AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323790 MtrunA17_Chr2g0301081 98.473 262 4 0 1 262 1 262 0.0 526
Msa0323790 MtrunA17_Chr8g0345631 66.355 214 72 0 49 262 50 263 1.50e-103 302
Msa0323790 MtrunA17_Chr3g0092091 51.244 201 92 2 65 265 56 250 5.15e-67 209
Msa0323790 MtrunA17_Chr3g0133901 42.164 268 140 5 1 262 2 260 1.54e-57 185
Msa0323790 MtrunA17_Chr5g0448421 39.146 281 137 10 5 264 7 274 5.21e-51 168
Msa0323790 MtrunA17_Chr5g0448411 39.437 284 130 11 5 264 7 272 6.67e-51 168
Msa0323790 MtrunA17_Chr2g0279001 45.745 188 69 5 72 237 73 249 3.84e-40 140
Msa0323790 MtrunA17_Chr6g0462031 40.488 205 94 7 65 260 49 234 3.92e-39 137
Msa0323790 MtrunA17_Chr4g0006181 34.221 263 92 8 61 269 111 346 5.08e-37 134
Msa0323790 MtrunA17_Chr6g0453151 35.484 248 124 9 39 267 98 328 9.34e-34 125
Msa0323790 MtrunA17_Chr6g0453141 35.484 248 124 9 39 267 31 261 1.06e-33 123
Msa0323790 MtrunA17_Chr6g0476641 35.065 231 115 8 60 270 74 289 3.48e-33 122
Msa0323790 MtrunA17_Chr4g0051941 32.632 285 146 10 2 267 5 262 3.96e-33 122
Msa0323790 MtrunA17_Chr1g0157481 32.432 259 134 7 37 265 81 328 6.57e-33 122
Msa0323790 MtrunA17_Chr5g0447531 31.802 283 153 10 3 267 1 261 1.73e-32 120
Msa0323790 MtrunA17_Chr6g0453181 35.683 227 110 9 60 267 52 261 6.07e-32 118
Msa0323790 MtrunA17_Chr6g0453161 35.484 248 124 9 39 267 33 263 1.37e-31 122
Msa0323790 MtrunA17_Chr6g0453161 34.274 248 127 9 39 267 298 528 4.84e-30 118
Msa0323790 MtrunA17_Chr2g0318521 35.909 220 97 7 60 255 49 248 1.77e-30 114
Msa0323790 MtrunA17_Chr3g0113311 31.381 239 86 7 61 245 56 270 1.03e-23 97.1
Msa0323790 MtrunA17_Chr6g0464511 33.628 226 112 9 45 267 18 208 7.64e-21 87.8
Msa0323790 MtrunA17_Chr2g0296081 48.649 74 32 2 187 260 30 97 2.88e-14 67.4
Msa0323790 MtrunA17_Chr6g0453171 40.196 102 45 4 158 259 1 86 3.33e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323790 AT1G19150.1 73.494 249 64 1 19 267 24 270 3.22e-137 388
Msa0323790 AT3G61470.1 67.980 203 65 0 60 262 50 252 5.79e-101 295
Msa0323790 AT3G47470.1 45.022 231 121 2 35 265 27 251 8.03e-67 208
Msa0323790 AT1G45474.2 42.276 246 127 5 30 264 10 251 4.35e-55 178
Msa0323790 AT1G45474.1 42.276 246 127 5 30 264 10 251 4.35e-55 178
Msa0323790 AT1G61520.3 43.556 225 100 7 61 264 52 270 2.42e-50 167
Msa0323790 AT1G61520.1 43.556 225 100 7 61 264 52 270 2.42e-50 167
Msa0323790 AT1G61520.2 42.788 208 92 7 78 264 14 215 5.64e-43 146
Msa0323790 AT3G54890.1 42.439 205 90 7 65 260 48 233 9.19e-42 144
Msa0323790 AT1G15820.1 37.692 260 125 9 1 237 1 246 4.27e-40 140
Msa0323790 AT5G28450.1 62.245 98 37 0 165 262 71 168 1.30e-37 131
Msa0323790 AT2G05100.1 33.217 286 145 10 3 267 1 261 7.46e-35 126
Msa0323790 AT2G05070.1 36.726 226 109 8 60 267 52 261 1.74e-34 125
Msa0323790 AT5G01530.1 33.080 263 95 8 61 269 54 289 1.78e-34 126
Msa0323790 AT3G08940.2 31.438 299 120 10 28 269 16 286 6.03e-34 125
Msa0323790 AT4G10340.1 38.009 221 106 8 60 264 65 270 3.48e-33 122
Msa0323790 AT3G27690.1 35.398 226 112 8 60 267 53 262 3.90e-33 122
Msa0323790 AT3G27690.2 35.398 226 112 8 60 267 85 294 4.00e-33 123
Msa0323790 AT2G34430.1 36.150 213 105 6 71 267 65 262 5.70e-33 121
Msa0323790 AT2G34420.1 36.150 213 105 6 71 267 64 261 9.15e-33 121
Msa0323790 AT1G29930.1 36.697 218 106 7 66 267 62 263 1.09e-32 121
