AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0746160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746160 MtrunA17_Chr4g0057511 85.377 212 20 3 3 204 37 247 6.45e-117 345
Msa0746160 MtrunA17_Chr4g0057491 78.404 213 35 4 3 204 41 253 1.44e-104 314
Msa0746160 MtrunA17_Chr4g0057461 76.279 215 38 4 3 205 41 254 3.75e-104 313
Msa0746160 MtrunA17_Chr5g0423261 77.465 213 37 4 3 204 41 253 9.04e-103 309
Msa0746160 MtrunA17_Chr4g0057471 75.943 212 41 3 3 204 129 340 1.46e-101 308
Msa0746160 MtrunA17_Chr4g0057481 76.056 213 38 4 3 204 111 321 4.92e-98 299
Msa0746160 MtrunA17_Chr4g0057531 68.664 217 51 5 3 204 194 408 2.91e-89 278
Msa0746160 MtrunA17_Chr7g0261691 54.167 216 82 6 3 203 52 265 5.99e-64 201
Msa0746160 MtrunA17_Chr4g0076611 55.300 217 81 5 3 204 116 331 1.26e-63 209
Msa0746160 MtrunA17_Chr3g0120521 56.682 217 75 6 3 204 192 404 1.02e-62 207
Msa0746160 MtrunA17_Chr7g0250371 49.083 218 90 7 3 203 194 407 2.07e-56 191
Msa0746160 MtrunA17_Chr7g0250331 49.550 222 87 7 3 203 194 411 2.17e-56 191
Msa0746160 MtrunA17_Chr7g0250461 49.083 218 90 7 3 203 194 407 1.49e-55 183
Msa0746160 MtrunA17_Chr7g0250391 48.624 218 91 7 3 203 193 406 2.03e-55 188
Msa0746160 MtrunA17_Chr7g0250411 49.541 218 89 7 3 203 194 407 1.38e-54 186
Msa0746160 MtrunA17_Chr7g0250481 47.748 222 87 8 3 203 193 406 2.49e-54 185
Msa0746160 MtrunA17_Chr5g0439271 47.945 219 94 6 3 203 8 224 2.58e-53 180
Msa0746160 MtrunA17_Chr8g0376841 46.667 210 95 5 4 203 196 398 1.59e-46 161
Msa0746160 MtrunA17_Chr2g0300751 51.381 181 78 4 3 174 195 374 2.10e-46 163
Msa0746160 MtrunA17_Chr8g0369891 48.936 188 83 5 3 179 188 373 3.36e-46 162
Msa0746160 MtrunA17_Chr7g0246451 47.619 210 93 6 4 203 186 388 4.54e-46 162
Msa0746160 MtrunA17_Chr4g0070391 50.543 184 79 4 3 174 171 354 1.41e-45 160
Msa0746160 MtrunA17_Chr4g0026641 48.947 190 83 6 3 179 178 366 3.19e-45 159
Msa0746160 MtrunA17_Chr5g0407701 48.404 188 84 5 3 179 183 368 3.97e-45 159
Msa0746160 MtrunA17_Chr7g0262161 50.000 182 78 5 3 174 179 357 8.71e-45 158
Msa0746160 MtrunA17_Chr8g0344331 42.411 224 113 6 4 212 193 415 1.21e-44 158
Msa0746160 MtrunA17_Chr8g0351011 46.667 210 95 5 4 203 192 394 1.60e-44 157
Msa0746160 MtrunA17_Chr1g0152771 45.274 201 99 4 3 193 174 373 2.25e-44 157
Msa0746160 MtrunA17_Chr3g0143241 43.842 203 97 3 3 194 186 382 5.54e-44 154
Msa0746160 MtrunA17_Chr6g0480721 43.284 201 97 5 4 192 111 306 1.77e-43 154
Msa0746160 MtrunA17_Chr3g0143251 44.335 203 95 4 3 194 186 381 2.10e-43 154
Msa0746160 MtrunA17_Chr4g0026651 49.171 181 78 6 3 170 125 304 2.17e-43 147
Msa0746160 MtrunA17_Chr3g0136151 45.588 204 92 5 3 194 182 378 1.69e-42 152
Msa0746160 MtrunA17_Chr5g0401511 41.667 204 108 4 3 196 181 383 2.91e-42 151
Msa0746160 MtrunA17_Chr8g0377961 47.449 196 75 5 3 174 195 386 3.04e-42 151
Msa0746160 MtrunA17_Chr3g0105461 48.619 181 71 4 4 170 150 322 3.19e-42 145
Msa0746160 MtrunA17_Chr4g0037221 44.118 204 95 5 3 187 175 378 1.20e-41 149
Msa0746160 MtrunA17_Chr8g0344971 44.949 198 99 4 3 190 179 376 6.42e-41 147
Msa0746160 MtrunA17_Chr1g0204321 42.857 196 101 4 3 187 196 391 9.34e-41 147
Msa0746160 MtrunA17_Chr7g0266051 43.000 200 92 6 4 191 144 333 9.95e-41 147
Msa0746160 MtrunA17_Chr1g0189561 49.171 181 78 6 4 174 189 365 2.29e-40 146
Msa0746160 MtrunA17_Chr4g0020651 45.902 183 90 3 3 176 177 359 5.04e-40 145
Msa0746160 MtrunA17_Chr7g0248871 47.514 181 81 6 4 174 192 368 6.99e-40 144
Msa0746160 MtrunA17_Chr2g0285111 38.498 213 110 5 3 195 197 408 8.92e-39 141
Msa0746160 MtrunA17_Chr4g0053781 43.216 199 104 3 3 192 176 374 1.16e-38 141
Msa0746160 MtrunA17_Chr7g0248861 47.514 181 81 6 4 174 195 371 4.34e-38 139
Msa0746160 MtrunA17_Chr7g0248861 47.458 177 82 5 4 171 685 859 9.75e-33 124
Msa0746160 MtrunA17_Chr8g0345991 46.739 184 84 5 3 174 182 363 1.44e-37 138
Msa0746160 MtrunA17_Chr2g0285121 37.736 212 111 5 3 194 193 403 2.06e-37 137
Msa0746160 MtrunA17_Chr8g0334491 42.623 183 81 4 4 175 184 353 3.39e-37 137
Msa0746160 MtrunA17_Chr7g0227991 41.935 186 84 4 3 177 182 354 3.69e-37 137
Msa0746160 MtrunA17_Chr8g0345981 45.109 184 87 4 3 173 184 366 7.08e-37 136
Msa0746160 MtrunA17_Chr2g0301911 40.323 186 87 4 3 177 51 223 4.25e-36 130
Msa0746160 MtrunA17_Chr7g0276151 44.505 182 88 5 3 174 189 367 5.22e-36 133
Msa0746160 MtrunA17_Chr8g0345961 44.624 186 88 4 2 173 179 363 1.52e-35 132
Msa0746160 MtrunA17_Chr8g0345971 45.055 182 87 5 2 173 189 367 1.97e-35 132
