AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0508770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508770 MtrunA17_Chr3g0113311 99.281 278 2 0 1 278 1 278 0.0 567
Msa0508770 MtrunA17_Chr4g0006181 70.943 265 73 1 11 275 70 330 1.43e-132 379
Msa0508770 MtrunA17_Chr6g0462031 34.545 220 96 5 60 275 49 224 9.05e-31 115
Msa0508770 MtrunA17_Chr2g0279001 32.800 250 78 7 60 271 60 257 1.23e-29 112
Msa0508770 MtrunA17_Chr8g0345631 31.206 282 107 9 20 270 21 246 4.12e-27 106
Msa0508770 MtrunA17_Chr2g0301081 29.097 299 129 9 1 270 1 245 3.64e-25 100
Msa0508770 MtrunA17_Chr3g0133901 29.435 248 106 5 42 270 46 243 1.62e-23 96.7
Msa0508770 MtrunA17_Chr3g0092091 33.610 241 78 8 52 269 48 229 2.31e-23 95.9
Msa0508770 MtrunA17_Chr6g0476641 33.486 218 91 5 67 274 91 264 5.66e-23 95.5
Msa0508770 MtrunA17_Chr2g0318521 42.177 147 70 5 139 270 92 238 2.28e-22 93.6
Msa0508770 MtrunA17_Chr6g0453151 45.752 153 62 8 139 274 162 310 4.12e-22 94.0
Msa0508770 MtrunA17_Chr6g0453141 46.309 149 59 8 139 270 95 239 5.47e-22 92.4
Msa0508770 MtrunA17_Chr4g0051941 33.992 253 93 11 45 270 35 240 8.30e-22 92.0
Msa0508770 MtrunA17_Chr6g0453181 45.638 149 60 8 139 270 95 239 1.47e-21 91.3
Msa0508770 MtrunA17_Chr6g0453161 44.872 156 65 8 136 274 94 245 3.22e-21 93.2
Msa0508770 MtrunA17_Chr6g0453161 45.098 153 63 8 139 274 362 510 8.03e-21 92.0
Msa0508770 MtrunA17_Chr5g0447531 44.371 151 63 8 137 270 93 239 3.23e-21 90.1
Msa0508770 MtrunA17_Chr5g0448411 29.811 265 115 7 33 269 31 252 2.55e-20 88.2
Msa0508770 MtrunA17_Chr5g0448421 27.946 297 143 7 1 269 1 254 1.39e-19 85.9
Msa0508770 MtrunA17_Chr1g0157481 28.517 263 103 8 44 270 95 308 2.06e-18 83.6
Msa0508770 MtrunA17_Chr6g0464511 48.810 84 32 4 194 270 107 186 1.51e-12 65.5
Msa0508770 MtrunA17_Chr6g0453171 47.368 76 30 3 201 270 1 72 9.22e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508770 AT2G40100.1 70.522 268 78 1 11 278 10 276 4.86e-138 390
Msa0508770 AT3G08940.2 71.260 254 67 1 22 275 23 270 1.65e-128 367
Msa0508770 AT5G01530.1 76.923 221 51 0 55 275 53 273 7.35e-126 360
Msa0508770 AT2G40100.2 62.286 175 66 0 11 185 10 184 3.18e-75 228
Msa0508770 AT3G08940.1 60.479 167 60 1 22 188 23 183 4.49e-66 206
Msa0508770 AT3G54890.1 34.583 240 105 7 40 275 32 223 4.00e-34 124
Msa0508770 AT1G15820.1 34.454 238 70 7 67 271 70 254 6.72e-31 116
Msa0508770 AT3G54890.4 33.333 213 91 6 40 249 32 196 2.48e-27 105
Msa0508770 AT3G47470.1 31.879 298 106 12 1 269 1 230 8.91e-27 105
Msa0508770 AT3G61470.1 32.780 241 84 8 54 270 49 235 7.84e-26 102
Msa0508770 AT4G10340.1 35.616 219 85 7 67 274 82 255 1.57e-24 100
Msa0508770 AT1G45474.2 30.802 237 85 6 60 270 49 232 2.98e-23 95.9
Msa0508770 AT1G45474.1 30.802 237 85 6 60 270 49 232 2.98e-23 95.9
Msa0508770 AT1G29920.1 46.309 149 64 7 137 270 94 241 5.86e-23 95.5
Msa0508770 AT1G29910.1 46.309 149 64 7 137 270 94 241 5.86e-23 95.5
Msa0508770 AT1G29930.1 46.309 149 64 7 137 270 94 241 6.50e-23 95.1
Msa0508770 AT5G54270.1 42.177 147 70 4 139 270 93 239 1.08e-22 94.7
Msa0508770 AT2G34430.1 45.638 149 65 7 137 270 93 240 1.49e-22 94.4
Msa0508770 AT2G34420.1 45.638 149 65 7 137 270 92 239 1.55e-22 94.4
Msa0508770 AT3G27690.1 32.660 297 116 14 1 270 1 240 7.69e-22 92.4
Msa0508770 AT3G27690.2 32.095 296 119 13 2 270 32 272 1.13e-21 92.4
Msa0508770 AT1G19150.1 31.873 251 92 9 45 270 52 248 1.67e-21 91.7
Msa0508770 AT2G05100.1 45.638 149 60 8 139 270 95 239 2.21e-21 91.3
Msa0508770 AT2G05070.1 45.638 149 60 8 139 270 95 239 2.85e-21 90.9
Msa0508770 AT1G61520.3 30.894 246 99 7 52 269 48 250 1.83e-20 89.0
Msa0508770 AT1G61520.1 30.894 246 99 7 52 269 48 250 1.83e-20 89.0
