AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0484890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484890 MtrunA17_Chr1g0212681 89.773 88 9 0 1 88 1 88 1.04e-51 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 40 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATAATTTAGCTCAATT+TGG 0.212491 3_4:-2382204 None:intergenic
TTTCGCCTTGTTTCCTTGTT+GGG 0.308254 3_4:-2382090 None:intergenic
GGTCTTAAAGGAAGGTTGTT+AGG 0.346156 3_4:+2381886 Msa0484890:intron
GTTTCGCCTTGTTTCCTTGT+TGG 0.354377 3_4:-2382091 None:intergenic
CACATTCAAATCATTTGCTT+CGG 0.366493 3_4:+2377136 Msa0484890:CDS
AACTCTAGGATTGTATTTCC+TGG 0.377706 3_4:-2382123 None:intergenic
TTTCTTCTTGCTCTTTAACC+TGG 0.402638 3_4:+2376987 Msa0484890:CDS
AGACCACTGCTGTTGGGTAT+AGG 0.414717 3_4:+2377396 Msa0484890:CDS
AAATCATGAACACACCTTAT+GGG 0.424094 3_4:-2377026 None:intergenic
CCAACAGCAGTGGTCTTCTC+TGG 0.449995 3_4:-2377389 None:intergenic
TATACCACTCTTCACCACTA+TGG 0.462456 3_4:+2376961 Msa0484890:exon
GTGATGTGGCTAGGAGTTTG+TGG 0.466897 3_4:-2376878 None:intergenic
TCAGCTAAGAGTGAATTTGC+TGG 0.472513 3_4:-2377441 None:intergenic
CAGAGAAGACCACTGCTGTT+GGG 0.485011 3_4:+2377390 Msa0484890:CDS
GTAAAATAAACAAAATCAAG+AGG 0.491628 3_4:+2382159 Msa0484890:CDS
GGAAGTTGTTTCCATTGCAC+AGG 0.494117 3_4:-2377190 None:intergenic
TTCGCCTTGTTTCCTTGTTG+GGG 0.498694 3_4:-2382089 None:intergenic
TAGGCTCTTACTTTCTGTAC+TGG 0.501571 3_4:-2377211 None:intergenic
TTCATCCTACTTATCCCATA+AGG 0.512519 3_4:+2377012 Msa0484890:CDS
GTTACCTTTAAAACAGATTG+TGG 0.513189 3_4:-2381916 None:intergenic
TTAGACCTTGTGATGTGGCT+AGG 0.516779 3_4:-2376887 None:intergenic
CCAGAGAAGACCACTGCTGT+TGG 0.535568 3_4:+2377389 Msa0484890:CDS
TTTGTGCAGGTCTTAAAGGA+AGG 0.548056 3_4:+2381878 Msa0484890:intron
TAACAATGTCTCCTGTGCAA+TGG 0.557348 3_4:+2377179 Msa0484890:CDS
ACACACCTTATGGGATAAGT+AGG 0.562591 3_4:-2377017 None:intergenic
AGGCGAAACTAAAAGCCTCC+AGG 0.576520 3_4:+2382105 Msa0484890:CDS
CGAAGCAAATGATTTGAATG+TGG 0.577902 3_4:-2377135 None:intergenic
TAGCTCAATTTGGATCGTTG+CGG 0.582784 3_4:-2382194 None:intergenic
GCAAATTCACTCTTAGCTGA+AGG 0.591604 3_4:+2377444 Msa0484890:CDS
GGATAAGTAGGATGAAGTCC+AGG 0.607100 3_4:-2377005 None:intergenic
GCAAGAAGAAACTACCATAG+TGG 0.608868 3_4:-2376975 None:intergenic
TAAAATAAACAAAATCAAGA+GGG 0.611854 3_4:+2382160 Msa0484890:CDS
AGATGGAAAGAAATAGTGAG+TGG 0.619866 3_4:-2376924 None:intergenic
AAACTCCTAGCCACATCACA+AGG 0.625733 3_4:+2376882 Msa0484890:five_prime_UTR
AGAATTTAGACCTTGTGATG+TGG 0.627994 3_4:-2376892 None:intergenic
TCTAGGATTGTATTTCCTGG+AGG 0.630928 3_4:-2382120 None:intergenic
AAGACCCCAACAAGGAAACA+AGG 0.652421 3_4:+2382085 Msa0484890:CDS
ACTACCATAGTGGTGAAGAG+TGG 0.666095 3_4:-2376965 None:intergenic
GCTCCTATACCCAACAGCAG+TGG 0.673108 3_4:-2377399 None:intergenic
CAGGTTCAAAGACCCCAACA+AGG 0.686042 3_4:+2382077 Msa0484890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAATTAAATTAATA+AGG + chr3_4:2378690-2378709 Msa0484890:intron 0.0%
!! TAAATATAAAATGACATAAA+AGG + chr3_4:2378311-2378330 Msa0484890:intron 10.0%
!! TAAATTAATAAGGTTAAAAT+TGG + chr3_4:2378700-2378719 Msa0484890:intron 10.0%
!!! TTTAATAAATTAGATTTTGA+TGG + chr3_4:2379531-2379550 Msa0484890:intron 10.0%
!!! AAAAGATTTTATGAATTTTA+AGG - chr3_4:2379918-2379937 None:intergenic 10.0%
!! AAAAAAAAAAGTTCTTAATA+TGG + chr3_4:2380157-2380176 Msa0484890:intron 10.0%
!!! CTCTAAAATTTGTAATTTAT+AGG - chr3_4:2377980-2377999 None:intergenic 15.0%
