AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0238530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238530 MtrunA17_Chr2g0288451 98.930 374 4 0 1 374 1 374 0.0 751
Msa0238530 MtrunA17_Chr3g0099081 68.155 336 101 2 44 373 12 347 1.33e-168 474
Msa0238530 MtrunA17_Chr8g0376321 79.402 301 11 1 74 374 1 250 9.31e-165 461
Msa0238530 MtrunA17_Chr4g0073341 29.380 371 194 12 9 373 17 325 6.97e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238530 AT4G04640.1 81.383 376 65 3 1 374 1 373 0.0 603
Msa0238530 AT1G15700.1 70.725 345 100 1 30 373 39 383 2.55e-177 498
Msa0238530 AT2G33040.1 31.661 319 171 10 57 373 48 321 4.90e-28 112

Find 61 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTAGACCACACTGAATT+TGG 0.110416 2_2:-12136605 None:intergenic
TATTATCAGTGTTGGTAAAA+AGG 0.215367 2_2:+12136959 Msa0238530:CDS
GGTGAAATCTGTGATATTAA+TGG 0.242769 2_2:+12137200 Msa0238530:CDS
GCTCAAGAAGCTGTTGTTAA+TGG 0.249925 2_2:+12136714 Msa0238530:CDS
TCAAATCTTGAGGGCTTTGC+AGG 0.276662 2_2:+12137397 Msa0238530:CDS
GTGACAGTGGAAGCAAAGTA+TGG 0.339355 2_2:-12137172 None:intergenic
GGAAGCAAAGTATGGATTAT+AGG 0.339933 2_2:-12137164 None:intergenic
ATATCACAGATTTCACCTTT+TGG 0.359402 2_2:-12137194 None:intergenic
AACCTATCAACAGGTATATA+AGG 0.362640 2_2:-12137005 None:intergenic
TCCTGCTCAAACTGCAAAAT+CGG 0.366440 2_2:-12137329 None:intergenic
TCTTAGACCACACTGAATTT+GGG 0.374759 2_2:-12136604 None:intergenic
ACTGGTCTAAGCTTAGTTAG+AGG 0.375333 2_2:-12136813 None:intergenic
CAGCACCAGCAACAATTTCC+AGG 0.387882 2_2:-12137550 None:intergenic
TGAATTTGGGTTGGTCTTGA+AGG 0.393465 2_2:-12136591 None:intergenic
ATTGCTGAGTTGAAAGGTCT+TGG 0.399341 2_2:+12136924 Msa0238530:CDS
GACCTTATATACCTGTTGAT+AGG 0.399954 2_2:+12137003 Msa0238530:CDS
CTGTTGAAAGAGATGCTGTT+AGG 0.407775 2_2:+12137285 Msa0238530:CDS
TGCATCAGGTAATGAAGGTT+TGG 0.412967 2_2:-12136496 None:intergenic
CCTGTTGATAGGTTTCTTGA+AGG 0.420186 2_2:+12137014 Msa0238530:CDS
TTCAGGTTAACAACGAAAGA+AGG 0.449455 2_2:+12137254 Msa0238530:CDS
TTTGAACAGTCAAATCTTGA+GGG 0.462626 2_2:+12137388 Msa0238530:CDS
GTTGCTCTTGTTGTTTGCAC+TGG 0.463249 2_2:+12136843 Msa0238530:CDS
TGTTGCTGGTGCTGATGCCT+TGG 0.464852 2_2:+12137559 Msa0238530:CDS
CCTTCAAGAAACCTATCAAC+AGG 0.466272 2_2:-12137014 None:intergenic
TCAACTAGTGTCTGTGAGAA+AGG 0.467803 2_2:-12136741 None:intergenic
ATTTGACTGTTCAAATAAAG+TGG 0.475054 2_2:-12137380 None:intergenic
TAAGATCACTGGTGAAATCC+TGG 0.483893 2_2:+12137532 Msa0238530:CDS