Msa0508770 AT2G05100.2 43.537 147 62 8 139 268 95 237 1.04e-17 82.0
Msa0508770 AT1G76570.1 31.140 228 89 7 67 270 123 306 4.19e-17 80.1
Msa0508770 AT1G61520.2 30.222 225 86 7 73 269 14 195 5.17e-15 72.8

Find 104 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGATTTGTTTGGATTT+AGG 0.201972 3_4:+56999024 None:intergenic
TGACTCACTTGACCAGAATT+TGG 0.222195 3_4:-56998715 Msa0508770:CDS
GCAATTCAAGCTGCTGTTAC+AGG 0.243141 3_4:-56996185 Msa0508770:CDS
TGAAGTCTTTCTTTCTCTTC+AGG 0.258306 3_4:+56996260 None:intergenic
AGACGATCATTGAGCTAAAA+AGG 0.258510 3_4:+56996107 None:intergenic
TCTCAATTAGCACATTGATA+TGG 0.271043 3_4:-56996397 Msa0508770:CDS
TGGATTGAAGTACTAGTAAT+TGG 0.281425 3_4:-56996377 Msa0508770:CDS
AACCTTGCAGGTGATATTAT+TGG 0.288594 3_4:-56998687 Msa0508770:CDS
AAAGCCAGCACCTAAGAAAA+AGG 0.307836 3_4:-56998889 Msa0508770:CDS
CAAGGTTCTTAGCCAAATTC+TGG 0.307978 3_4:+56998703 None:intergenic
GCTTGGTGCTCTTGGTGCTT+TGG 0.323196 3_4:-56998553 Msa0508770:CDS
GATGGGCTAGTGTGGTTTCC+TGG 0.346659 3_4:-56998837 Msa0508770:CDS
AGAGTACAAACATACATAAA+TGG 0.356303 3_4:+56996002 None:intergenic
CTTAGGTGCTGGCTTTAACT+TGG 0.357661 3_4:+56998896 None:intergenic
TTCTTATCTGCATGGTGTAT+TGG 0.357661 3_4:+56999148 None:intergenic
GTTGCCATGGTGGATTTGTT+TGG 0.365784 3_4:+56999017 None:intergenic
CGTGAGTGTGAGGTTATTCA+TGG 0.369098 3_4:-56998588 Msa0508770:CDS
AATTTGGCTAAGAACCTTGC+AGG 0.371981 3_4:-56998699 Msa0508770:CDS
GTTCTTTGATCCTCTTGGTT+TGG 0.373875 3_4:-56996291 Msa0508770:CDS
GTTACAGGAAAAGGACCTAT+TGG 0.390427 3_4:-56996170 Msa0508770:CDS
GGAAAGTTCTTTGATCCTCT+TGG 0.394828 3_4:-56996296 Msa0508770:CDS
CTGGCTTTAACTTGGTGCCT+AGG 0.395823 3_4:+56998904 None:intergenic
CGACATGGTGGCGGCGGTTG+CGG 0.399441 3_4:+56998992 None:intergenic
ACCTCCGTGTACGGCTGAAA+CGG 0.403781 3_4:+56998630 None:intergenic
TGGGCTATGCTTGGTGCTCT+TGG 0.414754 3_4:-56998561 Msa0508770:CDS
AGAGATTAAGCATTCTCGTT+TGG 0.426448 3_4:-56996231 Msa0508770:CDS
TTGGCTGTTGAAGCTTTCAC+TGG 0.429779 3_4:-56998534 Msa0508770:CDS
TGACCGTGGTTTCGATCCAT+TGG 0.431164 3_4:-56998775 Msa0508770:CDS
CAAGCTGCTGTTACAGGAAA+AGG 0.433317 3_4:-56996179 Msa0508770:CDS
CATTCCGGTGGCTGAGCACC+AGG 0.445435 3_4:+56998819 None:intergenic
GTGGAAGGATCATCCTACTT+TGG 0.447717 3_4:-56996434 Msa0508770:CDS
ACGAACTCTTCCCATGTTTG+AGG 0.451082 3_4:+56998938 None:intergenic
ATTGTCCCATCGAGCCATTC+CGG 0.454311 3_4:+56998804 None:intergenic
GTGAGGTTATTCATGGAAGA+TGG 0.455594 3_4:-56998581 Msa0508770:CDS
GACCGTGGTTTCGATCCATT+GGG 0.456917 3_4:-56998774 Msa0508770:CDS
AAGGTAGCAATGAAACCAAT+AGG 0.458304 3_4:+56996155 None:intergenic
CTGCAAATACTCAACAGGTT+TGG 0.465448 3_4:+56998746 None:intergenic
AGCCACCGGAATGGCTCGAT+GGG 0.465925 3_4:-56998809 Msa0508770:CDS
TCAAACTGCAAATACTCAAC+AGG 0.466866 3_4:+56998741 None:intergenic
TGCATGGTGTATTGGATGGT+TGG 0.467324 3_4:+56999156 None:intergenic
ATCAATGTGCTAATTGAGAA+TGG 0.470549 3_4:+56996401 None:intergenic
GGCGGTTGCGGTGGTTGCCA+TGG 0.475490 3_4:+56999004 None:intergenic
TTGGTTACATTGAGTTTCAA+AGG 0.475773 3_4:-56996358 Msa0508770:CDS
AGTGTGTGACTGTGAGGAGA+AGG 0.478642 3_4:+56999109 None:intergenic
CTGCAAACCAACCTCAAACA+TGG 0.480790 3_4:-56998949 Msa0508770:CDS
TATCTTGCTTCTTATCTGCA+TGG 0.485184 3_4:+56999140 None:intergenic
TAAGCATTCTCGTTTGGCTA+TGG 0.486266 3_4:-56996225 Msa0508770:CDS
GGCTTCACATGTTATGTCAC+TGG 0.497566 3_4:+56996129 None:intergenic
TATCTGCATGGTGTATTGGA+TGG 0.505242 3_4:+56999152 None:intergenic
TGGCTCGATGGGACAATGAT+TGG 0.508330 3_4:-56998798 Msa0508770:CDS
CTTGGTGCCTAGGTTGAAGA+AGG 0.509668 3_4:+56998914 None:intergenic