!!! TAAATTACAAATTTTAGAGA+AGG + chr3_4:2377981-2378000 Msa0484890:intron 15.0%
!!! ATTTAAGTTTGTATGAATAA+AGG + chr3_4:2378041-2378060 Msa0484890:intron 15.0%
!!! ATAAAGTACATTTATCATTT+TGG - chr3_4:2378441-2378460 None:intergenic 15.0%
!!! CTATAGGTTATATAAATTTT+GGG - chr3_4:2379070-2379089 None:intergenic 15.0%
!!! AAGATTTTAAAGGATTTTAA+AGG - chr3_4:2379963-2379982 None:intergenic 15.0%
!!! TTTACATCATAAGATTTTAA+AGG - chr3_4:2379973-2379992 None:intergenic 15.0%
!!! AAGATTTTAAAAGATTTTGT+AGG - chr3_4:2380057-2380076 None:intergenic 15.0%
!!! TTATATCATACATTAGTTTT+GGG - chr3_4:2381149-2381168 None:intergenic 15.0%
!!! ATTATATCATACATTAGTTT+TGG - chr3_4:2381150-2381169 None:intergenic 15.0%
!! AAAACTAATGTATGATATAA+TGG + chr3_4:2381149-2381168 Msa0484890:intron 15.0%
!! AAACTAATGTATGATATAAT+GGG + chr3_4:2381150-2381169 Msa0484890:intron 15.0%
!!! ATTTTCCTAAAATATAACAA+TGG - chr3_4:2381228-2381247 None:intergenic 15.0%
!!! TCAAAATTTTGTTCTTTTAA+TGG + chr3_4:2381452-2381471 Msa0484890:intron 15.0%
!! TAAAATAAACAAAATCAAGA+GGG + chr3_4:2382160-2382179 Msa0484890:CDS 15.0%
!! TTCATAATAACATCTTTGTT+TGG + chr3_4:2377469-2377488 Msa0484890:intron 20.0%
!!! ATTTTCTCTTGTGTAAAATA+CGG - chr3_4:2377799-2377818 None:intergenic 20.0%
!! GATATATCAAGTTTAACATT+TGG + chr3_4:2377862-2377881 Msa0484890:intron 20.0%
!!! TTTTTATATCCCTTTTTTAC+GGG - chr3_4:2378600-2378619 None:intergenic 20.0%
!!! GTTTTTATATCCCTTTTTTA+CGG - chr3_4:2378601-2378620 None:intergenic 20.0%
!! CTATTAATTATGCAAATTCT+AGG - chr3_4:2379008-2379027 None:intergenic 20.0%
!!! GCTATAGGTTATATAAATTT+TGG - chr3_4:2379071-2379090 None:intergenic 20.0%
!! TAAATTATGAAAAAGTCTTG+TGG + chr3_4:2379351-2379370 Msa0484890:intron 20.0%
!! CAAAATCATTCAAATTTCAA+AGG + chr3_4:2379504-2379523 Msa0484890:intron 20.0%
!!! AAGGATTTTAAAGGATTTTA+TGG - chr3_4:2379954-2379973 None:intergenic 20.0%
!!! ATTTTCAATTTGGATTTCAA+TGG - chr3_4:2379997-2380016 None:intergenic 20.0%
!! AGAATATTGATACTATAACT+TGG - chr3_4:2380465-2380484 None:intergenic 20.0%
!! TTAAATAATTCCTAAACTGA+TGG + chr3_4:2381024-2381043 Msa0484890:intron 20.0%
!! AACTAATGTATGATATAATG+GGG + chr3_4:2381151-2381170 Msa0484890:intron 20.0%
!!! CTTAACCATTGTTATATTTT+AGG + chr3_4:2381220-2381239 Msa0484890:intron 20.0%
!! TTGTACTAAAACAATATCTA+CGG + chr3_4:2381254-2381273 Msa0484890:intron 20.0%
!!! TCTTGTTTTTACAAAGTATT+CGG - chr3_4:2381630-2381649 None:intergenic 20.0%
!!! AAGGTAATGAGAAAATATTT+TGG + chr3_4:2381747-2381766 Msa0484890:intron 20.0%
!!! AGGTAATGAGAAAATATTTT+GGG + chr3_4:2381748-2381767 Msa0484890:intron 20.0%
!! TTGTTATATTCATAAAGAAC+CGG + chr3_4:2381975-2381994 Msa0484890:intron 20.0%
!! ATAAATTGTAAATAGCATCT+AGG - chr3_4:2382015-2382034 None:intergenic 20.0%
!! GTAAAATAAACAAAATCAAG+AGG + chr3_4:2382159-2382178 Msa0484890:CDS 20.0%
!! TCTGGTATTTCTACAAAAAA+AGG - chr3_4:2377544-2377563 None:intergenic 25.0%
!! ATTTGCTAGTTCTCAATATT+TGG - chr3_4:2377707-2377726 None:intergenic 25.0%
!! ATAAGATCCAAGAAAGTATA+AGG + chr3_4:2377926-2377945 Msa0484890:intron 25.0%
!! TAAGATCCAAGAAAGTATAA+GGG + chr3_4:2377927-2377946 Msa0484890:intron 25.0%
! AAGGAACATGATCTTAATTT+AGG + chr3_4:2378000-2378019 Msa0484890:intron 25.0%
! AGTTTGTATGAATAAAGGAA+AGG + chr3_4:2378046-2378065 Msa0484890:intron 25.0%
! GTTTGTATGAATAAAGGAAA+GGG + chr3_4:2378047-2378066 Msa0484890:intron 25.0%
