AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0495320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495320 MtrunA17_Chr3g0098611 98.639 147 2 0 1 147 1 147 1.12e-107 302
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495320 AT5G54855.1 67.123 146 48 0 1 146 1 146 4.55e-73 215

Find 48 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTCCCTAACGAAATATT+TGG 0.191807 3_4:+24455610 None:intergenic
CGTCTTGGTGGTGGTAGTTC+GGG 0.246569 3_4:+24459940 Msa0495320:CDS
TGATAGAAAATCATTGTAAA+TGG 0.287374 3_4:+24460230 Msa0495320:three_prime_UTR
GTTTGTGGTGATTCTTCTCT+TGG 0.332875 3_4:+24455880 Msa0495320:CDS
TCGTCTTGGTGGTGGTAGTT+CGG 0.336867 3_4:+24459939 Msa0495320:CDS
CGGCGAAGTTCTAAATTATC+AGG 0.338733 3_4:+24459807 Msa0495320:CDS
ATGTTTATGTAGGAAACAAT+AGG 0.396784 3_4:-24460373 None:intergenic
CCTTCAAGAACATGATCTTC+AGG 0.398537 3_4:-24455904 None:intergenic
ATTTAGAACTTCGCCGGACT+TGG 0.414951 3_4:-24459800 None:intergenic
TTCAGTTACAATCATCCATC+GGG 0.416663 3_4:+24459970 Msa0495320:CDS
TATTCTTAACCACCCATGTA+TGG 0.432663 3_4:+24460327 Msa0495320:three_prime_UTR
TTGTCCCTAACGAAATATTT+GGG 0.439982 3_4:+24455611 None:intergenic
ATGGCATTGCCATCTTAGAT+AGG 0.447300 3_4:+24460249 Msa0495320:three_prime_UTR
CCTGAAGATCATGTTCTTGA+AGG 0.449881 3_4:+24455904 Msa0495320:CDS
CATGAGCACTGCACTCGTCT+TGG 0.451233 3_4:+24459925 Msa0495320:CDS
TATGAACACATGCAAATGAA+TGG 0.460936 3_4:+24460285 Msa0495320:three_prime_UTR
AATGAAGCAGAAGATGATAG+TGG 0.473190 3_4:+24455774 Msa0495320:CDS
TCAGGCATTTACAGATGCTA+AGG 0.492192 3_4:+24459825 Msa0495320:CDS
CATGATTAACCTATCTAAGA+TGG 0.495829 3_4:-24460258 None:intergenic
CAGTATGTTGGAACATTGAC+AGG 0.497172 3_4:-24460027 None:intergenic
GTTCTTTGCATAACCAAGTC+CGG 0.497448 3_4:+24459787 Msa0495320:CDS
ATTGATTGTGTTGTCGATGA+TGG 0.498614 3_4:+24455798 Msa0495320:CDS
CAAGACGAGTGCAGTGCTCA+TGG 0.501517 3_4:-24459924 None:intergenic
GTGTTAATCATGACCATACA+TGG 0.517397 3_4:-24460340 None:intergenic
TTGAGTGTAAGTGGTTGGAC+TGG 0.520329 3_4:+24455829 Msa0495320:CDS
AGAGTTGTTTGTGATGTTTG+TGG 0.528736 3_4:+24455865 Msa0495320:CDS
TGCTCATGGAAACTACTGAT+TGG 0.530403 3_4:-24459910 None:intergenic
CAGGCATTTACAGATGCTAA+GGG 0.533023 3_4:+24459826 Msa0495320:CDS
GAGCACTGCACTCGTCTTGG+TGG 0.534296 3_4:+24459928 Msa0495320:CDS
GCATCCCAACGATCACTCTC+AGG 0.535746 3_4:-24459874 None:intergenic
CTGATAATTTAGAACTTCGC+CGG 0.538086 3_4:-24459806 None:intergenic
CACTGCACTCGTCTTGGTGG+TGG 0.544640 3_4:+24459931 Msa0495320:CDS
ATTCAGTTACAATCATCCAT+CGG 0.553429 3_4:+24459969 Msa0495320:CDS
CAGTGTTATTCGAGAAAGTG+TGG 0.555044 3_4:+24455715 Msa0495320:five_prime_UTR
AATGCCTGAGAGTGATCGTT+GGG 0.564183 3_4:+24459870 Msa0495320:CDS
CAATGCCTGAGAGTGATCGT+TGG 0.565355 3_4:+24459869 Msa0495320:CDS
GTCTTGGTGGTGGTAGTTCG+GGG 0.567915 3_4:+24459941 Msa0495320:CDS
ATATATCAGATGCAGTATGT+TGG 0.578522 3_4:-24460039 None:intergenic
AGTGATTCAGCGAGTGTCGG+TGG 0.585112 3_4:+24455654 Msa0495320:five_prime_UTR
CTCAGTGATTCAGCGAGTGT+CGG 0.594439 3_4:+24455651 Msa0495320:five_prime_UTR
GGTTGGACTGGTGAAATTCG+TGG 0.595778 3_4:+24455841 Msa0495320:CDS
ATGTTGGAACATTGACAGGT+TGG 0.603546 3_4:-24460023 None:intergenic
ATTGACAGGTTGGTAAACAA+AGG 0.608179 3_4:-24460013 None:intergenic
TAATCATGACCATACATGGG+TGG 0.708010 3_4:-24460336 None:intergenic
ACAGCATGTGAATACCCCGA+TGG 0.710104 3_4:-24459985 None:intergenic
AGGCATTTACAGATGCTAAG+GGG 0.710498 3_4:+24459827 Msa0495320:CDS
TGTTAATCATGACCATACAT+GGG 0.748299 3_4:-24460339 None:intergenic