AGTGCATCAAGAATCTGAAC+AGG 0.485687 2_2:-12137353 None:intergenic
GAAATCCTGGAAATTGTTGC+TGG 0.495138 2_2:+12137545 Msa0238530:CDS
AAGGAGAGGTTAGATGCATC+AGG 0.495737 2_2:-12136510 None:intergenic
GTTGTTTGCACTGGTGATAG+AGG 0.498449 2_2:+12136852 Msa0238530:CDS
GTGCTTCTTTAGCAGTAGGA+AGG 0.507770 2_2:-12137043 None:intergenic
TTGCTTCCACTGTCACCAAA+AGG 0.509640 2_2:+12137179 Msa0238530:CDS
TTAGATGCATCAGGTAATGA+AGG 0.514624 2_2:-12136501 None:intergenic
GTTGATAGGTTTCTTGAAGG+TGG 0.518256 2_2:+12137017 Msa0238530:CDS
TTTCACCAGTGATCTTAGCT+TGG 0.530031 2_2:-12137526 None:intergenic
AATAGGATTGCTGAGTTGAA+AGG 0.535194 2_2:+12136918 Msa0238530:CDS
GTTTGTGCTTCTTTAGCAGT+AGG 0.537662 2_2:-12137047 None:intergenic
ATTTGAACAGTCAAATCTTG+AGG 0.540431 2_2:+12137387 Msa0238530:CDS
CAACTTCTTCACTAACAAAG+AGG 0.544704 2_2:-12137091 None:intergenic
GATTACACTATTATCAGTGT+TGG 0.547808 2_2:+12136951 Msa0238530:CDS
GCTGTTCGTTGATGCTGTAA+AGG 0.551485 2_2:-12136767 None:intergenic
TTTGTGAAGGAAGCTGAAAA+GGG 0.553199 2_2:-12136548 None:intergenic
AGACCACACTGAATTTGGGT+TGG 0.556222 2_2:-12136600 None:intergenic
GTTGAAGAAGAATTTGTCAA+GGG 0.556839 2_2:+12137487 Msa0238530:CDS
AGGGCTGAGAGCTGAACGGA+AGG 0.577278 2_2:-12136529 None:intergenic
AGTTGAAGAAGAATTTGTCA+AGG 0.578085 2_2:+12137486 Msa0238530:CDS
CAACGCCAAGCTAAGATCAC+TGG 0.583862 2_2:+12137521 Msa0238530:CDS
TAGAGGAGCTTCGATATCGT+CGG 0.592502 2_2:-12136796 None:intergenic
AACTTCTTCACTAACAAAGA+GGG 0.594771 2_2:-12137090 None:intergenic
GGTGATAGAGGTCTCTGTGG+TGG 0.597310 2_2:+12136864 Msa0238530:CDS
CACTGAAGCAATGAAGCTTG+TGG 0.611051 2_2:+12136671 Msa0238530:CDS
TTGCTCAAATATCACCATGT+TGG 0.614531 2_2:+12136467 Msa0238530:CDS
TGAGAGCTGAACGGAAGGAG+AGG 0.630596 2_2:-12136524 None:intergenic
AAACTGTGTTGATGCTGCTG+AGG 0.639433 2_2:+12137223 Msa0238530:CDS
GAAAAGGGCTGAGAGCTGAA+CGG 0.641643 2_2:-12136533 None:intergenic
TATAAATACACTCTATACCA+AGG 0.641733 2_2:-12137576 None:intergenic
CAGGTATATAAGGTCTACGA+AGG 0.649710 2_2:-12136995 None:intergenic
ACTGGTGATAGAGGTCTCTG+TGG 0.722605 2_2:+12136861 Msa0238530:CDS
AGGTTTGGATGAGACCAACA+TGG 0.753902 2_2:-12136481 None:intergenic
AGACCAACCCAAATTCAGTG+TGG 0.755194 2_2:+12136597 Msa0238530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGAAAAAAGCTGAAAAT+AGG + chr2_2:12136901-12136920 Msa0238530:CDS 20.0%
!! TATTGAAAAAAGCTGAAAAT+AGG + chr2_2:12136901-12136920 Msa0238530:CDS 20.0%
!!! TATTATCAGTGTTGGTAAAA+AGG + chr2_2:12136959-12136978 Msa0238530:CDS 25.0%