Msa0323790 AT1G76570.1 33.566 286 144 11 4 262 57 323 1.14e-32 122
Msa0323790 AT1G29920.1 36.697 218 106 7 66 267 62 263 1.20e-32 120
Msa0323790 AT1G29910.1 36.697 218 106 7 66 267 62 263 1.20e-32 120
Msa0323790 AT5G54270.1 36.816 201 95 6 72 255 64 249 5.61e-30 114
Msa0323790 AT3G54890.2 37.255 204 68 7 65 260 48 199 1.45e-27 105
Msa0323790 AT2G40100.1 32.231 242 85 8 61 248 55 271 2.99e-27 107
Msa0323790 AT3G54890.4 36.757 185 89 7 65 240 48 213 4.56e-27 104
Msa0323790 AT2G05100.2 32.296 257 128 10 3 238 1 232 3.04e-26 105
Msa0323790 AT3G54890.3 45.455 110 51 2 65 165 48 157 2.36e-20 85.9
Msa0323790 AT2G40100.2 33.600 125 34 2 61 142 55 173 1.21e-13 68.2
Msa0323790 AT3G08940.1 30.435 138 47 2 47 141 37 168 5.83e-13 67.0

Find 82 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTCAACTAGCCTTAA+TGG 0.175572 2_4:-28342294 Msa0323790:CDS
TGCAGCCTTCCAGGTGATTT+TGG 0.200012 2_4:-28342788 Msa0323790:intron
CTTCCCAATTGCAGCCTTCC+AGG 0.202623 2_4:-28342797 Msa0323790:intron
ATCACTTTATCTGTTATATA+TGG 0.237860 2_4:+28343468 None:intergenic
TACCTGCCATCAAGCCATTC+AGG 0.297044 2_4:+28343108 None:intergenic
GTTTGGCCTATTTGGTAACT+TGG 0.311362 2_4:+28342211 None:intergenic
GGGAACCACAATGGCCTATC+TGG 0.315426 2_4:+28343144 None:intergenic
ATTGTTCAACTAGCCTTAAT+GGG 0.341340 2_4:-28342293 Msa0323790:CDS
GGGTAACCAACATCTGGTTT+TGG 0.345083 2_4:+28342188 None:intergenic
ACCTTCAACCCAGCCCATTA+AGG 0.349312 2_4:+28342280 None:intergenic
CAGTGGCTGAATTTCTTACT+TGG 0.353646 2_4:+28343428 None:intergenic
CAGATCCAGAGTTACTAAAA+TGG 0.373832 2_4:-28342472 Msa0323790:CDS
AGGTTCACCTGAGCCTGTTA+TGG 0.381131 2_4:-28342129 Msa0323790:CDS
GCCTTAATGGGCTGGGTTGA+AGG 0.384860 2_4:-28342281 Msa0323790:CDS
ATGGCTCATCTTGCTGATCC+TGG 0.385502 2_4:-28342002 Msa0323790:CDS
TTAGTCCTCAAAACCATAAC+AGG 0.387512 2_4:+28342116 None:intergenic
TGGGCAATGTTAGGAGTATC+AGG 0.387629 2_4:-28342419 Msa0323790:CDS
TTGAGCCCAAGTTACCAAAT+AGG 0.388379 2_4:-28342217 Msa0323790:CDS
AGGACTAAGGAGATTAAGAA+TGG 0.401890 2_4:-28342101 Msa0323790:CDS
CATGCAAGATGGGCAATGTT+AGG 0.401951 2_4:-28342428 Msa0323790:CDS
CTGGTAGTTCACCTCCTGAA+TGG 0.410603 2_4:-28343122 Msa0323790:CDS
TCACCTCCTGAATGGCTTGA+TGG 0.411611 2_4:-28343114 Msa0323790:CDS
TAGTCCTATTGATAATTTGA+TGG 0.421103 2_4:-28342021 Msa0323790:CDS
TGATAATGAAGTGGAGGAAA+TGG 0.422619 2_4:+28343390 None:intergenic
TGAGCCATCAAATTATCAAT+AGG 0.426138 2_4:+28342017 None:intergenic
TTCAACTAGCCTTAATGGGC+TGG 0.428491 2_4:-28342289 Msa0323790:CDS
ATGCAGAGAAATAAGTCAAA+AGG 0.432712 2_4:-28343280 Msa0323790:intron
ACTACCCGGGTTAACGATAT+CGG 0.444821 2_4:+28342247 None:intergenic
TTGGTTACCCTGGTGGGCTA+TGG 0.449489 2_4:-28342175 Msa0323790:CDS
TCAACTAGCCTTAATGGGCT+GGG 0.462717 2_4:-28342288 Msa0323790:CDS
TTTGGCCTATTTGGTAACTT+GGG 0.471715 2_4:+28342212 None:intergenic
TATCTGTTATATATGGATGA+TGG 0.477805 2_4:+28343475 None:intergenic
GCTGGGTTGAAGGTCGAAGA+TGG 0.481490 2_4:-28342271 Msa0323790:CDS
CATTCAGGAGGTGAACTACC+AGG 0.483786 2_4:+28343123 None:intergenic
CTCCTGAATGGCTTGATGGC+AGG 0.485385 2_4:-28343110 Msa0323790:intron
GGATCAAACCATAGCCCACC+AGG 0.490806 2_4:+28342167 None:intergenic
CTCAAAACCATAACAGGCTC+AGG 0.491099 2_4:+28342122 None:intergenic
GATCCTATGCAGTGGGGAAG+AGG 0.491222 2_4:-28342149 Msa0323790:CDS