TCAGTTACAATCATCCATCG+GGG 0.754079 3_4:+24459971 Msa0495320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAATTAGTAAATC+TGG + chr3_4:24458158-24458177 Msa0495320:intron 10.0%
!!! TTGTTATTCTATAAAGATTT+TGG + chr3_4:24456458-24456477 Msa0495320:intron 15.0%
!!! TATTTTTAAGGTTATTCTAA+GGG - chr3_4:24457510-24457529 None:intergenic 15.0%
!! ATATTATGAAAAAACTTAAG+AGG + chr3_4:24458748-24458767 Msa0495320:intron 15.0%
!!! ATATTTTTCACTAATCAATT+TGG + chr3_4:24458887-24458906 Msa0495320:intron 15.0%
!! TAGATACCAATAATAATTTA+AGG + chr3_4:24459287-24459306 Msa0495320:intron 15.0%
!! CTATTTCCTTAAATTATTAT+TGG - chr3_4:24459296-24459315 None:intergenic 15.0%
!! ATTCATGTTAAAATAAATCT+GGG - chr3_4:24459684-24459703 None:intergenic 15.0%
!! TATTCATGTTAAAATAAATC+TGG - chr3_4:24459685-24459704 None:intergenic 15.0%
!!! TTTTGATTGAGTTTATGAAA+TGG + chr3_4:24455970-24455989 Msa0495320:intron 20.0%
!! TTTGATTGAGTTTATGAAAT+GGG + chr3_4:24455971-24455990 Msa0495320:intron 20.0%
!!! TTGTGAATTCTATATGATTT+TGG + chr3_4:24455998-24456017 Msa0495320:intron 20.0%
!!! TTTATGAAATGGGTTATTTT+GGG + chr3_4:24456026-24456045 Msa0495320:intron 20.0%
!! CAATTTACTCAAATTATTAC+CGG - chr3_4:24456141-24456160 None:intergenic 20.0%
!! TTTCTGTTGAAAATTTACTT+TGG - chr3_4:24456416-24456435 None:intergenic 20.0%
!! CAAATTATTCTTCTTCTATT+GGG - chr3_4:24456664-24456683 None:intergenic 20.0%
!! TTATGAATTCAAAAACAACT+CGG - chr3_4:24457285-24457304 None:intergenic 20.0%
!!! GTATTTTTAAGGTTATTCTA+AGG - chr3_4:24457511-24457530 None:intergenic 20.0%
!! TATGAAATGAAGAGATAATA+TGG - chr3_4:24457669-24457688 None:intergenic 20.0%
!!! TCACTTTTAATTTTTGTTTC+TGG + chr3_4:24457877-24457896 Msa0495320:intron 20.0%
!! TGTATATATATATGATGCTA+TGG - chr3_4:24458528-24458547 None:intergenic 20.0%
!! TAGGGTTTCTAAATTATTTA+AGG + chr3_4:24459096-24459115 Msa0495320:intron 20.0%
!!! AAAAACCATTTCAAACTTTT+TGG + chr3_4:24459637-24459656 Msa0495320:intron 20.0%
!! TTAAACCAAAAAGTTTGAAA+TGG - chr3_4:24459645-24459664 None:intergenic 20.0%
!! TTCATGTTAAAATAAATCTG+GGG - chr3_4:24459683-24459702 None:intergenic 20.0%
!!! TTTCATGATCTAATTTTACT+AGG - chr3_4:24460173-24460192 None:intergenic 20.0%
!!! TTATTTTATCAGATTGCATA+TGG + chr3_4:24460194-24460213 Msa0495320:three_prime_UTR 20.0%
!! TGATAGAAAATCATTGTAAA+TGG + chr3_4:24460230-24460249 Msa0495320:three_prime_UTR 20.0%
!! TTTTGGTAGAGTTTATGAAA+TGG + chr3_4:24456015-24456034 Msa0495320:intron 25.0%
! TTTGGTAGAGTTTATGAAAT+GGG + chr3_4:24456016-24456035 Msa0495320:intron 25.0%
!!! GTTTATGAAATGGGTTATTT+TGG + chr3_4:24456025-24456044 Msa0495320:intron 25.0%
!!! CAATTTGTTGGAGAATTATA+AGG - chr3_4:24456086-24456105 None:intergenic 25.0%
! ATATGTTACGAACAATTTGT+TGG - chr3_4:24456098-24456117 None:intergenic 25.0%
! AACAAATTGTTCGTAACATA+TGG + chr3_4:24456097-24456116 Msa0495320:intron 25.0%
! TATAATCACCTCACTTTATT+AGG + chr3_4:24456362-24456381 Msa0495320:intron 25.0%
! GCAAATTATTCTTCTTCTAT+TGG - chr3_4:24456665-24456684 None:intergenic 25.0%
!! ATAGAAGAAGAATAATTTGC+AGG + chr3_4:24456665-24456684 Msa0495320:intron 25.0%
!! TAGAAGAAGAATAATTTGCA+GGG + chr3_4:24456666-24456685 Msa0495320:intron 25.0%
! TAAATAGTGTATAAGAGAGA+GGG - chr3_4:24456993-24457012 None:intergenic 25.0%
! GGAAAAGAGAATATTTCAAA+GGG - chr3_4:24457051-24457070 None:intergenic 25.0%
! AGGAAAAGAGAATATTTCAA+AGG - chr3_4:24457052-24457071 None:intergenic 25.0%
!!! TCATAAACCTTTTAAAACCT+TGG + chr3_4:24457299-24457318 Msa0495320:intron 25.0%