!!! ATTATCAGTGTTGGTAAAAA+GGG + chr2_2:12136960-12136979 Msa0238530:CDS 25.0%
! ATTTGACTGTTCAAATAAAG+TGG - chr2_2:12137383-12137402 None:intergenic 25.0%
!!! TATTATCAGTGTTGGTAAAA+AGG + chr2_2:12136959-12136978 Msa0238530:CDS 25.0%
!!! ATTATCAGTGTTGGTAAAAA+GGG + chr2_2:12136960-12136979 Msa0238530:CDS 25.0%
! ATTTGACTGTTCAAATAAAG+TGG - chr2_2:12137383-12137402 None:intergenic 25.0%
!! TGTTTTTGACAGAGTCAATA+CGG - chr2_2:12136641-12136660 None:intergenic 30.0%
GATTACACTATTATCAGTGT+TGG + chr2_2:12136951-12136970 Msa0238530:CDS 30.0%
AACCTATCAACAGGTATATA+AGG - chr2_2:12137008-12137027 None:intergenic 30.0%
AACTTCTTCACTAACAAAGA+GGG - chr2_2:12137093-12137112 None:intergenic 30.0%
! ATATCACAGATTTCACCTTT+TGG - chr2_2:12137197-12137216 None:intergenic 30.0%
GGTGAAATCTGTGATATTAA+TGG + chr2_2:12137200-12137219 Msa0238530:CDS 30.0%
ATTTGAACAGTCAAATCTTG+AGG + chr2_2:12137387-12137406 Msa0238530:CDS 30.0%
TTTGAACAGTCAAATCTTGA+GGG + chr2_2:12137388-12137407 Msa0238530:CDS 30.0%
AGTTGAAGAAGAATTTGTCA+AGG + chr2_2:12137486-12137505 Msa0238530:CDS 30.0%
GTTGAAGAAGAATTTGTCAA+GGG + chr2_2:12137487-12137506 Msa0238530:CDS 30.0%
!! TGTTTTTGACAGAGTCAATA+CGG - chr2_2:12136641-12136660 None:intergenic 30.0%
GATTACACTATTATCAGTGT+TGG + chr2_2:12136951-12136970 Msa0238530:CDS 30.0%
AACCTATCAACAGGTATATA+AGG - chr2_2:12137008-12137027 None:intergenic 30.0%
AACTTCTTCACTAACAAAGA+GGG - chr2_2:12137093-12137112 None:intergenic 30.0%
! ATATCACAGATTTCACCTTT+TGG - chr2_2:12137197-12137216 None:intergenic 30.0%
GGTGAAATCTGTGATATTAA+TGG + chr2_2:12137200-12137219 Msa0238530:CDS 30.0%
ATTTGAACAGTCAAATCTTG+AGG + chr2_2:12137387-12137406 Msa0238530:CDS 30.0%
TTTGAACAGTCAAATCTTGA+GGG + chr2_2:12137388-12137407 Msa0238530:CDS 30.0%
AGTTGAAGAAGAATTTGTCA+AGG + chr2_2:12137486-12137505 Msa0238530:CDS 30.0%
GTTGAAGAAGAATTTGTCAA+GGG + chr2_2:12137487-12137506 Msa0238530:CDS 30.0%
TTGCTCAAATATCACCATGT+TGG + chr2_2:12136467-12136486 Msa0238530:CDS 35.0%
TTAGATGCATCAGGTAATGA+AGG - chr2_2:12136504-12136523 None:intergenic 35.0%
TTTGTGAAGGAAGCTGAAAA+GGG - chr2_2:12136551-12136570 None:intergenic 35.0%
! TTTTGTGAAGGAAGCTGAAA+AGG - chr2_2:12136552-12136571 None:intergenic 35.0%
!! GAAGATGATGAGTTTTGTGA+AGG - chr2_2:12136564-12136583 None:intergenic 35.0%
TCTTAGACCACACTGAATTT+GGG - chr2_2:12136607-12136626 None:intergenic 35.0%
!!! ACAAGAGCAACTTTTTTCAC+TGG - chr2_2:12136834-12136853 None:intergenic 35.0%
! AATAGGATTGCTGAGTTGAA+AGG + chr2_2:12136918-12136937 Msa0238530:CDS 35.0%
GACCTTATATACCTGTTGAT+AGG + chr2_2:12137003-12137022 Msa0238530:CDS 35.0%
CAACTTCTTCACTAACAAAG+AGG - chr2_2:12137094-12137113 None:intergenic 35.0%
! GGAAGCAAAGTATGGATTAT+AGG - chr2_2:12137167-12137186 None:intergenic 35.0%
! TTCAGGTTAACAACGAAAGA+AGG + chr2_2:12137254-12137273 Msa0238530:CDS 35.0%
TTGCTCAAATATCACCATGT+TGG + chr2_2:12136467-12136486 Msa0238530:CDS 35.0%
TTAGATGCATCAGGTAATGA+AGG - chr2_2:12136504-12136523 None:intergenic 35.0%
TTTGTGAAGGAAGCTGAAAA+GGG - chr2_2:12136551-12136570 None:intergenic 35.0%
! TTTTGTGAAGGAAGCTGAAA+AGG - chr2_2:12136552-12136571 None:intergenic 35.0%
!! GAAGATGATGAGTTTTGTGA+AGG - chr2_2:12136564-12136583 None:intergenic 35.0%
TCTTAGACCACACTGAATTT+GGG - chr2_2:12136607-12136626 None:intergenic 35.0%
!!! ACAAGAGCAACTTTTTTCAC+TGG - chr2_2:12136834-12136853 None:intergenic 35.0%
! AATAGGATTGCTGAGTTGAA+AGG + chr2_2:12136918-12136937 Msa0238530:CDS 35.0%
GACCTTATATACCTGTTGAT+AGG + chr2_2:12137003-12137022 Msa0238530:CDS 35.0%
CAACTTCTTCACTAACAAAG+AGG - chr2_2:12137094-12137113 None:intergenic 35.0%
! GGAAGCAAAGTATGGATTAT+AGG - chr2_2:12137167-12137186 None:intergenic 35.0%
! TTCAGGTTAACAACGAAAGA+AGG + chr2_2:12137254-12137273 Msa0238530:CDS 35.0%
TGCATCAGGTAATGAAGGTT+TGG - chr2_2:12136499-12136518 None:intergenic 40.0%
!! TGAATTTGGGTTGGTCTTGA+AGG - chr2_2:12136594-12136613 None:intergenic 40.0%
CTCTTAGACCACACTGAATT+TGG - chr2_2:12136608-12136627 None:intergenic 40.0%
GCTCAAGAAGCTGTTGTTAA+TGG + chr2_2:12136714-12136733 Msa0238530:CDS 40.0%
TCAACTAGTGTCTGTGAGAA+AGG - chr2_2:12136744-12136763 None:intergenic 40.0%
! ACTGGTCTAAGCTTAGTTAG+AGG - chr2_2:12136816-12136835 None:intergenic 40.0%
! ATTGCTGAGTTGAAAGGTCT+TGG + chr2_2:12136924-12136943 Msa0238530:CDS 40.0%
CAGGTATATAAGGTCTACGA+AGG - chr2_2:12136998-12137017 None:intergenic 40.0%
CCTTCAAGAAACCTATCAAC+AGG - chr2_2:12137017-12137036 None:intergenic 40.0%
! CCTGTTGATAGGTTTCTTGA+AGG + chr2_2:12137014-12137033 Msa0238530:CDS 40.0%
! GTTGATAGGTTTCTTGAAGG+TGG + chr2_2:12137017-12137036 Msa0238530:CDS 40.0%
GTTTGTGCTTCTTTAGCAGT+AGG - chr2_2:12137050-12137069 None:intergenic 40.0%
!! ATTTCACCTTTTGGTGACAG+TGG - chr2_2:12137188-12137207 None:intergenic 40.0%
CTGTTGAAAGAGATGCTGTT+AGG + chr2_2:12137285-12137304 Msa0238530:CDS 40.0%
TCCTGCTCAAACTGCAAAAT+CGG - chr2_2:12137332-12137351 None:intergenic 40.0%
AGTGCATCAAGAATCTGAAC+AGG - chr2_2:12137356-12137375 None:intergenic 40.0%
