Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772260 | XP_003612068.1 | 74.603 | 315 | 50 | 2 | 1 | 285 | 67 | 381 | 1.07e-163 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772260 | sp|Q9SPV4|SAMT_CLABR | 54.459 | 314 | 99 | 6 | 1 | 284 | 58 | 357 | 6.56e-111 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772260 | B7FIK3 | 74.603 | 315 | 50 | 2 | 1 | 285 | 67 | 381 | 5.12e-164 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0761930 | Msa0772260 | 0.812659 | 3.792494e-51 | -8.615850e-47 |
| Msa0772260 | Msa0840450 | 0.805011 | 1.639980e-49 | -8.615850e-47 |
| Msa0772260 | Msa0978290 | 0.807315 | 5.367226e-50 | -8.615850e-47 |
| Msa0772260 | Msa1229880 | 0.821719 | 3.475984e-53 | -8.615850e-47 |
| Msa0772260 | Msa1279240 | 0.801909 | 7.208744e-49 | -8.615850e-47 |
| Msa0772260 | Msa1310620 | 0.803203 | 3.899406e-49 | -8.615850e-47 |
| Msa0772260 | Msa1368800 | 0.802599 | 5.197532e-49 | -8.615850e-47 |
| Msa0772260 | Msa1407860 | 0.891071 | 5.551216e-74 | -8.615850e-47 |
| Msa0772260 | Msa1466170 | 0.807571 | 4.736606e-50 | -8.615850e-47 |
| Msa0206600 | Msa0772260 | 0.807976 | 3.884963e-50 | -8.615850e-47 |
| Msa0224980 | Msa0772260 | 0.801284 | 9.681906e-49 | -8.615850e-47 |
| Msa0225030 | Msa0772260 | 0.809370 | 1.956743e-50 | -8.615850e-47 |
| Msa0238530 | Msa0772260 | 0.804231 | 2.385149e-49 | -8.615850e-47 |
| Msa0431310 | Msa0772260 | 0.813993 | 1.931356e-51 | -8.615850e-47 |
| Msa0459920 | Msa0772260 | 0.814131 | 1.800964e-51 | -8.615850e-47 |
| Msa0246470 | Msa0772260 | 0.802719 | 4.910074e-49 | -8.615850e-47 |
| Msa0323790 | Msa0772260 | 0.806230 | 9.099245e-50 | -8.615850e-47 |
| Msa0484890 | Msa0772260 | 0.827399 | 1.598317e-54 | -8.615850e-47 |
| Msa0508770 | Msa0772260 | 0.808820 | 2.566885e-50 | -8.615850e-47 |
| Msa0521190 | Msa0772260 | 0.806418 | 8.304365e-50 | -8.615850e-47 |
| Msa0562680 | Msa0772260 | 0.802049 | 6.746714e-49 | -8.615850e-47 |
| Msa0568810 | Msa0772260 | 0.802809 | 4.704583e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772260 | MtrunA17_Chr5g0404631 | 74.603 | 315 | 50 | 2 | 1 | 285 | 67 | 381 | 9.85e-168 | 470 |
| Msa0772260 | MtrunA17_Chr8g0372821 | 65.385 | 312 | 79 | 1 | 1 | 283 | 57 | 368 | 2.71e-147 | 417 |
| Msa0772260 | MtrunA17_Chr3g0107591 | 60.703 | 313 | 94 | 1 | 1 | 284 | 56 | 368 | 2.06e-135 | 387 |
| Msa0772260 | MtrunA17_Chr4g0008111 | 58.917 | 314 | 89 | 2 | 1 | 285 | 57 | 359 | 3.39e-131 | 376 |
| Msa0772260 | MtrunA17_Chr8g0372671 | 58.466 | 313 | 93 | 2 | 1 | 284 | 57 | 361 | 1.38e-128 | 370 |
| Msa0772260 | MtrunA17_Chr6g0475241 | 55.911 | 313 | 95 | 2 | 1 | 284 | 58 | 356 | 8.94e-115 | 335 |
| Msa0772260 | MtrunA17_Chr8g0343981 | 54.603 | 315 | 99 | 5 | 1 | 285 | 57 | 357 | 3.61e-109 | 320 |
| Msa0772260 | MtrunA17_Chr8g0343971 | 53.185 | 314 | 106 | 3 | 1 | 284 | 57 | 359 | 8.63e-109 | 320 |
| Msa0772260 | MtrunA17_Chr6g0475221 | 53.355 | 313 | 101 | 4 | 1 | 284 | 57 | 353 | 8.77e-107 | 314 |
| Msa0772260 | MtrunA17_Chr3g0107871 | 40.379 | 317 | 144 | 6 | 1 | 283 | 35 | 340 | 5.37e-72 | 225 |
| Msa0772260 | MtrunA17_Chr3g0144871 | 36.875 | 320 | 160 | 3 | 1 | 285 | 57 | 369 | 1.97e-66 | 211 |
| Msa0772260 | MtrunA17_Chr7g0252361 | 34.069 | 317 | 166 | 5 | 1 | 283 | 56 | 363 | 2.57e-58 | 191 |
| Msa0772260 | MtrunA17_Chr1g0155451 | 44.643 | 224 | 105 | 4 | 71 | 284 | 2 | 216 | 5.27e-58 | 185 |
| Msa0772260 | MtrunA17_Chr5g0419851 | 34.277 | 318 | 160 | 3 | 1 | 283 | 117 | 420 | 6.97e-58 | 191 |
| Msa0772260 | MtrunA17_Chr7g0252501 | 39.801 | 201 | 111 | 3 | 83 | 283 | 38 | 228 | 5.03e-46 | 154 |
| Msa0772260 | MtrunA17_Chr8g0372801 | 49.231 | 130 | 37 | 1 | 34 | 134 | 31 | 160 | 2.15e-36 | 128 |
| Msa0772260 | MtrunA17_Chr3g0100101 | 29.085 | 306 | 158 | 6 | 1 | 261 | 66 | 357 | 2.94e-30 | 117 |
| Msa0772260 | MtrunA17_Chr1g0208641 | 30.903 | 288 | 152 | 8 | 1 | 261 | 73 | 340 | 7.42e-29 | 113 |
| Msa0772260 | MtrunA17_Chr5g0444921 | 27.744 | 328 | 177 | 8 | 1 | 282 | 76 | 389 | 1.99e-27 | 109 |
| Msa0772260 | MtrunA17_Chr1g0155471 | 40.800 | 125 | 64 | 4 | 161 | 284 | 9 | 124 | 2.08e-23 | 92.8 |
| Msa0772260 | MtrunA17_Chr1g0155481 | 56.410 | 78 | 34 | 0 | 83 | 160 | 22 | 99 | 7.92e-23 | 92.0 |
| Msa0772260 | MtrunA17_Chr6g0455081 | 33.803 | 142 | 81 | 2 | 143 | 284 | 2 | 130 | 4.30e-19 | 81.6 |
| Msa0772260 | MtrunA17_Chr3g0099271 | 31.905 | 210 | 117 | 7 | 83 | 282 | 15 | 208 | 8.32e-19 | 82.8 |
| Msa0772260 | MtrunA17_Chr6g0455071 | 42.529 | 87 | 45 | 2 | 83 | 169 | 48 | 129 | 3.12e-17 | 76.3 |
| Msa0772260 | MtrunA17_Chr1g0155461 | 44.048 | 84 | 40 | 2 | 1 | 77 | 60 | 143 | 3.69e-14 | 69.7 |
| Msa0772260 | MtrunA17_Chr1g0155491 | 44.048 | 84 | 40 | 2 | 1 | 77 | 60 | 143 | 1.97e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772260 | AT1G19640.1 | 39.640 | 333 | 148 | 6 | 1 | 283 | 58 | 387 | 6.10e-69 | 219 |
| Msa0772260 | AT3G11480.1 | 36.624 | 314 | 155 | 4 | 1 | 284 | 80 | 379 | 4.76e-66 | 211 |
| Msa0772260 | AT5G04380.2 | 34.076 | 314 | 166 | 4 | 1 | 284 | 16 | 318 | 3.87e-61 | 197 |
| Msa0772260 | AT5G04370.1 | 35.484 | 310 | 165 | 4 | 1 | 284 | 90 | 390 | 2.89e-60 | 197 |