Msa0746160 MtrunA17_Chr1g0170081 40.761 184 87 3 3 177 180 350 2.25e-35 132
Msa0746160 MtrunA17_Chr1g0189251 43.523 193 91 6 3 180 189 378 2.41e-35 131
Msa0746160 MtrunA17_Chr3g0079971 42.162 185 83 4 4 177 180 351 3.23e-35 131
Msa0746160 MtrunA17_Chr8g0334521 41.304 184 83 4 3 175 183 352 5.52e-35 130
Msa0746160 MtrunA17_Chr8g0346361 43.636 165 81 4 29 181 37 201 1.26e-34 128
Msa0746160 MtrunA17_Chr3g0103071 50.758 132 58 3 83 210 1 129 3.43e-34 123
Msa0746160 MtrunA17_Chr4g0057061 41.414 198 97 6 4 190 212 401 7.12e-34 127
Msa0746160 MtrunA17_Chr8g0354741 40.376 213 104 4 3 203 64 265 1.06e-33 126
Msa0746160 MtrunA17_Chr8g0354771 38.498 213 119 3 3 203 180 392 1.50e-33 126
Msa0746160 MtrunA17_Chr1g0146251 41.304 184 84 4 3 175 180 350 3.66e-33 125
Msa0746160 MtrunA17_Chr3g0097061 41.622 185 82 4 4 175 83 254 7.93e-33 122
Msa0746160 MtrunA17_Chr4g0035881 48.592 142 61 3 41 170 4 145 1.10e-32 120
Msa0746160 MtrunA17_Chr6g0470851 40.437 183 85 4 4 175 181 350 2.04e-32 123
Msa0746160 MtrunA17_Chr5g0436021 40.000 170 76 4 4 159 31 188 3.35e-32 115
Msa0746160 MtrunA17_Chr1g0146271 39.674 184 87 4 3 175 180 350 3.48e-32 122
Msa0746160 MtrunA17_Chr6g0470881 41.081 185 85 4 4 177 181 352 6.50e-32 122
Msa0746160 MtrunA17_Chr5g0398331 41.463 205 96 5 2 195 188 379 1.14e-30 118
Msa0746160 MtrunA17_Chr2g0312841 37.427 171 83 3 4 163 31 188 1.75e-30 110
Msa0746160 MtrunA17_Chr3g0134621 39.196 199 91 4 3 196 180 353 5.09e-29 113
Msa0746160 MtrunA17_Chr2g0303881 44.262 183 90 5 3 174 158 339 1.17e-28 112
Msa0746160 MtrunA17_Chr5g0447171 64.444 90 32 0 114 203 15 104 2.32e-28 111
Msa0746160 MtrunA17_Chr3g0142981 39.884 173 65 5 7 170 32 174 3.34e-28 105
Msa0746160 MtrunA17_Chr5g0398241 39.512 205 101 6 2 195 189 381 3.87e-28 111
Msa0746160 MtrunA17_Chr5g0398401 39.512 205 101 6 2 195 189 381 1.04e-27 110
Msa0746160 MtrunA17_Chr7g0246461 36.150 213 98 8 3 206 192 375 2.07e-27 108
Msa0746160 MtrunA17_Chr5g0398351 38.916 203 101 5 4 195 942 1132 1.51e-25 103
Msa0746160 MtrunA17_Chr5g0398351 39.487 195 95 5 4 187 172 354 1.11e-24 101
Msa0746160 MtrunA17_Chr2g0298601 33.649 211 117 6 4 196 206 411 6.08e-25 102
Msa0746160 MtrunA17_Chr4g0071871 33.649 211 117 6 4 196 206 411 6.32e-25 102
Msa0746160 MtrunA17_Chr4g0075331 35.676 185 105 4 4 175 129 312 2.23e-24 100
Msa0746160 MtrunA17_Chr2g0301011 36.667 150 71 3 3 141 82 218 3.80e-21 90.9
Msa0746160 MtrunA17_Chr5g0398311 41.500 200 94 5 3 193 189 374 5.16e-20 87.8
Msa0746160 MtrunA17_Chr3g0103061 53.247 77 29 2 3 74 186 260 1.14e-16 76.3
Msa0746160 MtrunA17_Chr2g0302951 31.797 217 126 6 3 202 226 437 2.13e-16 77.4
Msa0746160 MtrunA17_Chr2g0301021 34.266 143 75 4 42 177 151 281 7.81e-14 69.3
Msa0746160 MtrunA17_Chr3g0143011 61.224 49 19 0 122 170 5 53 1.80e-13 63.2
Msa0746160 MtrunA17_Chr8g0380961 28.571 217 133 6 3 202 234 445 3.91e-12 64.7
Msa0746160 MtrunA17_Chr5g0434941 46.575 73 32 1 89 154 2 74 3.56e-11 57.4
Msa0746160 MtrunA17_Chr3g0121211 48.148 54 26 1 114 165 25 78 6.22e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746160 AT2G04160.1 54.419 215 81 5 3 203 191 402 7.66e-63 208
Msa0746160 AT5G59810.1 54.884 215 82 5 3 204 197 409 3.39e-61 204
Msa0746160 AT3G14067.1 48.128 187 80 5 3 174 181 365 1.99e-46 163
Msa0746160 AT3G14240.1 46.429 196 93 5 3 187 176 370 2.16e-45 160
Msa0746160 AT5G59190.1 47.568 185 75 4 4 179 140 311 5.97e-44 156
Msa0746160 AT1G32940.3 45.078 193 85 4 3 174 181 373 2.11e-43 154
Msa0746160 AT1G32960.1 44.792 192 85 4 3 173 184 375 2.39e-43 155
Msa0746160 AT1G32940.4 45.078 193 85 4 3 174 130 322 4.78e-43 154
Msa0746160 AT1G32940.2 45.078 193 85 4 3 174 130 322 4.78e-43 154
Msa0746160 AT1G32940.1 45.078 193 85 4 3 174 181 373 5.21e-43 154
Msa0746160 AT4G10550.4 44.041 193 87 4 3 174 130 322 5.68e-43 153
Msa0746160 AT4G10550.2 44.041 193 87 4 3 174 130 322 5.68e-43 153
Msa0746160 AT4G10550.3 44.041 193 87 4 3 174 202 394 6.69e-43 153
Msa0746160 AT4G10550.1 44.041 193 87 4 3 174 186 378 6.76e-43 153
Msa0746160 AT5G03620.2 45.226 199 90 7 4 191 182 372 5.29e-42 149
Msa0746160 AT5G58830.1 47.429 175 81 4 23 187 184 357 5.87e-42 150
Msa0746160 AT5G45650.2 42.723 213 98 6 3 193 199 409 7.05e-42 150
Msa0746160 AT5G45650.1 42.723 213 98 6 3 193 199 409 7.05e-42 150
Msa0746160 AT5G59090.2 43.781 201 95 5 23 206 183 382 7.28e-42 150
Msa0746160 AT5G59090.3 43.781 201 95 5 23 206 181 380 8.99e-42 150
Msa0746160 AT5G59090.1 43.781 201 95 5 23 206 183 382 9.25e-42 150