TTTCACCAGTGATCTTAGCT+TGG - chr2_2:12137529-12137548 None:intergenic 40.0%
TAAGATCACTGGTGAAATCC+TGG + chr2_2:12137532-12137551 Msa0238530:CDS 40.0%
GAAATCCTGGAAATTGTTGC+TGG + chr2_2:12137545-12137564 Msa0238530:CDS 40.0%
TGCATCAGGTAATGAAGGTT+TGG - chr2_2:12136499-12136518 None:intergenic 40.0%
!! TGAATTTGGGTTGGTCTTGA+AGG - chr2_2:12136594-12136613 None:intergenic 40.0%
CTCTTAGACCACACTGAATT+TGG - chr2_2:12136608-12136627 None:intergenic 40.0%
GCTCAAGAAGCTGTTGTTAA+TGG + chr2_2:12136714-12136733 Msa0238530:CDS 40.0%
TCAACTAGTGTCTGTGAGAA+AGG - chr2_2:12136744-12136763 None:intergenic 40.0%
! ACTGGTCTAAGCTTAGTTAG+AGG - chr2_2:12136816-12136835 None:intergenic 40.0%
! ATTGCTGAGTTGAAAGGTCT+TGG + chr2_2:12136924-12136943 Msa0238530:CDS 40.0%
CAGGTATATAAGGTCTACGA+AGG - chr2_2:12136998-12137017 None:intergenic 40.0%
CCTTCAAGAAACCTATCAAC+AGG - chr2_2:12137017-12137036 None:intergenic 40.0%
! CCTGTTGATAGGTTTCTTGA+AGG + chr2_2:12137014-12137033 Msa0238530:CDS 40.0%
! GTTGATAGGTTTCTTGAAGG+TGG + chr2_2:12137017-12137036 Msa0238530:CDS 40.0%
GTTTGTGCTTCTTTAGCAGT+AGG - chr2_2:12137050-12137069 None:intergenic 40.0%
!! ATTTCACCTTTTGGTGACAG+TGG - chr2_2:12137188-12137207 None:intergenic 40.0%
CTGTTGAAAGAGATGCTGTT+AGG + chr2_2:12137285-12137304 Msa0238530:CDS 40.0%
TCCTGCTCAAACTGCAAAAT+CGG - chr2_2:12137332-12137351 None:intergenic 40.0%
AGTGCATCAAGAATCTGAAC+AGG - chr2_2:12137356-12137375 None:intergenic 40.0%
TTTCACCAGTGATCTTAGCT+TGG - chr2_2:12137529-12137548 None:intergenic 40.0%
TAAGATCACTGGTGAAATCC+TGG + chr2_2:12137532-12137551 Msa0238530:CDS 40.0%
GAAATCCTGGAAATTGTTGC+TGG + chr2_2:12137545-12137564 Msa0238530:CDS 40.0%
AGGTTTGGATGAGACCAACA+TGG - chr2_2:12136484-12136503 None:intergenic 45.0%
AAGGAGAGGTTAGATGCATC+AGG - chr2_2:12136513-12136532 None:intergenic 45.0%
AGACCAACCCAAATTCAGTG+TGG + chr2_2:12136597-12136616 Msa0238530:CDS 45.0%
AGACCACACTGAATTTGGGT+TGG - chr2_2:12136603-12136622 None:intergenic 45.0%
CACTGAAGCAATGAAGCTTG+TGG + chr2_2:12136671-12136690 Msa0238530:CDS 45.0%
GCTGTTCGTTGATGCTGTAA+AGG - chr2_2:12136770-12136789 None:intergenic 45.0%
TAGAGGAGCTTCGATATCGT+CGG - chr2_2:12136799-12136818 None:intergenic 45.0%
!! GTTGCTCTTGTTGTTTGCAC+TGG + chr2_2:12136843-12136862 Msa0238530:CDS 45.0%
! GTTGTTTGCACTGGTGATAG+AGG + chr2_2:12136852-12136871 Msa0238530:CDS 45.0%
GTGCTTCTTTAGCAGTAGGA+AGG - chr2_2:12137046-12137065 None:intergenic 45.0%
GTGACAGTGGAAGCAAAGTA+TGG - chr2_2:12137175-12137194 None:intergenic 45.0%
TTGCTTCCACTGTCACCAAA+AGG + chr2_2:12137179-12137198 Msa0238530:CDS 45.0%
! AAACTGTGTTGATGCTGCTG+AGG + chr2_2:12137223-12137242 Msa0238530:CDS 45.0%
TCAAATCTTGAGGGCTTTGC+AGG + chr2_2:12137397-12137416 Msa0238530:CDS 45.0%
AGGTTTGGATGAGACCAACA+TGG - chr2_2:12136484-12136503 None:intergenic 45.0%
AAGGAGAGGTTAGATGCATC+AGG - chr2_2:12136513-12136532 None:intergenic 45.0%
AGACCAACCCAAATTCAGTG+TGG + chr2_2:12136597-12136616 Msa0238530:CDS 45.0%
AGACCACACTGAATTTGGGT+TGG - chr2_2:12136603-12136622 None:intergenic 45.0%
CACTGAAGCAATGAAGCTTG+TGG + chr2_2:12136671-12136690 Msa0238530:CDS 45.0%
GCTGTTCGTTGATGCTGTAA+AGG - chr2_2:12136770-12136789 None:intergenic 45.0%
TAGAGGAGCTTCGATATCGT+CGG - chr2_2:12136799-12136818 None:intergenic 45.0%
!! GTTGCTCTTGTTGTTTGCAC+TGG + chr2_2:12136843-12136862 Msa0238530:CDS 45.0%
! GTTGTTTGCACTGGTGATAG+AGG + chr2_2:12136852-12136871 Msa0238530:CDS 45.0%
GTGCTTCTTTAGCAGTAGGA+AGG - chr2_2:12137046-12137065 None:intergenic 45.0%
GTGACAGTGGAAGCAAAGTA+TGG - chr2_2:12137175-12137194 None:intergenic 45.0%
TTGCTTCCACTGTCACCAAA+AGG + chr2_2:12137179-12137198 Msa0238530:CDS 45.0%
! AAACTGTGTTGATGCTGCTG+AGG + chr2_2:12137223-12137242 Msa0238530:CDS 45.0%
TCAAATCTTGAGGGCTTTGC+AGG + chr2_2:12137397-12137416 Msa0238530:CDS 45.0%
GAAAAGGGCTGAGAGCTGAA+CGG - chr2_2:12136536-12136555 None:intergenic 50.0%
ACTGGTGATAGAGGTCTCTG+TGG + chr2_2:12136861-12136880 Msa0238530:CDS 50.0%
! CTGCTGAGGATGAGCTTTTC+AGG + chr2_2:12137237-12137256 Msa0238530:CDS 50.0%
!! GCCGATTTTGCAGTTTGAGC+AGG + chr2_2:12137328-12137347 Msa0238530:CDS 50.0%
CAACGCCAAGCTAAGATCAC+TGG + chr2_2:12137521-12137540 Msa0238530:CDS 50.0%
CAGCACCAGCAACAATTTCC+AGG - chr2_2:12137553-12137572 None:intergenic 50.0%
GAAAAGGGCTGAGAGCTGAA+CGG - chr2_2:12136536-12136555 None:intergenic 50.0%
ACTGGTGATAGAGGTCTCTG+TGG + chr2_2:12136861-12136880 Msa0238530:CDS 50.0%
! CTGCTGAGGATGAGCTTTTC+AGG + chr2_2:12137237-12137256 Msa0238530:CDS 50.0%
!! GCCGATTTTGCAGTTTGAGC+AGG + chr2_2:12137328-12137347 Msa0238530:CDS 50.0%
CAACGCCAAGCTAAGATCAC+TGG + chr2_2:12137521-12137540 Msa0238530:CDS 50.0%
CAGCACCAGCAACAATTTCC+AGG - chr2_2:12137553-12137572 None:intergenic 50.0%
TGAGAGCTGAACGGAAGGAG+AGG - chr2_2:12136527-12136546 None:intergenic 55.0%
GGTGATAGAGGTCTCTGTGG+TGG + chr2_2:12136864-12136883 Msa0238530:CDS 55.0%
!! TGTTGCTGGTGCTGATGCCT+TGG + chr2_2:12137559-12137578 Msa0238530:CDS 55.0%
TGAGAGCTGAACGGAAGGAG+AGG - chr2_2:12136527-12136546 None:intergenic 55.0%
GGTGATAGAGGTCTCTGTGG+TGG + chr2_2:12136864-12136883 Msa0238530:CDS 55.0%
!! TGTTGCTGGTGCTGATGCCT+TGG + chr2_2:12137559-12137578 Msa0238530:CDS 55.0%
AGGGCTGAGAGCTGAACGGA+AGG - chr2_2:12136532-12136551 None:intergenic 60.0%
AGGGCTGAGAGCTGAACGGA+AGG - chr2_2:12136532-12136551 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 12136462 12137586 12136462 ID=Msa0238530;Name=Msa0238530
chr2_2 mRNA 12136462 12137586 12136462 ID=Msa0238530-mRNA-1;Parent=Msa0238530;Name=Msa0238530-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|374
chr2_2 exon 12136462 12137586 12136462 ID=Msa0238530-mRNA-1:exon:5211;Parent=Msa0238530-mRNA-1
chr2_2 CDS 12136462 12137586 12136462 ID=Msa0238530-mRNA-1:cds;Parent=Msa0238530-mRNA-1
Gene Sequence

>Msa0238530

ATGTCTTGCTCAAATATCACCATGTTGGTCTCATCCAAACCTTCATTACCTGATGCATCTAACCTCTCCTTCCGTTCAGCTCTCAGCCCTTTTCAGCTTCCTTCACAAAACTCATCATCTTCTTGCACTCCTTCAAGACCAACCCAAATTCAGTGTGGTCTAAGAGAACTTAGAAACCGTATTGACTCTGTCAAAAACACTCAGAAAATCACTGAAGCAATGAAGCTTGTGGCTGCTGCAAAAGTCAGAAGAGCTCAAGAAGCTGTTGTTAATGGCAGACCTTTCTCACAGACACTAGTTGAAGTCCTTTACAGCATCAACGAACAGCTTCAAACCGACGATATCGAAGCTCCTCTAACTAAGCTTAGACCAGTGAAAAAAGTTGCTCTTGTTGTTTGCACTGGTGATAGAGGTCTCTGTGGTGGATTCAACAATGCAATATTGAAAAAAGCTGAAAATAGGATTGCTGAGTTGAAAGGTCTTGGACTTGATTACACTATTATCAGTGTTGGTAAAAAGGGTAACTCTTATTTCCTTCGTAGACCTTATATACCTGTTGATAGGTTTCTTGAAGGTGGAAACCTTCCTACTGCTAAAGAAGCACAAACTATTGCTGATGATGTTTTCTCCCTCTTTGTTAGTGAAGAAGTTGATAAAGTTGAACTATTGTACACTAAATTTGTGTCATTAGTGAAATCAGAGCCTATAATCCATACTTTGCTTCCACTGTCACCAAAAGGTGAAATCTGTGATATTAATGGAAACTGTGTTGATGCTGCTGAGGATGAGCTTTTCAGGTTAACAACGAAAGAAGGAAAGTTAACTGTTGAAAGAGATGCTGTTAGGTCTAAGACGATTGATTTTTCGCCGATTTTGCAGTTTGAGCAGGATCCTGTTCAGATTCTTGATGCACTTTTGCCACTTTATTTGAACAGTCAAATCTTGAGGGCTTTGCAGGAATCACTTGCTAGTGAATTAGCTGCTAGAATGAGTGCTATGAGTAGTGCTTGTGATAATGCTATTGAGTTGAAGAAGAATTTGTCAAGGGTTTATAATAGACAACGCCAAGCTAAGATCACTGGTGAAATCCTGGAAATTGTTGCTGGTGCTGATGCCTTGGTATAG

Protein sequence

>Msa0238530

MSCSNITMLVSSKPSLPDASNLSFRSALSPFQLPSQNSSSSCTPSRPTQIQCGLRELRNRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSQTLVEVLYSINEQLQTDDIEAPLTKLRPVKKVALVVCTGDRGLCGGFNNAILKKAENRIAELKGLGLDYTIISVGKKGNSYFLRRPYIPVDRFLEGGNLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSEPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDAVRSKTIDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSACDNAIELKKNLSRVYNRQRQAKITGEILEIVAGADALV*