! TTTGTATGAATAAAGGAAAG+GGG + chr3_4:2378048-2378067 Msa0484890:intron 25.0%
! AACAAAGAAAGATCAAACTA+AGG + chr3_4:2378143-2378162 Msa0484890:intron 25.0%
! ACAAAGAAAGATCAAACTAA+GGG + chr3_4:2378144-2378163 Msa0484890:intron 25.0%
!!! TTTTATATCCCTTTTTTACG+GGG - chr3_4:2378599-2378618 None:intergenic 25.0%
!! TTGATATGACTTTCTTTTAG+TGG - chr3_4:2378626-2378645 None:intergenic 25.0%
! TAATTATGCAAATTCTAGGT+TGG - chr3_4:2379004-2379023 None:intergenic 25.0%
! ATTAATAGCTATTGAACTTG+AGG + chr3_4:2379020-2379039 Msa0484890:intron 25.0%
! TTAATAGCTATTGAACTTGA+GGG + chr3_4:2379021-2379040 Msa0484890:intron 25.0%
!!! AGGTTATATAAATTTTGGGA+TGG - chr3_4:2379066-2379085 None:intergenic 25.0%
!! CTTCATAATGCAAATTTTGA+CGG - chr3_4:2379128-2379147 None:intergenic 25.0%
! TTCACATAATGAATAGCTAT+TGG + chr3_4:2379214-2379233 Msa0484890:intron 25.0%
! TGTATTGGATTAAGATTCTA+AGG + chr3_4:2379312-2379331 Msa0484890:intron 25.0%
! GTATTGGATTAAGATTCTAA+GGG + chr3_4:2379313-2379332 Msa0484890:intron 25.0%
! GCAATTTAAAAAAAGTCTTG+TGG + chr3_4:2379393-2379412 Msa0484890:intron 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG + chr3_4:2379477-2379496 Msa0484890:intron 25.0%
!!! CATGATTTTAAAAGACAATC+AGG - chr3_4:2380020-2380039 None:intergenic 25.0%
! AACAATTCTCATCTTATTCA+AGG - chr3_4:2380303-2380322 None:intergenic 25.0%
! AATAAGATGAGAATTGTTCT+TGG + chr3_4:2380305-2380324 Msa0484890:intron 25.0%
! TTCAAAATGATGCGAAAAAA+TGG - chr3_4:2380636-2380655 None:intergenic 25.0%
!!! TTTTTCGCATCATTTTGAAA+AGG + chr3_4:2380637-2380656 Msa0484890:intron 25.0%
! CAATAATACTAGATATGCAT+GGG - chr3_4:2380731-2380750 None:intergenic 25.0%
! CTTATAGTTGGAAATAACAA+AGG - chr3_4:2380967-2380986 None:intergenic 25.0%
!!! CTTTGTTATTTCCAACTATA+AGG + chr3_4:2380965-2380984 Msa0484890:intron 25.0%
! TTAGGAATTATTTAAGAAGC+AGG - chr3_4:2381019-2381038 None:intergenic 25.0%
! GGAAAATTGAAAATTGAAAG+TGG + chr3_4:2381102-2381121 Msa0484890:intron 25.0%
! ACTAATGTATGATATAATGG+GGG + chr3_4:2381152-2381171 Msa0484890:intron 25.0%
! GTAATGTTGAATATGTAACT+AGG + chr3_4:2381539-2381558 Msa0484890:intron 25.0%
! TGTTATATTCATAAAGAACC+GGG + chr3_4:2381976-2381995 Msa0484890:intron 25.0%
!!! TCCATTTTTTTTTTTGTGAC+AGG + chr3_4:2382058-2382077 Msa0484890:intron 25.0%
! ACCTGTCACAAAAAAAAAAA+TGG - chr3_4:2382062-2382081 None:intergenic 25.0%
AAATCATGAACACACCTTAT+GGG - chr3_4:2377029-2377048 None:intergenic 30.0%
AAAATCATGAACACACCTTA+TGG - chr3_4:2377030-2377049 None:intergenic 30.0%
CACATTCAAATCATTTGCTT+CGG + chr3_4:2377136-2377155 Msa0484890:CDS 30.0%
!! AGTCATTTTAACCACACTTT+AGG - chr3_4:2377233-2377252 None:intergenic 30.0%
TGATAAAGGTAGATTACTTC+TGG - chr3_4:2377324-2377343 None:intergenic 30.0%
! TCAGATCAAAGCTTTGATAA+AGG - chr3_4:2377338-2377357 None:intergenic 30.0%
! CTTTGTTTGGATATGTAAAG+AGG + chr3_4:2377482-2377501 Msa0484890:intron 30.0%
!! GTTCTCAATATTTGGTGTTT+GGG - chr3_4:2377699-2377718 None:intergenic 30.0%
!! AGTTCTCAATATTTGGTGTT+TGG - chr3_4:2377700-2377719 None:intergenic 30.0%
! TCACAAAATTTTACACCTTC+AGG + chr3_4:2377760-2377779 Msa0484890:intron 30.0%
AATCAACCCTTATACTTTCT+TGG - chr3_4:2377936-2377955 None:intergenic 30.0%
!!! TTTTCTAGTTTCTACACACA+AGG + chr3_4:2378088-2378107 Msa0484890:intron 30.0%
! AAAAGCTAGCTTATAGTTGA+TGG + chr3_4:2378207-2378226 Msa0484890:intron 30.0%
GATAAAATTAGCTGTTGAAG+TGG + chr3_4:2378284-2378303 Msa0484890:intron 30.0%
AAAAAAATGCCCCGTAAAAA+AGG + chr3_4:2378587-2378606 Msa0484890:intron 30.0%