| Msa0772260 | AT5G04380.3 | 34.076 | 314 | 166 | 4 | 1 | 284 | 87 | 389 | 3.38e-60 | 196 |
| Msa0772260 | AT5G04370.3 | 35.484 | 310 | 165 | 4 | 1 | 284 | 95 | 395 | 3.80e-60 | 196 |
| Msa0772260 | AT5G04370.2 | 35.484 | 310 | 165 | 4 | 1 | 284 | 109 | 409 | 4.77e-60 | 197 |
| Msa0772260 | AT4G36470.1 | 36.842 | 323 | 155 | 5 | 1 | 285 | 60 | 371 | 3.93e-59 | 193 |
| Msa0772260 | AT5G38020.2 | 36.335 | 322 | 159 | 5 | 1 | 284 | 16 | 329 | 8.25e-59 | 191 |
| Msa0772260 | AT5G38020.1 | 36.335 | 322 | 159 | 5 | 1 | 284 | 55 | 368 | 2.39e-58 | 191 |
| Msa0772260 | AT3G21950.1 | 34.700 | 317 | 171 | 4 | 1 | 284 | 55 | 368 | 2.13e-57 | 189 |
| Msa0772260 | AT5G66430.1 | 33.010 | 309 | 178 | 4 | 1 | 284 | 50 | 354 | 2.16e-57 | 188 |
| Msa0772260 | AT5G04380.1 | 33.758 | 314 | 160 | 5 | 1 | 284 | 83 | 378 | 3.93e-56 | 186 |
| Msa0772260 | AT2G14060.1 | 36.306 | 314 | 166 | 6 | 1 | 284 | 63 | 372 | 2.57e-55 | 183 |
| Msa0772260 | AT3G21950.2 | 31.232 | 349 | 172 | 5 | 1 | 284 | 55 | 400 | 7.98e-51 | 172 |
| Msa0772260 | AT1G68040.1 | 31.210 | 314 | 170 | 7 | 1 | 289 | 66 | 358 | 1.98e-41 | 147 |
| Msa0772260 | AT2G14060.2 | 36.994 | 173 | 83 | 2 | 1 | 147 | 63 | 235 | 2.57e-32 | 120 |
| Msa0772260 | AT1G15125.1 | 31.271 | 291 | 157 | 10 | 1 | 264 | 51 | 325 | 3.42e-32 | 122 |
| Msa0772260 | AT5G38100.3 | 31.650 | 297 | 154 | 8 | 1 | 266 | 38 | 316 | 1.87e-31 | 120 |
| Msa0772260 | AT5G38100.1 | 31.650 | 297 | 154 | 8 | 1 | 266 | 61 | 339 | 1.91e-31 | 120 |
| Msa0772260 | AT5G55250.2 | 27.692 | 325 | 181 | 8 | 1 | 282 | 33 | 346 | 2.55e-28 | 112 |
| Msa0772260 | AT5G55250.1 | 27.692 | 325 | 181 | 8 | 1 | 282 | 71 | 384 | 7.24e-28 | 111 |
| Msa0772260 | AT5G38780.2 | 27.365 | 296 | 165 | 8 | 1 | 264 | 13 | 290 | 9.89e-27 | 107 |
| Msa0772260 | AT5G56300.1 | 27.483 | 302 | 163 | 10 | 1 | 259 | 72 | 360 | 1.79e-26 | 107 |
| Msa0772260 | AT5G38780.1 | 27.365 | 296 | 165 | 8 | 1 | 264 | 62 | 339 | 2.10e-26 | 107 |
| Msa0772260 | AT5G37970.1 | 27.726 | 321 | 173 | 10 | 1 | 284 | 64 | 362 | 6.04e-25 | 102 |
| Msa0772260 | AT5G37990.1 | 28.231 | 294 | 162 | 9 | 1 | 263 | 64 | 339 | 1.13e-23 | 99.4 |
| Msa0772260 | AT4G26420.1 | 28.477 | 302 | 162 | 11 | 1 | 260 | 62 | 351 | 1.86e-21 | 93.6 |
| Msa0772260 | AT1G66720.1 | 29.956 | 227 | 129 | 7 | 1 | 199 | 58 | 282 | 1.07e-19 | 88.2 |
| Msa0772260 | AT3G44860.1 | 29.730 | 222 | 133 | 5 | 1 | 199 | 56 | 277 | 1.66e-19 | 87.4 |
| Msa0772260 | AT3G44870.1 | 30.180 | 222 | 129 | 6 | 1 | 199 | 56 | 274 | 6.97e-19 | 86.3 |
| Msa0772260 | AT1G66700.1 | 27.039 | 233 | 128 | 6 | 1 | 199 | 58 | 282 | 2.22e-17 | 81.6 |
| Msa0772260 | AT1G15125.2 | 29.412 | 187 | 104 | 7 | 1 | 160 | 51 | 236 | 1.72e-14 | 72.0 |
| Msa0772260 | AT5G38100.2 | 35.032 | 157 | 74 | 5 | 1 | 129 | 61 | 217 | 2.56e-14 | 71.6 |
| Msa0772260 | AT5G38100.4 | 35.032 | 157 | 74 | 5 | 1 | 129 | 61 | 217 | 2.68e-14 | 71.6 |
| Msa0772260 | AT1G66690.1 | 24.483 | 290 | 161 | 7 | 1 | 256 | 58 | 323 | 2.46e-13 | 69.7 |
Find 52 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGACTTGGGTTGCTCTTC+TGG | 0.124180 | 5_2:+46560013 | None:intergenic |
| GCAAAGAGTGCTGCTATATT+TGG | 0.180266 | 5_2:+46563358 | Msa0772260:CDS |
| ATAAGCTTTGAGCACATTTA+TGG | 0.195508 | 5_2:-46563220 | None:intergenic |
| TTCATGAACACTTGGTATTC+TGG | 0.218070 | 5_2:-46560112 | None:intergenic |
| TTTAGCTAGTCGAATGTCTA+AGG | 0.315844 | 5_2:+46564931 | Msa0772260:CDS |
| CTCATCAGAAGTAGAATTAG+AGG | 0.323644 | 5_2:+46564682 | Msa0772260:CDS |
| TTATTGTTCTCTACATCATT+AGG | 0.334453 | 5_2:-46563168 | None:intergenic |
| TAATGATGTAGAGAACAATA+AGG | 0.377738 | 5_2:+46563170 | Msa0772260:CDS |
| GATATCACAAATAAAGTGTT+TGG | 0.380662 | 5_2:-46560037 | None:intergenic |
| TGCTCTTAACGACATGGTCT+TGG | 0.380911 | 5_2:+46563395 | Msa0772260:CDS |
| TTGCCTGAGTCGCGCATTGA+TGG | 0.383305 | 5_2:+46564803 | Msa0772260:CDS |
| CAAAGAGTGCTGCTATATTT+GGG | 0.393058 | 5_2:+46563359 | Msa0772260:CDS |
| TAAGCTTTGAGCACATTTAT+GGG | 0.393290 | 5_2:-46563219 | None:intergenic |
| GGCTGTGGTTGAACCTTTGT+TGG | 0.404394 | 5_2:+46564853 | Msa0772260:CDS |
| CCTTTGTTGGTCAGTCACTT+TGG | 0.420436 | 5_2:+46564866 | Msa0772260:CDS |
| ATTGGAATGCTTACGATGAT+TGG | 0.424472 | 5_2:+46564756 | Msa0772260:CDS |
| GTGTTCATGAATGATCTTCC+TGG | 0.435426 | 5_2:+46560124 | Msa0772260:CDS |
| ACCCCTTTCAACAAGCTCTT+CGG | 0.454641 | 5_2:-46563289 | None:intergenic |
| GATTGGAATGATATTGATGT+TGG | 0.456232 | 5_2:+46564773 | Msa0772260:CDS |
| GGTCCTTTAGGGAATCATAA+TGG | 0.458040 | 5_2:+46564616 | Msa0772260:intron |
| TGCCGAAGAGCTTGTTGAAA+GGG | 0.469328 | 5_2:+46563287 | Msa0772260:CDS |
| AATCATAATGGAGGAGCAAA+TGG | 0.479030 | 5_2:+46564628 | Msa0772260:CDS |
| TAGAAGTAACAGAAATGCAT+TGG | 0.491226 | 5_2:+46564738 | Msa0772260:CDS |
| AATGATGTAGAGAACAATAA+GGG | 0.498989 | 5_2:+46563171 | Msa0772260:CDS |
| TCTTAACGACATGGTCTTGG+AGG | 0.519014 | 5_2:+46563398 | Msa0772260:CDS |
| GCTCCATCAATGCGCGACTC+AGG | 0.520496 | 5_2:-46564806 | None:intergenic |
| AGAGAAACTAAATGATGAAG+TGG | 0.525919 | 5_2:+46560189 | Msa0772260:CDS |