! GATTTCATTTAAGAAGTTGA+AGG + chr3_4:24457719-24457738 Msa0495320:intron 25.0%
! AAATGAGGATAATGATTGTT+AGG + chr3_4:24457760-24457779 Msa0495320:intron 25.0%
! GATAATGATTGTTAGGAAAT+AGG + chr3_4:24457767-24457786 Msa0495320:intron 25.0%
!!! TGAGATTTTGAGTTTTATGT+CGG + chr3_4:24457957-24457976 Msa0495320:intron 25.0%
! GTTAATGTTTATTTCACAAG+TGG + chr3_4:24458123-24458142 Msa0495320:intron 25.0%
! CATACAAATGAGTCATTATT+AGG - chr3_4:24458228-24458247 None:intergenic 25.0%
!! ATTTGCGTATTTAACCATTT+TGG + chr3_4:24458377-24458396 Msa0495320:intron 25.0%
! CAAAGAATGAGATATTGTAA+TGG - chr3_4:24458418-24458437 None:intergenic 25.0%
! AATATCTCATTCTTTGAGTA+AGG + chr3_4:24458422-24458441 Msa0495320:intron 25.0%
! AATTTAAACAATGATACCAG+TGG + chr3_4:24458455-24458474 Msa0495320:intron 25.0%
! AGTGTATATATATGATGCTA+TGG - chr3_4:24458599-24458618 None:intergenic 25.0%
!! AATAACAAAACAAGTTGAAG+AGG + chr3_4:24458921-24458940 Msa0495320:intron 25.0%
! ACCCTACTAAAAATTAGAAT+AGG + chr3_4:24459077-24459096 Msa0495320:intron 25.0%
!!! CCCTATTCTAATTTTTAGTA+GGG - chr3_4:24459081-24459100 None:intergenic 25.0%
! CCCTACTAAAAATTAGAATA+GGG + chr3_4:24459078-24459097 Msa0495320:intron 25.0%
!!! ACCCTATTCTAATTTTTAGT+AGG - chr3_4:24459082-24459101 None:intergenic 25.0%
!!! TTTGGGTGTTTTTTGAGTTT+AGG + chr3_4:24455741-24455760 Msa0495320:five_prime_UTR 30.0%
!!! TGTTTTTTGAGTTTAGGCAA+TGG + chr3_4:24455747-24455766 Msa0495320:exon 30.0%
GTATCTTTGTCTCTCTAATT+AGG + chr3_4:24455926-24455945 Msa0495320:intron 30.0%
GTAACCAATTAAGTTTGTGT+TGG + chr3_4:24456173-24456192 Msa0495320:intron 30.0%
GATAGTAACCTAATAAAGTG+AGG - chr3_4:24456373-24456392 None:intergenic 30.0%
AAACACTTATGTGTATAGCA+AGG - chr3_4:24456491-24456510 None:intergenic 30.0%
ATAAGCAGATTCTTGTTAGA+AGG + chr3_4:24456534-24456553 Msa0495320:intron 30.0%
TAAGCAGATTCTTGTTAGAA+GGG + chr3_4:24456535-24456554 Msa0495320:intron 30.0%
ACTAATATTTCCCCATAAAG+TGG - chr3_4:24456593-24456612 None:intergenic 30.0%
! AGAAGAAGAATAATTTGCAG+GGG + chr3_4:24456667-24456686 Msa0495320:intron 30.0%
AATACCCTGTAAGTAAACAA+CGG + chr3_4:24456715-24456734 Msa0495320:intron 30.0%
AAATCCGTTGTTTACTTACA+GGG - chr3_4:24456722-24456741 None:intergenic 30.0%
GTAAATAGTGTATAAGAGAG+AGG - chr3_4:24456994-24457013 None:intergenic 30.0%
! GTTTTGTCTTCACTACTATT+AGG - chr3_4:24457191-24457210 None:intergenic 30.0%
GTAGTGAAGACAAAACTTAT+TGG + chr3_4:24457195-24457214 Msa0495320:intron 30.0%
TATTGTATCTGCTTTCTTCA+CGG - chr3_4:24457389-24457408 None:intergenic 30.0%
ATCCGTTATTGCTTAAATAG+CGG + chr3_4:24457459-24457478 Msa0495320:intron 30.0%
TTCCGCTATTTAAGCAATAA+CGG - chr3_4:24457464-24457483 None:intergenic 30.0%
AATGAAGAGATAATATGGAG+AGG - chr3_4:24457664-24457683 None:intergenic 30.0%
TTGACACTAGATAAAACTAC+CGG + chr3_4:24457814-24457833 Msa0495320:intron 30.0%
ATTAGTTGTGCTGAACTATT+TGG + chr3_4:24457839-24457858 Msa0495320:intron 30.0%
TACTTATATCAACCACTTTG+TGG + chr3_4:24458022-24458041 Msa0495320:intron 30.0%
CAAGACAGTGTGATTAATAA+CGG - chr3_4:24458091-24458110 None:intergenic 30.0%
TAAATGCTGCTAAAAGAACA+GGG - chr3_4:24458280-24458299 None:intergenic 30.0%
!! AGTATTGATTCTATGACTTG+TGG + chr3_4:24458299-24458318 Msa0495320:intron 30.0%
! GACTCTTGTCTTATTGTATT+TGG + chr3_4:24458338-24458357 Msa0495320:intron 30.0%
AATGGTTAAATACGCAAATG+TGG - chr3_4:24458376-24458395 None:intergenic 30.0%
ATGCTATGGAAAATATAGTG+GGG - chr3_4:24458514-24458533 None:intergenic 30.0%