GTTCGTGCCTTCTTCAACCT+AGG 0.509983 3_4:-56998921 Msa0508770:CDS
GCATTCTCGTTTGGCTATGG+TGG 0.512452 3_4:-56996222 Msa0508770:CDS
CTATGTTCAGGTAGAGTTGG+TGG 0.514446 3_4:-56996453 Msa0508770:intron
CATGGTGGCGGCGGTTGCGG+TGG 0.515542 3_4:+56998995 None:intergenic
CAGCCACCGGAATGGCTCGA+TGG 0.522740 3_4:-56998810 Msa0508770:CDS
GTGTGTGACTGTGAGGAGAA+GGG 0.522971 3_4:+56999110 None:intergenic
GTGAGAAAACAAGAAAGTGA+TGG 0.525794 3_4:-56998855 Msa0508770:CDS
CAGAGCTTGACCCAGAGAAA+AGG 0.527322 3_4:-56996331 Msa0508770:CDS
GTTTCCTGGTGCTCAGCCAC+CGG 0.530681 3_4:-56998823 Msa0508770:CDS
GATTTAGGAACAAGGTGTGT+CGG 0.531693 3_4:+56999039 None:intergenic
CTGGTGCTCAGCCACCGGAA+TGG 0.535531 3_4:-56998818 Msa0508770:CDS
ACTCTTCCCATGTTTGAGGT+TGG 0.539963 3_4:+56998942 None:intergenic
AAACTATGTTCAGGTAGAGT+TGG 0.543723 3_4:-56996456 Msa0508770:intron
CATGTTATGTCACTGGTTGA+AGG 0.546151 3_4:+56996136 None:intergenic
GGTGTCGCATGGCAAGATGC+TGG 0.547425 3_4:-56998513 Msa0508770:CDS
GTGTACGGCTGAAACGGTGT+AGG 0.555155 3_4:+56998636 None:intergenic
TGCAAACCAACCTCAAACAT+GGG 0.555282 3_4:-56998948 Msa0508770:CDS
TGGAAGAGAAAATCCAAAGT+AGG 0.556136 3_4:+56996421 None:intergenic
TGAGAAAACAAGAAAGTGAT+GGG 0.557906 3_4:-56998854 Msa0508770:CDS
TGAGGTTATTCATGGAAGAT+GGG 0.560063 3_4:-56998580 Msa0508770:CDS
AAGCTTTCACTGGTGTCGCA+TGG 0.563145 3_4:-56998524 Msa0508770:CDS
CATGGAAGATGGGCTATGCT+TGG 0.567622 3_4:-56998570 Msa0508770:CDS
ACAGGTTTGGCTAATCCCAA+TGG 0.582632 3_4:+56998759 None:intergenic
CGCATGGCAAGATGCTGGAA+AGG 0.585268 3_4:-56998508 Msa0508770:intron
AAGAAAGTGATGGGCTAGTG+TGG 0.588770 3_4:-56998845 Msa0508770:CDS
AAAATGCGACATGGTGGCGG+CGG 0.597180 3_4:+56998986 None:intergenic
TGATATTATTGGCACTAGAG+TGG 0.597745 3_4:-56998676 Msa0508770:CDS
TCAGAGGTTTCGTGAGTGTG+AGG 0.598879 3_4:-56998598 Msa0508770:CDS
CAGCTTGAATTGCAAAGATG+AGG 0.604000 3_4:+56996195 None:intergenic
TGCCAATAATATCACCTGCA+AGG 0.604262 3_4:+56998685 None:intergenic
TTTGTTTGGATTTAGGAACA+AGG 0.616228 3_4:+56999031 None:intergenic
ATGCTGCTTGTAGCAACTCA+CGG 0.618488 3_4:-56995961 Msa0508770:three_prime_UTR
GGTTGCGGTGGTTGCCATGG+TGG 0.619204 3_4:+56999007 None:intergenic
GGATCAAAGAACTTTCCACC+TGG 0.626938 3_4:+56996302 None:intergenic
GGTGTGTCGGAGGGACAAAG+TGG 0.627622 3_4:+56999052 None:intergenic
TGTACGGCTGAAACGGTGTA+GGG 0.629672 3_4:+56998637 None:intergenic
TTAGGAACAAGGTGTGTCGG+AGG 0.634868 3_4:+56999042 None:intergenic
GTTCAGGTAGAGTTGGTGGA+AGG 0.634996 3_4:-56996449 Msa0508770:intron
GTCCCATCGAGCCATTCCGG+TGG 0.639550 3_4:+56998807 None:intergenic
TAGGAACAAGGTGTGTCGGA+GGG 0.644266 3_4:+56999043 None:intergenic
ATCCCAATGGATCGAAACCA+CGG 0.649765 3_4:+56998772 None:intergenic
TACACCGTTTCAGCCGTACA+CGG 0.655431 3_4:-56998634 Msa0508770:CDS
GATCAAAGAACTTTCCACCT+GGG 0.656433 3_4:+56996303 None:intergenic
GGATCACTTGCCAAACCAAG+AGG 0.668035 3_4:+56996281 None:intergenic
TGACTGTGAGGAGAAGGGAG+TGG 0.671188 3_4:+56999115 None:intergenic
GTGTGTCGGAGGGACAAAGT+GGG 0.677501 3_4:+56999053 None:intergenic
GGGACAATGATTGGTGACCG+TGG 0.692717 3_4:-56998789 Msa0508770:CDS
GAGAAAAGGTTATACCCAGG+TGG 0.695158 3_4:-56996317 Msa0508770:CDS
TCATAGAGTGTGTGACTGTG+AGG 0.695412 3_4:+56999103 None:intergenic
ACCGTTTCAGCCGTACACGG+AGG 0.695892 3_4:-56998631 Msa0508770:CDS
CCAGAGAAAAGGTTATACCC+AGG 0.700487 3_4:-56996320 Msa0508770:CDS
AAATCCAAACAAATCCACCA+TGG 0.708304 3_4:-56999021 Msa0508770:exon
CACTAGAGTGGAGAGTACAG+AGG 0.719429 3_4:-56998664 Msa0508770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATATTGGATTAATT+TGG - chr3_4:56996888-56996907 Msa0508770:intron 10.0%
!! AATTGTGATAAAAAATTATA+TGG + chr3_4:56997158-56997177 None:intergenic 10.0%