| CAATAAGGGTAATATTTACA+TGG | 0.533461 | 5_2:+46563185 | Msa0772260:CDS |
| GATGAAGTGGAAGGTGGGAT+TGG | 0.536438 | 5_2:+46560202 | Msa0772260:CDS |
| TGCTATTGCTCTTAACGACA+TGG | 0.540305 | 5_2:+46563389 | Msa0772260:CDS |
| TAAATGATGAAGTGGAAGGT+GGG | 0.543127 | 5_2:+46560197 | Msa0772260:CDS |
| CTTGGTATTCTGGAGACTCA+TGG | 0.549163 | 5_2:-46560102 | None:intergenic |
| CTAAATGATGAAGTGGAAGG+TGG | 0.560920 | 5_2:+46560196 | Msa0772260:CDS |
| GTGCCGAAGAGCTTGTTGAA+AGG | 0.564001 | 5_2:+46563286 | Msa0772260:CDS |
| TGGAGAAGCTATCATTGAAG+AGG | 0.570876 | 5_2:+46564886 | Msa0772260:CDS |
| AATTCTACTTCTGATGAGGA+TGG | 0.577914 | 5_2:-46564677 | None:intergenic |
| CTCTAATTCTACTTCTGATG+AGG | 0.589922 | 5_2:-46564681 | None:intergenic |
| CCAAAGTGACTGACCAACAA+AGG | 0.591313 | 5_2:-46564866 | None:intergenic |
| GATGAGGATGGTGTGTATTG+AGG | 0.592884 | 5_2:-46564665 | None:intergenic |
| TGCAAAATGCATGAGGGCTG+TGG | 0.598009 | 5_2:+46564838 | Msa0772260:CDS |
| AAGCTTTGAGCACATTTATG+GGG | 0.600673 | 5_2:-46563218 | None:intergenic |
| GGCACCCCATTGATAAAACA+TGG | 0.602861 | 5_2:-46560226 | None:intergenic |
| AAACTAAATGATGAAGTGGA+AGG | 0.604990 | 5_2:+46560193 | Msa0772260:CDS |
| GAAGATCATTCATGAACACT+TGG | 0.615429 | 5_2:-46560120 | None:intergenic |
| GCCGAAGAGCTTGTTGAAAG+GGG | 0.619904 | 5_2:+46563288 | Msa0772260:CDS |
| ATCTGAAGTTATCAAAACAG+TGG | 0.626634 | 5_2:+46560057 | Msa0772260:CDS |
| ATGTTATTGAAATCATTACC+AGG | 0.628312 | 5_2:-46560142 | None:intergenic |
| ACAATGTTGCAAAATGCATG+AGG | 0.631179 | 5_2:+46564831 | Msa0772260:CDS |
| GAAGAGCTTGTTGAAAGGGG+TGG | 0.671067 | 5_2:+46563291 | Msa0772260:CDS |
| CCTTTAGGGAATCATAATGG+AGG | 0.682295 | 5_2:+46564619 | Msa0772260:intron |
| CAATGTTGCAAAATGCATGA+GGG | 0.686179 | 5_2:+46564832 | Msa0772260:CDS |
| ACCTCGTACATCAAGCAGGT+AGG | 0.712250 | 5_2:-46565143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATAAATTATTAGGT+TGG | - | chr5_2:46560587-46560606 | None:intergenic | 10.0% |
| !! | TAATTTATAATTTATAGTTG+AGG | + | chr5_2:46560593-46560612 | Msa0772260:intron | 10.0% |
| !! | AATTTATAATTTATAGTTGA+GGG | + | chr5_2:46560594-46560613 | Msa0772260:intron | 10.0% |
| !!! | AATTAATGTTTTATTTTCTA+TGG | - | chr5_2:46561452-46561471 | None:intergenic | 10.0% |
| !! | AGTGTATATTTAATTATTAT+GGG | - | chr5_2:46561949-46561968 | None:intergenic | 10.0% |
| !! | TAGTGTATATTTAATTATTA+TGG | - | chr5_2:46561950-46561969 | None:intergenic | 10.0% |
| !!! | TTGTTTCATATTTTATAATA+TGG | + | chr5_2:46562184-46562203 | Msa0772260:intron | 10.0% |
| !!! | AATTTTGATTATATTAAAGT+GGG | + | chr5_2:46562264-46562283 | Msa0772260:intron | 10.0% |
| !!! | TTATAATATTTTTCTATTGA+AGG | - | chr5_2:46562774-46562793 | None:intergenic | 10.0% |
| !!! | TTTTATTTAATTTATGTTGA+TGG | + | chr5_2:46564144-46564163 | Msa0772260:intron | 10.0% |
| !!! | TTTATTTAATTTATGTTGAT+GGG | + | chr5_2:46564145-46564164 | Msa0772260:intron | 10.0% |
| !! | TCTATATAATATTAACTACT+AGG | + | chr5_2:46560425-46560444 | Msa0772260:intron | 15.0% |
| !! | ATTTATAATTTATAGTTGAG+GGG | + | chr5_2:46560595-46560614 | Msa0772260:intron | 15.0% |
| !! | AAAAAAAAATAGTGATTTAG+AGG | + | chr5_2:46561595-46561614 | Msa0772260:intron | 15.0% |
| !!! | TCTAATTTTTTTTTGTTTTG+TGG | - | chr5_2:46561677-46561696 | None:intergenic | 15.0% |
| !!! | AAATGTGTTTTTATTTTTAC+AGG | + | chr5_2:46561816-46561835 | Msa0772260:intron | 15.0% |
| !!! | GTATAAATTTTAACATAAGA+GGG | - | chr5_2:46561889-46561908 | None:intergenic | 15.0% |
| !!! | AGTATAAATTTTAACATAAG+AGG | - | chr5_2:46561890-46561909 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTCTTAAATGG+TGG | - | chr5_2:46562029-46562048 | None:intergenic | 15.0% |
| !!! | GAATTTTGATTATATTAAAG+TGG | + | chr5_2:46562263-46562282 | Msa0772260:intron | 15.0% |
| !! | TTTGAAGAAAAATAATATTG+CGG | - | chr5_2:46562291-46562310 | None:intergenic | 15.0% |
| !!! | TTTATTTCTAATTATCTAGT+TGG | - | chr5_2:46562333-46562352 | None:intergenic | 15.0% |
| !!! | TAGATTTTAACATAATTAAG+AGG | + | chr5_2:46562376-46562395 | Msa0772260:intron | 15.0% |
| !!! | TTTTCTAATATGTTTTGAAA+GGG | + | chr5_2:46562446-46562465 | Msa0772260:intron | 15.0% |
| !!! | CATATAGATTTTTGTTTTTA+AGG | - | chr5_2:46562740-46562759 | None:intergenic | 15.0% |
| !!! | TGGTATGATTTTAATATTTT+TGG | + | chr5_2:46563311-46563330 | Msa0772260:CDS | 15.0% |
| !!! | GGTATGATTTTAATATTTTT+GGG | + | chr5_2:46563312-46563331 | Msa0772260:CDS | 15.0% |
| !!! | ACAATTTCAACATTTTTTAT+CGG | - | chr5_2:46563670-46563689 | None:intergenic | 15.0% |
| !! | TAAAAAATGTTGAAATTGTT+AGG | + | chr5_2:46563671-46563690 | Msa0772260:intron | 15.0% |
| !!! | ATTACTTTTGTCATTTTTTT+TGG | + | chr5_2:46563815-46563834 | Msa0772260:intron | 15.0% |
| !!! | AACTATTACTTTTAAACAAA+TGG | - | chr5_2:46564124-46564143 | None:intergenic | 15.0% |
| !!! | ACATTTTTATTGATTCTTTT+AGG | + | chr5_2:46564462-46564481 | Msa0772260:intron | 15.0% |
| !! | TCTATAAAAAACTTTCAATA+AGG | - | chr5_2:46564573-46564592 | None:intergenic | 15.0% |
| !!! | TTATTGAAAGTTTTTTATAG+AGG | + | chr5_2:46564572-46564591 | Msa0772260:intron | 15.0% |