AAAAAATGCCCCGTAAAAAA+GGG + chr3_4:2378588-2378607 Msa0484890:intron 30.0%
AAAGAAAGTCATATCAAACG+TGG + chr3_4:2378629-2378648 Msa0484890:intron 30.0%
AAGAAAGTCATATCAAACGT+GGG + chr3_4:2378630-2378649 Msa0484890:intron 30.0%
TTAATAAACACCACGTTGAT+AGG - chr3_4:2378667-2378686 None:intergenic 30.0%
AGAAAACCCTTTGATTCTTT+GGG - chr3_4:2378949-2378968 None:intergenic 30.0%
TTTGAGCCATTTGATATGAA+GGG - chr3_4:2378977-2378996 None:intergenic 30.0%
TGATATATTTGAGCCATTGA+TGG - chr3_4:2379186-2379205 None:intergenic 30.0%
CATGAAGACATAAGATTTCT+TGG + chr3_4:2379599-2379618 Msa0484890:intron 30.0%
! TTTTATGAGAGATAGAGAGA+GGG - chr3_4:2379819-2379838 None:intergenic 30.0%
! TTTTTATGAGAGATAGAGAG+AGG - chr3_4:2379820-2379839 None:intergenic 30.0%
! GACAATCAGGATTTTCAATT+TGG - chr3_4:2380007-2380026 None:intergenic 30.0%
!! GAATTGGATTAGGATTTTGA+AGG - chr3_4:2380105-2380124 None:intergenic 30.0%
TCATGATGACTTTATCACTT+AGG + chr3_4:2380182-2380201 Msa0484890:intron 30.0%
!! TTTATCACTTAGGCATTGAA+GGG + chr3_4:2380192-2380211 Msa0484890:intron 30.0%
GTGATGAACTTTACATTTGT+AGG + chr3_4:2380337-2380356 Msa0484890:intron 30.0%
CTTATGGGTAACAAAATCAA+CGG - chr3_4:2380423-2380442 None:intergenic 30.0%
! TTTTGTTACCCATAAGGAAA+AGG + chr3_4:2380427-2380446 Msa0484890:intron 30.0%
! TAATCACACCTTTTCCTTAT+GGG - chr3_4:2380438-2380457 None:intergenic 30.0%
GCAATAATACTAGATATGCA+TGG - chr3_4:2380732-2380751 None:intergenic 30.0%
AGAGTTCAGACATTGTTATA+TGG - chr3_4:2380858-2380877 None:intergenic 30.0%
TGGCATTCTTTAAATAGAAC+CGG + chr3_4:2380880-2380899 Msa0484890:intron 30.0%
ATATATTGTCGCAATTGTAC+CGG - chr3_4:2380902-2380921 None:intergenic 30.0%
CTTGTTAAAACCATCAGTTT+AGG - chr3_4:2381037-2381056 None:intergenic 30.0%
!! TTTAATGCTTTGAAGTTCGT+AGG + chr3_4:2381061-2381080 Msa0484890:intron 30.0%
AGGAAATAATGTATGCTGTA+AGG + chr3_4:2381081-2381100 Msa0484890:intron 30.0%
!!! TATCATACATTAGTTTTGGG+AGG - chr3_4:2381146-2381165 None:intergenic 30.0%
TTTACTTGTGGTTAAACGAT+GGG - chr3_4:2381423-2381442 None:intergenic 30.0%
ATTTACTTGTGGTTAAACGA+TGG - chr3_4:2381424-2381443 None:intergenic 30.0%
TGACTTCTTTCATTTACTTG+TGG - chr3_4:2381435-2381454 None:intergenic 30.0%
! TAAGGCACAAACATTTTTGT+TGG - chr3_4:2381495-2381514 None:intergenic 30.0%
AACAAAAATGTTTGTGCCTT+AGG + chr3_4:2381494-2381513 Msa0484890:intron 30.0%
TATTCGGATGATTAGTACAA+CGG - chr3_4:2381614-2381633 None:intergenic 30.0%
TTTCTCTTTCATCTGAATGT+TGG + chr3_4:2381697-2381716 Msa0484890:intron 30.0%
!! GTTACCTTTAAAACAGATTG+TGG - chr3_4:2381919-2381938 None:intergenic 30.0%
AAAACTCAAATGTCTAACAC+TGG + chr3_4:2381946-2381965 Msa0484890:intron 30.0%
AGAATTTAGACCTTGTGATG+TGG - chr3_4:2376895-2376914 None:intergenic 35.0%
AGATGGAAAGAAATAGTGAG+TGG - chr3_4:2376927-2376946 None:intergenic 35.0%
!!! ATAGAGCTTCAGTTTTGAGA+TGG - chr3_4:2376944-2376963 None:intergenic 35.0%
TTTCTTCTTGCTCTTTAACC+TGG + chr3_4:2376987-2377006 Msa0484890:CDS 35.0%
TTCATCCTACTTATCCCATA+AGG + chr3_4:2377012-2377031 Msa0484890:CDS 35.0%
CGAAGCAAATGATTTGAATG+TGG - chr3_4:2377138-2377157 None:intergenic 35.0%
AGTTTCTACACACAAGGAAA+AGG + chr3_4:2378094-2378113 Msa0484890:intron 35.0%
!!! GTAGCTTTTTAGCTTATAGC+TGG - chr3_4:2378745-2378764 None:intergenic 35.0%
TTGAAAGAATGACTCGTGTT+TGG - chr3_4:2378818-2378837 None:intergenic 35.0%
! AAAGCTAGCTTATAGCTTCT+TGG - chr3_4:2378860-2378879 None:intergenic 35.0%