!!! AAATTAACTAAATTTTAAGA+TGG + chr3_4:56998979-56998998 None:intergenic 10.0%
!! AAAAAACATACCAATTTATA+TGG - chr3_4:56996853-56996872 Msa0508770:intron 15.0%
!! AATGCAATTCAAATAAATAT+TGG - chr3_4:56996878-56996897 Msa0508770:intron 15.0%
!!! TTAAGTCATATTTAAAATCA+TGG - chr3_4:56996978-56996997 Msa0508770:intron 15.0%
!! TCAATAATAAAGATTATAAC+CGG + chr3_4:56997280-56997299 None:intergenic 15.0%
!! ATGAAAAGGAGTAATAAAAA+AGG + chr3_4:56996558-56996577 None:intergenic 20.0%
!! AACAATTAACAACAATGAAA+AGG + chr3_4:56996572-56996591 None:intergenic 20.0%
!! ATTGCATTATCCATATAAAT+TGG + chr3_4:56996866-56996885 None:intergenic 20.0%
!! TTATGTGTATTAGATAGATA+CGG - chr3_4:56997465-56997484 Msa0508770:intron 20.0%
!!! CACATTATTATTTGATTTGT+AGG - chr3_4:56997617-56997636 Msa0508770:intron 20.0%
!!! TTTTCTTTTAATCTCAAGTT+AGG - chr3_4:56997932-56997951 Msa0508770:intron 20.0%
!!! TTAAGTTGATCAAAAGAAAA+AGG + chr3_4:56998018-56998037 None:intergenic 20.0%
!!! TTTTTCAAATAAGATTGCAA+GGG + chr3_4:56998285-56998304 None:intergenic 20.0%
!!! TTTTTTCAAATAAGATTGCA+AGG + chr3_4:56998286-56998305 None:intergenic 20.0%
!!! ATTTTATTTTGTGGACCTTA+TGG + chr3_4:56995846-56995865 None:intergenic 25.0%
!! TTTTTCACTTCCTTTTTCTT+AGG + chr3_4:56996162-56996181 None:intergenic 25.0%
!! CATGAAAATTTTAGATGAGT+TGG - chr3_4:56996643-56996662 Msa0508770:intron 25.0%
!!! ATTTTAGATGAGTTGGATTT+CGG - chr3_4:56996650-56996669 Msa0508770:intron 25.0%
! TGGTTTGATGTTAAAAACTA+TGG - chr3_4:56996998-56997017 Msa0508770:intron 25.0%
! AGATTATAACCGGTTATTTA+CGG + chr3_4:56997270-56997289 None:intergenic 25.0%
! TGATCTTTCATTAACATCAA+TGG - chr3_4:56997364-56997383 Msa0508770:intron 25.0%
! GATCTTTCATTAACATCAAT+GGG - chr3_4:56997365-56997384 Msa0508770:intron 25.0%
!! TTAAGCTTTTTGTATTAGTG+TGG - chr3_4:56997543-56997562 Msa0508770:intron 25.0%
! TTGTATTAGTGTGGTTTATA+TGG - chr3_4:56997552-56997571 Msa0508770:intron 25.0%
!!! TCTAAAAATTTTAGCTGTGT+CGG + chr3_4:56997773-56997792 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr3_4:56997802-56997821 Msa0508770:intron 25.0%
!!! TTATTTTTATGAGCCTAGAT+CGG - chr3_4:56998189-56998208 Msa0508770:intron 25.0%
! TTGATTGAATTTGTAGTGTA+TGG + chr3_4:56998380-56998399 None:intergenic 25.0%
!! CTTTGTTTGGTAAAAAATAG+CGG + chr3_4:56998481-56998500 None:intergenic 25.0%
!!! TCTTTAAATTTGGCTTTGTT+TGG + chr3_4:56998494-56998513 None:intergenic 25.0%
! AACAAAGCCAAATTTAAAGA+CGG - chr3_4:56998494-56998513 Msa0508770:intron 25.0%
! AGAGTACAAACATACATAAA+TGG + chr3_4:56999039-56999058 None:intergenic 25.0%
TTTGTTTGGATTTAGGAACA+AGG + chr3_4:56996010-56996029 None:intergenic 30.0%
TGAGAAAACAAGAAAGTGAT+GGG - chr3_4:56996184-56996203 Msa0508770:CDS 30.0%
GTTGGATTTCGGATTAATTA+AGG - chr3_4:56996661-56996680 Msa0508770:intron 30.0%
TGCTCTTTCAATCTAAATGT+TGG + chr3_4:56996693-56996712 None:intergenic 30.0%
CAAAATTGTGGTTCATGTTT+AGG + chr3_4:56996939-56996958 None:intergenic 30.0%
CGTTAATGTGTTCAAAATTG+TGG + chr3_4:56996951-56996970 None:intergenic 30.0%
TAAGTGTGTGGAAATTAGAA+GGG - chr3_4:56997397-56997416 Msa0508770:intron 30.0%
TAGATACGGACAATGTAATA+TGG - chr3_4:56997479-56997498 Msa0508770:intron 30.0%
AAAAGCTTAACCAGGAATAT+TGG + chr3_4:56997533-56997552 None:intergenic 30.0%
CTAATACAAAAAGCTTAACC+AGG + chr3_4:56997541-56997560 None:intergenic 30.0%
! ATTTTTGTCTTCATCGTTCT+TGG + chr3_4:56997596-56997615 None:intergenic 30.0%
! TTGTTTTCAACTATGAAGCA+CGG + chr3_4:56997891-56997910 None:intergenic 30.0%
TTGTCTTACAAAACAGACAA+TGG + chr3_4:56998076-56998095 None:intergenic 30.0%
ATAAGATTGCAAGGGTAAAA+TGG + chr3_4:56998277-56998296 None:intergenic 30.0%