Msa0746160 AT5G51750.1 41.837 196 103 4 3 187 193 388 1.07e-41 150
Msa0746160 AT1G20160.3 43.137 204 96 4 3 194 184 379 1.52e-41 148
Msa0746160 AT5G03620.1 45.226 199 90 7 4 191 182 372 1.95e-41 149
Msa0746160 AT4G00230.2 47.196 214 88 7 4 206 183 382 2.57e-41 147
Msa0746160 AT5G67360.1 43.000 200 103 4 3 192 178 376 3.10e-41 149
Msa0746160 AT4G21640.1 42.051 195 92 5 3 178 204 396 3.37e-41 148
Msa0746160 AT1G20160.2 44.162 197 90 4 3 187 145 333 4.17e-41 148
Msa0746160 AT1G20160.1 44.162 197 90 4 3 187 184 372 4.63e-41 148
Msa0746160 AT4G10540.1 42.487 193 90 4 3 174 182 374 5.24e-41 148
Msa0746160 AT4G21650.1 43.590 195 86 4 4 174 203 397 6.66e-41 148
Msa0746160 AT4G00230.1 47.196 214 88 7 4 206 183 382 7.04e-41 147
Msa0746160 AT4G10520.1 45.109 184 89 5 3 174 182 365 7.57e-41 147
Msa0746160 AT5G58840.2 46.023 176 82 5 23 187 186 359 1.14e-40 144
Msa0746160 AT1G66210.1 44.865 185 86 4 3 171 192 376 1.19e-40 147
Msa0746160 AT5G59130.4 42.654 211 96 5 4 205 182 376 1.25e-40 147
Msa0746160 AT1G04110.1 46.486 185 85 6 3 174 185 368 1.27e-40 147
Msa0746160 AT5G59130.3 42.654 211 96 5 4 205 143 337 1.37e-40 146
Msa0746160 AT5G59130.2 42.654 211 96 5 4 205 182 376 1.45e-40 147
Msa0746160 AT5G59130.1 42.654 211 96 5 4 205 178 372 1.49e-40 147
Msa0746160 AT5G58840.3 46.023 176 82 5 23 187 186 359 3.37e-40 144
Msa0746160 AT5G58820.1 44.330 194 97 4 23 206 180 372 5.02e-40 145
Msa0746160 AT5G58840.1 46.023 176 82 5 23 187 186 359 1.22e-39 144
Msa0746160 AT4G21630.1 44.271 192 84 5 4 174 201 390 1.52e-39 144
Msa0746160 AT1G32950.1 45.833 192 84 4 3 174 181 372 1.67e-39 144
Msa0746160 AT1G32950.2 45.833 192 84 4 3 174 130 321 1.72e-39 144
Msa0746160 AT4G26330.2 44.103 195 91 6 3 179 138 332 5.84e-39 142
Msa0746160 AT4G26330.1 44.103 195 91 6 3 179 152 346 7.32e-39 142
Msa0746160 AT3G46840.1 45.226 199 80 7 4 187 181 365 7.75e-39 142
Msa0746160 AT2G05920.1 46.739 184 84 6 3 174 173 354 1.01e-38 141
Msa0746160 AT4G34980.1 46.237 186 86 4 3 174 170 355 1.97e-38 140
Msa0746160 AT4G10530.1 42.632 190 89 5 3 174 182 369 1.73e-37 138
Msa0746160 AT5G11940.1 43.243 185 87 5 3 169 190 374 2.10e-37 138
Msa0746160 AT1G20150.1 40.887 203 102 4 3 194 188 383 3.39e-37 137
Msa0746160 AT5G59120.1 41.294 201 100 5 23 206 182 381 3.61e-37 137
Msa0746160 AT4G10510.2 41.361 191 93 5 3 174 115 305 9.79e-37 135
Msa0746160 AT4G10510.3 41.361 191 93 5 3 174 186 376 1.07e-36 136
Msa0746160 AT4G10510.4 41.361 191 93 5 3 174 130 320 1.09e-36 135
Msa0746160 AT4G10510.1 41.361 191 93 5 3 174 174 364 1.13e-36 135
Msa0746160 AT1G01900.1 44.199 181 92 3 3 174 191 371 7.44e-36 133
Msa0746160 AT1G66220.1 41.885 191 95 4 3 177 190 380 8.52e-36 133
Msa0746160 AT3G46850.1 42.714 199 86 6 4 187 180 365 1.07e-35 133
Msa0746160 AT1G32970.1 42.442 172 81 3 23 176 165 336 1.85e-35 132
Msa0746160 AT5G45640.1 38.991 218 109 7 9 204 169 384 3.95e-33 125
Msa0746160 AT5G59100.1 40.323 186 91 4 4 179 181 356 2.84e-32 123
Msa0746160 AT4G15040.2 41.237 194 89 5 3 187 140 317 5.41e-32 122
Msa0746160 AT4G15040.1 41.237 194 89 5 3 187 140 317 5.41e-32 122
Msa0746160 AT4G21323.1 41.799 189 92 7 3 174 234 421 2.18e-31 120
Msa0746160 AT2G19170.1 36.406 217 115 6 3 201 201 412 1.12e-29 115
Msa0746160 AT2G19170.2 36.406 217 115 6 3 201 201 412 1.12e-29 115
Msa0746160 AT5G67090.1 37.019 208 105 6 3 188 169 372 4.21e-29 114
Msa0746160 AT4G21326.1 39.037 187 97 4 3 173 131 316 1.87e-28 112
Msa0746160 AT4G30020.3 36.058 208 110 6 4 193 203 405 1.18e-27 110
Msa0746160 AT4G30020.1 36.058 208 110 6 4 193 203 405 1.18e-27 110
Msa0746160 AT4G30020.4 36.058 208 110 6 4 193 203 405 1.18e-27 110
Msa0746160 AT4G30020.2 36.058 208 110 6 4 193 203 405 1.18e-27 110
Msa0746160 AT4G20430.2 34.804 204 117 6 3 192 236 437 1.50e-25 104
Msa0746160 AT4G20430.3 34.804 204 117 6 3 192 236 437 1.59e-25 103
Msa0746160 AT4G20430.1 34.804 204 117 6 3 192 236 437 1.59e-25 103
Msa0746160 AT1G30600.1 34.762 210 106 6 3 190 214 414 2.15e-23 97.8
Msa0746160 AT1G62340.1 34.259 216 115 6 4 204 220 423 8.61e-22 93.2
Msa0746160 AT5G44530.2 32.569 218 127 7 3 206 222 433 4.64e-21 91.3
Msa0746160 AT5G44530.1 32.569 218 127 7 3 206 222 433 4.88e-21 91.3
Msa0746160 AT5G44530.3 32.569 218 127 7 3 206 222 433 5.06e-21 90.9
Msa0746160 AT2G39850.1 36.158 177 87 8 4 159 168 339 3.10e-18 82.8

Find 48 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCTAATGCAAGTGTATT+TGG 0.215595 5_1:-68211387 Msa0746160:CDS