GCTGAATTTCTTACTTGGAG+TGG 0.494254 2_4:+28343433 None:intergenic
GATAGGCCATTGTGGTTCCC+TGG 0.495533 2_4:-28343141 Msa0323790:CDS
TGAACAATGAATAGTGTTGT+TGG 0.498011 2_4:+28342308 None:intergenic
AGGTTGTTGATGTTGTTCCT+TGG 0.502633 2_4:+28343250 None:intergenic
GTGAACCACTTCCTCCAGAT+AGG 0.506478 2_4:-28343158 Msa0323790:CDS
CCACCAGGGTAACCAACATC+TGG 0.511783 2_4:+28342182 None:intergenic
AGAACTAATGCATGCAAGAT+GGG 0.516375 2_4:-28342438 Msa0323790:CDS
CTGGGTTGAAGGTCGAAGAT+GGG 0.522025 2_4:-28342270 Msa0323790:CDS
CAGAACTAATGCATGCAAGA+TGG 0.524297 2_4:-28342439 Msa0323790:CDS
GGCTCAATATCAACACTACC+CGG 0.525605 2_4:+28342233 None:intergenic
AAATTCAGCCACTGCAGCAA+TGG 0.529791 2_4:-28343419 Msa0323790:exon
GAACAATGAATAGTGTTGTT+GGG 0.530037 2_4:+28342309 None:intergenic
GGACTAAGGAGATTAAGAAT+GGG 0.534450 2_4:-28342100 Msa0323790:CDS
AATGGCCTATCTGGAGGAAG+TGG 0.535116 2_4:+28343153 None:intergenic
GGCTAAAGCCATTGCTGCAG+TGG 0.535561 2_4:+28343411 None:intergenic
AACTTCTCATGGTACAATGC+AGG 0.549392 2_4:-28342353 Msa0323790:CDS
ATGGTTTGATCCTATGCAGT+GGG 0.554668 2_4:-28342156 Msa0323790:CDS
TGTTAAACACAAATAACACT+TGG 0.558210 2_4:+28340900 None:intergenic
TTTCAAGCTGTTTATGTTGG+GGG 0.563088 2_4:-28342044 Msa0323790:CDS
TCTTCTGCTGCTTAACCATG+AGG 0.568361 2_4:+28343230 None:intergenic
GAACCTCTTCCCCACTGCAT+AGG 0.570209 2_4:+28342146 None:intergenic
TTCCTCCAGATAGGCCATTG+TGG 0.574027 2_4:-28343149 Msa0323790:CDS
AAACCAGATGTTGGTTACCC+TGG 0.575868 2_4:-28342185 Msa0323790:CDS
GAGAAAATGTTGACATGACC+AGG 0.576450 2_4:+28341984 None:intergenic
TATGGTTTGATCCTATGCAG+TGG 0.581606 2_4:-28342157 Msa0323790:CDS
CAGATGTTGGTTACCCTGGT+GGG 0.584280 2_4:-28342181 Msa0323790:CDS
ATGGGCCGATATCGTTAACC+CGG 0.593103 2_4:-28342252 Msa0323790:CDS
CCAAACCCAAAACCAGATGT+TGG 0.602151 2_4:-28342194 Msa0323790:CDS
TGGAAAACTTGATAATGAAG+TGG 0.604478 2_4:+28343381 None:intergenic
GGGTCAAAACCAAAATCACC+TGG 0.604939 2_4:+28342779 None:intergenic
AAAACTTGATAATGAAGTGG+AGG 0.608373 2_4:+28343384 None:intergenic
CCAGATGTTGGTTACCCTGG+TGG 0.630637 2_4:-28342182 Msa0323790:CDS
CAAAACCAAAATCACCTGGA+AGG 0.631976 2_4:+28342783 None:intergenic
GAACAACATCAACAACCTCA+TGG 0.646836 2_4:-28343245 Msa0323790:CDS
AACCACAATGGCCTATCTGG+AGG 0.659675 2_4:+28343147 None:intergenic
AAGACATACCTAATCCAAGA+GGG 0.664832 2_4:+28342759 None:intergenic
ATTCAGGAGGTGAACTACCA+GGG 0.668133 2_4:+28343124 None:intergenic
GAACTACCAGGGAACCACAA+TGG 0.679112 2_4:+28343135 None:intergenic
TGGGCCGATATCGTTAACCC+GGG 0.686507 2_4:-28342251 Msa0323790:CDS
GCTCAATATCAACACTACCC+GGG 0.701726 2_4:+28342234 None:intergenic
CTGCCATCAAGCCATTCAGG+AGG 0.705497 2_4:+28343111 None:intergenic
GATCAAACCATAGCCCACCA+GGG 0.714446 2_4:+28342168 None:intergenic
GAAGACATACCTAATCCAAG+AGG 0.724614 2_4:+28342758 None:intergenic
TGGTTTGATCCTATGCAGTG+GGG 0.749765 2_4:-28342155 Msa0323790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTAATTTTGTTAA+TGG - chr2_4:28341301-28341320 Msa0323790:intron 10.0%
!! AAAATAAAATGGAAATAAAA+AGG + chr2_4:28341524-28341543 None:intergenic 10.0%
!!! TTCCATTTTATTTTATATTT+TGG - chr2_4:28341530-28341549 Msa0323790:intron 10.0%
!! TTCCAAAATATAAAATAAAA+TGG + chr2_4:28341535-28341554 None:intergenic 10.0%
!! AATAATAAGTTAAAAAGAGT+TGG + chr2_4:28341037-28341056 None:intergenic 15.0%
!!! AATTTTGTTAATGGAAAATT+TGG - chr2_4:28341310-28341329 Msa0323790:intron 15.0%
!! CAAAATATAAAATGATGATA+AGG + chr2_4:28341563-28341582 None:intergenic 15.0%
!!! TTATTTTCTCAAATTATTAC+CGG - chr2_4:28341797-28341816 Msa0323790:intron 15.0%
!! ATCACTTTATCTGTTATATA+TGG + chr2_4:28340920-28340939 None:intergenic 20.0%
!! ACAATTAGAAATGCAAAAAA+AGG - chr2_4:28341190-28341209 Msa0323790:intron 20.0%
!!! GTTTTTACTTTCGTTTTATT+TGG - chr2_4:28341373-28341392 Msa0323790:intron 20.0%
!!! ATTTTGTTATTCTTATGGAA+AGG + chr2_4:28341652-28341671 None:intergenic 20.0%
!!! GTAACATTTTGTTATTCTTA+TGG + chr2_4:28341657-28341676 None:intergenic 20.0%
!! TATGTTTATTAGTTACTTAG+TGG + chr2_4:28341873-28341892 None:intergenic 20.0%
!!! TTTTTTGAGCAAAATAATCT+AGG - chr2_4:28342691-28342710 Msa0323790:intron 20.0%
!! TTTCCTAATTACAAATTACA+GGG + chr2_4:28343170-28343189 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG - chr2_4:28343336-28343355 Msa0323790:intron 20.0%
! TATCTGTTATATATGGATGA+TGG + chr2_4:28340913-28340932 None:intergenic 25.0%
! GATATTTACTCTTTAGCATT+TGG + chr2_4:28341448-28341467 None:intergenic 25.0%
! AGTAAAAACAACATCATAGT+GGG + chr2_4:28341483-28341502 None:intergenic 25.0%
! AAGTAAAAACAACATCATAG+TGG + chr2_4:28341484-28341503 None:intergenic 25.0%
! ACATATGAATTAATCCTTTC+AGG - chr2_4:28341888-28341907 Msa0323790:intron 25.0%
! CATATGAATTAATCCTTTCA+GGG - chr2_4:28341889-28341908 Msa0323790:intron 25.0%
!! TAGTCCTATTGATAATTTGA+TGG - chr2_4:28342364-28342383 Msa0323790:CDS 25.0%
!!! TTTTAACTCATTATATGACG+TGG - chr2_4:28342511-28342530 Msa0323790:intron 25.0%
! GTTATATATTGGAGTTTAGT+TGG + chr2_4:28342572-28342591 None:intergenic 25.0%
! TAAACTCCAATATATAACAG+AGG - chr2_4:28342574-28342593 Msa0323790:intron 25.0%
! AAAATTCATGTAGCTTCTAT+TGG + chr2_4:28342782-28342801 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG - chr2_4:28342790-28342809 Msa0323790:intron 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG - chr2_4:28342796-28342815 Msa0323790:intron 25.0%
!! TTTCCCTGTAATTTGTAATT+AGG - chr2_4:28343164-28343183 Msa0323790:CDS 25.0%
! CTTTCCTAATTACAAATTAC+AGG + chr2_4:28343171-28343190 None:intergenic 25.0%
!! AAAACTTGATAATGAAGTGG+AGG + chr2_4:28341004-28341023 None:intergenic 30.0%
!! TGGAAAACTTGATAATGAAG+TGG + chr2_4:28341007-28341026 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG - chr2_4:28341010-28341029 Msa0323790:intron 30.0%
ATGCAGAGAAATAAGTCAAA+AGG - chr2_4:28341105-28341124 Msa0323790:intron 30.0%
! TGTCTTCAATATGAAGTGTT+GGG + chr2_4:28341706-28341725 None:intergenic 30.0%
ATGTCTTCAATATGAAGTGT+TGG + chr2_4:28341707-28341726 None:intergenic 30.0%
!!! CCAAGTTTTTCAAGTATTTC+TGG + chr2_4:28342002-28342021 None:intergenic 30.0%
CCAGAAATACTTGAAAAACT+TGG - chr2_4:28341999-28342018 Msa0323790:CDS 30.0%
GTTATGTCAAAAACTTCTCA+TGG - chr2_4:28342021-28342040 Msa0323790:CDS 30.0%
! GAACAATGAATAGTGTTGTT+GGG + chr2_4:28342079-28342098 None:intergenic 30.0%
TGAACAATGAATAGTGTTGT+TGG + chr2_4:28342080-28342099 None:intergenic 30.0%
!! ATTGTTCAACTAGCCTTAAT+GGG - chr2_4:28342092-28342111 Msa0323790:CDS 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG - chr2_4:28342338-28342357 Msa0323790:CDS 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG - chr2_4:28342339-28342358 Msa0323790:CDS 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG - chr2_4:28342340-28342359 Msa0323790:CDS 30.0%
TGAGCCATCAAATTATCAAT+AGG + chr2_4:28342371-28342390 None:intergenic 30.0%
CATCATTAAATGCATGTGTA+AGG + chr2_4:28342490-28342509 None:intergenic 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG - chr2_4:28342795-28342814 Msa0323790:intron 30.0%
AAACAATATGCACACTAACT+AGG - chr2_4:28342870-28342889 Msa0323790:intron 30.0%
AGCGCATTACATGTAAATAA+TGG + chr2_4:28343071-28343090 None:intergenic 30.0%
CTTGTGTCAATTGTAAAACT+CGG + chr2_4:28343101-28343120 None:intergenic 30.0%
AGTTGTGGTTTATTGAAGTT+CGG + chr2_4:28343425-28343444 None:intergenic 30.0%
! TGATAATGAAGTGGAGGAAA+TGG + chr2_4:28340998-28341017 None:intergenic 35.0%
TAAAAAGAGTTGGACCTGTT+TGG + chr2_4:28341027-28341046 None:intergenic 35.0%
! AGTCAAAAGGTTTTACACCA+AGG - chr2_4:28341118-28341137 Msa0323790:intron 35.0%
! ACTCTTTAGCATTTGGTTCA+GGG + chr2_4:28341441-28341460 None:intergenic 35.0%
! TACTCTTTAGCATTTGGTTC+AGG + chr2_4:28341442-28341461 None:intergenic 35.0%
AAGACATACCTAATCCAAGA+GGG + chr2_4:28341629-28341648 None:intergenic 35.0%
CTTCATATTGAAGACATGTC+CGG - chr2_4:28341710-28341729 Msa0323790:intron 35.0%
CAGATCCAGAGTTACTAAAA+TGG - chr2_4:28341913-28341932 Msa0323790:intron 35.0%
!! GCTAACCATTTTAGTAACTC+TGG + chr2_4:28341921-28341940 None:intergenic 35.0%
AGAACTAATGCATGCAAGAT+GGG - chr2_4:28341947-28341966 Msa0323790:intron 35.0%
!! CATTGTTCAACTAGCCTTAA+TGG - chr2_4:28342091-28342110 Msa0323790:CDS 35.0%
! TTTGGCCTATTTGGTAACTT+GGG + chr2_4:28342176-28342195 None:intergenic 35.0%
TTAGTCCTCAAAACCATAAC+AGG + chr2_4:28342272-28342291 None:intergenic 35.0%
!!! TGTTATGGTTTTGAGGACTA+AGG - chr2_4:28342271-28342290 Msa0323790:CDS 35.0%
AGGACTAAGGAGATTAAGAA+TGG - chr2_4:28342284-28342303 Msa0323790:CDS 35.0%
GGACTAAGGAGATTAAGAAT+GGG - chr2_4:28342285-28342304 Msa0323790:CDS 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG - chr2_4:28342312-28342331 Msa0323790:CDS 35.0%
TTTCAAGCTGTTTATGTTGG+GGG - chr2_4:28342341-28342360 Msa0323790:CDS 35.0%
! TGGTCATGTCAACATTTTCT+CGG - chr2_4:28342403-28342422 Msa0323790:CDS 35.0%
GGATCACCTCTGTTATATAT+TGG + chr2_4:28342583-28342602 None:intergenic 35.0%
! GCTTCTATTGGAAATGGATT+AGG + chr2_4:28342770-28342789 None:intergenic 35.0%
CATGTAGCTTCTATTGGAAA+TGG + chr2_4:28342776-28342795 None:intergenic 35.0%
ACAAATCAATGTTTCGATCC+TGG - chr2_4:28342913-28342932 Msa0323790:intron 35.0%
ATAGGGTTTAACTGATGCAA+AGG + chr2_4:28343231-28343250 None:intergenic 35.0%
GTTCGTATTAGTGCTTCATA+GGG + chr2_4:28343248-28343267 None:intergenic 35.0%
TGTTCGTATTAGTGCTTCAT+AGG + chr2_4:28343249-28343268 None:intergenic 35.0%
! ATGAAGCACTAATACGAACA+CGG - chr2_4:28343249-28343268 Msa0323790:CDS 35.0%
GAACTTCAATAAACCACAAC+TGG - chr2_4:28343424-28343443 Msa0323790:five_prime_UTR 35.0%
AGAAAAACAAAAGCCAGTTG+TGG + chr2_4:28343440-28343459 None:intergenic 35.0%
GCTGAATTTCTTACTTGGAG+TGG + chr2_4:28340955-28340974 None:intergenic 40.0%
CAGTGGCTGAATTTCTTACT+TGG + chr2_4:28340960-28340979 None:intergenic 40.0%
AGGTTGTTGATGTTGTTCCT+TGG + chr2_4:28341138-28341157 None:intergenic 40.0%
GAACAACATCAACAACCTCA+TGG - chr2_4:28341140-28341159 Msa0323790:intron 40.0%
!! TGATTTCTAGTCAATGCGTG+CGG + chr2_4:28341416-28341435 None:intergenic 40.0%
CAAAACCAAAATCACCTGGA+AGG + chr2_4:28341605-28341624 None:intergenic 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG - chr2_4:28341612-28341631 Msa0323790:intron 40.0%
GAAGACATACCTAATCCAAG+AGG + chr2_4:28341630-28341649 None:intergenic 40.0%
TGTTACGTTGTACGATGTGT+TGG - chr2_4:28341671-28341690 Msa0323790:intron 40.0%
GATATGTATCAGACAGACAC+CGG + chr2_4:28341732-28341751 None:intergenic 40.0%
TGATACTGACACATAGTCAC+CGG + chr2_4:28341819-28341838 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG - chr2_4:28341946-28341965 Msa0323790:intron 40.0%
AACTTCTCATGGTACAATGC+AGG - chr2_4:28342032-28342051 Msa0323790:CDS 40.0%
TTGAGCCCAAGTTACCAAAT+AGG - chr2_4:28342168-28342187 Msa0323790:CDS 40.0%
! GTTTGGCCTATTTGGTAACT+TGG + chr2_4:28342177-28342196 None:intergenic 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG + chr2_4:28342199-28342218 None:intergenic 40.0%
TATGGTTTGATCCTATGCAG+TGG - chr2_4:28342228-28342247 Msa0323790:CDS 40.0%
ATGGTTTGATCCTATGCAGT+GGG - chr2_4:28342229-28342248 Msa0323790:CDS 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG - chr2_4:28342311-28342330 Msa0323790:CDS 40.0%
GAGAAAATGTTGACATGACC+AGG + chr2_4:28342404-28342423 None:intergenic 40.0%
ATGACGTGGTAACACATCAT+TGG - chr2_4:28342525-28342544 Msa0323790:intron 40.0%
!! TCATGCCTTACTGTTTTGAG+CGG - chr2_4:28342616-28342635 Msa0323790:intron 40.0%
!! ACATTGATTTGTCGCGTTGT+GGG + chr2_4:28342905-28342924 None:intergenic 40.0%
!! AACATTGATTTGTCGCGTTG+TGG + chr2_4:28342906-28342925 None:intergenic 40.0%
! ACAGAAGTTTTTGCTTGTGC+AGG - chr2_4:28342970-28342989 Msa0323790:intron 40.0%
AATGATCCTGCATAATGCTG+TGG - chr2_4:28343036-28343055 Msa0323790:intron 40.0%
TTTCTACCACAGCATTATGC+AGG + chr2_4:28343045-28343064 None:intergenic 40.0%
AAATTCAGCCACTGCAGCAA+TGG - chr2_4:28340966-28340985 Msa0323790:intron 45.0%
! TCTTCTGCTGCTTAACCATG+AGG + chr2_4:28341158-28341177 None:intergenic 45.0%
ATTCAGGAGGTGAACTACCA+GGG + chr2_4:28341264-28341283 None:intergenic 45.0%
! ACATCATAGTGGGACACAAG+TGG + chr2_4:28341473-28341492 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+TGG + chr2_4:28341609-28341628 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG - chr2_4:28341618-28341637 Msa0323790:intron 45.0%
CATGCAAGATGGGCAATGTT+AGG - chr2_4:28341957-28341976 Msa0323790:intron 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG - chr2_4:28341966-28341985 Msa0323790:intron 45.0%
!! TTCAACTAGCCTTAATGGGC+TGG - chr2_4:28342096-28342115 Msa0323790:CDS 45.0%
!! TCAACTAGCCTTAATGGGCT+GGG - chr2_4:28342097-28342116 Msa0323790:CDS 45.0%
ACTACCCGGGTTAACGATAT+CGG + chr2_4:28342141-28342160 None:intergenic 45.0%
GCTCAATATCAACACTACCC+GGG + chr2_4:28342154-28342173 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG + chr2_4:28342155-28342174 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG + chr2_4:28342185-28342204 None:intergenic 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG + chr2_4:28342194-28342213 None:intergenic 45.0%
CCAAACCCAAAACCAGATGT+TGG - chr2_4:28342191-28342210 Msa0323790:CDS 45.0%
!! GGGTAACCAACATCTGGTTT+TGG + chr2_4:28342200-28342219 None:intergenic 45.0%
! AAACCAGATGTTGGTTACCC+TGG - chr2_4:28342200-28342219 Msa0323790:CDS 45.0%
TGGTTTGATCCTATGCAGTG+GGG - chr2_4:28342230-28342249 Msa0323790:CDS 45.0%
CTCAAAACCATAACAGGCTC+AGG + chr2_4:28342266-28342285 None:intergenic 45.0%