!! ATTCTAGGTGTTGGCTTATT+TGG - chr3_4:2378913-2378932 None:intergenic 35.0%
AACTGATACATTCTAGGTGT+TGG - chr3_4:2378922-2378941 None:intergenic 35.0%
AAAACCCTTTGATTCTTTGG+GGG - chr3_4:2378947-2378966 None:intergenic 35.0%
GAAAACCCTTTGATTCTTTG+GGG - chr3_4:2378948-2378967 None:intergenic 35.0%
CAGAAAACCCTTTGATTCTT+TGG - chr3_4:2378950-2378969 None:intergenic 35.0%
! CAAAGAATCAAAGGGTTTTC+TGG + chr3_4:2378948-2378967 Msa0484890:intron 35.0%
TTGAGCCATTTGATATGAAG+GGG - chr3_4:2378976-2378995 None:intergenic 35.0%
GTTTGAGCCATTTGATATGA+AGG - chr3_4:2378978-2378997 None:intergenic 35.0%
!! ATGAATAGCTATTGGCCTTA+AGG + chr3_4:2379222-2379241 Msa0484890:intron 35.0%
TGGCTTTCTTTCTTAGCTTA+AGG + chr3_4:2379285-2379304 Msa0484890:intron 35.0%
GGCTTTCTTTCTTAGCTTAA+GGG + chr3_4:2379286-2379305 Msa0484890:intron 35.0%
GCTTTCTTTCTTAGCTTAAG+GGG + chr3_4:2379287-2379306 Msa0484890:intron 35.0%
CTTTCTTTCTTAGCTTAAGG+GGG + chr3_4:2379288-2379307 Msa0484890:intron 35.0%
TTTATGAGAGATAGAGAGAG+GGG - chr3_4:2379818-2379837 None:intergenic 35.0%
TCAACTCTCTGAATTGGATT+AGG - chr3_4:2380115-2380134 None:intergenic 35.0%
! GAGAGTTGAAGCATCTATTT+AGG + chr3_4:2380126-2380145 Msa0484890:intron 35.0%
! GTTGAAGCATCTATTTAGGA+AGG + chr3_4:2380130-2380149 Msa0484890:intron 35.0%
!! CTTTATCACTTAGGCATTGA+AGG + chr3_4:2380191-2380210 Msa0484890:intron 35.0%
GGTAATGTGAGATTTGAGTA+GGG + chr3_4:2380233-2380252 Msa0484890:intron 35.0%
GTAATGTGAGATTTGAGTAG+GGG + chr3_4:2380234-2380253 Msa0484890:intron 35.0%
!!! CGTTGATTTTGTTACCCATA+AGG + chr3_4:2380421-2380440 Msa0484890:intron 35.0%
! CTAATCACACCTTTTCCTTA+TGG - chr3_4:2380439-2380458 None:intergenic 35.0%
! TTTGAATAGCTCTGTGCTTT+AGG + chr3_4:2380496-2380515 Msa0484890:intron 35.0%
TGCTGTCTATGTGTATGAAA+AGG + chr3_4:2380522-2380541 Msa0484890:intron 35.0%
GAGCATAATTGGAAAAGCAA+AGG - chr3_4:2380709-2380728 None:intergenic 35.0%
GAACTTATTCAATTGCAGCA+CGG + chr3_4:2380760-2380779 Msa0484890:intron 35.0%
TATTTAAGAAGCAGGCATAC+CGG - chr3_4:2381011-2381030 None:intergenic 35.0%
ATGTAAACTGCCAAGTCATT+CGG - chr3_4:2381286-2381305 None:intergenic 35.0%
TTAATGGCTCATGAGACAAA+AGG + chr3_4:2381468-2381487 Msa0484890:intron 35.0%
TAATGGCTCATGAGACAAAA+GGG + chr3_4:2381469-2381488 Msa0484890:intron 35.0%
ATCACAATCTCTCATTCCTA+AGG - chr3_4:2381513-2381532 None:intergenic 35.0%
ATTCGGATGATTAGTACAAC+GGG - chr3_4:2381613-2381632 None:intergenic 35.0%
TTAGCTTCACTATGCTATCA+AGG + chr3_4:2381728-2381747 Msa0484890:intron 35.0%
!!! GCTCAAATCTGTTTTTGTCT+TGG + chr3_4:2381813-2381832 Msa0484890:intron 35.0%
ACCTGCACAAAAAGATACAT+GGG - chr3_4:2381869-2381888 None:intergenic 35.0%
! TCTTTTTGTGCAGGTCTTAA+AGG + chr3_4:2381874-2381893 Msa0484890:intron 35.0%
!! TGCTCCACAATCTGTTTTAA+AGG + chr3_4:2381912-2381931 Msa0484890:CDS 35.0%
!! AACTCTAGGATTGTATTTCC+TGG - chr3_4:2382126-2382145 None:intergenic 35.0%
TATACCACTCTTCACCACTA+TGG + chr3_4:2376961-2376980 Msa0484890:exon 40.0%
GCAAGAAGAAACTACCATAG+TGG - chr3_4:2376978-2376997 None:intergenic 40.0%
ACACACCTTATGGGATAAGT+AGG - chr3_4:2377020-2377039 None:intergenic 40.0%
TAACAATGTCTCCTGTGCAA+TGG + chr3_4:2377179-2377198 Msa0484890:CDS 40.0%
TAGGCTCTTACTTTCTGTAC+TGG - chr3_4:2377214-2377233 None:intergenic 40.0%
GAAAGTAAGAGCCTAAAGTG+TGG + chr3_4:2377219-2377238 Msa0484890:intron 40.0%
TCAGCTAAGAGTGAATTTGC+TGG - chr3_4:2377444-2377463 None:intergenic 40.0%