| !!! | AAAAAAAATAGTTTAGAGTT+AGG | - | chr5_2:46565090-46565109 | None:intergenic | 15.0% |
| !! | ATTATTGTTTAGATAACGAA+AGG | - | chr5_2:46560343-46560362 | None:intergenic | 20.0% |
| !! | TAATATGTAAACCACTAAAT+TGG | + | chr5_2:46560359-46560378 | Msa0772260:intron | 20.0% |
| !!! | TTTATTTTCTAGATAACGAA+AGG | - | chr5_2:46561199-46561218 | None:intergenic | 20.0% |
| !!! | ATAATTAATCTCTCTTTTGT+TGG | - | chr5_2:46561705-46561724 | None:intergenic | 20.0% |
| !! | TATTTAATTATTATGGGATG+TGG | - | chr5_2:46561943-46561962 | None:intergenic | 20.0% |
| !! | TTACTAAAGTCGATAAAATA+TGG | - | chr5_2:46562135-46562154 | None:intergenic | 20.0% |
| !! | TTGAAGAAAAATAATATTGC+GGG | - | chr5_2:46562290-46562309 | None:intergenic | 20.0% |
| !!! | GTTTTCTAATATGTTTTGAA+AGG | + | chr5_2:46562445-46562464 | Msa0772260:intron | 20.0% |
| !!! | TTTCTAATATGTTTTGAAAG+GGG | + | chr5_2:46562447-46562466 | Msa0772260:intron | 20.0% |
| !!! | GTTAGAATTCACATTTTTTA+AGG | - | chr5_2:46562661-46562680 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAAGTAGTATAA+TGG | - | chr5_2:46562683-46562702 | None:intergenic | 20.0% |
| !! | AACAGTAAAACATACAATAT+TGG | + | chr5_2:46562866-46562885 | Msa0772260:intron | 20.0% |
| !!! | TTTTCTTTCTCAAATTAAGA+AGG | - | chr5_2:46562991-46563010 | None:intergenic | 20.0% |
| !!! | ATTTTAAACAAGTGACTTAT+AGG | + | chr5_2:46563559-46563578 | Msa0772260:intron | 20.0% |
| !!! | AAAGGTTTTTAGTAATATGT+TGG | - | chr5_2:46564011-46564030 | None:intergenic | 20.0% |
| !!! | CTGAGTAAAAAAAAGAATTT+TGG | - | chr5_2:46564323-46564342 | None:intergenic | 20.0% |
| !!! | TGTGTGTATACATTTTAAAT+TGG | + | chr5_2:46564346-46564365 | Msa0772260:intron | 20.0% |
| !! | GATATCACAAATAAAGTGTT+TGG | - | chr5_2:46560040-46560059 | None:intergenic | 25.0% |
| ! | ATGTTATTGAAATCATTACC+AGG | - | chr5_2:46560145-46560164 | None:intergenic | 25.0% |
| !!! | ATAAAATGCGTTGTTTTAGT+TGG | - | chr5_2:46560277-46560296 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTCCCTAAAAAT+TGG | + | chr5_2:46560459-46560478 | Msa0772260:intron | 25.0% |
| ! | GTGTTTGAATTATGTTTATG+TGG | + | chr5_2:46560898-46560917 | Msa0772260:intron | 25.0% |
| ! | TGATATACAAACTTTAACGA+GGG | - | chr5_2:46561018-46561037 | None:intergenic | 25.0% |
| !! | TCATTTGTAAGTTCTTTTGT+CGG | - | chr5_2:46561355-46561374 | None:intergenic | 25.0% |
| ! | TTAGTTACAGTTATCATGAT+TGG | - | chr5_2:46561407-46561426 | None:intergenic | 25.0% |
| ! | TTGTAATTCAAACATCTCAT+GGG | - | chr5_2:46561920-46561939 | None:intergenic | 25.0% |
| ! | TTTAACATAATTAAGAGGTG+TGG | + | chr5_2:46562381-46562400 | Msa0772260:intron | 25.0% |
| !! | TTAACATAATTAAGAGGTGT+GGG | + | chr5_2:46562382-46562401 | Msa0772260:intron | 25.0% |
| !!! | TTCTAATATGTTTTGAAAGG+GGG | + | chr5_2:46562448-46562467 | Msa0772260:intron | 25.0% |
| !!! | TTATAAAGCTAGTTTTTGAG+AGG | - | chr5_2:46562560-46562579 | None:intergenic | 25.0% |
| !!! | TATTGGTTAGTTTTATGTTG+TGG | + | chr5_2:46562883-46562902 | Msa0772260:intron | 25.0% |
| !!! | ATTGGTTAGTTTTATGTTGT+GGG | + | chr5_2:46562884-46562903 | Msa0772260:intron | 25.0% |
| !! | TTTGGTATAATTTTCTAAGC+AGG | - | chr5_2:46562948-46562967 | None:intergenic | 25.0% |
| ! | GCTTAGAAAATTATACCAAA+TGG | + | chr5_2:46562948-46562967 | Msa0772260:intron | 25.0% |
| !! | ATTGTCGTTTGTCATTAATT+AGG | + | chr5_2:46563143-46563162 | Msa0772260:intron | 25.0% |
| ! | TTATTGTTCTCTACATCATT+AGG | - | chr5_2:46563171-46563190 | None:intergenic | 25.0% |
| ! | TAATGATGTAGAGAACAATA+AGG | + | chr5_2:46563170-46563189 | Msa0772260:CDS | 25.0% |
| ! | AATGATGTAGAGAACAATAA+GGG | + | chr5_2:46563171-46563190 | Msa0772260:CDS | 25.0% |
| ! | CAATAAGGGTAATATTTACA+TGG | + | chr5_2:46563185-46563204 | Msa0772260:CDS | 25.0% |
| ! | TTACCTAATTCATACAATCT+CGG | - | chr5_2:46563599-46563618 | None:intergenic | 25.0% |
| ! | GTTGAGTTAATACTTATAGA+CGG | - | chr5_2:46563648-46563667 | None:intergenic | 25.0% |
| ! | AAATGTTGAAATTGTTAGGT+CGG | + | chr5_2:46563675-46563694 | Msa0772260:intron | 25.0% |
| !! | TAATCAACGATTTTCAACTT+TGG | - | chr5_2:46563799-46563818 | None:intergenic | 25.0% |
| ! | AATCGATGAATTATTATCTG+CGG | + | chr5_2:46563909-46563928 | Msa0772260:intron | 25.0% |
| !! | ATAATACTCTTTGTTATGCA+GGG | + | chr5_2:46563976-46563995 | Msa0772260:intron | 25.0% |
| ! | TTTAGTAATATGTTGGAAGA+CGG | - | chr5_2:46564004-46564023 | None:intergenic | 25.0% |
| ! | TTTAGGAGATTAAAAGTCTT+AGG | + | chr5_2:46564479-46564498 | Msa0772260:intron | 25.0% |
| ! | AATTGCCAAAATATTTGTCT+TGG | + | chr5_2:46564595-46564614 | Msa0772260:intron | 25.0% |
| !!! | AATTAGAGGTTTTGAAAGAA+GGG | + | chr5_2:46564696-46564715 | Msa0772260:CDS | 25.0% |
| !!! | TTTTTTTCTTTCTTTCTGAC+TGG | + | chr5_2:46565006-46565025 | Msa0772260:exon | 25.0% |
| ! | ATCTGAAGTTATCAAAACAG+TGG | + | chr5_2:46560057-46560076 | Msa0772260:CDS | 30.0% |
| AGAGAAACTAAATGATGAAG+TGG | + | chr5_2:46560189-46560208 | Msa0772260:CDS | 30.0% | |
| AAACTAAATGATGAAGTGGA+AGG | + | chr5_2:46560193-46560212 | Msa0772260:CDS | 30.0% | |
| ! | ATTGGTCCATGTTTTATCAA+TGG | + | chr5_2:46560220-46560239 | Msa0772260:CDS | 30.0% |
| ! | TTGGTCCATGTTTTATCAAT+GGG | + | chr5_2:46560221-46560240 | Msa0772260:CDS | 30.0% |
| ACTTCAGAAACAAATCACTA+AGG | - | chr5_2:46560623-46560642 | None:intergenic | 30.0% | |
| GATCTCAAATCAAAAGTGAT+CGG | - | chr5_2:46560654-46560673 | None:intergenic | 30.0% | |
| !!! | GATCACTTTTGATTTGAGAT+CGG | + | chr5_2:46560653-46560672 | Msa0772260:intron | 30.0% |
| ! | AGTTTCTTGACTCAAGTTTT+TGG | + | chr5_2:46560681-46560700 | Msa0772260:intron | 30.0% |
| !!! | TTTGTTTTTAGGAGTGACTT+TGG | + | chr5_2:46560856-46560875 | Msa0772260:intron | 30.0% |
| CTGATATACAAACTTTAACG+AGG | - | chr5_2:46561019-46561038 | None:intergenic | 30.0% | |
| AGTTTGTATATCAGCATAGT+AGG | + | chr5_2:46561025-46561044 | Msa0772260:intron | 30.0% | |
| GTTTGTATATCAGCATAGTA+GGG | + | chr5_2:46561026-46561045 | Msa0772260:intron | 30.0% | |
| TTTGTATATCAGCATAGTAG+GGG | + | chr5_2:46561027-46561046 | Msa0772260:intron | 30.0% | |
| AGTTTGTAAATACTCTTGTG+TGG | - | chr5_2:46561297-46561316 | None:intergenic | 30.0% | |
| !! | CAAGAGTATTTACAAACTCA+AGG | + | chr5_2:46561299-46561318 | Msa0772260:intron | 30.0% |
| ACAAATGAACACTCATACAA+AGG | + | chr5_2:46561367-46561386 | Msa0772260:intron | 30.0% | |
| !! | TTTTTCAAACTTCACGTAAG+TGG | + | chr5_2:46561842-46561861 | Msa0772260:intron | 30.0% |
| GTTGTAATTCAAACATCTCA+TGG | - | chr5_2:46561921-46561940 | None:intergenic | 30.0% | |
| ! | TAACATAATTAAGAGGTGTG+GGG | + | chr5_2:46562383-46562402 | Msa0772260:intron | 30.0% |
| !!! | TCTAATATGTTTTGAAAGGG+GGG | + | chr5_2:46562449-46562468 | Msa0772260:intron | 30.0% |
| ! | GTATAATTTTCTAAGCAGGA+AGG | - | chr5_2:46562944-46562963 | None:intergenic | 30.0% |
| ATGAAAAAAGAGAGTCCATT+TGG | - | chr5_2:46562966-46562985 | None:intergenic | 30.0% | |
| !! | TAAGCTTTGAGCACATTTAT+GGG | - | chr5_2:46563222-46563241 | None:intergenic | 30.0% |
| !! | ATAAGCTTTGAGCACATTTA+TGG | - | chr5_2:46563223-46563242 | None:intergenic | 30.0% |
| !!! | ATCGATTGGTGAGTTTTAAA+TGG | - | chr5_2:46563896-46563915 | None:intergenic | 30.0% |
| GCAGATAATAATTCATCGAT+TGG | - | chr5_2:46563910-46563929 | None:intergenic | 30.0% | |
| ATCGATGAATTATTATCTGC+GGG | + | chr5_2:46563910-46563929 | Msa0772260:intron | 30.0% | |
| ! | GATAATACTCTTTGTTATGC+AGG | + | chr5_2:46563975-46563994 | Msa0772260:intron | 30.0% |
| TTAGTAATATGTTGGAAGAC+GGG | - | chr5_2:46564003-46564022 | None:intergenic | 30.0% | |
| ! | TGGTTCCTCTAAAAAAGAAA+AGG | - | chr5_2:46564303-46564322 | None:intergenic | 30.0% |
| ! | AAGGACCAAGACAAATATTT+TGG | - | chr5_2:46564603-46564622 | None:intergenic | 30.0% |
| AATATTTGTCTTGGTCCTTT+AGG | + | chr5_2:46564604-46564623 | Msa0772260:intron | 30.0% | |
| ATATTTGTCTTGGTCCTTTA+GGG | + | chr5_2:46564605-46564624 | Msa0772260:intron | 30.0% | |
| !!! | GAATTAGAGGTTTTGAAAGA+AGG | + | chr5_2:46564695-46564714 | Msa0772260:CDS | 30.0% |
| TAGAAGTAACAGAAATGCAT+TGG | + | chr5_2:46564738-46564757 | Msa0772260:CDS | 30.0% | |
| GATTGGAATGATATTGATGT+TGG | + | chr5_2:46564773-46564792 | Msa0772260:CDS | 30.0% | |
| TTCATGAACACTTGGTATTC+TGG | - | chr5_2:46560115-46560134 | None:intergenic | 35.0% | |
| GAAGATCATTCATGAACACT+TGG | - | chr5_2:46560123-46560142 | None:intergenic | 35.0% | |
| TAAATGATGAAGTGGAAGGT+GGG | + | chr5_2:46560197-46560216 | Msa0772260:CDS | 35.0% | |
| ! | TGGTCCATGTTTTATCAATG+GGG | + | chr5_2:46560222-46560241 | Msa0772260:CDS | 35.0% |
| ATCCTACCATAAAAATCACC+AGG | - | chr5_2:46560250-46560269 | None:intergenic | 35.0% | |
| GTTTAGATAACGAAAGGATG+TGG | - | chr5_2:46560337-46560356 | None:intergenic | 35.0% | |
| !! | GTTCAAGGCACCAATTTTTA+GGG | - | chr5_2:46560472-46560491 | None:intergenic | 35.0% |
| !! | AGTTCAAGGCACCAATTTTT+AGG | - | chr5_2:46560473-46560492 | None:intergenic | 35.0% |
| ! | TATTCTACTTGTGGACTACT+GGG | - | chr5_2:46560523-46560542 | None:intergenic | 35.0% |
| AGTCCACAAGTAGAATACAA+CGG | + | chr5_2:46560526-46560545 | Msa0772260:intron | 35.0% | |
| ! | TTTTGTATAGAGAATGGCAG+GGG | - | chr5_2:46560563-46560582 | None:intergenic | 35.0% |
| ! | CTTTTGTATAGAGAATGGCA+GGG | - | chr5_2:46560564-46560583 | None:intergenic | 35.0% |
| !!! | GTTGGCTTTTGTATAGAGAA+TGG | - | chr5_2:46560569-46560588 | None:intergenic | 35.0% |
| !! | AGTGATTTGTTTCTGAAGTC+TGG | + | chr5_2:46560624-46560643 | Msa0772260:intron | 35.0% |
| ! | TTTGTGTTGATGAGAAGGTA+AGG | + | chr5_2:46560804-46560823 | Msa0772260:intron | 35.0% |
| !! | AAGGTAAGGTGTTGTTGTTT+GGG | + | chr5_2:46560818-46560837 | Msa0772260:intron | 35.0% |
| !! | TTGTTGTTTGGGATTTCAGT+GGG | + | chr5_2:46560829-46560848 | Msa0772260:intron | 35.0% |
| TTGTATATCAGCATAGTAGG+GGG | + | chr5_2:46561028-46561047 | Msa0772260:intron | 35.0% | |
| TTCTAGATAACGAAAGGATG+TGG | - | chr5_2:46561193-46561212 | None:intergenic | 35.0% | |
| ! | GTTCTTTTGTCGGTATAGTT+GGG | - | chr5_2:46561345-46561364 | None:intergenic | 35.0% |
| ! | AGTTCTTTTGTCGGTATAGT+TGG | - | chr5_2:46561346-46561365 | None:intergenic | 35.0% |
| GTTACAGTTATCATGATTGG+TGG | - | chr5_2:46561404-46561423 | None:intergenic | 35.0% | |
| ! | ATTCAAGTTTCTCTCAGAAG+AGG | + | chr5_2:46562412-46562431 | Msa0772260:intron | 35.0% |
| ! | TTCAAGTTTCTCTCAGAAGA+GGG | + | chr5_2:46562413-46562432 | Msa0772260:intron | 35.0% |
| !!! | CTAATATGTTTTGAAAGGGG+GGG | + | chr5_2:46562450-46562469 | Msa0772260:intron | 35.0% |
| ! | TCAAGTATCTTTGAAGAGTG+TGG | + | chr5_2:46562511-46562530 | Msa0772260:intron | 35.0% |
| TCTGTACATGTGGATCTTTA+AGG | - | chr5_2:46562713-46562732 | None:intergenic | 35.0% | |
| TTAAGGATTCTCTGTACATG+TGG | - | chr5_2:46562723-46562742 | None:intergenic | 35.0% | |
| !!! | GTTAGTTTTATGTTGTGGGT+GGG | + | chr5_2:46562888-46562907 | Msa0772260:intron | 35.0% |
| !!! | TTAGTTTTATGTTGTGGGTG+GGG | + | chr5_2:46562889-46562908 | Msa0772260:intron | 35.0% |
| TAGCGAGACTATGTTGAAAA+GGG | - | chr5_2:46563020-46563039 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGCACATTTATG+GGG | - | chr5_2:46563221-46563240 | None:intergenic | 35.0% |
| !! | CAAAGAGTGCTGCTATATTT+GGG | + | chr5_2:46563359-46563378 | Msa0772260:CDS | 35.0% |
| TTGCCGAGATTGTATGAATT+AGG | + | chr5_2:46563593-46563612 | Msa0772260:intron | 35.0% | |
| ACACATATAAATTGAGCTGC+CGG | - | chr5_2:46563723-46563742 | None:intergenic | 35.0% | |
| !!! | TTGGAGATGCTTCGATTTTT+TGG | - | chr5_2:46563780-46563799 | None:intergenic | 35.0% |
| !!! | GCACACCTTTTCTTTTTTAG+AGG | + | chr5_2:46564295-46564314 | Msa0772260:intron | 35.0% |
| GAGATTAAAAGTCTTAGGAC+CGG | + | chr5_2:46564484-46564503 | Msa0772260:intron | 35.0% | |
| ! | AATCATAATGGAGGAGCAAA+TGG | + | chr5_2:46564628-46564647 | Msa0772260:CDS | 35.0% |
| AATTCTACTTCTGATGAGGA+TGG | - | chr5_2:46564680-46564699 | None:intergenic | 35.0% | |
| CTCTAATTCTACTTCTGATG+AGG | - | chr5_2:46564684-46564703 | None:intergenic | 35.0% | |
| CTCATCAGAAGTAGAATTAG+AGG | + | chr5_2:46564682-46564701 | Msa0772260:CDS | 35.0% | |
| ATTGGAATGCTTACGATGAT+TGG | + | chr5_2:46564756-46564775 | Msa0772260:CDS | 35.0% | |
| ACAATGTTGCAAAATGCATG+AGG | + | chr5_2:46564831-46564850 | Msa0772260:CDS | 35.0% | |
| CAATGTTGCAAAATGCATGA+GGG | + | chr5_2:46564832-46564851 | Msa0772260:CDS | 35.0% | |
| TTTAGCTAGTCGAATGTCTA+AGG | + | chr5_2:46564931-46564950 | Msa0772260:CDS | 35.0% | |
| GTGTTCATGAATGATCTTCC+TGG | + | chr5_2:46560124-46560143 | Msa0772260:CDS | 40.0% | |
| CTAAATGATGAAGTGGAAGG+TGG | + | chr5_2:46560196-46560215 | Msa0772260:CDS | 40.0% | |
| ! | TGCCTGGTGATTTTTATGGT+AGG | + | chr5_2:46560245-46560264 | Msa0772260:intron | 40.0% |
| GTAAACCACTAAATTGGACG+CGG | + | chr5_2:46560365-46560384 | Msa0772260:intron | 40.0% | |
| ! | ATTCTACTTGTGGACTACTG+GGG | - | chr5_2:46560522-46560541 | None:intergenic | 40.0% |
| ! | GTATTCTACTTGTGGACTAC+TGG | - | chr5_2:46560524-46560543 | None:intergenic | 40.0% |
| GTCCACAAGTAGAATACAAC+GGG | + | chr5_2:46560527-46560546 | Msa0772260:intron | 40.0% | |
| AAGTAGAATACAACGGGAGT+AGG | + | chr5_2:46560533-46560552 | Msa0772260:intron | 40.0% | |
| ! | GCTTTTGTATAGAGAATGGC+AGG | - | chr5_2:46560565-46560584 | None:intergenic | 40.0% |
| !! | GATTTGTTTCTGAAGTCTGG+TGG | + | chr5_2:46560627-46560646 | Msa0772260:intron | 40.0% |
| !!! | CTCAAGTTTTTGGCGTGTTT+TGG | + | chr5_2:46560691-46560710 | Msa0772260:intron | 40.0% |
| !!! | TGTTTTGGTGTTTTCTCCGA+CGG | + | chr5_2:46560706-46560725 | Msa0772260:intron | 40.0% |
| ! | GTGAGTTTGTGTTGATGAGA+AGG | + | chr5_2:46560799-46560818 | Msa0772260:intron | 40.0% |
| !! | GAAGGTAAGGTGTTGTTGTT+TGG | + | chr5_2:46560817-46560836 | Msa0772260:intron | 40.0% |
| !! | GTTGTTGTTTGGGATTTCAG+TGG | + | chr5_2:46560828-46560847 | Msa0772260:intron | 40.0% |
| !! | CAGTGGGTGTGTTTGTTTTT+AGG | + | chr5_2:46560845-46560864 | Msa0772260:intron | 40.0% |
| AATTTGGCGTAGCCTATACA+GGG | - | chr5_2:46561073-46561092 | None:intergenic | 40.0% | |
| TGAACACTCATACAAAGGAG+CGG | + | chr5_2:46561372-46561391 | Msa0772260:intron | 40.0% | |
| !!! | GGTTAGTTTTATGTTGTGGG+TGG | + | chr5_2:46562887-46562906 | Msa0772260:intron | 40.0% |
| GACGAGAGATAACGAGTTTA+GGG | - | chr5_2:46562922-46562941 | None:intergenic | 40.0% | |
| AGCGAGACTATGTTGAAAAG+GGG | - | chr5_2:46563019-46563038 | None:intergenic | 40.0% | |
| GTAGCGAGACTATGTTGAAA+AGG | - | chr5_2:46563021-46563040 | None:intergenic | 40.0% | |
| !! | GCAAAGAGTGCTGCTATATT+TGG | + | chr5_2:46563358-46563377 | Msa0772260:CDS | 40.0% |
| TGCTATTGCTCTTAACGACA+TGG | + | chr5_2:46563389-46563408 | Msa0772260:CDS | 40.0% | |
| CATACAATCTCGGCAATATC+TGG | - | chr5_2:46563589-46563608 | None:intergenic | 40.0% | |
| ACATATAAATTGAGCTGCCG+GGG | - | chr5_2:46563721-46563740 | None:intergenic | 40.0% | |
| CACATATAAATTGAGCTGCC+GGG | - | chr5_2:46563722-46563741 | None:intergenic | 40.0% | |
| CTTAAGTTTGCACACATGAG+AGG | + | chr5_2:46563851-46563870 | Msa0772260:intron | 40.0% | |
| GATGTTAAAGGAGGAAGTGA+GGG | - | chr5_2:46564226-46564245 | None:intergenic | 40.0% | |
| ! | AAGAAAAGGTGTGCATTGAG+CGG | - | chr5_2:46564289-46564308 | None:intergenic | 40.0% |
| ! | GGTCCTTTAGGGAATCATAA+TGG | + | chr5_2:46564616-46564635 | Msa0772260:intron | 40.0% |
| CCTCCATTATGATTCCCTAA+AGG | - | chr5_2:46564622-46564641 | None:intergenic | 40.0% | |
| ! | CCTTTAGGGAATCATAATGG+AGG | + | chr5_2:46564619-46564638 | Msa0772260:intron | 40.0% |
| TGGAGAAGCTATCATTGAAG+AGG | + | chr5_2:46564886-46564905 | Msa0772260:CDS | 40.0% | |
| ! | CTTGGTATTCTGGAGACTCA+TGG | - | chr5_2:46560105-46560124 | None:intergenic | 45.0% |
| GGCACCCCATTGATAAAACA+TGG | - | chr5_2:46560229-46560248 | None:intergenic | 45.0% | |
| !! | TGTTTTATCAATGGGGTGCC+TGG | + | chr5_2:46560229-46560248 | Msa0772260:intron | 45.0% |
| ATTGAAGGCTGTACGAGGAA+TGG | - | chr5_2:46560300-46560319 | None:intergenic | 45.0% | |
| ATTCCTCGTACAGCCTTCAA+TGG | + | chr5_2:46560299-46560318 | Msa0772260:intron | 45.0% | |
| GTACCTGTGATAGCCATTGA+AGG | - | chr5_2:46560315-46560334 | None:intergenic | 45.0% | |
| AAAGACCGCGTCCAATTTAG+TGG | - | chr5_2:46560373-46560392 | None:intergenic | 45.0% | |
| CTCCCGTTGTATTCTACTTG+TGG | - | chr5_2:46560532-46560551 | None:intergenic | 45.0% | |
| TTGACTCAGTTGTTGTGACG+AGG | + | chr5_2:46560772-46560791 | Msa0772260:intron | 45.0% | |
| CACTGTGCAAAACGAACAGA+GGG | - | chr5_2:46560929-46560948 | None:intergenic | 45.0% | |
| TCACTGTGCAAAACGAACAG+AGG | - | chr5_2:46560930-46560949 | None:intergenic | 45.0% | |
| ATTTGGCGTAGCCTATACAG+GGG | - | chr5_2:46561072-46561091 | None:intergenic | 45.0% | |
| CAATTTGGCGTAGCCTATAC+AGG | - | chr5_2:46561074-46561093 | None:intergenic | 45.0% | |
| CTGTATAGGCTACGCCAAAT+TGG | + | chr5_2:46561072-46561091 | Msa0772260:intron | 45.0% | |
| TATAGGCTACGCCAAATTGG+TGG | + | chr5_2:46561075-46561094 | Msa0772260:intron | 45.0% | |
| ATAGGCTACGCCAAATTGGT+GGG | + | chr5_2:46561076-46561095 | Msa0772260:intron | 45.0% | |
| TTCATTCCTCGTACAGCCAA+TGG | + | chr5_2:46561165-46561184 | Msa0772260:intron | 45.0% | |
| ! | TGTCTTTTGCACGCCTTATG+CGG | - | chr5_2:46561272-46561291 | None:intergenic | 45.0% |
| TCAACTGAGCTATGCTCATG+GGG | - | chr5_2:46562622-46562641 | None:intergenic | 45.0% | |
| GTCAACTGAGCTATGCTCAT+GGG | - | chr5_2:46562623-46562642 | None:intergenic | 45.0% | |
| TGTCAACTGAGCTATGCTCA+TGG | - | chr5_2:46562624-46562643 | None:intergenic | 45.0% | |
| ATGAGCATAGCTCAGTTGAC+AGG | + | chr5_2:46562623-46562642 | Msa0772260:intron | 45.0% | |
| GGACGAGAGATAACGAGTTT+AGG | - | chr5_2:46562923-46562942 | None:intergenic | 45.0% | |
| !! | TGCCGAAGAGCTTGTTGAAA+GGG | + | chr5_2:46563287-46563306 | Msa0772260:CDS | 45.0% |
| ACCCCTTTCAACAAGCTCTT+CGG | - | chr5_2:46563292-46563311 | None:intergenic | 45.0% | |
| TGCTCTTAACGACATGGTCT+TGG | + | chr5_2:46563395-46563414 | Msa0772260:CDS | 45.0% | |
| ! | TCTTAACGACATGGTCTTGG+AGG | + | chr5_2:46563398-46563417 | Msa0772260:CDS | 45.0% |
| TCATGATCGGATTCTAACCC+CGG | + | chr5_2:46563701-46563720 | Msa0772260:intron | 45.0% | |
| ATTATCTGCGGGACGAGAAT+TGG | + | chr5_2:46563921-46563940 | Msa0772260:intron | 45.0% | |
| TTATCTGCGGGACGAGAATT+GGG | + | chr5_2:46563922-46563941 | Msa0772260:intron | 45.0% | |
| GTAGATCTCCACAGTCTCTA+TGG | - | chr5_2:46564174-46564193 | None:intergenic | 45.0% | |
| AGAGACTGTGGAGATCTACA+TGG | + | chr5_2:46564175-46564194 | Msa0772260:intron | 45.0% | |
| ACTGTGGAGATCTACATGGA+TGG | + | chr5_2:46564179-46564198 | Msa0772260:intron | 45.0% | |
| GGATGTTAAAGGAGGAAGTG+AGG | - | chr5_2:46564227-46564246 | None:intergenic | 45.0% | |
| TCGTGACTGGATGTTAAAGG+AGG | - | chr5_2:46564235-46564254 | None:intergenic | 45.0% | |
| CACTCGTGACTGGATGTTAA+AGG | - | chr5_2:46564238-46564257 | None:intergenic | 45.0% | |
| CTTTAACATCCAGTCACGAG+TGG | + | chr5_2:46564236-46564255 | Msa0772260:intron | 45.0% | |
| CATTCCTGGCATTATGCTCA+GGG | - | chr5_2:46564262-46564281 | None:intergenic | 45.0% | |
| TCATTCCTGGCATTATGCTC+AGG | - | chr5_2:46564263-46564282 | None:intergenic | 45.0% | |
| GAGCATAATGCCAGGAATGA+CGG | + | chr5_2:46564263-46564282 | Msa0772260:intron | 45.0% | |
| GATGAGGATGGTGTGTATTG+AGG | - | chr5_2:46564668-46564687 | None:intergenic | 45.0% | |
| CCAAAGTGACTGACCAACAA+AGG | - | chr5_2:46564869-46564888 | None:intergenic | 45.0% | |
| CCTTTGTTGGTCAGTCACTT+TGG | + | chr5_2:46564866-46564885 | Msa0772260:CDS | 45.0% | |
| !! | ACTATAAATTATAAATTATT+AGG | - | chr5_2:46560591-46560610 | None:intergenic | 5.0% |
| !!! | TTATAATTTTTTTTCTTAAA+TGG | - | chr5_2:46562032-46562051 | None:intergenic | 5.0% |
| !! | TAGAAATAAAAAAAATATTA+AGG | + | chr5_2:46562343-46562362 | Msa0772260:intron | 5.0% |
| !! | AGAAATAAAAAAAATATTAA+GGG | + | chr5_2:46562344-46562363 | Msa0772260:intron | 5.0% |
| !! | TATATAAACAATTATAAAAA+AGG | - | chr5_2:46564029-46564048 | None:intergenic | 5.0% |
| GATGAAGTGGAAGGTGGGAT+TGG | + | chr5_2:46560202-46560221 | Msa0772260:CDS | 50.0% | |
| !! | GGGGTGCCTGGTGATTTTTA+TGG | + | chr5_2:46560241-46560260 | Msa0772260:intron | 50.0% |
| TAGCCATTGAAGGCTGTACG+AGG | - | chr5_2:46560305-46560324 | None:intergenic | 50.0% | |
| CAGCCTTCAATGGCTATCAC+AGG | + | chr5_2:46560309-46560328 | Msa0772260:intron | 50.0% | |
| TCAGTTGTTGTGACGAGGTG+AGG | + | chr5_2:46560777-46560796 | Msa0772260:intron | 50.0% | |
| TGGTGCGAGTAACGTGTGAT+AGG | + | chr5_2:46560876-46560895 | Msa0772260:intron | 50.0% | |
| TTTGGCGTAGCCTATACAGG+GGG | - | chr5_2:46561071-46561090 | None:intergenic | 50.0% | |