!! CTGAGCCTGTTATGGTTTTG+AGG - chr2_4:28342264-28342283 Msa0323790:CDS 45.0%
TCTCTCCGCTCAAAACAGTA+AGG + chr2_4:28342624-28342643 None:intergenic 45.0%
ACTTCTAACATGTCTCAGCC+AGG + chr2_4:28342934-28342953 None:intergenic 45.0%
TTGTGCAGGCTTTCACTTCA+GGG - chr2_4:28342984-28343003 Msa0323790:intron 45.0%
TTCACTTCAGGGTAGTGCTA+TGG - chr2_4:28342995-28343014 Msa0323790:intron 45.0%
ACTAATACGAACACGGACAC+CGG - chr2_4:28343256-28343275 Msa0323790:CDS 45.0%
!! TATATGTGTCGGTGTCGTGT+TGG - chr2_4:28343347-28343366 Msa0323790:intron 45.0%
GTGAACCACTTCCTCCAGAT+AGG - chr2_4:28341227-28341246 Msa0323790:intron 50.0%
AATGGCCTATCTGGAGGAAG+TGG + chr2_4:28341235-28341254 None:intergenic 50.0%
TTCCTCCAGATAGGCCATTG+TGG - chr2_4:28341236-28341255 Msa0323790:intron 50.0%
AACCACAATGGCCTATCTGG+AGG + chr2_4:28341241-28341260 None:intergenic 50.0%
GAACTACCAGGGAACCACAA+TGG + chr2_4:28341253-28341272 None:intergenic 50.0%
CATTCAGGAGGTGAACTACC+AGG + chr2_4:28341265-28341284 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG - chr2_4:28341263-28341282 Msa0323790:intron 50.0%
TCACCTCCTGAATGGCTTGA+TGG - chr2_4:28341271-28341290 Msa0323790:intron 50.0%
TACCTGCCATCAAGCCATTC+AGG + chr2_4:28341280-28341299 None:intergenic 50.0%
! ATGCGTGCGGAGGATACTTT+TGG + chr2_4:28341403-28341422 None:intergenic 50.0%
! TTTCTAGTCAATGCGTGCGG+AGG + chr2_4:28341413-28341432 None:intergenic 50.0%
GAAGGCTGCAATTGGGAAGA+AGG + chr2_4:28341587-28341606 None:intergenic 50.0%
TCACCTGGAAGGCTGCAATT+GGG + chr2_4:28341594-28341613 None:intergenic 50.0%
ATCACCTGGAAGGCTGCAAT+TGG + chr2_4:28341595-28341614 None:intergenic 50.0%
! TGCAGCCTTCCAGGTGATTT+TGG - chr2_4:28341597-28341616 Msa0323790:intron 50.0%
GTGTCAGTATCACGTCGTGT+TGG - chr2_4:28341827-28341846 Msa0323790:intron 50.0%
ACTCTGGATCTGACCCTGAA+AGG + chr2_4:28341905-28341924 None:intergenic 50.0%
ACCTTCAACCCAGCCCATTA+AGG + chr2_4:28342108-28342127 None:intergenic 50.0%
! CTGGGTTGAAGGTCGAAGAT+GGG - chr2_4:28342115-28342134 Msa0323790:CDS 50.0%
ATGGGCCGATATCGTTAACC+CGG - chr2_4:28342133-28342152 Msa0323790:CDS 50.0%
! CAGATGTTGGTTACCCTGGT+GGG - chr2_4:28342204-28342223 Msa0323790:CDS 50.0%
GATCAAACCATAGCCCACCA+GGG + chr2_4:28342220-28342239 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTTA+TGG - chr2_4:28342256-28342275 Msa0323790:CDS 50.0%
ATGGCTCATCTTGCTGATCC+TGG - chr2_4:28342383-28342402 Msa0323790:CDS 50.0%
AGGCATGACGCATGAGTACA+TGG + chr2_4:28342604-28342623 None:intergenic 50.0%
!! TTGATTTGTCGCGTTGTGGG+AGG + chr2_4:28342902-28342921 None:intergenic 50.0%
CTTGTGCAGGCTTTCACTTC+AGG - chr2_4:28342983-28343002 Msa0323790:intron 50.0%
!! TGTCGGTGTCGTGTTGGTAT+CGG - chr2_4:28343353-28343372 Msa0323790:intron 50.0%
CATTAGACGTGTCCCAGTGT+CGG + chr2_4:28343392-28343411 None:intergenic 50.0%
GGCTAAAGCCATTGCTGCAG+TGG + chr2_4:28340977-28340996 None:intergenic 55.0%
GGGAACCACAATGGCCTATC+TGG + chr2_4:28341244-28341263 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG - chr2_4:28341244-28341263 Msa0323790:intron 55.0%
CTGCCATCAAGCCATTCAGG+AGG + chr2_4:28341277-28341296 None:intergenic 55.0%
! CTCCTGAATGGCTTGATGGC+AGG - chr2_4:28341275-28341294 Msa0323790:intron 55.0%
CTTCCCAATTGCAGCCTTCC+AGG - chr2_4:28341588-28341607 Msa0323790:intron 55.0%
!! GCCTTAATGGGCTGGGTTGA+AGG - chr2_4:28342104-28342123 Msa0323790:CDS 55.0%
! GCTGGGTTGAAGGTCGAAGA+TGG - chr2_4:28342114-28342133 Msa0323790:CDS 55.0%
TGGGCCGATATCGTTAACCC+GGG - chr2_4:28342134-28342153 Msa0323790:CDS 55.0%
CCACCAGGGTAACCAACATC+TGG + chr2_4:28342206-28342225 None:intergenic 55.0%
! CCAGATGTTGGTTACCCTGG+TGG - chr2_4:28342203-28342222 Msa0323790:CDS 55.0%
!! TTGGTTACCCTGGTGGGCTA+TGG - chr2_4:28342210-28342229 Msa0323790:CDS 55.0%
GGATCAAACCATAGCCCACC+AGG + chr2_4:28342221-28342240 None:intergenic 55.0%
GATCCTATGCAGTGGGGAAG+AGG - chr2_4:28342236-28342255 Msa0323790:CDS 55.0%
GAACCTCTTCCCCACTGCAT+AGG + chr2_4:28342242-28342261 None:intergenic 55.0%
GTTAGTGTCCGTGTCGTGTC+CGG + chr2_4:28343278-28343297 None:intergenic 55.0%
AGACGACACATGTCCGACAC+TGG - chr2_4:28343376-28343395 Msa0323790:CDS 55.0%
GACGACACATGTCCGACACT+GGG - chr2_4:28343377-28343396 Msa0323790:CDS 55.0%
ACTGGGACACGTCTAATGCG+AGG - chr2_4:28343394-28343413 Msa0323790:CDS 55.0%
CACGGACACCGGACACGACA+CGG - chr2_4:28343267-28343286 Msa0323790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 28340902 28343505 28340902 ID=Msa0323790;Name=Msa0323790
chr2_4 mRNA 28340902 28343505 28340902 ID=Msa0323790-mRNA-1;Parent=Msa0323790;Name=Msa0323790-mRNA-1;_AED=0.20;_eAED=0.23;_QI=83|0.75|0.8|1|1|1|5|0|273
chr2_4 exon 28340902 28340937 28340902 ID=Msa0323790-mRNA-1:exon:9763;Parent=Msa0323790-mRNA-1
chr2_4 exon 28341983 28342497 28341983 ID=Msa0323790-mRNA-1:exon:9762;Parent=Msa0323790-mRNA-1
chr2_4 exon 28342768 28342805 28342768 ID=Msa0323790-mRNA-1:exon:9761;Parent=Msa0323790-mRNA-1
chr2_4 exon 28343111 28343296 28343111 ID=Msa0323790-mRNA-1:exon:9760;Parent=Msa0323790-mRNA-1
chr2_4 exon 28343376 28343505 28343376 ID=Msa0323790-mRNA-1:exon:9759;Parent=Msa0323790-mRNA-1
chr2_4 five_prime_UTR 28343423 28343505 28343423 ID=Msa0323790-mRNA-1:five_prime_utr;Parent=Msa0323790-mRNA-1
chr2_4 CDS 28343376 28343422 28343376 ID=Msa0323790-mRNA-1:cds;Parent=Msa0323790-mRNA-1
chr2_4 CDS 28343111 28343296 28343111 ID=Msa0323790-mRNA-1:cds;Parent=Msa0323790-mRNA-1
chr2_4 CDS 28342768 28342805 28342768 ID=Msa0323790-mRNA-1:cds;Parent=Msa0323790-mRNA-1
chr2_4 CDS 28341983 28342497 28341983 ID=Msa0323790-mRNA-1:cds;Parent=Msa0323790-mRNA-1
chr2_4 CDS 28340902 28340937 28340902 ID=Msa0323790-mRNA-1:cds;Parent=Msa0323790-mRNA-1
Gene Sequence

>Msa0323790

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGAGAAATAAGTCAAAAGGTTTTACACCAAGGAACAACATCAACAACCTCATGGTTAAGCAGCAGAAGAAGAAGAACACTTACAATTAGAAATGCAAAAAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGCCTTCCAGGTGATTTTGGTTTTGACCCTCTTGGATTAGGGTCAGATCCAGAGTTACTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAACTTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGTTCAGTAGAGTATTTTGCAGACCCAACAACACTATTCATTGTTCAACTAGCCTTAATGGGCTGGGTTGAAGGTCGAAGATGGGCCGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCCAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGTGGGCTATGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTTATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCTGGTCATGTCAACATTTTCTCGAATGTTGATGATTATCCAAGTGTTATTTGTGTTTAA

Protein sequence

>Msa0323790

MALAISSTSLSSFPNREISQKVLHQGTTSTTSWLSSRRRRTLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKLGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSNVDDYPSVICV*