGGTCTGGTTCCGACTCTTGTGATGAAATTAAAATGTATTATGATTGTCGCTATTTGTCTGCATGTGAAGCTGTGTGGAGAATTTTTTCTTTCGATATTAATTATAGATATCCTTCTGTAGAACGATTGAGTTTTCATTTAGAAGGGGAAGAGCCTATTATATTTGAAGATGATGATGACTTAGAGGATGTTTTAAATAAACCACATATTCGTGACACAAAATTTTTGGCATGGATGGAGGCAAACAAGATATATGCCGATGCAAAAGATCTTACTTATGGGGAATTCCCATTGAAATTTACATGGAAAGCGTCCCAACACAAATGGTCACCAAGACAAAGAGGTGTATCAGTTGGAAGGATTCACTTTGTGCCACCTGGGTCTGGGGAGAAATTTTACTTGCGCACCTTATTGAATTATGTAAAGGGCCCTACTTCTTATGATGAAATTAAAACAGTGAAAGACATCAAATACGACTCCTTTAAGGAGGCTTGCTTCGCATTGGGTTTGTTGGAAGATGACAAAGAGTTTATTGATGCCATTAACCAAGCATCATTTTGGGGAACCGCTGATTTTATGAGAAGATTATTTGTTACGTTGCTGCTTACAAATCAATTTGCGCGGCCAGAGGTAGTGTGGTCTAAAACACGGGAGAATCTAAGTGATGATATAGTGTATCGCCAAAGACGCATCTTGCGTGTTCCAGATCTTCAGCTAGACGAAGAACAAATAAAAAGCTATGCCCTTGCAGAAATTGAAAAGCTACTACAGTCCCACGGGAAAAATTTCAAGGACCACTATCCGTCTATGCCAAGAACTGATGTCGCTATAAATAGTGCTGGGCTTAATAGATTGATTTATGATGAATTGAGATACAATAAAGATTCATTGAAAGAGGAGCATGATCAGTTGATGTCAACGATGACTACTGAACAAAAAAATATTTACGACACTATAATGGGCAGAGTTGAGGCAAATAAACAAGGTTTATTTTTTATATATGGGTACGGTGGTACAGGAAAAACTTTTATTTGGAGAGAAATGTCATCTGCATTGAGATCCAAAGGAGAAATTGTCCTAACAGTGGCGTCAAGTGGTATAGCAGCACTTCTTATTCCAGGTGGGAGAACTGCTCATTCCAGGTTCCATATACCATTCATTGTTCACGAAAGTTCAACTTGCACCATTGAACCATTAAGTCCATTGGGGCAATTGATATTGCGCGCAAAACTAATAATATGGGATGAAGCGCCAATGATGCACAGACATTGTTTTGAGGCTGTTGATCGTAGTTTCCGGGATGTATGCAAAGCGGACATTCCATTCGGAGGCAAGGTTGTCGTTCTAGGTGGTGACTTTCGGCAAATTCTACCAGTGGTTCCTAAAGGAACCAGACAAGACATAATAAACGCAAGCATCAATTCATCACGTCTCTGGCGTCATTGTGAGATTTTGACACTAACTACCAATATGAGACTTTTGCACGGTTGTTCAGATGCTGATGTAGATGAATTAAAAGAATTTGCAGAATGGGTATTGGGCATTGGTGATGGTGTTGTTGGAGACGCATGTGATGATGGAATTAATGTGCATATCCCCGACGACCTACTTATCCATAGTTCAGGTGATCATGTTGCATCTATTGTCGAATGCATTTACCCATCTATTTTGCATAATATGAATGATCCAGAGTATTTTAAAAATAGAGCTATTTTAACGCCAAAAAATCTGATTGTCGAAGAAATTAACAATTATGTTATGTCTTTGATACCCGGTGAAGAAAGAACATATTTGAGTTGTGATTCACCTTGCCCCAGTAGTACTGTTGCTAACAGGCCTGATGATGTTCACACACCAGAATTTTTGAACAAAATTAATGCATCAGGTCTTCCTAACCACAAGATCACATTAAAGGTAGGAGTTCCAGTTATGTTGCTGAGGAATTTGGACATAAATGCTGGCTTGTGCAATGGAACACGATTAATCATTACAAGAATGGGAAGATATGTATTGGAAGGAAGGGTGATTTCAGGAAGCAACATTGGGGACAAGGTGTTTGTGCCTAGACTATCATTGCAACCTTCAGACAGTAGAATTCCGTTCAAGTTCCAACGTAGGCAATTTCCCATTACTGTTTGTTTCGCAATGACCATTAACAAAAGTCAAGGTCAATCATTAAAACAAGTTGGCGTATACCTACCGCAATCTGTGTTCTCTCACGGCCAATTATATGTAGCAGTCTCCAGGGTGACATCAAGGAAAGGTTTGAAAATACTCATAACTGACGAAAATGGAGATTGCATTGATAACACAACAAATGTCGTATACAAGGAGGTGTTTCATAATGTATAG

Protein sequence

>Msa0491590

MESGKRRKTNDNGHRIQNICPEDIPPAVSNQYTYDNGGDDVDINDSETLSDELDVDEIEPPHDWFNCAQNSEHYDVPDNDYEDMEVMENSMQSKKGKRCRRGKLLVESDTYICPIDVPPAISNQYTYDNEGDDVDISNSETLSDESDVDEIEPTHDWFNCAQNSEQYDVPNNDYENMEVMENNMQSKKRTRRRRTKLLVESDTVEYFDVGEPRYVCKDCNALMWYEERANKSMRTSTPEFSMCCMQGRIEIAPFASLPQSLHELYFKDDRKSKYFLDNIRSFNSMFAFTSIGAKIDKTKNNGKAPPVFTMNGENYHQIGSLLPKPGDQPKFAQLYIYDTDNETRNRMASVRMDDDRNSLRSSIVDELRHMLDAANSFVKSYRLVRDKLLQSETPTVKLRLLGKRGYNGRRYNAPTASEVAALVVGDYDAADFERDIVVECVSGLLKRISVFETSYLPLQYPLIFSRGEDGFRRDIQFSEKETKNPIKRIFVSMKEWFAYKLQQRVNDQGALLYSRKLLQQFCCDGFSMIESWRLKWYRDHQKDVRADMYKGLYEALLRGEDNPSSVGKRVVLPARFVGGARYMIQNYQDAMAICSWVGYPDLFITFTCNHKWPEMVSYLKKHNLKPADRPDLTKKKNPELYNIVSSLMIHGPCGDENINSPCTINGKCTKYFPKRYVDNTVIDADGYPVYRRRDNGVTVQKGDSFADNRYVVPYNPQLMLKFNAHINVEWCNQSRSIKYLFKYVNKGHDRVTASFYGSGSDSCDEIKMYYDCRYLSACEAVWRIFSFDINYRYPSVERLSFHLEGEEPIIFEDDDDLEDVLNKPHIRDTKFLAWMEANKIYADAKDLTYGEFPLKFTWKASQHKWSPRQRGVSVGRIHFVPPGSGEKFYLRTLLNYVKGPTSYDEIKTVKDIKYDSFKEACFALGLLEDDKEFIDAINQASFWGTADFMRRLFVTLLLTNQFARPEVVWSKTRENLSDDIVYRQRRILRVPDLQLDEEQIKSYALAEIEKLLQSHGKNFKDHYPSMPRTDVAINSAGLNRLIYDELRYNKDSLKEEHDQLMSTMTTEQKNIYDTIMGRVEANKQGLFFIYGYGGTGKTFIWREMSSALRSKGEIVLTVASSGIAALLIPGGRTAHSRFHIPFIVHESSTCTIEPLSPLGQLILRAKLIIWDEAPMMHRHCFEAVDRSFRDVCKADIPFGGKVVVLGGDFRQILPVVPKGTRQDIINASINSSRLWRHCEILTLTTNMRLLHGCSDADVDELKEFAEWVLGIGDGVVGDACDDGINVHIPDDLLIHSSGDHVASIVECIYPSILHNMNDPEYFKNRAILTPKNLIVEEINNYVMSLIPGEERTYLSCDSPCPSSTVANRPDDVHTPEFLNKINASGLPNHKITLKVGVPVMLLRNLDINAGLCNGTRLIITRMGRYVLEGRVISGSNIGDKVFVPRLSLQPSDSRIPFKFQRRQFPITVCFAMTINKSQGQSLKQVGVYLPQSVFSHGQLYVAVSRVTSRKGLKILITDENGDCIDNTTNVVYKEVFHNV*