ATGTTATGATGCAGATATTT+TGG 0.234820 5_1:-68211292 Msa0746160:CDS
CATCTCTGTAGGAAGCTTAT+TGG 0.238806 5_1:-68211537 Msa0746160:intron
TGATGTGCTTTCAGTGTCTT+TGG 0.258697 5_1:-68211238 Msa0746160:CDS
AACATCATTGTTGTGGCTTC+TGG 0.259841 5_1:-68211147 Msa0746160:CDS
TTCACAAGTTATGTTATTCT+TGG 0.262755 5_1:-68211039 Msa0746160:CDS
GTGGCTTCTGGAGGAAATTC+AGG 0.293434 5_1:-68211135 Msa0746160:CDS
TAGGCTGCAACTCGTGCTTT+TGG 0.355993 5_1:+68211333 None:intergenic
CACATCAACACCATCACTTA+TGG 0.369804 5_1:+68211254 None:intergenic
ACATCAGCGGCACTTGTCAA+TGG 0.432563 5_1:+68210830 None:intergenic
AGTGTATTTGGCTATGGAAA+TGG 0.435029 5_1:-68211375 Msa0746160:CDS
CTGCTATGGTAAAATTCAAC+AGG 0.436042 5_1:+68211204 None:intergenic
TGCAGCCTATAAGGTGTGTT+GGG 0.457401 5_1:-68211319 Msa0746160:intron
TCACACACTTTATCAACTGC+TGG 0.457496 5_1:-68211420 Msa0746160:CDS
AGCCACAACAATGATGTTGT+TGG 0.489321 5_1:+68211152 None:intergenic
CATCAGCGGCACTTGTCAAT+GGG 0.495360 5_1:+68210831 None:intergenic
GATGTGCTTTCAGTGTCTTT+GGG 0.495614 5_1:-68211237 Msa0746160:CDS
TTGGATACAGTACCAGGATC+AGG 0.515963 5_1:+68211111 None:intergenic
CTGTATCCAACTTGGAACCT+TGG 0.518220 5_1:-68211098 Msa0746160:CDS
GTCAATGGGTACAACTTATG+AGG 0.519385 5_1:+68210845 None:intergenic
GGAAATTCAGGACCTGATCC+TGG 0.521391 5_1:-68211123 Msa0746160:CDS
TCCTGGTACTGTATCCAACT+TGG 0.524318 5_1:-68211106 Msa0746160:CDS
TGCCAACAACATCATTGTTG+TGG 0.532046 5_1:-68211154 Msa0746160:CDS
TTGCAGCCTATAAGGTGTGT+TGG 0.532502 5_1:-68211320 Msa0746160:intron
TCCAAGTTGGATACAGTACC+AGG 0.541172 5_1:+68211105 None:intergenic
AATGCAAGTGTATTTGGCTA+TGG 0.545175 5_1:-68211381 Msa0746160:CDS
ATCATTGTTGTGGCTTCTGG+AGG 0.554345 5_1:-68211144 Msa0746160:CDS
ATAATAGAGTTGACAAGGTG+TGG 0.559997 5_1:-68210564 Msa0746160:intron
ATGTATCGCTTCATAGTGCA+CGG 0.562197 5_1:-68211461 Msa0746160:CDS
ACCCTATGGAAATACTGCTA+TGG 0.563868 5_1:+68211190 None:intergenic
GCAGCAACTGTAAGTGTCCA+AGG 0.564146 5_1:+68211081 None:intergenic
GGTGTGGAAGCTTCTCGTGT+AGG 0.564437 5_1:-68210548 None:intergenic
GTGGTAAGTCAAGCTGTGAA+AGG 0.588593 5_1:+68210867 None:intergenic
CACACTTTATCAACTGCTGG+AGG 0.608276 5_1:-68211417 Msa0746160:CDS
GGAAATGGAACAGCAAGTGG+TGG 0.620248 5_1:-68211360 Msa0746160:CDS
TGATGTTGTTGGCAACTGCA+TGG 0.623593 5_1:+68211163 None:intergenic
CATAGTGCACGGGACAGTGA+AGG 0.625920 5_1:-68211450 Msa0746160:CDS
TTTGAAGCTGCCATAAGTGA+TGG 0.630549 5_1:-68211264 Msa0746160:CDS
AAGTGTCCAAGGTTCCAAGT+TGG 0.633379 5_1:+68211092 None:intergenic
TGGTAACAAGAAAATACTCA+AGG 0.634028 5_1:-68211019 Msa0746160:intron
TGAAACAGGAGTGAATGAGA+AGG 0.639350 5_1:-68212216 None:intergenic
GCACGGGACAGTGAAGGTCA+TGG 0.640904 5_1:-68211444 Msa0746160:CDS
TGTATCGCTTCATAGTGCAC+GGG 0.644381 5_1:-68211460 Msa0746160:CDS
ATGATCAAATTTGACATCAG+CGG 0.656924 5_1:+68210817 None:intergenic
TATGGAAATGGAACAGCAAG+TGG 0.660161 5_1:-68211363 Msa0746160:CDS
ATTTGATCATGTGTCTGCGA+AGG 0.660259 5_1:-68210804 Msa0746160:CDS
AATGGGTACAACTTATGAGG+TGG 0.661751 5_1:+68210848 None:intergenic
TGACAATAATAGAGTTGACA+AGG 0.671915 5_1:-68210569 Msa0746160:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATATATGTCAATTT+TGG + chr5_1:68210839-68210858 None:intergenic 10.0%
!!! TTTATTATATTGGTTTTATT+AGG + chr5_1:68211149-68211168 None:intergenic 10.0%
!! AAAAAAAATTAAAATGACAA+AGG + chr5_1:68211820-68211839 None:intergenic 10.0%
!!! AATTTTATATATGTCAATTT+TGG + chr5_1:68210839-68210858 None:intergenic 10.0%
!!! TTTATTATATTGGTTTTATT+AGG + chr5_1:68211149-68211168 None:intergenic 10.0%
!! AAAAAAAATTAAAATGACAA+AGG + chr5_1:68211820-68211839 None:intergenic 10.0%
!! ATTTACATTAATACATTACA+AGG - chr5_1:68210651-68210670 Msa0746160:intron 15.0%
!! ATTGACATATATAAAATTGA+AGG - chr5_1:68210841-68210860 Msa0746160:CDS 15.0%
!! TCAAAGACAATTTATTATAT+TGG + chr5_1:68211159-68211178 None:intergenic 15.0%
!!! TATTGTTTATCTCTAAAATT+TGG - chr5_1:68211757-68211776 Msa0746160:intron 15.0%
!!! ATTGTTTATCTCTAAAATTT+GGG - chr5_1:68211758-68211777 Msa0746160:intron 15.0%
!!! ACTTGTTTGAAATTTTTTTT+AGG - chr5_1:68211854-68211873 Msa0746160:intron 15.0%
!!! CTTGTTTGAAATTTTTTTTA+GGG - chr5_1:68211855-68211874 Msa0746160:intron 15.0%
!! ATTTACATTAATACATTACA+AGG - chr5_1:68210651-68210670 Msa0746160:intron 15.0%
!! ATTGACATATATAAAATTGA+AGG - chr5_1:68210841-68210860 Msa0746160:CDS 15.0%
!! TCAAAGACAATTTATTATAT+TGG + chr5_1:68211159-68211178 None:intergenic 15.0%
!!! TATTGTTTATCTCTAAAATT+TGG - chr5_1:68211757-68211776 Msa0746160:intron 15.0%
!!! ATTGTTTATCTCTAAAATTT+GGG - chr5_1:68211758-68211777 Msa0746160:intron 15.0%
!!! ACTTGTTTGAAATTTTTTTT+AGG - chr5_1:68211854-68211873 Msa0746160:intron 15.0%
!!! CTTGTTTGAAATTTTTTTTA+GGG - chr5_1:68211855-68211874 Msa0746160:intron 15.0%
!!! AATTGACCACATATTTTTTA+GGG + chr5_1:68210757-68210776 None:intergenic 20.0%
!!! AAATTGACCACATATTTTTT+AGG + chr5_1:68210758-68210777 None:intergenic 20.0%
!!! AATATTGTAATTTTCACTGT+TGG + chr5_1:68210893-68210912 None:intergenic 20.0%
!! CTAATCTTTACAAATTATGA+TGG - chr5_1:68211052-68211071 Msa0746160:CDS 20.0%
!!! TTTTCTATATGCTCATAATT+TGG - chr5_1:68211182-68211201 Msa0746160:intron 20.0%
!!! TTGTTTATCTCTAAAATTTG+GGG - chr5_1:68211759-68211778 Msa0746160:intron 20.0%
!! TACAAAAAAGTTATTTGAGA+AGG + chr5_1:68212003-68212022 None:intergenic 20.0%
!! AATTGGAAATTCATTACTTA+AGG + chr5_1:68212050-68212069 None:intergenic 20.0%
!! AAGGCTATAAAAAATTGAAA+TGG + chr5_1:68212097-68212116 None:intergenic 20.0%
!!! AATTGACCACATATTTTTTA+GGG + chr5_1:68210757-68210776 None:intergenic 20.0%
!!! AAATTGACCACATATTTTTT+AGG + chr5_1:68210758-68210777 None:intergenic 20.0%
!!! AATATTGTAATTTTCACTGT+TGG + chr5_1:68210893-68210912 None:intergenic 20.0%
!! CTAATCTTTACAAATTATGA+TGG - chr5_1:68211052-68211071 Msa0746160:CDS 20.0%
!!! TTTTCTATATGCTCATAATT+TGG - chr5_1:68211182-68211201 Msa0746160:intron 20.0%
!!! TTGTTTATCTCTAAAATTTG+GGG - chr5_1:68211759-68211778 Msa0746160:intron 20.0%
!! TACAAAAAAGTTATTTGAGA+AGG + chr5_1:68212003-68212022 None:intergenic 20.0%
!! AATTGGAAATTCATTACTTA+AGG + chr5_1:68212050-68212069 None:intergenic 20.0%
!! AAGGCTATAAAAAATTGAAA+TGG + chr5_1:68212097-68212116 None:intergenic 20.0%
! TATTAATGTAAATGCATTGC+AGG + chr5_1:68210644-68210663 None:intergenic 25.0%
! AGCATGGTATAATTTCATAT+TGG - chr5_1:68210689-68210708 Msa0746160:intron 25.0%
! GCATGGTATAATTTCATATT+GGG - chr5_1:68210690-68210709 Msa0746160:intron 25.0%
! TTTGATCCCTAAAAAATATG+TGG - chr5_1:68210748-68210767 Msa0746160:intron 25.0%
! AATTGAAGGATCAAATCAAA+CGG - chr5_1:68210855-68210874 Msa0746160:CDS 25.0%
!! ATCAAATCAAACGGAAATTT+TGG - chr5_1:68210864-68210883 Msa0746160:CDS 25.0%
!! TCAAATCAAACGGAAATTTT+GGG - chr5_1:68210865-68210884 Msa0746160:CDS 25.0%
!!! GGAGCAAGATATTTTTATAA+AGG - chr5_1:68211235-68211254 Msa0746160:CDS 25.0%
!! ATGTTATGATGCAGATATTT+TGG - chr5_1:68211459-68211478 Msa0746160:CDS 25.0%
! TTCACAAGTTATGTTATTCT+TGG - chr5_1:68211712-68211731 Msa0746160:intron 25.0%
! TATTAATGTAAATGCATTGC+AGG + chr5_1:68210644-68210663 None:intergenic 25.0%
! AGCATGGTATAATTTCATAT+TGG - chr5_1:68210689-68210708 Msa0746160:intron 25.0%
! GCATGGTATAATTTCATATT+GGG - chr5_1:68210690-68210709 Msa0746160:intron 25.0%
! TTTGATCCCTAAAAAATATG+TGG - chr5_1:68210748-68210767 Msa0746160:intron 25.0%
! AATTGAAGGATCAAATCAAA+CGG - chr5_1:68210855-68210874 Msa0746160:CDS 25.0%
!! ATCAAATCAAACGGAAATTT+TGG - chr5_1:68210864-68210883 Msa0746160:CDS 25.0%
!! TCAAATCAAACGGAAATTTT+GGG - chr5_1:68210865-68210884 Msa0746160:CDS 25.0%
!!! GGAGCAAGATATTTTTATAA+AGG - chr5_1:68211235-68211254 Msa0746160:CDS 25.0%
!! ATGTTATGATGCAGATATTT+TGG - chr5_1:68211459-68211478 Msa0746160:CDS 25.0%
! TTCACAAGTTATGTTATTCT+TGG - chr5_1:68211712-68211731 Msa0746160:intron 25.0%
!! TTCAAGCTTTAGGAGAATTA+AGG + chr5_1:68210597-68210616 None:intergenic 30.0%
TTTAGACTGATGAAGTTTAC+TGG + chr5_1:68210788-68210807 None:intergenic 30.0%
! AACTTCATCAGTCTAAAATG+AGG - chr5_1:68210791-68210810 Msa0746160:intron 30.0%
! ACTTCATCAGTCTAAAATGA+GGG - chr5_1:68210792-68210811 Msa0746160:intron 30.0%
! CAAATCAAACGGAAATTTTG+GGG - chr5_1:68210866-68210885 Msa0746160:CDS 30.0%
!! TTAAGCTTCAGAATTTGCTA+TGG - chr5_1:68211018-68211037 Msa0746160:intron 30.0%
! GGATTTTATTACATCTCTGT+AGG - chr5_1:68211203-68211222 Msa0746160:intron 30.0%
! ACTATGAAGCGATACATTTT+TGG + chr5_1:68211287-68211306 None:intergenic 30.0%
TGGTAACAAGAAAATACTCA+AGG - chr5_1:68211732-68211751 Msa0746160:intron 30.0%
ATGATCAAATTTGACATCAG+CGG + chr5_1:68211937-68211956 None:intergenic 30.0%
AAAACAGTCTCTGAGTAAAT+TGG + chr5_1:68212067-68212086 None:intergenic 30.0%
TAAGGCAAAGGGAAAAATAT+TGG - chr5_1:68212146-68212165 Msa0746160:intron 30.0%
AAAATATTGGTATGTCTTCG+AGG - chr5_1:68212159-68212178 Msa0746160:intron 30.0%
TGACAATAATAGAGTTGACA+AGG - chr5_1:68212182-68212201 Msa0746160:intron 30.0%
!! TTCAAGCTTTAGGAGAATTA+AGG + chr5_1:68210597-68210616 None:intergenic 30.0%
TTTAGACTGATGAAGTTTAC+TGG + chr5_1:68210788-68210807 None:intergenic 30.0%
! AACTTCATCAGTCTAAAATG+AGG - chr5_1:68210791-68210810 Msa0746160:intron 30.0%
! ACTTCATCAGTCTAAAATGA+GGG - chr5_1:68210792-68210811 Msa0746160:intron 30.0%
! CAAATCAAACGGAAATTTTG+GGG - chr5_1:68210866-68210885 Msa0746160:CDS 30.0%
!! TTAAGCTTCAGAATTTGCTA+TGG - chr5_1:68211018-68211037 Msa0746160:intron 30.0%
! GGATTTTATTACATCTCTGT+AGG - chr5_1:68211203-68211222 Msa0746160:intron 30.0%
! ACTATGAAGCGATACATTTT+TGG + chr5_1:68211287-68211306 None:intergenic 30.0%
TGGTAACAAGAAAATACTCA+AGG - chr5_1:68211732-68211751 Msa0746160:intron 30.0%
ATGATCAAATTTGACATCAG+CGG + chr5_1:68211937-68211956 None:intergenic 30.0%
AAAACAGTCTCTGAGTAAAT+TGG + chr5_1:68212067-68212086 None:intergenic 30.0%
TAAGGCAAAGGGAAAAATAT+TGG - chr5_1:68212146-68212165 Msa0746160:intron 30.0%
AAAATATTGGTATGTCTTCG+AGG - chr5_1:68212159-68212178 Msa0746160:intron 30.0%
TGACAATAATAGAGTTGACA+AGG - chr5_1:68212182-68212201 Msa0746160:intron 30.0%
TAAGGAAGGTGAAAGACAAT+TGG + chr5_1:68210579-68210598 None:intergenic 35.0%
!! AGCTTTAGGAGAATTAAGGA+AGG + chr5_1:68210593-68210612 None:intergenic 35.0%
AATTCTCCTAAAGCTTGAAC+AGG - chr5_1:68210598-68210617 Msa0746160:intron 35.0%
AATTCACCTGTTCAAGCTTT+AGG + chr5_1:68210607-68210626 None:intergenic 35.0%
GAAACACTTCACATTAAGCA+TGG - chr5_1:68210673-68210692 Msa0746160:intron 35.0%
!!! GATACATTTTTGGCTCTATG+AGG + chr5_1:68211277-68211296 None:intergenic 35.0%
GTTGCTAATGCAAGTGTATT+TGG - chr5_1:68211364-68211383 Msa0746160:CDS 35.0%
AATGCAAGTGTATTTGGCTA+TGG - chr5_1:68211370-68211389 Msa0746160:CDS 35.0%
AGTGTATTTGGCTATGGAAA+TGG - chr5_1:68211376-68211395 Msa0746160:CDS 35.0%
!!! TATGATGCAGATATTTTGGC+TGG - chr5_1:68211463-68211482 Msa0746160:CDS 35.0%
CTGCTATGGTAAAATTCAAC+AGG + chr5_1:68211550-68211569 None:intergenic 35.0%
TACCATAGCAGTATTTCCAT+AGG - chr5_1:68211559-68211578 Msa0746160:intron 35.0%
ACCATAGCAGTATTTCCATA+GGG - chr5_1:68211560-68211579 Msa0746160:intron 35.0%
! ATTTTTCCCTTTGCCTTATG+TGG + chr5_1:68212144-68212163 None:intergenic 35.0%
ATAATAGAGTTGACAAGGTG+TGG - chr5_1:68212187-68212206 Msa0746160:intron 35.0%
TAAGGAAGGTGAAAGACAAT+TGG + chr5_1:68210579-68210598 None:intergenic 35.0%
!! AGCTTTAGGAGAATTAAGGA+AGG + chr5_1:68210593-68210612 None:intergenic 35.0%
AATTCTCCTAAAGCTTGAAC+AGG - chr5_1:68210598-68210617 Msa0746160:intron 35.0%
AATTCACCTGTTCAAGCTTT+AGG + chr5_1:68210607-68210626 None:intergenic 35.0%
GAAACACTTCACATTAAGCA+TGG - chr5_1:68210673-68210692 Msa0746160:intron 35.0%
!!! GATACATTTTTGGCTCTATG+AGG + chr5_1:68211277-68211296 None:intergenic 35.0%
GTTGCTAATGCAAGTGTATT+TGG - chr5_1:68211364-68211383 Msa0746160:CDS 35.0%
AATGCAAGTGTATTTGGCTA+TGG - chr5_1:68211370-68211389 Msa0746160:CDS 35.0%
AGTGTATTTGGCTATGGAAA+TGG - chr5_1:68211376-68211395 Msa0746160:CDS 35.0%
!!! TATGATGCAGATATTTTGGC+TGG - chr5_1:68211463-68211482 Msa0746160:CDS 35.0%
CTGCTATGGTAAAATTCAAC+AGG + chr5_1:68211550-68211569 None:intergenic 35.0%
TACCATAGCAGTATTTCCAT+AGG - chr5_1:68211559-68211578 Msa0746160:intron 35.0%
ACCATAGCAGTATTTCCATA+GGG - chr5_1:68211560-68211579 Msa0746160:intron 35.0%
! ATTTTTCCCTTTGCCTTATG+TGG + chr5_1:68212144-68212163 None:intergenic 35.0%
ATAATAGAGTTGACAAGGTG+TGG - chr5_1:68212187-68212206 Msa0746160:intron 35.0%
AAGGTGAAAGACAATTGGAG+GGG + chr5_1:68210574-68210593 None:intergenic 40.0%
GAAGGTGAAAGACAATTGGA+GGG + chr5_1:68210575-68210594 None:intergenic 40.0%
AATGCATTGCAGGAGAAGAT+GGG + chr5_1:68210634-68210653 None:intergenic 40.0%
AAATGCATTGCAGGAGAAGA+TGG + chr5_1:68210635-68210654 None:intergenic 40.0%
!! TGGTTTGCGTAGCTAACTTT+TGG + chr5_1:68210819-68210838 None:intergenic 40.0%
CATCTCTGTAGGAAGCTTAT+TGG - chr5_1:68211214-68211233 Msa0746160:CDS 40.0%
ATGTATCGCTTCATAGTGCA+CGG - chr5_1:68211290-68211309 Msa0746160:CDS 40.0%
TCACACACTTTATCAACTGC+TGG - chr5_1:68211331-68211350 Msa0746160:intron 40.0%
TATGGAAATGGAACAGCAAG+TGG - chr5_1:68211388-68211407 Msa0746160:CDS 40.0%
TGAATCCCAACACACCTTAT+AGG + chr5_1:68211440-68211459 None:intergenic 40.0%
! TTTGAAGCTGCCATAAGTGA+TGG - chr5_1:68211487-68211506 Msa0746160:CDS 40.0%
CACATCAACACCATCACTTA+TGG + chr5_1:68211500-68211519 None:intergenic 40.0%
TGATGTGCTTTCAGTGTCTT+TGG - chr5_1:68211513-68211532 Msa0746160:CDS 40.0%
GATGTGCTTTCAGTGTCTTT+GGG - chr5_1:68211514-68211533 Msa0746160:CDS 40.0%
ACCCTATGGAAATACTGCTA+TGG + chr5_1:68211564-68211583 None:intergenic 40.0%
TGCCAACAACATCATTGTTG+TGG - chr5_1:68211597-68211616 Msa0746160:intron 40.0%
AGCCACAACAATGATGTTGT+TGG + chr5_1:68211602-68211621 None:intergenic 40.0%
AACATCATTGTTGTGGCTTC+TGG - chr5_1:68211604-68211623 Msa0746160:intron 40.0%
AATGGGTACAACTTATGAGG+TGG + chr5_1:68211906-68211925 None:intergenic 40.0%
GTCAATGGGTACAACTTATG+AGG + chr5_1:68211909-68211928 None:intergenic 40.0%
ATTTGATCATGTGTCTGCGA+AGG - chr5_1:68211947-68211966 Msa0746160:intron 40.0%
!!! TATAGCCTTTTTTGCGACGA+TGG - chr5_1:68212108-68212127 Msa0746160:intron 40.0%
TCTTGATCCACATAAGGCAA+AGG - chr5_1:68212134-68212153 Msa0746160:intron 40.0%
CTTGATCCACATAAGGCAAA+GGG - chr5_1:68212135-68212154 Msa0746160:intron 40.0%
AAGGTGAAAGACAATTGGAG+GGG + chr5_1:68210574-68210593 None:intergenic 40.0%
GAAGGTGAAAGACAATTGGA+GGG + chr5_1:68210575-68210594 None:intergenic 40.0%
AATGCATTGCAGGAGAAGAT+GGG + chr5_1:68210634-68210653 None:intergenic 40.0%
AAATGCATTGCAGGAGAAGA+TGG + chr5_1:68210635-68210654 None:intergenic 40.0%
!! TGGTTTGCGTAGCTAACTTT+TGG + chr5_1:68210819-68210838 None:intergenic 40.0%
CATCTCTGTAGGAAGCTTAT+TGG - chr5_1:68211214-68211233 Msa0746160:CDS 40.0%
ATGTATCGCTTCATAGTGCA+CGG - chr5_1:68211290-68211309 Msa0746160:CDS 40.0%
TCACACACTTTATCAACTGC+TGG - chr5_1:68211331-68211350 Msa0746160:intron 40.0%
TATGGAAATGGAACAGCAAG+TGG - chr5_1:68211388-68211407 Msa0746160:CDS 40.0%
TGAATCCCAACACACCTTAT+AGG + chr5_1:68211440-68211459 None:intergenic 40.0%
! TTTGAAGCTGCCATAAGTGA+TGG - chr5_1:68211487-68211506 Msa0746160:CDS 40.0%
CACATCAACACCATCACTTA+TGG + chr5_1:68211500-68211519 None:intergenic 40.0%
TGATGTGCTTTCAGTGTCTT+TGG - chr5_1:68211513-68211532 Msa0746160:CDS 40.0%
GATGTGCTTTCAGTGTCTTT+GGG - chr5_1:68211514-68211533 Msa0746160:CDS 40.0%
ACCCTATGGAAATACTGCTA+TGG + chr5_1:68211564-68211583 None:intergenic 40.0%
TGCCAACAACATCATTGTTG+TGG - chr5_1:68211597-68211616 Msa0746160:intron 40.0%
AGCCACAACAATGATGTTGT+TGG + chr5_1:68211602-68211621 None:intergenic 40.0%
AACATCATTGTTGTGGCTTC+TGG - chr5_1:68211604-68211623 Msa0746160:intron 40.0%
AATGGGTACAACTTATGAGG+TGG + chr5_1:68211906-68211925 None:intergenic 40.0%
GTCAATGGGTACAACTTATG+AGG + chr5_1:68211909-68211928 None:intergenic 40.0%
ATTTGATCATGTGTCTGCGA+AGG - chr5_1:68211947-68211966 Msa0746160:intron 40.0%
!!! TATAGCCTTTTTTGCGACGA+TGG - chr5_1:68212108-68212127 Msa0746160:intron 40.0%
TCTTGATCCACATAAGGCAA+AGG - chr5_1:68212134-68212153 Msa0746160:intron 40.0%
CTTGATCCACATAAGGCAAA+GGG - chr5_1:68212135-68212154 Msa0746160:intron 40.0%
GGAAGGTGAAAGACAATTGG+AGG + chr5_1:68210576-68210595 None:intergenic 45.0%
ATGCATTGCAGGAGAAGATG+GGG + chr5_1:68210633-68210652 None:intergenic 45.0%
TGTATCGCTTCATAGTGCAC+GGG - chr5_1:68211291-68211310 Msa0746160:CDS 45.0%
CACACTTTATCAACTGCTGG+AGG - chr5_1:68211334-68211353 Msa0746160:intron 45.0%
TTGCAGCCTATAAGGTGTGT+TGG - chr5_1:68211431-68211450 Msa0746160:CDS 45.0%
TGCAGCCTATAAGGTGTGTT+GGG - chr5_1:68211432-68211451 Msa0746160:CDS 45.0%
AACTGCATGGAAAGACCCTA+TGG + chr5_1:68211578-68211597 None:intergenic 45.0%
TGATGTTGTTGGCAACTGCA+TGG + chr5_1:68211591-68211610 None:intergenic 45.0%
ATCATTGTTGTGGCTTCTGG+AGG - chr5_1:68211607-68211626 Msa0746160:intron 45.0%
TTGGATACAGTACCAGGATC+AGG + chr5_1:68211643-68211662 None:intergenic 45.0%
TCCTGGTACTGTATCCAACT+TGG - chr5_1:68211645-68211664 Msa0746160:intron 45.0%
! TCCAAGTTGGATACAGTACC+AGG + chr5_1:68211649-68211668 None:intergenic 45.0%
CTGTATCCAACTTGGAACCT+TGG - chr5_1:68211653-68211672 Msa0746160:intron 45.0%
AAGTGTCCAAGGTTCCAAGT+TGG + chr5_1:68211662-68211681 None:intergenic 45.0%
GTGGTAAGTCAAGCTGTGAA+AGG + chr5_1:68211887-68211906 None:intergenic 45.0%
TGGAGCTCTTGATCCACATA+AGG - chr5_1:68212128-68212147 Msa0746160:intron 45.0%
GGAAGGTGAAAGACAATTGG+AGG + chr5_1:68210576-68210595 None:intergenic 45.0%
ATGCATTGCAGGAGAAGATG+GGG + chr5_1:68210633-68210652 None:intergenic 45.0%
TGTATCGCTTCATAGTGCAC+GGG - chr5_1:68211291-68211310 Msa0746160:CDS 45.0%
CACACTTTATCAACTGCTGG+AGG - chr5_1:68211334-68211353 Msa0746160:intron 45.0%
TTGCAGCCTATAAGGTGTGT+TGG - chr5_1:68211431-68211450 Msa0746160:CDS 45.0%
TGCAGCCTATAAGGTGTGTT+GGG - chr5_1:68211432-68211451 Msa0746160:CDS 45.0%
AACTGCATGGAAAGACCCTA+TGG + chr5_1:68211578-68211597 None:intergenic 45.0%
TGATGTTGTTGGCAACTGCA+TGG + chr5_1:68211591-68211610 None:intergenic 45.0%
ATCATTGTTGTGGCTTCTGG+AGG - chr5_1:68211607-68211626 Msa0746160:intron 45.0%
TTGGATACAGTACCAGGATC+AGG + chr5_1:68211643-68211662 None:intergenic 45.0%
TCCTGGTACTGTATCCAACT+TGG - chr5_1:68211645-68211664 Msa0746160:intron 45.0%
! TCCAAGTTGGATACAGTACC+AGG + chr5_1:68211649-68211668 None:intergenic 45.0%
CTGTATCCAACTTGGAACCT+TGG - chr5_1:68211653-68211672 Msa0746160:intron 45.0%
AAGTGTCCAAGGTTCCAAGT+TGG + chr5_1:68211662-68211681 None:intergenic 45.0%
GTGGTAAGTCAAGCTGTGAA+AGG + chr5_1:68211887-68211906 None:intergenic 45.0%
TGGAGCTCTTGATCCACATA+AGG - chr5_1:68212128-68212147 Msa0746160:intron 45.0%
!!! AAATAAAATTTTGTAATTTT+TGG - chr5_1:68210724-68210743 Msa0746160:intron 5.0%
!!! AAATAAAATTTTGTAATTTT+TGG - chr5_1:68210724-68210743 Msa0746160:intron 5.0%
GGAAATGGAACAGCAAGTGG+TGG - chr5_1:68211391-68211410 Msa0746160:CDS 50.0%
! TAGGCTGCAACTCGTGCTTT+TGG + chr5_1:68211421-68211440 None:intergenic 50.0%
AGCACGAGTTGCAGCCTATA+AGG - chr5_1:68211423-68211442 Msa0746160:CDS 50.0%
! GTGGCTTCTGGAGGAAATTC+AGG - chr5_1:68211616-68211635 Msa0746160:intron 50.0%
GGAAATTCAGGACCTGATCC+TGG - chr5_1:68211628-68211647 Msa0746160:intron 50.0%
GCAGCAACTGTAAGTGTCCA+AGG + chr5_1:68211673-68211692 None:intergenic 50.0%
CATCAGCGGCACTTGTCAAT+GGG + chr5_1:68211923-68211942 None:intergenic 50.0%
ACATCAGCGGCACTTGTCAA+TGG + chr5_1:68211924-68211943 None:intergenic 50.0%
GAGCTCCATCGTCGCAAAAA+AGG + chr5_1:68212116-68212135 None:intergenic 50.0%
GGAAATGGAACAGCAAGTGG+TGG - chr5_1:68211391-68211410 Msa0746160:CDS 50.0%
! TAGGCTGCAACTCGTGCTTT+TGG + chr5_1:68211421-68211440 None:intergenic 50.0%
AGCACGAGTTGCAGCCTATA+AGG - chr5_1:68211423-68211442 Msa0746160:CDS 50.0%
! GTGGCTTCTGGAGGAAATTC+AGG - chr5_1:68211616-68211635 Msa0746160:intron 50.0%
GGAAATTCAGGACCTGATCC+TGG - chr5_1:68211628-68211647 Msa0746160:intron 50.0%
GCAGCAACTGTAAGTGTCCA+AGG + chr5_1:68211673-68211692 None:intergenic 50.0%
CATCAGCGGCACTTGTCAAT+GGG + chr5_1:68211923-68211942 None:intergenic 50.0%
ACATCAGCGGCACTTGTCAA+TGG + chr5_1:68211924-68211943 None:intergenic 50.0%
GAGCTCCATCGTCGCAAAAA+AGG + chr5_1:68212116-68212135 None:intergenic 50.0%
CATAGTGCACGGGACAGTGA+AGG - chr5_1:68211301-68211320 Msa0746160:CDS 55.0%
CATAGTGCACGGGACAGTGA+AGG - chr5_1:68211301-68211320 Msa0746160:CDS 55.0%
GCACGGGACAGTGAAGGTCA+TGG - chr5_1:68211307-68211326 Msa0746160:CDS 60.0%
GCACGGGACAGTGAAGGTCA+TGG - chr5_1:68211307-68211326 Msa0746160:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 68210549 68212224 68210549 ID=Msa0746160;Name=Msa0746160
chr5_1 mRNA 68210549 68212224 68210549 ID=Msa0746160-mRNA-1;Parent=Msa0746160;Name=Msa0746160-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|0.83|0.4|0.33|6|0|212
chr5_1 exon 68212217 68212224 68212217 ID=Msa0746160-mRNA-1:exon:20363;Parent=Msa0746160-mRNA-1
chr5_1 exon 68211344 68211548 68211344 ID=Msa0746160-mRNA-1:exon:20362;Parent=Msa0746160-mRNA-1
chr5_1 exon 68211205 68211328 68211205 ID=Msa0746160-mRNA-1:exon:20361;Parent=Msa0746160-mRNA-1
chr5_1 exon 68211020 68211192 68211020 ID=Msa0746160-mRNA-1:exon:20360;Parent=Msa0746160-mRNA-1
chr5_1 exon 68210800 68210897 68210800 ID=Msa0746160-mRNA-1:exon:20359;Parent=Msa0746160-mRNA-1
chr5_1 exon 68210549 68210579 68210549 ID=Msa0746160-mRNA-1:exon:20358;Parent=Msa0746160-mRNA-1
chr5_1 CDS 68212217 68212224 68212217 ID=Msa0746160-mRNA-1:cds;Parent=Msa0746160-mRNA-1
chr5_1 CDS 68211344 68211548 68211344 ID=Msa0746160-mRNA-1:cds;Parent=Msa0746160-mRNA-1
chr5_1 CDS 68211205 68211328 68211205 ID=Msa0746160-mRNA-1:cds;Parent=Msa0746160-mRNA-1
chr5_1 CDS 68211020 68211192 68211020 ID=Msa0746160-mRNA-1:cds;Parent=Msa0746160-mRNA-1
chr5_1 CDS 68210800 68210897 68210800 ID=Msa0746160-mRNA-1:cds;Parent=Msa0746160-mRNA-1
chr5_1 CDS 68210549 68210579 68210549 ID=Msa0746160-mRNA-1:cds;Parent=Msa0746160-mRNA-1
Gene Sequence

>Msa0746160

ATGAGAAGGAAGCTTATTGGAGCAAGATATTTTTATAAAGGCTTTCTGCTTGCAAATCCTCATAGAGCCAAAAATGTATCGCTTCATAGTGCACGGGACAGTGAAGGTCATGGTTCACACACTTTATCAACTGCTGGAGGAAATTTTGTTGCTAATGCAAGTGTATTTGGCTATGGAAATGGAACAGCAAGTGGTGGATCACCAAAAGCACGAGTGTGTTGGGATTCATGTTATGATGCAGATATTTTGGCTGGTTTTGAAGCTGCCATAAGTGATGGTGTTGATGTGCTTTCAGTGTCTTTGGGTAGTAATTTTCCTGTTGAATTTTACCATAGCAGGTCTTTCCATGCAGTTGCCAACAACATCATTGTTGTGGCTTCTGGAGGAAATTCAGGACCTGATCCTGGTACTGTATCCAACTTGGAACCTTGGACACTTACAGTTGCTGCAAGCACAATTGATAGAGATTTCACAAGTTATGTTATTCTTGGTAACAAGAAAATACTCAAGGGAGCTAGCCTTTCACAGCTTGACTTACCACCTCATAAGTTGTACCCATTGACAAGTGCCGCTGATGTCAAATTTGATCATGTGTCTGCGAAGGATGCAGTTGACAAGGTGTGGAAGCTTCTCGTGTAG
Protein sequence

>Msa0746160

MRRKLIGARYFYKGFLLANPHRAKNVSLHSARDSEGHGSHTLSTAGGNFVANASVFGYGNGTASGGSPKARVCWDSCYDADILAGFEAAISDGVDVLSVSLGSNFPVEFYHSRSFHAVANNIIVVASGGNSGPDPGTVSNLEPWTLTVAASTIDRDFTSYVILGNKKILKGASLSQLDLPPHKLYPLTSAADVKFDHVSAKDAVDKVWKLLV*