GATGCTATGGAAAATATAGT+GGG - chr3_4:24458515-24458534 None:intergenic 30.0%
TGATGCTATGGAAAATATAG+TGG - chr3_4:24458516-24458535 None:intergenic 30.0%
GATGTACAACACTAATTTAG+AGG - chr3_4:24459035-24459054 None:intergenic 30.0%
! AGCCAGAAATTTTGAATTGT+GGG - chr3_4:24459154-24459173 None:intergenic 30.0%
!! AAATAGTCATCCTCTAGAAT+TGG + chr3_4:24459215-24459234 Msa0495320:intron 30.0%
ATGACTTAAACCAATTCTAG+AGG - chr3_4:24459228-24459247 None:intergenic 30.0%
TATATGTAGCATCAACACTT+TGG - chr3_4:24459396-24459415 None:intergenic 30.0%
! AACCCTTTTGCAATTATAGA+AGG + chr3_4:24459415-24459434 Msa0495320:intron 30.0%
! ACCCTTTTGCAATTATAGAA+GGG + chr3_4:24459416-24459435 Msa0495320:intron 30.0%
TCCCTTCTATAATTGCAAAA+GGG - chr3_4:24459420-24459439 None:intergenic 30.0%
TTCCCTTCTATAATTGCAAA+AGG - chr3_4:24459421-24459440 None:intergenic 30.0%
ATCAGTTACAGATCTATTGT+AGG + chr3_4:24459504-24459523 Msa0495320:intron 30.0%
TGCAGTGTTACAAGATATTA+CGG - chr3_4:24459574-24459593 None:intergenic 30.0%
TTCCTATTAAAACAATGCAG+TGG + chr3_4:24459730-24459749 Msa0495320:intron 30.0%
!!! AACCACTGCATTGTTTTAAT+AGG - chr3_4:24459735-24459754 None:intergenic 30.0%
!!! GGTTTTGAATGTTTTGATGT+AGG + chr3_4:24459751-24459770 Msa0495320:intron 30.0%
ATTCAGTTACAATCATCCAT+CGG + chr3_4:24459969-24459988 Msa0495320:CDS 30.0%
ATATATCAGATGCAGTATGT+TGG - chr3_4:24460042-24460061 None:intergenic 30.0%
!!! CTATACTGACTTTTGTTGTT+TGG + chr3_4:24460063-24460082 Msa0495320:three_prime_UTR 30.0%
CATGATTAACCTATCTAAGA+TGG - chr3_4:24460261-24460280 None:intergenic 30.0%
TATGAACACATGCAAATGAA+TGG + chr3_4:24460285-24460304 Msa0495320:three_prime_UTR 30.0%
TGTTAATCATGACCATACAT+GGG - chr3_4:24460342-24460361 None:intergenic 30.0%
!!! AACACTGATTTTGCGCTTAT+GGG - chr3_4:24455702-24455721 None:intergenic 35.0%
!!! TAACACTGATTTTGCGCTTA+TGG - chr3_4:24455703-24455722 None:intergenic 35.0%
!!! TTCGAGAAAGTGTGGTTTTT+TGG + chr3_4:24455723-24455742 Msa0495320:five_prime_UTR 35.0%
!!! TCGAGAAAGTGTGGTTTTTT+GGG + chr3_4:24455724-24455743 Msa0495320:five_prime_UTR 35.0%
!!! TTTTGAGTTTAGGCAATGGA+AGG + chr3_4:24455751-24455770 Msa0495320:exon 35.0%
AATGAAGCAGAAGATGATAG+TGG + chr3_4:24455774-24455793 Msa0495320:CDS 35.0%
ATTGATTGTGTTGTCGATGA+TGG + chr3_4:24455798-24455817 Msa0495320:CDS 35.0%
!!! GTGTTTGTTTTGAGTGTAAG+TGG + chr3_4:24455820-24455839 Msa0495320:CDS 35.0%
!!! TTGTTTTGAGTGTAAGTGGT+TGG + chr3_4:24455824-24455843 Msa0495320:CDS 35.0%
AGAGTTGTTTGTGATGTTTG+TGG + chr3_4:24455865-24455884 Msa0495320:CDS 35.0%
GCATCCAACACAAACTTAAT+TGG - chr3_4:24456180-24456199 None:intergenic 35.0%
ATGCCTTCAATATGAAGTGT+CGG + chr3_4:24456196-24456215 Msa0495320:intron 35.0%
CAAAAAGTAACACCGATACT+CGG + chr3_4:24456245-24456264 Msa0495320:intron 35.0%
ACACTTCAAAAACCGAGTAT+CGG - chr3_4:24456260-24456279 None:intergenic 35.0%
TTATGTTATTATGACGTCGC+TGG + chr3_4:24456295-24456314 Msa0495320:intron 35.0%
TGTTCTTGCAATCCACTTTA+TGG + chr3_4:24456578-24456597 Msa0495320:intron 35.0%
GTTCTTGCAATCCACTTTAT+GGG + chr3_4:24456579-24456598 Msa0495320:intron 35.0%
TTCTTGCAATCCACTTTATG+GGG + chr3_4:24456580-24456599 Msa0495320:intron 35.0%
CAGAATTGCTGCATTTGTAA+AGG - chr3_4:24456618-24456637 None:intergenic 35.0%
! GAAGAAGAATAATTTGCAGG+GGG + chr3_4:24456668-24456687 Msa0495320:intron 35.0%
! AAGAAGAATAATTTGCAGGG+GGG + chr3_4:24456669-24456688 Msa0495320:intron 35.0%
CAAATCCGTTGTTTACTTAC+AGG - chr3_4:24456723-24456742 None:intergenic 35.0%
! CTGTAAGTAAACAACGGATT+TGG + chr3_4:24456721-24456740 Msa0495320:intron 35.0%
ATTCACGTAGCTAGATACAT+CGG + chr3_4:24456769-24456788 Msa0495320:intron 35.0%
ACCATTCAATCTCAATCCAA+CGG - chr3_4:24456798-24456817 None:intergenic 35.0%
! GTAGGCATTGTTTGTGAATT+TGG - chr3_4:24456956-24456975 None:intergenic 35.0%
TTACACAAAATCCTTCCACT+TGG + chr3_4:24457010-24457029 Msa0495320:intron 35.0%
TACACAAAATCCTTCCACTT+GGG + chr3_4:24457011-24457030 Msa0495320:intron 35.0%
TGTTAGAGATCAGCAAATGA+AGG - chr3_4:24457072-24457091 None:intergenic 35.0%
ATGGAAACCAATTACTGAGA+GGG - chr3_4:24457153-24457172 None:intergenic 35.0%
TATGGAAACCAATTACTGAG+AGG - chr3_4:24457154-24457173 None:intergenic 35.0%
! CTCAGTAATTGGTTTCCATA+CGG + chr3_4:24457154-24457173 Msa0495320:intron 35.0%
TAACATACTCTCTAGCAAAC+AGG - chr3_4:24457226-24457245 None:intergenic 35.0%
!!! CACTGAACCAAGGTTTTAAA+AGG - chr3_4:24457309-24457328 None:intergenic 35.0%
TACTTAACAACACTGAACCA+AGG - chr3_4:24457319-24457338 None:intergenic 35.0%
! GTTCAGTGTTGTTAAGTAAC+CGG + chr3_4:24457321-24457340 Msa0495320:intron 35.0%
!! CAGCTCACATGGTATTTTTA+AGG - chr3_4:24457522-24457541 None:intergenic 35.0%
TAAAAACAGTTCAGCTCACA+TGG - chr3_4:24457533-24457552 None:intergenic 35.0%
ATATTGAGTCAGTGATGAGA+TGG + chr3_4:24457572-24457591 Msa0495320:intron 35.0%
TATTGAGTCAGTGATGAGAT+GGG + chr3_4:24457573-24457592 Msa0495320:intron 35.0%
! AATGTTTGTTTAGTGCTGAG+AGG - chr3_4:24457640-24457659 None:intergenic 35.0%
AGTTCAGCACAACTAATAAC+CGG - chr3_4:24457836-24457855 None:intergenic 35.0%
!! GTGTGATTAATAACGGATCA+CGG - chr3_4:24458084-24458103 None:intergenic 35.0%
CTAAATGCTGCTAAAAGAAC+AGG - chr3_4:24458281-24458300 None:intergenic 35.0%
ACTATGACTCATCACCAAAA+TGG - chr3_4:24458394-24458413 None:intergenic 35.0%
TTAAACAATGATACCAGTGG+CGG + chr3_4:24458458-24458477 Msa0495320:intron 35.0%
TGCTATGGAAAATATAGTGG+GGG - chr3_4:24458513-24458532 None:intergenic 35.0%
TTTAGAGGTCGATGTCAATT+TGG - chr3_4:24459020-24459039 None:intergenic 35.0%
! CCAGAAATTTTGAATTGTGG+GGG - chr3_4:24459152-24459171 None:intergenic 35.0%
! GCCAGAAATTTTGAATTGTG+GGG - chr3_4:24459153-24459172 None:intergenic 35.0%
! GAGCCAGAAATTTTGAATTG+TGG - chr3_4:24459155-24459174 None:intergenic 35.0%
! TTTGTTGTATCATTCAGTGG+CGG - chr3_4:24459177-24459196 None:intergenic 35.0%
! TCCTTTGTTGTATCATTCAG+TGG - chr3_4:24459180-24459199 None:intergenic 35.0%
! CTTTGGATTAAAGGTGTGTT+CGG - chr3_4:24459379-24459398 None:intergenic 35.0%
GCATCAACACTTTGGATTAA+AGG - chr3_4:24459388-24459407 None:intergenic 35.0%
TTGCAATTATAGAAGGGAAG+AGG + chr3_4:24459422-24459441 Msa0495320:intron 35.0%
GCAGTGTTACAAGATATTAC+GGG - chr3_4:24459573-24459592 None:intergenic 35.0%
ATAACAGCACAACAGTTAGA+GGG - chr3_4:24459598-24459617 None:intergenic 35.0%
! TAACTGTTGTGCTGTTATGA+AGG + chr3_4:24459600-24459619 Msa0495320:intron 35.0%
TGTTATGAAGGAAAAGAGGA+AGG + chr3_4:24459612-24459631 Msa0495320:intron 35.0%
! CTGATAATTTAGAACTTCGC+CGG - chr3_4:24459809-24459828 None:intergenic 35.0%
TTCAGTTACAATCATCCATC+GGG + chr3_4:24459970-24459989 Msa0495320:CDS 35.0%
!! ATTGACAGGTTGGTAAACAA+AGG - chr3_4:24460016-24460035 None:intergenic 35.0%
TATTCTTAACCACCCATGTA+TGG + chr3_4:24460327-24460346 Msa0495320:three_prime_UTR 35.0%
GTGTTAATCATGACCATACA+TGG - chr3_4:24460343-24460362 None:intergenic 35.0%
! CAGTGTTATTCGAGAAAGTG+TGG + chr3_4:24455715-24455734 Msa0495320:five_prime_UTR 40.0%
GTTTGTGGTGATTCTTCTCT+TGG + chr3_4:24455880-24455899 Msa0495320:CDS 40.0%
CCTTCAAGAACATGATCTTC+AGG - chr3_4:24455907-24455926 None:intergenic 40.0%
CCTGAAGATCATGTTCTTGA+AGG + chr3_4:24455904-24455923 Msa0495320:CDS 40.0%
TATTACCGGTGTTTACGTGT+CGG - chr3_4:24456127-24456146 None:intergenic 40.0%
ACACCGACACTTCATATTGA+AGG - chr3_4:24456202-24456221 None:intergenic 40.0%
!!! TCGGTTTTTGAAGTGTTAGC+TGG + chr3_4:24456264-24456283 Msa0495320:intron 40.0%
!!! CGGTTTTTGAAGTGTTAGCT+GGG + chr3_4:24456265-24456284 Msa0495320:intron 40.0%
! GTGGATTGCAAGAACATTAG+AGG - chr3_4:24456574-24456593 None:intergenic 40.0%
TTTGGATACCTTGCAATCAC+AGG + chr3_4:24456739-24456758 Msa0495320:intron 40.0%
TGTATCTAGCTACGTGAATG+TGG - chr3_4:24456768-24456787 None:intergenic 40.0%
GGATTGAGATTGAATGGTGT+AGG + chr3_4:24456800-24456819 Msa0495320:intron 40.0%
ATTCACTCACTCAGCTACAT+CGG - chr3_4:24456907-24456926 None:intergenic 40.0%
ACAATGCCTACCTCATCATT+CGG + chr3_4:24456965-24456984 Msa0495320:intron 40.0%
ACACAAAATCCTTCCACTTG+GGG + chr3_4:24457012-24457031 Msa0495320:intron 40.0%
TGAAAACAACTAACCCCAAG+TGG - chr3_4:24457028-24457047 None:intergenic 40.0%
TGAAACAGAGGGAATGTGAT+TGG - chr3_4:24457108-24457127 None:intergenic 40.0%
GATATGTAACAGCAGCATAG+CGG - chr3_4:24457352-24457371 None:intergenic 40.0%
GCTATGCTGCTGTTACATAT+CGG + chr3_4:24457351-24457370 Msa0495320:intron 40.0%
CTATGCTGCTGTTACATATC+GGG + chr3_4:24457352-24457371 Msa0495320:intron 40.0%
TGCTGTTACATATCGGGATT+TGG + chr3_4:24457358-24457377 Msa0495320:intron 40.0%
ATTGAGTCAGTGATGAGATG+GGG + chr3_4:24457574-24457593 Msa0495320:intron 40.0%
CCTCAGAATCAATGTCTTGA+AGG - chr3_4:24457700-24457719 None:intergenic 40.0%
!! CCTTCAAGACATTGATTCTG+AGG + chr3_4:24457697-24457716 Msa0495320:intron 40.0%
! ATCCTCATTTTGCGATAGTG+AGG - chr3_4:24457750-24457769 None:intergenic 40.0%
! AAATAGCGGAAACCACAAAG+TGG - chr3_4:24458037-24458056 None:intergenic 40.0%
! TAACGGATCACGGAAAATAG+CGG - chr3_4:24458074-24458093 None:intergenic 40.0%
GCATTGAGACATTGCATCAA+AGG - chr3_4:24458251-24458270 None:intergenic 40.0%
AGCCACGTATATGTCTTTGT+GGG + chr3_4:24458481-24458500 Msa0495320:intron 40.0%
CCCCCACAATTCAAAATTTC+TGG + chr3_4:24459149-24459168 Msa0495320:intron 40.0%
GCCACTGAATGATACAACAA+AGG + chr3_4:24459176-24459195 Msa0495320:intron 40.0%
CAACAAAGGACAAGTGAATG+TGG + chr3_4:24459190-24459209 Msa0495320:intron 40.0%
!! TGAAGCATTGACATAGACAC+AGG + chr3_4:24459249-24459268 Msa0495320:intron 40.0%
TGTAACCACATGTGTTGTGT+TGG + chr3_4:24459327-24459346 Msa0495320:intron 40.0%
TGTTTGACACGTGTTAGAGT+CGG - chr3_4:24459356-24459375 None:intergenic 40.0%
TGTATAGCTGTTGCTGTAGT+GGG + chr3_4:24459464-24459483 Msa0495320:intron 40.0%
TAACTGATCCAACCCTTCAT+AGG - chr3_4:24459492-24459511 None:intergenic 40.0%
CATAACAGCACAACAGTTAG+AGG - chr3_4:24459599-24459618 None:intergenic 40.0%
! GTGCTGTTATGAAGGAAAAG+AGG + chr3_4:24459608-24459627 Msa0495320:intron 40.0%
GTTCTTTGCATAACCAAGTC+CGG + chr3_4:24459787-24459806 Msa0495320:CDS 40.0%
!! CGGCGAAGTTCTAAATTATC+AGG + chr3_4:24459807-24459826 Msa0495320:CDS 40.0%
TCAGGCATTTACAGATGCTA+AGG + chr3_4:24459825-24459844 Msa0495320:CDS 40.0%
CAGGCATTTACAGATGCTAA+GGG + chr3_4:24459826-24459845 Msa0495320:CDS 40.0%
AGGCATTTACAGATGCTAAG+GGG + chr3_4:24459827-24459846 Msa0495320:CDS 40.0%
TGCTCATGGAAACTACTGAT+TGG - chr3_4:24459913-24459932 None:intergenic 40.0%
TCAGTTACAATCATCCATCG+GGG + chr3_4:24459971-24459990 Msa0495320:CDS 40.0%
ATGTTGGAACATTGACAGGT+TGG - chr3_4:24460026-24460045 None:intergenic 40.0%
CAGTATGTTGGAACATTGAC+AGG - chr3_4:24460030-24460049 None:intergenic 40.0%
ATGGCATTGCCATCTTAGAT+AGG + chr3_4:24460249-24460268 Msa0495320:three_prime_UTR 40.0%
TAATCATGACCATACATGGG+TGG - chr3_4:24460339-24460358 None:intergenic 40.0%
TTGAGTGTAAGTGGTTGGAC+TGG + chr3_4:24455829-24455848 Msa0495320:CDS 45.0%
GAATACCGACACGTAAACAC+CGG + chr3_4:24456119-24456138 Msa0495320:intron 45.0%
CAAATGCAGCAATTCTGCAG+AGG + chr3_4:24456621-24456640 Msa0495320:intron 45.0%
! GGGAGAGTACAGAATCTAGA+AGG + chr3_4:24456689-24456708 Msa0495320:intron 45.0%
TGTGGAAACCTGTGATTGCA+AGG - chr3_4:24456750-24456769 None:intergenic 45.0%
GCCGTTGGATTGAGATTGAA+TGG + chr3_4:24456794-24456813 Msa0495320:intron 45.0%
TGTAGCTGAGTGAGTGAATG+CGG + chr3_4:24456908-24456927 Msa0495320:intron 45.0%
AACAACTAACCCCAAGTGGA+AGG - chr3_4:24457024-24457043 None:intergenic 45.0%
GACAAGACAGCTGAAACAGA+GGG - chr3_4:24457119-24457138 None:intergenic 45.0%
CACTGCTATTGCAGTGATAG+CGG - chr3_4:24457420-24457439 None:intergenic 45.0%
TGCCTCACTATCGCAAAATG+AGG + chr3_4:24457745-24457764 Msa0495320:intron 45.0%
!! AAAATAGCGGATAGCGTAGC+GGG - chr3_4:24458061-24458080 None:intergenic 45.0%
!! GAAAATAGCGGATAGCGTAG+CGG - chr3_4:24458062-24458081 None:intergenic 45.0%
GAGCCACGTATATGTCTTTG+TGG + chr3_4:24458480-24458499 Msa0495320:intron 45.0%
AGCCCACAAAGACATATACG+TGG - chr3_4:24458486-24458505 None:intergenic 45.0%
TTATAGAAGGGAAGAGGCAG+CGG + chr3_4:24459428-24459447 Msa0495320:intron 45.0%
AGCAACAGCTATACAGTACC+AGG - chr3_4:24459459-24459478 None:intergenic 45.0%
CTGTATAGCTGTTGCTGTAG+TGG + chr3_4:24459463-24459482 Msa0495320:intron 45.0%
! CTGTAGTGGGATCCTATGAA+GGG + chr3_4:24459477-24459496 Msa0495320:intron 45.0%
! ATTTAGAACTTCGCCGGACT+TGG - chr3_4:24459803-24459822 None:intergenic 45.0%
AATGCCTGAGAGTGATCGTT+GGG + chr3_4:24459870-24459889 Msa0495320:CDS 45.0%
CTCAGTGATTCAGCGAGTGT+CGG + chr3_4:24455651-24455670 Msa0495320:five_prime_UTR 50.0%
!! GGTTGGACTGGTGAAATTCG+TGG + chr3_4:24455841-24455860 Msa0495320:CDS 50.0%
CTAGATACATCGGTAGCCGT+TGG + chr3_4:24456779-24456798 Msa0495320:intron 50.0%
!! GGTGAGTGTTGGATCGAGAT+TGG - chr3_4:24456886-24456905 None:intergenic 50.0%
TCAGCTACATCGGTGAGTGT+TGG - chr3_4:24456897-24456916 None:intergenic 50.0%
GTAGCTGAGTGAGTGAATGC+GGG + chr3_4:24456909-24456928 Msa0495320:intron 50.0%
TTTGGATTCCCTGCAGTTGC+AGG - chr3_4:24456938-24456957 None:intergenic 50.0%
GGACAAGACAGCTGAAACAG+AGG - chr3_4:24457120-24457139 None:intergenic 50.0%
TCAGCTGTCTTGTCCTTGTG+TGG + chr3_4:24457125-24457144 Msa0495320:intron 50.0%
CAGCTGTCTTGTCCTTGTGT+GGG + chr3_4:24457126-24457145 Msa0495320:intron 50.0%
TGTGGGACCCTCTCAGTAAT+TGG + chr3_4:24457143-24457162 Msa0495320:intron 50.0%
TGGTTTCCATACGGTCGTTC+AGG + chr3_4:24457163-24457182 Msa0495320:intron 50.0%
TACCTAGCTCGTGGGGTTTA+GGG - chr3_4:24457616-24457635 None:intergenic 50.0%
TTACCTAGCTCGTGGGGTTT+AGG - chr3_4:24457617-24457636 None:intergenic 50.0%
TGAGAGGTTACCTAGCTCGT+GGG - chr3_4:24457624-24457643 None:intergenic 50.0%
!! ATAGCGTAGCGGGCAAATAG+CGG - chr3_4:24458051-24458070 None:intergenic 50.0%
GGACACCAACACAACACATG+TGG - chr3_4:24459335-24459354 None:intergenic 50.0%
TATAGAAGGGAAGAGGCAGC+GGG + chr3_4:24459429-24459448 Msa0495320:intron 50.0%
! GCTGTAGTGGGATCCTATGA+AGG + chr3_4:24459476-24459495 Msa0495320:intron 50.0%
AGTGGGATCCTATGAAGGGT+TGG + chr3_4:24459481-24459500 Msa0495320:intron 50.0%
CAATGCCTGAGAGTGATCGT+TGG + chr3_4:24459869-24459888 Msa0495320:CDS 50.0%
!! TCGTCTTGGTGGTGGTAGTT+CGG + chr3_4:24459939-24459958 Msa0495320:CDS 50.0%
ACAGCATGTGAATACCCCGA+TGG - chr3_4:24459988-24460007 None:intergenic 50.0%
!! AGTGATTCAGCGAGTGTCGG+TGG + chr3_4:24455654-24455673 Msa0495320:five_prime_UTR 55.0%
AGGGAGCCGAATGATGAGGT+AGG - chr3_4:24456974-24456993 None:intergenic 55.0%
AGAGAGGGAGCCGAATGATG+AGG - chr3_4:24456978-24456997 None:intergenic 55.0%
TACTGAGAGGGTCCCACACA+AGG - chr3_4:24457141-24457160 None:intergenic 55.0%
TAGGCACCTGAACGACCGTA+TGG - chr3_4:24457172-24457191 None:intergenic 55.0%
ACCTAGCTCGTGGGGTTTAG+GGG - chr3_4:24457615-24457634 None:intergenic 55.0%
GAGAGGTTACCTAGCTCGTG+GGG - chr3_4:24457623-24457642 None:intergenic 55.0%
CTGAGAGGTTACCTAGCTCG+TGG - chr3_4:24457625-24457644 None:intergenic 55.0%
ATAGAAGGGAAGAGGCAGCG+GGG + chr3_4:24459430-24459449 Msa0495320:intron 55.0%
GCATCCCAACGATCACTCTC+AGG - chr3_4:24459877-24459896 None:intergenic 55.0%
CAAGACGAGTGCAGTGCTCA+TGG - chr3_4:24459927-24459946 None:intergenic 55.0%
! CATGAGCACTGCACTCGTCT+TGG + chr3_4:24459925-24459944 Msa0495320:CDS 55.0%
!! CGTCTTGGTGGTGGTAGTTC+GGG + chr3_4:24459940-24459959 Msa0495320:CDS 55.0%
!! GTCTTGGTGGTGGTAGTTCG+GGG + chr3_4:24459941-24459960 Msa0495320:CDS 55.0%
TGCGGGAAACCTGCAACTGC+AGG + chr3_4:24456926-24456945 Msa0495320:intron 60.0%
GCGGGAAACCTGCAACTGCA+GGG + chr3_4:24456927-24456946 Msa0495320:intron 60.0%
!! CAGCAGCATAGCGGTGCTAC+CGG - chr3_4:24457343-24457362 None:intergenic 60.0%
ACCCCTAAACCCCACGAGCT+AGG + chr3_4:24457611-24457630 Msa0495320:intron 60.0%
CATATACGTGGCTCCGCCAC+TGG - chr3_4:24458474-24458493 None:intergenic 60.0%
TAGAAGGGAAGAGGCAGCGG+GGG + chr3_4:24459431-24459450 Msa0495320:intron 60.0%
! GAGCACTGCACTCGTCTTGG+TGG + chr3_4:24459928-24459947 Msa0495320:CDS 60.0%
CACTGCACTCGTCTTGGTGG+TGG + chr3_4:24459931-24459950 Msa0495320:CDS 60.0%
GAAGAGGCAGCGGGGGAACC+TGG + chr3_4:24459438-24459457 Msa0495320:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 24455625 24460385 24455625 ID=Msa0495320;Name=Msa0495320
chr3_4 mRNA 24455625 24460385 24455625 ID=Msa0495320-mRNA-1;Parent=Msa0495320;Name=Msa0495320-mRNA-1;_AED=0.21;_eAED=0.21;_QI=141|1|1|1|1|1|2|329|147
chr3_4 exon 24455625 24455925 24455625 ID=Msa0495320-mRNA-1:exon:5926;Parent=Msa0495320-mRNA-1
chr3_4 exon 24459773 24460385 24459773 ID=Msa0495320-mRNA-1:exon:5927;Parent=Msa0495320-mRNA-1
chr3_4 five_prime_UTR 24455625 24455765 24455625 ID=Msa0495320-mRNA-1:five_prime_utr;Parent=Msa0495320-mRNA-1
chr3_4 CDS 24455766 24455925 24455766 ID=Msa0495320-mRNA-1:cds;Parent=Msa0495320-mRNA-1
chr3_4 CDS 24459773 24460056 24459773 ID=Msa0495320-mRNA-1:cds;Parent=Msa0495320-mRNA-1
chr3_4 three_prime_UTR 24460057 24460385 24460057 ID=Msa0495320-mRNA-1:three_prime_utr;Parent=Msa0495320-mRNA-1
Gene Sequence

>Msa0495320

ATGGAAGGAATGAAGCAGAAGATGATAGTGGAATTGATTGTGTTGTCGATGATGGTGTTTGTTTTGAGTGTAAGTGGTTGGACTGGTGAAATTCGTGGAAGAGTTGTTTGTGATGTTTGTGGTGATTCTTCTCTTGGTCCTGAAGATCATGTTCTTGAAGGTGCTGAAGTTGCTGTTCTTTGCATAACCAAGTCCGGCGAAGTTCTAAATTATCAGGCATTTACAGATGCTAAGGGGATATACACAGTAGCTGAGACAATGCCTGAGAGTGATCGTTGGGATGCATGTCTTGCTCGACCAATCAGTAGTTTCCATGAGCACTGCACTCGTCTTGGTGGTGGTAGTTCGGGGATTAAATTCAGTTACAATCATCCATCGGGGTATTCACATGCTGTCAGAACCTTTGTTTACCAACCTGTCAATGTTCCAACATACTGCATCTGA

Protein sequence

>Msa0495320

MEGMKQKMIVELIVLSMMVFVLSVSGWTGEIRGRVVCDVCGDSSLGPEDHVLEGAEVAVLCITKSGEVLNYQAFTDAKGIYTVAETMPESDRWDACLARPISSFHEHCTRLGGGSSGIKFSYNHPSGYSHAVRTFVYQPVNVPTYCI*