GCAAATTCACTCTTAGCTGA+AGG + chr3_4:2377444-2377463 Msa0484890:CDS 40.0%
GGAATTGAATAGTTGCCTGA+AGG - chr3_4:2377778-2377797 None:intergenic 40.0%
! GATCAAACTAAGGGTGTGTT+TGG + chr3_4:2378153-2378172 Msa0484890:intron 40.0%
! TTCAGCTATCAGCTAGCTTA+TGG - chr3_4:2378189-2378208 None:intergenic 40.0%
TGTTAGCAAACACAGCCTAA+GGG + chr3_4:2378884-2378903 Msa0484890:intron 40.0%
TTCACCCCCAAAGAATCAAA+GGG + chr3_4:2378940-2378959 Msa0484890:intron 40.0%
TGGATCCCCTTCATATCAAA+TGG + chr3_4:2378968-2378987 Msa0484890:intron 40.0%
ACCTATAGCGATCGAACTTA+AGG + chr3_4:2379082-2379101 Msa0484890:intron 40.0%
CCTATAGCGATCGAACTTAA+GGG + chr3_4:2379083-2379102 Msa0484890:intron 40.0%
TTGACGGTTAAATGCAACCT+CGG - chr3_4:2379112-2379131 None:intergenic 40.0%
! CCATTTACGTCACTTTGAGA+TGG - chr3_4:2379268-2379287 None:intergenic 40.0%
CCATCTCAAAGTGACGTAAA+TGG + chr3_4:2379265-2379284 Msa0484890:intron 40.0%
TTAGCTTAAGGGGGATGTAT+TGG + chr3_4:2379297-2379316 Msa0484890:intron 40.0%
ATAGAGAGAGAGAGAGAGAA+GGG - chr3_4:2379726-2379745 None:intergenic 40.0%
GAGAAAAGACAGGAGATAGA+GGG - chr3_4:2379774-2379793 None:intergenic 40.0%
TTATGAGAGATAGAGAGAGG+GGG - chr3_4:2379817-2379836 None:intergenic 40.0%
GATGCTTCAACTCTCTGAAT+TGG - chr3_4:2380121-2380140 None:intergenic 40.0%
GGGTAATGTGAGATTTGAGT+AGG + chr3_4:2380232-2380251 Msa0484890:intron 40.0%
CTCATCTTATTCAAGGCTAC+TGG - chr3_4:2380296-2380315 None:intergenic 40.0%
GGGTAACAAAATCAACGGAA+GGG - chr3_4:2380418-2380437 None:intergenic 40.0%
TGGGTAACAAAATCAACGGA+AGG - chr3_4:2380419-2380438 None:intergenic 40.0%
! GATATGCATGGGAGCATAAT+TGG - chr3_4:2380720-2380739 None:intergenic 40.0%
AGGTTGTCAGCTGGATTAAT+CGG + chr3_4:2380985-2381004 Msa0484890:intron 40.0%
TGTAAACTGCCAAGTCATTC+GGG - chr3_4:2381285-2381304 None:intergenic 40.0%
! GAATGACTTGGCAGTTTACA+TGG + chr3_4:2381285-2381304 Msa0484890:intron 40.0%
! GAGGGGAAGATAGTTCTTTT+AGG - chr3_4:2381338-2381357 None:intergenic 40.0%
ATTCCTGTTAATGCAGTGAG+GGG - chr3_4:2381355-2381374 None:intergenic 40.0%
GATTCCTGTTAATGCAGTGA+GGG - chr3_4:2381356-2381375 None:intergenic 40.0%
TGATTCCTGTTAATGCAGTG+AGG - chr3_4:2381357-2381376 None:intergenic 40.0%
TTCGGATGATTAGTACAACG+GGG - chr3_4:2381612-2381631 None:intergenic 40.0%
! TCCCATGTATCTTTTTGTGC+AGG + chr3_4:2381865-2381884 Msa0484890:intron 40.0%
GACCTGCACAAAAAGATACA+TGG - chr3_4:2381870-2381889 None:intergenic 40.0%
TTTGTGCAGGTCTTAAAGGA+AGG + chr3_4:2381878-2381897 Msa0484890:intron 40.0%
GGTCTTAAAGGAAGGTTGTT+AGG + chr3_4:2381886-2381905 Msa0484890:intron 40.0%
! CTAGGTAATTTGTAGTGTCC+CGG - chr3_4:2381997-2382016 None:intergenic 40.0%
!! TTTCGCCTTGTTTCCTTGTT+GGG - chr3_4:2382093-2382112 None:intergenic 40.0%
! TCTAGGATTGTATTTCCTGG+AGG - chr3_4:2382123-2382142 None:intergenic 40.0%
! CTCTTTTTGCAGACAACTCT+AGG - chr3_4:2382140-2382159 None:intergenic 40.0%
TAGCTCAATTTGGATCGTTG+CGG - chr3_4:2382197-2382216 None:intergenic 40.0%
AAACTCCTAGCCACATCACA+AGG + chr3_4:2376882-2376901 Msa0484890:five_prime_UTR 45.0%
TTAGACCTTGTGATGTGGCT+AGG - chr3_4:2376890-2376909 None:intergenic 45.0%
ACTACCATAGTGGTGAAGAG+TGG - chr3_4:2376968-2376987 None:intergenic 45.0%
GGATAAGTAGGATGAAGTCC+AGG - chr3_4:2377008-2377027 None:intergenic 45.0%
! GGAAGTTGTTTCCATTGCAC+AGG - chr3_4:2377193-2377212 None:intergenic 45.0%
AGTTACCTTGCCTATCAACG+TGG + chr3_4:2378654-2378673 Msa0484890:intron 45.0%
! AAACACCACGTTGATAGGCA+AGG - chr3_4:2378662-2378681 None:intergenic 45.0%
GTGTTAGCAAACACAGCCTA+AGG + chr3_4:2378883-2378902 Msa0484890:intron 45.0%
!! TGGCTTATTTGGTGTCCCTT+AGG - chr3_4:2378902-2378921 None:intergenic 45.0%
GGGGTGAACTGATACATTCT+AGG - chr3_4:2378928-2378947 None:intergenic 45.0%
GTTCACCCCCAAAGAATCAA+AGG + chr3_4:2378939-2378958 Msa0484890:intron 45.0%
CCCTTAAGTTCGATCGCTAT+AGG - chr3_4:2379086-2379105 None:intergenic 45.0%
TGACGGTTAAATGCAACCTC+GGG - chr3_4:2379111-2379130 None:intergenic 45.0%
TACAGTAGCATCTCGATCCA+CGG + chr3_4:2379160-2379179 Msa0484890:intron 45.0%
!! ATTGGCCTTAAGGATCATCG+AGG + chr3_4:2379232-2379251 Msa0484890:intron 45.0%
GGAGAAGAGAGAAGGAAGAA+GGG - chr3_4:2379665-2379684 None:intergenic 45.0%
AAAAGAGAGGAGAGAGGGAA+GGG - chr3_4:2379686-2379705 None:intergenic 45.0%
CATAGAGAGAGAGAGAGAGA+AGG - chr3_4:2379727-2379746 None:intergenic 45.0%
GGAGAAAAGACAGGAGATAG+AGG - chr3_4:2379775-2379794 None:intergenic 45.0%
AAGGGTTGAGCATCTGCATA+GGG + chr3_4:2380210-2380229 Msa0484890:intron 45.0%
CAAAATCAACGGAAGGGCTA+TGG - chr3_4:2380412-2380431 None:intergenic 45.0%
TCATTGCACAGCTTAGTTCG+TGG - chr3_4:2380942-2380961 None:intergenic 45.0%
CCAGCTGACAACCTTATAGT+TGG - chr3_4:2380979-2380998 None:intergenic 45.0%
CCAACTATAAGGTTGTCAGC+TGG + chr3_4:2380976-2380995 Msa0484890:intron 45.0%
ATTAGTACAACGGGGTAGGA+GGG - chr3_4:2381604-2381623 None:intergenic 45.0%
GATGATTAGTACAACGGGGT+AGG - chr3_4:2381608-2381627 None:intergenic 45.0%
AAGACCCCAACAAGGAAACA+AGG + chr3_4:2382085-2382104 Msa0484890:CDS 45.0%
!! TTCGCCTTGTTTCCTTGTTG+GGG - chr3_4:2382092-2382111 None:intergenic 45.0%
!! GTTTCGCCTTGTTTCCTTGT+TGG - chr3_4:2382094-2382113 None:intergenic 45.0%
!!! TTTCTTTTTTAATTATTATT+AGG + chr3_4:2377360-2377379 Msa0484890:intron 5.0%
CAGAGAAGACCACTGCTGTT+GGG + chr3_4:2377390-2377409 Msa0484890:CDS 50.0%
AGACCACTGCTGTTGGGTAT+AGG + chr3_4:2377396-2377415 Msa0484890:CDS 50.0%
ATTGAACTTGAGGGTTGCCG+AGG + chr3_4:2379030-2379049 Msa0484890:intron 50.0%
GGGATGGTTAAATGCAGCCT+CGG - chr3_4:2379050-2379069 None:intergenic 50.0%
GACGGTTAAATGCAACCTCG+GGG - chr3_4:2379110-2379129 None:intergenic 50.0%
! ATTTGAGCCATTGATGGCCG+TGG - chr3_4:2379180-2379199 None:intergenic 50.0%
TGCCACCTCGATGATCCTTA+AGG - chr3_4:2379240-2379259 None:intergenic 50.0%
GGGAGAAGAGAGAAGGAAGA+AGG - chr3_4:2379666-2379685 None:intergenic 50.0%
GAAAAGAGAGGAGAGAGGGA+AGG - chr3_4:2379687-2379706 None:intergenic 50.0%
GGGAGAAAAGAGAGGAGAGA+GGG - chr3_4:2379691-2379710 None:intergenic 50.0%
AGGGAGAAAAGAGAGGAGAG+AGG - chr3_4:2379692-2379711 None:intergenic 50.0%
AGAGAGGAGGGAGAAAAGAG+AGG - chr3_4:2379699-2379718 None:intergenic 50.0%
GGAGAGAAGGGAGAAAAGAC+AGG - chr3_4:2379784-2379803 None:intergenic 50.0%
GAAGGGTTGAGCATCTGCAT+AGG + chr3_4:2380209-2380228 Msa0484890:intron 50.0%
AGGGTTGAGCATCTGCATAG+GGG + chr3_4:2380211-2380230 Msa0484890:intron 50.0%
GAGATTTGAGTAGGGGTCGA+AGG + chr3_4:2380241-2380260 Msa0484890:intron 50.0%
TGTCAGCTGGATTAATCGGC+CGG + chr3_4:2380989-2381008 Msa0484890:intron 50.0%
ACGGAATCACCCGAATGACT+TGG + chr3_4:2381273-2381292 Msa0484890:intron 50.0%
CTTCCCCTCACTGCATTAAC+AGG + chr3_4:2381349-2381368 Msa0484890:intron 50.0%
AGTATTTCCTTCACCGCCAG+AGG - chr3_4:2381394-2381413 None:intergenic 50.0%
TTAGTACAACGGGGTAGGAG+GGG - chr3_4:2381603-2381622 None:intergenic 50.0%
GATTAGTACAACGGGGTAGG+AGG - chr3_4:2381605-2381624 None:intergenic 50.0%
CAGGTTCAAAGACCCCAACA+AGG + chr3_4:2382077-2382096 Msa0484890:intron 50.0%
AGGCGAAACTAAAAGCCTCC+AGG + chr3_4:2382105-2382124 Msa0484890:CDS 50.0%
CCAACAGCAGTGGTCTTCTC+TGG - chr3_4:2377392-2377411 None:intergenic 55.0%
CCAGAGAAGACCACTGCTGT+TGG + chr3_4:2377389-2377408 Msa0484890:CDS 55.0%
GCTCCTATACCCAACAGCAG+TGG - chr3_4:2377402-2377421 None:intergenic 55.0%
ATCGAACTTAAGGGTCCCCG+AGG + chr3_4:2379092-2379111 Msa0484890:intron 55.0%
TCTCGATCCACGGCCATCAA+TGG + chr3_4:2379170-2379189 Msa0484890:intron 55.0%
GGCCTTAAGGATCATCGAGG+TGG + chr3_4:2379235-2379254 Msa0484890:intron 55.0%
GAGGGAAGGGAGAAGAGAGA+AGG - chr3_4:2379673-2379692 None:intergenic 55.0%
GAGAAGGGAGAGAGAGAGGA+GGG - chr3_4:2379711-2379730 None:intergenic 55.0%
AGAGAAGGGAGAGAGAGAGG+AGG - chr3_4:2379712-2379731 None:intergenic 55.0%
GAGAGAGAAGGGAGAGAGAG+AGG - chr3_4:2379715-2379734 None:intergenic 55.0%
GGAAGAGAGGACGGAGAGAA+GGG - chr3_4:2379796-2379815 None:intergenic 55.0%
GATAGAGAGAGGGGGAAGAG+AGG - chr3_4:2379809-2379828 None:intergenic 55.0%
GGGTTGAGCATCTGCATAGG+GGG + chr3_4:2380212-2380231 Msa0484890:intron 55.0%
!! CACTAGCGAAGCATTGCCTC+TGG + chr3_4:2381375-2381394 Msa0484890:intron 55.0%
!! TAGCGAAGCATTGCCTCTGG+CGG + chr3_4:2381378-2381397 Msa0484890:intron 55.0%
GGGAAGAGAGGACGGAGAGA+AGG - chr3_4:2379797-2379816 None:intergenic 60.0%
GAGAGAGGGGGAAGAGAGGA+CGG - chr3_4:2379805-2379824 None:intergenic 60.0%
AGCATTGCCTCTGGCGGTGA+AGG + chr3_4:2381384-2381403 Msa0484890:intron 60.0%
CAACGGGGTAGGAGGGGAGT+TGG - chr3_4:2381597-2381616 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 2376880 2382217 2376880 ID=Msa0484890;Name=Msa0484890
chr3_4 mRNA 2376880 2382217 2376880 ID=Msa0484890-mRNA-1;Parent=Msa0484890;Name=Msa0484890-mRNA-1;_AED=0.23;_eAED=0.23;_QI=100|0.5|0.6|0.6|1|1|5|0|139
chr3_4 exon 2376880 2377033 2376880 ID=Msa0484890-mRNA-1:exon:800;Parent=Msa0484890-mRNA-1
chr3_4 exon 2377126 2377222 2377126 ID=Msa0484890-mRNA-1:exon:801;Parent=Msa0484890-mRNA-1
chr3_4 exon 2377382 2377465 2377382 ID=Msa0484890-mRNA-1:exon:802;Parent=Msa0484890-mRNA-1
chr3_4 exon 2381887 2381933 2381887 ID=Msa0484890-mRNA-1:exon:803;Parent=Msa0484890-mRNA-1
chr3_4 exon 2382080 2382217 2382080 ID=Msa0484890-mRNA-1:exon:804;Parent=Msa0484890-mRNA-1
chr3_4 five_prime_UTR 2376880 2376979 2376880 ID=Msa0484890-mRNA-1:five_prime_utr;Parent=Msa0484890-mRNA-1
chr3_4 CDS 2376980 2377033 2376980 ID=Msa0484890-mRNA-1:cds;Parent=Msa0484890-mRNA-1
chr3_4 CDS 2377126 2377222 2377126 ID=Msa0484890-mRNA-1:cds;Parent=Msa0484890-mRNA-1
chr3_4 CDS 2377382 2377465 2377382 ID=Msa0484890-mRNA-1:cds;Parent=Msa0484890-mRNA-1
chr3_4 CDS 2381887 2381933 2381887 ID=Msa0484890-mRNA-1:cds;Parent=Msa0484890-mRNA-1
chr3_4 CDS 2382080 2382217 2382080 ID=Msa0484890-mRNA-1:cds;Parent=Msa0484890-mRNA-1
Gene Sequence

>Msa0484890

ATGGTAGTTTCTTCTTGCTCTTTAACCTGGACTTCATCCTACTTATCCCATAAGCTAAACTTGCCACATTCAAATCATTTGCTTCGGAATACTGCAACTTCATCTTCTAACAATGTCTCCTGTGCAATGGAAACAACTTCCAGTACAGAAAGACACTGCCAGAGAAGACCACTGCTGTTGGGTATAGGAGCATTGACAGCAAATTTGTTACCAGCAAATTCACTCTTAGCTGAAGGTCTTAAAGGAAGGTTGTTAGGTTTTGCTCCACAATCTGTTTTAAAGGTTCAAAGACCCCAACAAGGAAACAAGGCGAAACTAAAAGCCTCCAGGAAATACAATCCTAGAGTTGTCTGCAAAAAGAGTAAAATAAACAAAATCAAGAGGGAACTCAAAAATCCGCAACGATCCAAATTGAGCTAA

Protein sequence

>Msa0484890

MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTATSSSNNVSCAMETTSSTERHCQRRPLLLGIGALTANLLPANSLLAEGLKGRLLGFAPQSVLKVQRPQQGNKAKLKASRKYNPRVVCKKSKINKIKRELKNPQRSKLS*