| !! | ACGAAAGGATGTGGTGCCAT+TGG | - | chr5_2:46561184-46561203 | None:intergenic | 50.0% |
| ACTGTGATTCACCCCGCATA+AGG | + | chr5_2:46561256-46561275 | Msa0772260:intron | 50.0% | |
| ! | TCTTTTGCACGCCTTATGCG+GGG | - | chr5_2:46561270-46561289 | None:intergenic | 50.0% |
| ! | GTCTTTTGCACGCCTTATGC+GGG | - | chr5_2:46561271-46561290 | None:intergenic | 50.0% |
| !! | GTGCCGAAGAGCTTGTTGAA+AGG | + | chr5_2:46563286-46563305 | Msa0772260:CDS | 50.0% |
| !! | GCCGAAGAGCTTGTTGAAAG+GGG | + | chr5_2:46563288-46563307 | Msa0772260:CDS | 50.0% |
| !! | GAAGAGCTTGTTGAAAGGGG+TGG | + | chr5_2:46563291-46563310 | Msa0772260:CDS | 50.0% |
| GTTAGGTCGGACGTCATGAT+CGG | + | chr5_2:46563688-46563707 | Msa0772260:intron | 50.0% | |
| ATGGGTCTCCATAGAGACTG+TGG | + | chr5_2:46564163-46564182 | Msa0772260:intron | 50.0% | |
| GTTAAAGGAGGAAGTGAGGG+TGG | - | chr5_2:46564223-46564242 | None:intergenic | 50.0% | |
| TGCAAAATGCATGAGGGCTG+TGG | + | chr5_2:46564838-46564857 | Msa0772260:CDS | 50.0% | |
| GGCTGTGGTTGAACCTTTGT+TGG | + | chr5_2:46564853-46564872 | Msa0772260:CDS | 50.0% | |
| ! | CTACTTGTGGACTACTGGGG+TGG | - | chr5_2:46560519-46560538 | None:intergenic | 55.0% |
| !!! | GTGTTTTCTCCGACGGACTG+TGG | + | chr5_2:46560713-46560732 | Msa0772260:intron | 55.0% |
| CCGATCAATCCACAGTCCGT+CGG | - | chr5_2:46560725-46560744 | None:intergenic | 55.0% | |
| !! | CCGACGGACTGTGGATTGAT+CGG | + | chr5_2:46560722-46560741 | Msa0772260:intron | 55.0% |
| ! | ACGGACTGTGGATTGATCGG+TGG | + | chr5_2:46560725-46560744 | Msa0772260:intron | 55.0% |
| ! | GACTGTGGATTGATCGGTGG+TGG | + | chr5_2:46560728-46560747 | Msa0772260:intron | 55.0% |
| TAGCCTATACAGGGGGCCAT+AGG | - | chr5_2:46561064-46561083 | None:intergenic | 55.0% | |
| ! | GCTACGCCAAATTGGTGGGT+GGG | + | chr5_2:46561080-46561099 | Msa0772260:intron | 55.0% |
| ! | GAAGCACCCACCCACCAATT+TGG | - | chr5_2:46561089-46561108 | None:intergenic | 55.0% |
| GCGGGACGAGAATTGGGAAA+AGG | + | chr5_2:46563928-46563947 | Msa0772260:intron | 55.0% | |
| TTGCCTGAGTCGCGCATTGA+TGG | + | chr5_2:46564803-46564822 | Msa0772260:CDS | 55.0% | |
| ACGGGAGGGACGGTAGTTCA+AGG | - | chr5_2:46560487-46560506 | None:intergenic | 60.0% | |
| CCTATACAGGGGGCCATAGG+AGG | - | chr5_2:46561061-46561080 | None:intergenic | 60.0% | |
| CCTCCTATGGCCCCCTGTAT+AGG | + | chr5_2:46561058-46561077 | Msa0772260:intron | 60.0% | |
| GGCTACGCCAAATTGGTGGG+TGG | + | chr5_2:46561079-46561098 | Msa0772260:intron | 60.0% | |
| !! | GTGGTGCCATTGGCTGTACG+AGG | - | chr5_2:46561174-46561193 | None:intergenic | 60.0% |
| GTGGCCCTGAGCATAATGCC+AGG | + | chr5_2:46564255-46564274 | Msa0772260:intron | 60.0% | |
| CATTGAGCGGCCGTCATTCC+TGG | - | chr5_2:46564276-46564295 | None:intergenic | 60.0% | |
| GCTCCATCAATGCGCGACTC+AGG | - | chr5_2:46564809-46564828 | None:intergenic | 60.0% | |
| ! | TGTGGACTACTGGGGTGGCC+CGG | - | chr5_2:46560514-46560533 | None:intergenic | 65.0% |
| AGGGGGACCACGACCTCCTA+TGG | + | chr5_2:46561045-46561064 | Msa0772260:intron | 65.0% | |
| TGCTCAGGGCCACTCGTGAC+TGG | - | chr5_2:46564248-46564267 | None:intergenic | 65.0% | |
| TACCGTCCCTCCCGTCCACC+CGG | + | chr5_2:46560492-46560511 | Msa0772260:intron | 70.0% | |
| ! | GTGGACTACTGGGGTGGCCC+GGG | - | chr5_2:46560513-46560532 | None:intergenic | 70.0% |
| CAGGGGGCCATAGGAGGTCG+TGG | - | chr5_2:46561055-46561074 | None:intergenic | 70.0% | |
| ACCGTCCCTCCCGTCCACCC+GGG | + | chr5_2:46560493-46560512 | Msa0772260:intron | 75.0% | |
| ACTGGGGTGGCCCGGGTGGA+CGG | - | chr5_2:46560506-46560525 | None:intergenic | 75.0% | |
| GACTACTGGGGTGGCCCGGG+TGG | - | chr5_2:46560510-46560529 | None:intergenic | 75.0% | |
| ! | GCCCGGGTGGACGGGAGGGA+CGG | - | chr5_2:46560497-46560516 | None:intergenic | 80.0% |
| ! | GGTGGCCCGGGTGGACGGGA+GGG | - | chr5_2:46560501-46560520 | None:intergenic | 80.0% |
| ! | CTGGGGTGGCCCGGGTGGAC+GGG | - | chr5_2:46560505-46560524 | None:intergenic | 80.0% |
| ! | GGGTGGCCCGGGTGGACGGG+AGG | - | chr5_2:46560502-46560521 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46560019 | 46565151 | 46560019 | ID=Msa0772260;Name=Msa0772260 |
| chr5_2 | mRNA | 46560019 | 46565151 | 46560019 | ID=Msa0772260-mRNA-1;Parent=Msa0772260;Name=Msa0772260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.66|1|1|1|3|127|292 |
| chr5_2 | exon | 46560019 | 46560243 | 46560019 | ID=Msa0772260-mRNA-1:exon:13900;Parent=Msa0772260-mRNA-1 |
| chr5_2 | exon | 46563165 | 46563419 | 46563165 | ID=Msa0772260-mRNA-1:exon:13901;Parent=Msa0772260-mRNA-1 |
| chr5_2 | exon | 46564626 | 46565151 | 46564626 | ID=Msa0772260-mRNA-1:exon:13902;Parent=Msa0772260-mRNA-1 |
| chr5_2 | CDS | 46560019 | 46560243 | 46560019 | ID=Msa0772260-mRNA-1:cds;Parent=Msa0772260-mRNA-1 |
| chr5_2 | CDS | 46563165 | 46563419 | 46563165 | ID=Msa0772260-mRNA-1:cds;Parent=Msa0772260-mRNA-1 |
| chr5_2 | CDS | 46564626 | 46565024 | 46564626 | ID=Msa0772260-mRNA-1:cds;Parent=Msa0772260-mRNA-1 |
| chr5_2 | three_prime_UTR | 46565025 | 46565151 | 46565025 | ID=Msa0772260-mRNA-1:three_prime_utr;Parent=Msa0772260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