GTAGTGTATGGTAAAATTAG+TGG + chr3_4:56998368-56998387 None:intergenic 30.0%
!! TGCTAGTTTATAGTTGATAG+CGG + chr3_4:56998412-56998431 None:intergenic 30.0%
ATCAATGTGCTAATTGAGAA+TGG + chr3_4:56998640-56998659 None:intergenic 30.0%
TCTCAATTAGCACATTGATA+TGG - chr3_4:56998641-56998660 Msa0508770:CDS 30.0%
! TGGATTGAAGTACTAGTAAT+TGG - chr3_4:56998661-56998680 Msa0508770:CDS 30.0%
TTGGTTACATTGAGTTTCAA+AGG - chr3_4:56998680-56998699 Msa0508770:CDS 30.0%
!!! CTGCGTCACATTTTATTTTG+TGG + chr3_4:56995855-56995874 None:intergenic 35.0%
TTCTTATCTGCATGGTGTAT+TGG + chr3_4:56995893-56995912 None:intergenic 35.0%
TATCTTGCTTCTTATCTGCA+TGG + chr3_4:56995901-56995920 None:intergenic 35.0%
!! TGGTGGATTTGTTTGGATTT+AGG + chr3_4:56996017-56996036 None:intergenic 35.0%
AAATCCAAACAAATCCACCA+TGG - chr3_4:56996017-56996036 Msa0508770:three_prime_UTR 35.0%
GTGAGAAAACAAGAAAGTGA+TGG - chr3_4:56996183-56996202 Msa0508770:CDS 35.0%
TCAAACTGCAAATACTCAAC+AGG + chr3_4:56996300-56996319 None:intergenic 35.0%
AACCTTGCAGGTGATATTAT+TGG - chr3_4:56996351-56996370 Msa0508770:CDS 35.0%
TGATATTATTGGCACTAGAG+TGG - chr3_4:56996362-56996381 Msa0508770:CDS 35.0%
TGAGGTTATTCATGGAAGAT+GGG - chr3_4:56996458-56996477 Msa0508770:intron 35.0%
TCTTAACATTAGAACCTCGT+TGG + chr3_4:56996726-56996745 None:intergenic 35.0%
! ACGAGGTTCTAATGTTAAGA+CGG - chr3_4:56996726-56996745 Msa0508770:intron 35.0%
GAGTTGAACTCATGTTATTG+CGG - chr3_4:56996749-56996768 Msa0508770:intron 35.0%
ACCAACTAGACTAACATACT+TGG - chr3_4:56996790-56996809 Msa0508770:intron 35.0%
TTTCTACTGAGCTATGTTCA+TGG - chr3_4:56997241-56997260 Msa0508770:intron 35.0%
TTCTACTGAGCTATGTTCAT+GGG - chr3_4:56997242-56997261 Msa0508770:intron 35.0%
CTAAGTGTGTGGAAATTAGA+AGG - chr3_4:56997396-56997415 Msa0508770:intron 35.0%
AAGTGTGTGGAAATTAGAAG+GGG - chr3_4:56997398-56997417 Msa0508770:intron 35.0%
TCTTGAAAACCTATGAAGCA+CGG - chr3_4:56997706-56997725 Msa0508770:intron 35.0%
AGCTTATCAAAAACCGATCT+AGG + chr3_4:56998205-56998224 None:intergenic 35.0%
TCTCTGTCCGTCTTTAAATT+TGG + chr3_4:56998504-56998523 None:intergenic 35.0%
ACTACTACCAAACTATGTTC+AGG - chr3_4:56998573-56998592 Msa0508770:CDS 35.0%
AACTCTACCTGAACATAGTT+TGG + chr3_4:56998583-56998602 None:intergenic 35.0%
AAACTATGTTCAGGTAGAGT+TGG - chr3_4:56998582-56998601 Msa0508770:CDS 35.0%
TGGAAGAGAAAATCCAAAGT+AGG + chr3_4:56998620-56998639 None:intergenic 35.0%
TGAAGTCTTTCTTTCTCTTC+AGG + chr3_4:56998781-56998800 None:intergenic 35.0%
AGAGATTAAGCATTCTCGTT+TGG - chr3_4:56998807-56998826 Msa0508770:CDS 35.0%
AAGGTAGCAATGAAACCAAT+AGG + chr3_4:56998886-56998905 None:intergenic 35.0%
GACGATCATTGAGCTAAAAA+GGG + chr3_4:56998933-56998952 None:intergenic 35.0%
AGACGATCATTGAGCTAAAA+AGG + chr3_4:56998934-56998953 None:intergenic 35.0%
TATCTGCATGGTGTATTGGA+TGG + chr3_4:56995889-56995908 None:intergenic 40.0%
GATTTAGGAACAAGGTGTGT+CGG + chr3_4:56996002-56996021 None:intergenic 40.0%
TGCAAACCAACCTCAAACAT+GGG - chr3_4:56996090-56996109 Msa0508770:three_prime_UTR 40.0%
AAAGCCAGCACCTAAGAAAA+AGG - chr3_4:56996149-56996168 Msa0508770:CDS 40.0%
! ACTTCCTTTTTCTTAGGTGC+TGG + chr3_4:56996156-56996175 None:intergenic 40.0%
CTGCAAATACTCAACAGGTT+TGG + chr3_4:56996295-56996314 None:intergenic 40.0%
TGACTCACTTGACCAGAATT+TGG - chr3_4:56996323-56996342 Msa0508770:CDS 40.0%
CAAGGTTCTTAGCCAAATTC+TGG + chr3_4:56996338-56996357 None:intergenic 40.0%
AATTTGGCTAAGAACCTTGC+AGG - chr3_4:56996339-56996358 Msa0508770:CDS 40.0%
TGCCAATAATATCACCTGCA+AGG + chr3_4:56996356-56996375 None:intergenic 40.0%
ATTCCAAAAACCTCCGTGTA+CGG + chr3_4:56996420-56996439 None:intergenic 40.0%
GTGAGGTTATTCATGGAAGA+TGG - chr3_4:56996457-56996476 Msa0508770:intron 40.0%
AGCATTTACAAACACCAACG+AGG - chr3_4:56996709-56996728 Msa0508770:intron 40.0%
! CGAGGTTCTAATGTTAAGAC+GGG - chr3_4:56996727-56996746 Msa0508770:intron 40.0%
! GCCAAGTATGTTAGTCTAGT+TGG + chr3_4:56996794-56996813 None:intergenic 40.0%
TCTACTGAGCTATGTTCATG+GGG - chr3_4:56997243-56997262 Msa0508770:intron 40.0%
GACAATGTAATATGGTCCCT+CGG - chr3_4:56997487-56997506 Msa0508770:intron 40.0%
AGAATCACATACATGACCGA+GGG + chr3_4:56997506-56997525 None:intergenic 40.0%
!! GTTGTGTAGCTTGTTGGAAA+GGG + chr3_4:56997671-56997690 None:intergenic 40.0%
!! AGTTGTGTAGCTTGTTGGAA+AGG + chr3_4:56997672-56997691 None:intergenic 40.0%
! GAACAAGTTGTGTAGCTTGT+TGG + chr3_4:56997677-56997696 None:intergenic 40.0%
AAACCTATGAAGCACGGATA+CGG - chr3_4:56997712-56997731 Msa0508770:intron 40.0%
! CTGGGTATAACCTTTTCTCT+GGG + chr3_4:56998720-56998739 None:intergenic 40.0%
GATCAAAGAACTTTCCACCT+GGG + chr3_4:56998738-56998757 None:intergenic 40.0%
GGAAAGTTCTTTGATCCTCT+TGG - chr3_4:56998742-56998761 Msa0508770:CDS 40.0%
GTTCTTTGATCCTCTTGGTT+TGG - chr3_4:56998747-56998766 Msa0508770:CDS 40.0%
TAAGCATTCTCGTTTGGCTA+TGG - chr3_4:56998813-56998832 Msa0508770:CDS 40.0%
CAGCTTGAATTGCAAAGATG+AGG + chr3_4:56998846-56998865 None:intergenic 40.0%
GTTACAGGAAAAGGACCTAT+TGG - chr3_4:56998868-56998887 Msa0508770:CDS 40.0%
! CATGTTATGTCACTGGTTGA+AGG + chr3_4:56998905-56998924 None:intergenic 40.0%
TGCATGGTGTATTGGATGGT+TGG + chr3_4:56995885-56995904 None:intergenic 45.0%
TCATAGAGTGTGTGACTGTG+AGG + chr3_4:56995938-56995957 None:intergenic 45.0%
!! GTTGCCATGGTGGATTTGTT+TGG + chr3_4:56996024-56996043 None:intergenic 45.0%
GAAAAAATGCGACATGGTGG+CGG + chr3_4:56996058-56996077 None:intergenic 45.0%
!!! GCCACCATGTCGCATTTTTT+CGG - chr3_4:56996057-56996076 Msa0508770:three_prime_UTR 45.0%
! AGTGCCGAAAAAATGCGACA+TGG + chr3_4:56996064-56996083 None:intergenic 45.0%
CTGCAAACCAACCTCAAACA+TGG - chr3_4:56996089-56996108 Msa0508770:three_prime_UTR 45.0%
! ACTCTTCCCATGTTTGAGGT+TGG + chr3_4:56996099-56996118 None:intergenic 45.0%
ACGAACTCTTCCCATGTTTG+AGG + chr3_4:56996103-56996122 None:intergenic 45.0%
!! CTTAGGTGCTGGCTTTAACT+TGG + chr3_4:56996145-56996164 None:intergenic 45.0%
!! AAGAAAGTGATGGGCTAGTG+TGG - chr3_4:56996193-56996212 Msa0508770:CDS 45.0%
ATCCCAATGGATCGAAACCA+CGG + chr3_4:56996269-56996288 None:intergenic 45.0%
ACAGGTTTGGCTAATCCCAA+TGG + chr3_4:56996282-56996301 None:intergenic 45.0%
!!! CGGAGGTTTTTGGAATTCAG+AGG - chr3_4:56996424-56996443 Msa0508770:CDS 45.0%
CGTGAGTGTGAGGTTATTCA+TGG - chr3_4:56996450-56996469 Msa0508770:intron 45.0%
TTGGCTGTTGAAGCTTTCAC+TGG - chr3_4:56996504-56996523 Msa0508770:intron 45.0%
TCATGGGGACCGTAAATAAC+CGG - chr3_4:56997258-56997277 Msa0508770:intron 45.0%
GGGATCAGATACTAAGTGTG+TGG - chr3_4:56997385-56997404 Msa0508770:intron 45.0%
GGGGAAACTATGTGACAAGA+CGG - chr3_4:56997417-56997436 Msa0508770:intron 45.0%
GGGAAACTATGTGACAAGAC+GGG - chr3_4:56997418-56997437 Msa0508770:intron 45.0%
CAGAATCACATACATGACCG+AGG + chr3_4:56997507-56997526 None:intergenic 45.0%
GATTCTGTCGCCAATATTCC+TGG - chr3_4:56997520-56997539 Msa0508770:intron 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG - chr3_4:56997813-56997832 Msa0508770:intron 45.0%
CTATGTTCAGGTAGAGTTGG+TGG - chr3_4:56998585-56998604 Msa0508770:CDS 45.0%
GTGGAAGGATCATCCTACTT+TGG - chr3_4:56998604-56998623 Msa0508770:CDS 45.0%
! CCTGGGTATAACCTTTTCTC+TGG + chr3_4:56998721-56998740 None:intergenic 45.0%
CCAGAGAAAAGGTTATACCC+AGG - chr3_4:56998718-56998737 Msa0508770:CDS 45.0%
GAGAAAAGGTTATACCCAGG+TGG - chr3_4:56998721-56998740 Msa0508770:CDS 45.0%
GGATCAAAGAACTTTCCACC+TGG + chr3_4:56998739-56998758 None:intergenic 45.0%
GCAATTCAAGCTGCTGTTAC+AGG - chr3_4:56998853-56998872 Msa0508770:CDS 45.0%
CAAGCTGCTGTTACAGGAAA+AGG - chr3_4:56998859-56998878 Msa0508770:CDS 45.0%
GGCTTCACATGTTATGTCAC+TGG + chr3_4:56998912-56998931 None:intergenic 45.0%
! ATGCTGCTTGTAGCAACTCA+CGG - chr3_4:56999077-56999096 Msa0508770:five_prime_UTR 45.0%
GTGTGTGACTGTGAGGAGAA+GGG + chr3_4:56995931-56995950 None:intergenic 50.0%
AGTGTGTGACTGTGAGGAGA+AGG + chr3_4:56995932-56995951 None:intergenic 50.0%
TAGGAACAAGGTGTGTCGGA+GGG + chr3_4:56995998-56996017 None:intergenic 50.0%
TTAGGAACAAGGTGTGTCGG+AGG + chr3_4:56995999-56996018 None:intergenic 50.0%
GCCGAAAAAATGCGACATGG+TGG + chr3_4:56996061-56996080 None:intergenic 50.0%
GTTCGTGCCTTCTTCAACCT+AGG - chr3_4:56996117-56996136 Msa0508770:three_prime_UTR 50.0%
!! CTTGGTGCCTAGGTTGAAGA+AGG + chr3_4:56996127-56996146 None:intergenic 50.0%
!! CTGGCTTTAACTTGGTGCCT+AGG + chr3_4:56996137-56996156 None:intergenic 50.0%
ATTGTCCCATCGAGCCATTC+CGG + chr3_4:56996237-56996256 None:intergenic 50.0%
TGGCTCGATGGGACAATGAT+TGG - chr3_4:56996240-56996259 Msa0508770:CDS 50.0%
TGACCGTGGTTTCGATCCAT+TGG - chr3_4:56996263-56996282 Msa0508770:CDS 50.0%
GACCGTGGTTTCGATCCATT+GGG - chr3_4:56996264-56996283 Msa0508770:CDS 50.0%
! CACTAGAGTGGAGAGTACAG+AGG - chr3_4:56996374-56996393 Msa0508770:CDS 50.0%
TGTACGGCTGAAACGGTGTA+GGG + chr3_4:56996404-56996423 None:intergenic 50.0%
TACACCGTTTCAGCCGTACA+CGG - chr3_4:56996404-56996423 Msa0508770:CDS 50.0%
TCAGAGGTTTCGTGAGTGTG+AGG - chr3_4:56996440-56996459 Msa0508770:CDS 50.0%
!! CATGGAAGATGGGCTATGCT+TGG - chr3_4:56996468-56996487 Msa0508770:intron 50.0%
!! AAGCTTTCACTGGTGTCGCA+TGG - chr3_4:56996514-56996533 Msa0508770:intron 50.0%
TGATGTCTGTGTTCCCGTGA+TGG - chr3_4:56997297-56997316 Msa0508770:intron 50.0%
AAACCGACACAGCACCATCA+CGG + chr3_4:56997314-56997333 None:intergenic 50.0%
!! TGGTGCTGTGTCGGTTTCAT+AGG - chr3_4:56997317-56997336 Msa0508770:intron 50.0%
!! GGTGCTGTGTCGGTTTCATA+GGG - chr3_4:56997318-56997337 Msa0508770:intron 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + chr3_4:56997718-56997737 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG - chr3_4:56997718-56997737 Msa0508770:intron 50.0%
!! TTTTAGCTGTGTCGGCGTGT+CGG + chr3_4:56997765-56997784 None:intergenic 50.0%
GACACGACACATGTCTGACA+CGG - chr3_4:56997841-56997860 Msa0508770:intron 50.0%
ACACGACACATGTCTGACAC+GGG - chr3_4:56997842-56997861 Msa0508770:intron 50.0%
GCACGGACACTCTTCAGATA+AGG + chr3_4:56997874-56997893 None:intergenic 50.0%
!! GTTCAGGTAGAGTTGGTGGA+AGG - chr3_4:56998589-56998608 Msa0508770:CDS 50.0%
CAGAGCTTGACCCAGAGAAA+AGG - chr3_4:56998707-56998726 Msa0508770:CDS 50.0%
GGATCACTTGCCAAACCAAG+AGG + chr3_4:56998760-56998779 None:intergenic 50.0%
GCATTCTCGTTTGGCTATGG+TGG - chr3_4:56998816-56998835 Msa0508770:CDS 50.0%
TGACTGTGAGGAGAAGGGAG+TGG + chr3_4:56995926-56995945 None:intergenic 55.0%
GTGTGTCGGAGGGACAAAGT+GGG + chr3_4:56995988-56996007 None:intergenic 55.0%
!! AAAATGCGACATGGTGGCGG+CGG + chr3_4:56996055-56996074 None:intergenic 55.0%
!! GATGGGCTAGTGTGGTTTCC+TGG - chr3_4:56996201-56996220 Msa0508770:CDS 55.0%
! GGGACAATGATTGGTGACCG+TGG - chr3_4:56996249-56996268 Msa0508770:CDS 55.0%
GTGTACGGCTGAAACGGTGT+AGG + chr3_4:56996405-56996424 None:intergenic 55.0%
ACCTCCGTGTACGGCTGAAA+CGG + chr3_4:56996411-56996430 None:intergenic 55.0%
! CAGCCGTACACGGAGGTTTT+TGG - chr3_4:56996414-56996433 Msa0508770:CDS 55.0%
!! TGGGCTATGCTTGGTGCTCT+TGG - chr3_4:56996477-56996496 Msa0508770:intron 55.0%
!! GCTTGGTGCTCTTGGTGCTT+TGG - chr3_4:56996485-56996504 Msa0508770:intron 55.0%
CGCATGGCAAGATGCTGGAA+AGG - chr3_4:56996530-56996549 Msa0508770:intron 55.0%
!! TTCCCGTGATGGTGCTGTGT+CGG - chr3_4:56997308-56997327 Msa0508770:intron 55.0%
AACCGACACAGCACCATCAC+GGG + chr3_4:56997313-56997332 None:intergenic 55.0%
CACGACACATGTCTGACACG+GGG - chr3_4:56997843-56997862 Msa0508770:intron 55.0%
GGTGTGTCGGAGGGACAAAG+TGG + chr3_4:56995989-56996008 None:intergenic 60.0%
GTTTCCTGGTGCTCAGCCAC+CGG - chr3_4:56996215-56996234 Msa0508770:CDS 60.0%
AGCCACCGGAATGGCTCGAT+GGG - chr3_4:56996229-56996248 Msa0508770:CDS 60.0%
ACCGTTTCAGCCGTACACGG+AGG - chr3_4:56996407-56996426 Msa0508770:CDS 60.0%
! GGTGTCGCATGGCAAGATGC+TGG - chr3_4:56996525-56996544 Msa0508770:intron 60.0%
ACGGATACGGACACGGACAC+CGG - chr3_4:56997725-56997744 Msa0508770:intron 60.0%
CACGGACACCGGAGATGACA+CGG - chr3_4:56997736-56997755 Msa0508770:intron 60.0%
! GTCGGTGTCCGTGTCATCTC+CGG + chr3_4:56997747-56997766 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG - chr3_4:56997819-56997838 Msa0508770:intron 60.0%
GGTTGCGGTGGTTGCCATGG+TGG + chr3_4:56996034-56996053 None:intergenic 65.0%
CATTCCGGTGGCTGAGCACC+AGG + chr3_4:56996222-56996241 None:intergenic 65.0%
CTGGTGCTCAGCCACCGGAA+TGG - chr3_4:56996220-56996239 Msa0508770:CDS 65.0%
CAGCCACCGGAATGGCTCGA+TGG - chr3_4:56996228-56996247 Msa0508770:CDS 65.0%
GTCCCATCGAGCCATTCCGG+TGG + chr3_4:56996234-56996253 None:intergenic 65.0%
GGCGGTTGCGGTGGTTGCCA+TGG + chr3_4:56996037-56996056 None:intergenic 70.0%
!! CGACATGGTGGCGGCGGTTG+CGG + chr3_4:56996049-56996068 None:intergenic 70.0%
!! CATGGTGGCGGCGGTTGCGG+TGG + chr3_4:56996046-56996065 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 56995843 56999217 56995843 ID=Msa0508770;Name=Msa0508770
chr3_4 mRNA 56995843 56999217 56995843 ID=Msa0508770-mRNA-1;Parent=Msa0508770;Name=Msa0508770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=193|1|1|1|1|1|2|302|278
chr3_4 exon 56995843 56996465 56995843 ID=Msa0508770-mRNA-1:exon:12970;Parent=Msa0508770-mRNA-1
chr3_4 exon 56998509 56999217 56998509 ID=Msa0508770-mRNA-1:exon:12969;Parent=Msa0508770-mRNA-1
chr3_4 five_prime_UTR 56999025 56999217 56999025 ID=Msa0508770-mRNA-1:five_prime_utr;Parent=Msa0508770-mRNA-1
chr3_4 CDS 56998509 56999024 56998509 ID=Msa0508770-mRNA-1:cds;Parent=Msa0508770-mRNA-1
chr3_4 CDS 56996145 56996465 56996145 ID=Msa0508770-mRNA-1:cds;Parent=Msa0508770-mRNA-1
chr3_4 three_prime_UTR 56995843 56996144 56995843 ID=Msa0508770-mRNA-1:three_prime_utr;Parent=Msa0508770-mRNA-1
Gene Sequence

>Msa0508770

ATGGCAACCACCGCAACCGCCGCCACCATGTCGCATTTTTTCGGCACTAGTCTCTGCAAACCAACCTCAAACATGGGAAGAGTTCGTGCCTTCTTCAACCTAGGCACCAAGTTAAAGCCAGCACCTAAGAAAAAGGAAGTGAAAAAAGTGAGAAAACAAGAAAGTGATGGGCTAGTGTGGTTTCCTGGTGCTCAGCCACCGGAATGGCTCGATGGGACAATGATTGGTGACCGTGGTTTCGATCCATTGGGATTAGCCAAACCTGTTGAGTATTTGCAGTTTGATCTTGACTCACTTGACCAGAATTTGGCTAAGAACCTTGCAGGTGATATTATTGGCACTAGAGTGGAGAGTACAGAGGTTAACCCTACACCGTTTCAGCCGTACACGGAGGTTTTTGGAATTCAGAGGTTTCGTGAGTGTGAGGTTATTCATGGAAGATGGGCTATGCTTGGTGCTCTTGGTGCTTTGGCTGTTGAAGCTTTCACTGGTGTCGCATGGCAAGATGCTGGAAAGGTAGAGTTGGTGGAAGGATCATCCTACTTTGGATTTTCTCTTCCATTCTCAATTAGCACATTGATATGGATTGAAGTACTAGTAATTGGTTACATTGAGTTTCAAAGGAATGCAGAGCTTGACCCAGAGAAAAGGTTATACCCAGGTGGAAAGTTCTTTGATCCTCTTGGTTTGGCAAGTGATCCTGAAGAGAAAGAAAGACTTCAACTTGCAGAGATTAAGCATTCTCGTTTGGCTATGGTGGTTTTCCTCATCTTTGCAATTCAAGCTGCTGTTACAGGAAAAGGACCTATTGGTTTCATTGCTACCTTCAACCAGTGA

Protein sequence

>Msa0508770

MATTATAATMSHFFGTSLCKPTSNMGRVRAFFNLGTKLKPAPKKKEVKKVRKQESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVESTEVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGFSLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPIGFIATFNQ*