AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0978290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978290 MtrunA17_Chr6g0457151 97.902 286 5 1 1 285 1 286 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978290 AT5G38660.1 78.125 224 43 2 63 285 65 283 1.11e-122 352
Msa0978290 AT5G38660.2 79.602 201 36 1 63 263 65 260 2.28e-110 326

Find 84 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAAATTCACTTCATTCTT+TGG 0.172831 6_4:-14106028 Msa0978290:CDS
GCATTCAAATAACATCATTT+TGG 0.217106 6_4:+14110621 None:intergenic
TGCTTTATGTTTCAGGGAAA+TGG 0.263031 6_4:-14107354 Msa0978290:intron
ATGCCACGTAATCTCAAATT+TGG 0.275904 6_4:-14110723 Msa0978290:five_prime_UTR
TAAATACGCAGCTATGGTTT+TGG 0.313527 6_4:-14108633 Msa0978290:intron
CTAAATTCACTTCATTCTTT+GGG 0.316005 6_4:-14106027 Msa0978290:CDS
TGTTTGATTTAGTTAATTAC+AGG 0.331046 6_4:-14105767 Msa0978290:three_prime_UTR
AGAATGGGTGCACTTCTTCT+AGG 0.340329 6_4:+14107327 None:intergenic
GCATACTTTAATATTCTTCC+TGG 0.340893 6_4:-14108609 Msa0978290:CDS
TGAATTTATACATATTTCAT+AGG 0.341622 6_4:+14105736 None:intergenic
GGTTTCCCTCTTGCTATCAT+TGG 0.351215 6_4:-14108555 Msa0978290:CDS
ACAAGATGGAAAATATTCTT+TGG 0.355807 6_4:-14107142 Msa0978290:CDS
CTTCATGGAGAAGATGCATT+AGG 0.363770 6_4:+14105820 None:intergenic
TGGAAAATATTCTTTGGTCT+TGG 0.374306 6_4:-14107136 Msa0978290:CDS
AATAACTTACTAGACCATAT+TGG 0.381211 6_4:+14107732 None:intergenic
CCAACTTCTGCTGTAATTCC+AGG 0.392205 6_4:+14106004 None:intergenic
CTTAGCATGAAAACATGAAA+TGG 0.393570 6_4:+14110492 None:intergenic
TGCAACTCCTATTCTTAAAC+AGG 0.400679 6_4:-14108122 Msa0978290:intron
GAGATTACCTGTTTAAGAAT+AGG 0.401480 6_4:+14108115 None:intergenic
TTCACTTCATTCTTTGGGCC+TGG 0.401700 6_4:-14106022 Msa0978290:CDS
GAAGAATCAGCAGCTCTTAC+CGG 0.412466 6_4:+14110436 None:intergenic
TTCATCCCCATAGCGATATC+TGG 0.412717 6_4:+14107787 None:intergenic
CAGATTTCATTTGGTACGAT+TGG 0.414434 6_4:-14108767 Msa0978290:CDS
ACAAGTGTTCTACTATCAAT+AGG 0.423482 6_4:+14110379 None:intergenic
CCCTCTTGCTATCATTGGCA+TGG 0.426729 6_4:-14108550 Msa0978290:CDS
AAAACGATTTATACGAGGTT+CGG 0.432923 6_4:-14105861 Msa0978290:CDS
GGAGACTTTGTGAGTTGAAG+AGG 0.451225 6_4:+14110538 None:intergenic
TTCATGGAGAAGATGCATTA+GGG 0.453919 6_4:+14105821 None:intergenic
TCAGCTATAATGTTAACATA+TGG 0.454586 6_4:-14108576 Msa0978290:CDS
TTCACGAACCATCTGTAGAA+TGG 0.457796 6_4:+14107311 None:intergenic
TTTGTTTCAGACATAGCAAA+AGG 0.466061 6_4:+14110657 None:intergenic
GAGGAGGAAGACAGTGGAAC+CGG 0.468589 6_4:+14110557 None:intergenic
TATGATGGTCAAGAACTTCA+TGG 0.473983 6_4:+14105805 None:intergenic
AGATGCATTAGGGTCTGTAT+TGG 0.474973 6_4:+14105831 None:intergenic
GGTACGATTGGACTAAGTCT+TGG 0.477738 6_4:-14108755 Msa0978290:CDS
GTAATGGAGATTTCATCATC+AGG 0.482589 6_4:+14110355 None:intergenic
AAATAGAAAAGCAATTGAAA+AGG 0.486550 6_4:-14105664 Msa0978290:three_prime_UTR
TTTAGTTAATTACAGGACTT+AGG 0.487199 6_4:-14105760 Msa0978290:three_prime_UTR
GAATGGGTGCACTTCTTCTA+GGG 0.489478 6_4:+14107328 None:intergenic
ATAGCTGACCATTCAGATCC+AGG 0.491016 6_4:+14108591 None:intergenic
TCACGAACCATCTGTAGAAT+GGG 0.491160 6_4:+14107312 None:intergenic
GAGGAACTTTACCTTAGTAA+TGG 0.492160 6_4:+14110339 None:intergenic
GGAGCCACCGTGTCCTCCTC+CGG 0.494808 6_4:-14110583 Msa0978290:CDS
ATATTCTTCCTGGATCTGAA+TGG 0.495071 6_4:-14108599 Msa0978290:CDS
CCGTGTCCTCCTCCGGTCAC+CGG 0.496887 6_4:-14110576 Msa0978290:CDS
CACGGTGGCTCCACCTGGCA+TGG 0.500140 6_4:+14110594 None:intergenic
CCGGTGACCGGAGGAGGACA+CGG 0.506767 6_4:+14110576 None:intergenic
GACTTTGTGAGTTGAAGAGG+AGG 0.509455 6_4:+14110541 None:intergenic
GTGGAACCGGTGACCGGAGG+AGG 0.512074 6_4:+14110570 None:intergenic
CCACGTAATCTCAAATTTGG+CGG 0.513046 6_4:-14110720 Msa0978290:five_prime_UTR
TGATGAAATCTCCATTACTA+AGG 0.515124 6_4:-14110350 Msa0978290:intron
TTTGAATGCAAAGCCATGCC+AGG 0.515593 6_4:-14110607 Msa0978290:CDS
ATGTTACCAGATATCGCTAT+GGG 0.523814 6_4:-14107793 Msa0978290:CDS
TGAAATATGTATAAATTCAA+AGG 0.524064 6_4:-14105732 Msa0978290:three_prime_UTR
AAGACAGTGGAACCGGTGAC+CGG 0.529473 6_4:+14110564 None:intergenic
TATCATTGGCATGGCACTCA+AGG 0.540554 6_4:-14108541 Msa0978290:intron
CCTGGAATTACAGCAGAAGT+TGG 0.543795 6_4:-14106004 Msa0978290:intron
ATCTAGAGGAGGCATTGAAA+CGG 0.548375 6_4:-14107760 Msa0978290:CDS
TAAAATAATGTGATCCACAT+TGG 0.556167 6_4:+14105631 None:intergenic
TGAAAACATGAAATGGATTG+AGG 0.565908 6_4:+14110499 None:intergenic
GAATATGTGAGGCATGGCAC+TGG 0.570093 6_4:+14108172 None:intergenic
TAATGTGATCCACATTGGCT+AGG 0.572884 6_4:+14105636 None:intergenic
TCTACAGATGGTTCGTGAAG+AGG 0.578965 6_4:-14107307 Msa0978290:intron
CCGCCAAATTTGAGATTACG+TGG 0.584795 6_4:+14110720 None:intergenic
GATGTTACCAGATATCGCTA+TGG 0.596457 6_4:-14107794 Msa0978290:CDS
ACATGGATGTGAGGATATGA+TGG 0.599898 6_4:+14105790 None:intergenic
AAGTGCACCCATTCTACAGA+TGG 0.605114 6_4:-14107319 Msa0978290:CDS
GCATCTGAATATGTGAGGCA+TGG 0.612029 6_4:+14108166 None:intergenic
TGGGGATGAACAACATCTAG+AGG 0.629775 6_4:-14107774 Msa0978290:CDS
AAGGAAGAGCCTAGCCAATG+TGG 0.631463 6_4:-14105645 Msa0978290:three_prime_UTR
TGAGGATGAACAGAAACAAG+TGG 0.632231 6_4:+14110517 None:intergenic
GCCATGCCAATGATAGCAAG+AGG 0.632297 6_4:+14108549 None:intergenic
ACAGTGGAACCGGTGACCGG+AGG 0.637885 6_4:+14110567 None:intergenic
AATCAAACAACATGGATGTG+AGG 0.644863 6_4:+14105781 None:intergenic
GTTGAAGAGGAGGAAGACAG+TGG 0.646633 6_4:+14110551 None:intergenic
GAATGCAAAGCCATGCCAGG+TGG 0.662834 6_4:-14110604 Msa0978290:CDS
TGTAAGCATCTGAATATGTG+AGG 0.663294 6_4:+14108161 None:intergenic
ATTAACTAAATCAAACAACA+TGG 0.664866 6_4:+14105773 None:intergenic
CCATGCCAATGATAGCAAGA+GGG 0.670916 6_4:+14108550 None:intergenic
GGATGAACAACATCTAGAGG+AGG 0.694837 6_4:-14107771 Msa0978290:CDS
GTTGCAGAAACATACAGTTG+TGG 0.701774 6_4:+14110683 None:intergenic
GGGCGAAAACGATTTATACG+AGG 0.705348 6_4:-14105866 Msa0978290:CDS
TGTTACCAGATATCGCTATG+GGG 0.748811 6_4:-14107792 Msa0978290:CDS
GTGACCGGAGGAGGACACGG+TGG 0.756238 6_4:+14110579 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTAATTAAGTAAATATT+CGG + chr6_4:14107246-14107265 None:intergenic 10.0%
!!! AAATTTTTATTTGTTTTTTC+AGG - chr6_4:14108339-14108358 Msa0978290:intron 10.0%
!! TGTTATATTAAATATTAAAG+AGG - chr6_4:14108459-14108478 Msa0978290:intron 10.0%
!! AAGTAATTAAAAATGTATTC+AGG + chr6_4:14109326-14109345 None:intergenic 15.0%
!!! CAACTATAAATATTTTTGTA+GGG + chr6_4:14109530-14109549 None:intergenic 15.0%
!!! TCAACTATAAATATTTTTGT+AGG + chr6_4:14109531-14109550 None:intergenic 15.0%
!! TACAAAAATATTTATAGTTG+AGG - chr6_4:14109530-14109549 Msa0978290:intron 15.0%
!!! ATATCATAGTCATAAAATTT+TGG + chr6_4:14109604-14109623 None:intergenic 15.0%
!! TGAATTTATACATATTTCAT+AGG + chr6_4:14110639-14110658 None:intergenic 15.0%
!! TGAAATATGTATAAATTCAA+AGG - chr6_4:14110640-14110659 Msa0978290:five_prime_UTR 15.0%
!!! GTTGATAAATTATCTTATAG+TGG - chr6_4:14106165-14106184 Msa0978290:intron 20.0%
!!! CTTACATAAACTATTTCTAT+AGG - chr6_4:14106309-14106328 Msa0978290:intron 20.0%
!! AGCTTATCAAATAACATTAT+AGG - chr6_4:14106681-14106700 Msa0978290:intron 20.0%
!! AAGTTATAAACTACTTTAAG+TGG + chr6_4:14106840-14106859 None:intergenic 20.0%
!! TGTTTATTGTTAAATGAGTT+TGG - chr6_4:14107073-14107092 Msa0978290:intron 20.0%
!! GTTTATTGTTAAATGAGTTT+GGG - chr6_4:14107074-14107093 Msa0978290:intron 20.0%
!!! GATTTTTTTATACTTAGAGT+TGG + chr6_4:14107279-14107298 None:intergenic 20.0%
!!! AAGTAGAAAGTATATTTCAA+AGG + chr6_4:14107364-14107383 None:intergenic 20.0%
!! TTGAAATATACTTTCTACTT+CGG - chr6_4:14107364-14107383 Msa0978290:intron 20.0%
!!! TAAATTTTGCAGATTTCATT+TGG - chr6_4:14107596-14107615 Msa0978290:intron 20.0%
!! ATAAAAGGAAAACAAACATA+AGG + chr6_4:14107713-14107732 None:intergenic 20.0%
!! ATGTGAATCAAATTATATGA+TGG - chr6_4:14107872-14107891 Msa0978290:intron 20.0%
!! AGAAGAAAGATTGAATATAT+TGG + chr6_4:14108515-14108534 None:intergenic 20.0%
!! TTATTGAATTATCTTCCAAA+CGG - chr6_4:14108689-14108708 Msa0978290:intron 20.0%
!!! TAATAATATGCCTATGTTTT+AGG - chr6_4:14109203-14109222 Msa0978290:intron 20.0%
!! TAAATATCTCAGTAATGAAT+TGG + chr6_4:14109500-14109519 None:intergenic 20.0%
!! TTACTTAAAGTAAACTAAAC+AGG - chr6_4:14109890-14109909 Msa0978290:intron 20.0%
!! GAAATATATTAAAACTCCAA+AGG + chr6_4:14110298-14110317 None:intergenic 20.0%
!!! TCTTTTAATTCTCAAGATTA+AGG + chr6_4:14110426-14110445 None:intergenic 20.0%
!! ATTAACTAAATCAAACAACA+TGG + chr6_4:14110602-14110621 None:intergenic 20.0%
!!! TGTTTGATTTAGTTAATTAC+AGG - chr6_4:14110605-14110624 Msa0978290:CDS 20.0%
!! AAATAGAAAAGCAATTGAAA+AGG - chr6_4:14110708-14110727 Msa0978290:five_prime_UTR 20.0%
!!! TCAAATAACATCATTTTGGT+TGG + chr6_4:14105750-14105769 None:intergenic 25.0%
!! GCATTCAAATAACATCATTT+TGG + chr6_4:14105754-14105773 None:intergenic 25.0%
!!! TAATAGGTTTAGTTTTGTTC+CGG - chr6_4:14105917-14105936 Msa0978290:intron 25.0%
! AGATAATAAAAATGGAACTG+AGG + chr6_4:14106055-14106074 None:intergenic 25.0%
!!! TCTTTTTTTTAGGCTATGTT+TGG - chr6_4:14106072-14106091 Msa0978290:intron 25.0%
!!! TATAGTGGATGAACTTATAA+TGG - chr6_4:14106180-14106199 Msa0978290:intron 25.0%
!!! TAAGTTTTGTGAGAATGTTT+TGG + chr6_4:14106467-14106486 None:intergenic 25.0%
! AATTGAGAGAAAAAATGACA+TGG - chr6_4:14106627-14106646 Msa0978290:intron 25.0%
!! ATGACTAAAAAAGACTTGTT+TGG + chr6_4:14106749-14106768 None:intergenic 25.0%
!! GCTCATCAAAAAATGTTTTA+GGG + chr6_4:14106818-14106837 None:intergenic 25.0%
! TTATCCAAAATTCACTACAT+GGG + chr6_4:14106893-14106912 None:intergenic 25.0%
!! AATTTTATGCAAAGAAAGCA+AGG + chr6_4:14107530-14107549 None:intergenic 25.0%
! TGATATATCAATGAAGAAGA+TGG + chr6_4:14107677-14107696 None:intergenic 25.0%
! GCGTATTTACAACAAATAAA+AGG + chr6_4:14107728-14107747 None:intergenic 25.0%
! TCAGCTATAATGTTAACATA+TGG - chr6_4:14107796-14107815 Msa0978290:CDS 25.0%
!! TAATCAATGAAGCACTAAAA+CGG - chr6_4:14107907-14107926 Msa0978290:intron 25.0%
!! ATTCTTCATACTGTTTTCAT+TGG - chr6_4:14108146-14108165 Msa0978290:CDS 25.0%
!!! ATTTGTTTTTTCAGGTTACT+TGG - chr6_4:14108347-14108366 Msa0978290:intron 25.0%
! TTTCTTCTAATCACTTAAAG+AGG - chr6_4:14108527-14108546 Msa0978290:intron 25.0%
! AATAACTTACTAGACCATAT+TGG + chr6_4:14108643-14108662 None:intergenic 25.0%
! TATTATCTGCTTTATGTTTC+AGG - chr6_4:14109011-14109030 Msa0978290:intron 25.0%
! ATTATCTGCTTTATGTTTCA+GGG - chr6_4:14109012-14109031 Msa0978290:intron 25.0%
! AAACATAGGCATATTATTAG+AGG + chr6_4:14109202-14109221 None:intergenic 25.0%
! ACAAGATGGAAAATATTCTT+TGG - chr6_4:14109230-14109249 Msa0978290:intron 25.0%
!! TCAGTAATGAATTGGTAATT+TGG + chr6_4:14109492-14109511 None:intergenic 25.0%
! AATTCTCAAGAGATCAAATA+TGG - chr6_4:14109648-14109667 Msa0978290:intron 25.0%
!!! TTTTGGCTAAAGCTATAATT+TGG + chr6_4:14109697-14109716 None:intergenic 25.0%
!! TAAGTTTGTTTATCCAAAGA+GGG + chr6_4:14109922-14109941 None:intergenic 25.0%
!! TTAAGTTTGTTTATCCAAAG+AGG + chr6_4:14109923-14109942 None:intergenic 25.0%
! TCAATACAAAAAGACCAAAA+AGG - chr6_4:14110153-14110172 Msa0978290:intron 25.0%
! TTATAATGTGGTCATGAATA+GGG + chr6_4:14110194-14110213 None:intergenic 25.0%
! TTTATAATGTGGTCATGAAT+AGG + chr6_4:14110195-14110214 None:intergenic 25.0%
!! ATTTCTCAACTTGTTCTATT+TGG - chr6_4:14110313-14110332 Msa0978290:intron 25.0%
! CTAAATTCACTTCATTCTTT+GGG - chr6_4:14110345-14110364 Msa0978290:intron 25.0%
! TGTGTATGAAAATGAATGAA+TGG - chr6_4:14110453-14110472 Msa0978290:CDS 25.0%
! ATACTGACATAATATTTGTG+CGG - chr6_4:14110476-14110495 Msa0978290:CDS 25.0%
! TTTAGTTAATTACAGGACTT+AGG - chr6_4:14110612-14110631 Msa0978290:CDS 25.0%
TTTGTTTCAGACATAGCAAA+AGG + chr6_4:14105718-14105737 None:intergenic 30.0%
!! TGAAAACATGAAATGGATTG+AGG + chr6_4:14105876-14105895 None:intergenic 30.0%
CTTAGCATGAAAACATGAAA+TGG + chr6_4:14105883-14105902 None:intergenic 30.0%
! AGCTTTTCTTCAAAGGTAAT+AGG - chr6_4:14105901-14105920 Msa0978290:intron 30.0%
ACAAGTGTTCTACTATCAAT+AGG + chr6_4:14105996-14106015 None:intergenic 30.0%
TGATGAAATCTCCATTACTA+AGG - chr6_4:14106022-14106041 Msa0978290:CDS 30.0%
!!! TTTTTTTAGGCTATGTTTGG+TGG - chr6_4:14106075-14106094 Msa0978290:intron 30.0%
! CTTTTCTTACATGCTTATGA+CGG - chr6_4:14106120-14106139 Msa0978290:intron 30.0%
AAATAAGCTATAAGCTCGTA+AGG - chr6_4:14106710-14106729 Msa0978290:intron 30.0%
!!! AAAATGTTTTAGGGACTGTT+TGG + chr6_4:14106809-14106828 None:intergenic 30.0%
! GGCTCATCAAAAAATGTTTT+AGG + chr6_4:14106819-14106838 None:intergenic 30.0%
! TTTACCCATGTAGTGAATTT+TGG - chr6_4:14106886-14106905 Msa0978290:intron 30.0%
CTTATCCAAAATTCACTACA+TGG + chr6_4:14106894-14106913 None:intergenic 30.0%
GTAGTGAAGTTTGTATGAAA+AGG - chr6_4:14106940-14106959 Msa0978290:intron 30.0%
! ACTCTCAAAATCTAGTTCAA+TGG - chr6_4:14107101-14107120 Msa0978290:CDS 30.0%
TTTCACATTGTCAAAGTTAC+CGG + chr6_4:14107163-14107182 None:intergenic 30.0%
GTTTACTTGTACTCATCTTA+TGG + chr6_4:14107204-14107223 None:intergenic 30.0%
! TTATACTTAGAGTTGGTTGT+GGG + chr6_4:14107272-14107291 None:intergenic 30.0%
! TTTATACTTAGAGTTGGTTG+TGG + chr6_4:14107273-14107292 None:intergenic 30.0%
AAATATACTTTCTACTTCGG+AGG - chr6_4:14107367-14107386 Msa0978290:intron 30.0%
! TACGTGGTAGTTTGTAAATT+TGG + chr6_4:14107395-14107414 None:intergenic 30.0%
GCATACTTTAATATTCTTCC+TGG - chr6_4:14107763-14107782 Msa0978290:CDS 30.0%
! TGTACAACTTTTATAGGTGT+CGG + chr6_4:14108019-14108038 None:intergenic 30.0%
ACCTATAAAAGTTGTACACT+TGG - chr6_4:14108021-14108040 Msa0978290:intron 30.0%
! TCCAAGTGTACAACTTTTAT+AGG + chr6_4:14108025-14108044 None:intergenic 30.0%
GAGATTACCTGTTTAAGAAT+AGG + chr6_4:14108260-14108279 None:intergenic 30.0%
! TTTATGTCTTTAGAGAGACA+TGG + chr6_4:14108401-14108420 None:intergenic 30.0%
TTAAAGAGGTGAATCACATA+AGG - chr6_4:14108473-14108492 Msa0978290:intron 30.0%
!! TTGAAACGGATTTTCCAATA+TGG - chr6_4:14108626-14108645 Msa0978290:intron 30.0%
! ATTCATCTTAAAGCTCTGAT+TGG + chr6_4:14108759-14108778 None:intergenic 30.0%
!! ATCAGAGCTTTAAGATGAAT+TGG - chr6_4:14108759-14108778 Msa0978290:CDS 30.0%
TTTCCAAAAGCTCTTCAAAA+CGG - chr6_4:14108814-14108833 Msa0978290:intron 30.0%
ACTTATTAGAGCTTATCTAC+TGG + chr6_4:14108857-14108876 None:intergenic 30.0%
GTCAACATTAGAGATAGATT+TGG - chr6_4:14109122-14109141 Msa0978290:intron 30.0%
TGGAAAATATTCTTTGGTCT+TGG - chr6_4:14109236-14109255 Msa0978290:intron 30.0%
! TTGCAACATTTTTGTGTGAA+AGG + chr6_4:14109419-14109438 None:intergenic 30.0%
TCATGTAAGTGTTTATGCAT+AGG - chr6_4:14109969-14109988 Msa0978290:intron 30.0%
TTTCATAAGCTGAAATCAAC+AGG - chr6_4:14110052-14110071 Msa0978290:intron 30.0%
GTTTAGAAGAGCTTATGAAA+CGG + chr6_4:14110089-14110108 None:intergenic 30.0%
TCTGTAAATGTAAGATCCTT+TGG - chr6_4:14110279-14110298 Msa0978290:intron 30.0%
!! CTTGTTCTATTTGGTGTTAT+AGG - chr6_4:14110322-14110341 Msa0978290:intron 30.0%
GCTAAATTCACTTCATTCTT+TGG - chr6_4:14110344-14110363 Msa0978290:intron 30.0%
AAAACGATTTATACGAGGTT+CGG - chr6_4:14110511-14110530 Msa0978290:CDS 30.0%
ATGCCACGTAATCTCAAATT+TGG - chr6_4:14105649-14105668 Msa0978290:three_prime_UTR 35.0%
! CATGCTAAGCTTTTCTTCAA+AGG - chr6_4:14105894-14105913 Msa0978290:intron 35.0%
! GTAATGGAGATTTCATCATC+AGG + chr6_4:14106020-14106039 None:intergenic 35.0%
GAGGAACTTTACCTTAGTAA+TGG + chr6_4:14106036-14106055 None:intergenic 35.0%
GTAAGCGCTTATCATGATAA+GGG + chr6_4:14106294-14106313 None:intergenic 35.0%
TGTAAGCGCTTATCATGATA+AGG + chr6_4:14106295-14106314 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG - chr6_4:14106373-14106392 Msa0978290:intron 35.0%
TTAAATAAGCCAATCCAACC+AGG - chr6_4:14106502-14106521 Msa0978290:intron 35.0%
TGCAATGTACATGTGTACTT+AGG + chr6_4:14107136-14107155 None:intergenic 35.0%
!! AGTACGAGTTATTGATTCTC+AGG - chr6_4:14107566-14107585 Msa0978290:intron 35.0%
CAGATTTCATTTGGTACGAT+TGG - chr6_4:14107605-14107624 Msa0978290:intron 35.0%
TTGTTGTAAATACGCAGCTA+TGG - chr6_4:14107733-14107752 Msa0978290:intron 35.0%
! TAAATACGCAGCTATGGTTT+TGG - chr6_4:14107739-14107758 Msa0978290:intron 35.0%
ATATTCTTCCTGGATCTGAA+TGG - chr6_4:14107773-14107792 Msa0978290:CDS 35.0%
TGTAAGCATCTGAATATGTG+AGG + chr6_4:14108214-14108233 None:intergenic 35.0%
TGCAACTCCTATTCTTAAAC+AGG - chr6_4:14108250-14108269 Msa0978290:intron 35.0%
! ATGTTGTGACACTCTTTTCT+TGG - chr6_4:14108434-14108453 Msa0978290:intron 35.0%
! AGGCTCTTTTGTGCTTTTAT+AGG - chr6_4:14108547-14108566 Msa0978290:CDS 35.0%
ATGTTACCAGATATCGCTAT+GGG - chr6_4:14108579-14108598 Msa0978290:CDS 35.0%
!!! TAAGCAATTTTGAGACCGTT+TGG + chr6_4:14108707-14108726 None:intergenic 35.0%
ACTTATTAGAGCTTATCTGC+TGG + chr6_4:14108732-14108751 None:intergenic 35.0%
GTCAATCCAAATTGACCTTT+AGG - chr6_4:14108875-14108894 Msa0978290:intron 35.0%
CTTCATCCTAAAGGTCAATT+TGG + chr6_4:14108884-14108903 None:intergenic 35.0%
!! CAAATTGACCTTTAGGATGA+AGG - chr6_4:14108882-14108901 Msa0978290:intron 35.0%
TCTAGATAATGCAGCTAGTA+TGG + chr6_4:14108945-14108964 None:intergenic 35.0%
TGCTTTATGTTTCAGGGAAA+TGG - chr6_4:14109018-14109037 Msa0978290:intron 35.0%
! AAGTCTTATCCCACTAAGTT+GGG + chr6_4:14109158-14109177 None:intergenic 35.0%
TCTTGTGTGACCTAAAACAT+AGG + chr6_4:14109216-14109235 None:intergenic 35.0%
!! ATGTTTTAGGTCACACAAGA+TGG - chr6_4:14109216-14109235 Msa0978290:intron 35.0%
GTTGCAATGATACGAATTGT+CGG - chr6_4:14109432-14109451 Msa0978290:intron 35.0%
AAACCTATAAAACCAGCTCA+TGG - chr6_4:14109577-14109596 Msa0978290:intron 35.0%
! TAAAATTTTGGACCATGAGC+TGG + chr6_4:14109592-14109611 None:intergenic 35.0%
TCTCAAGAGATCAAATATGG+TGG - chr6_4:14109651-14109670 Msa0978290:intron 35.0%
!! TATAGCTTTAGCCAAAACCA+TGG - chr6_4:14109700-14109719 Msa0978290:intron 35.0%
!!! CAGACTCTTGTTTTGTTTGA+CGG + chr6_4:14109753-14109772 None:intergenic 35.0%
AAACAGGTTTAAACCCTCTT+TGG - chr6_4:14109906-14109925 Msa0978290:intron 35.0%
! TAGTACTACTAAGGCCTTTT+TGG + chr6_4:14110170-14110189 None:intergenic 35.0%
! GAATAGGGTTAGTACTACTA+AGG + chr6_4:14110179-14110198 None:intergenic 35.0%
CTCTCTGTCTGTTTATAATG+TGG + chr6_4:14110206-14110225 None:intergenic 35.0%
TTCATGGAGAAGATGCATTA+GGG + chr6_4:14110554-14110573 None:intergenic 35.0%
TATGATGGTCAAGAACTTCA+TGG + chr6_4:14110570-14110589 None:intergenic 35.0%
AATCAAACAACATGGATGTG+AGG + chr6_4:14110594-14110613 None:intergenic 35.0%
CCACGTAATCTCAAATTTGG+CGG - chr6_4:14105652-14105671 Msa0978290:three_prime_UTR 40.0%
GTTGCAGAAACATACAGTTG+TGG + chr6_4:14105692-14105711 None:intergenic 40.0%
TGAGGATGAACAGAAACAAG+TGG + chr6_4:14105858-14105877 None:intergenic 40.0%
CTAGCTGATTGAACTCTGTT+TGG - chr6_4:14106237-14106256 Msa0978290:intron 40.0%
TAAGCTCGTAAGGAAAACAG+CGG - chr6_4:14106720-14106739 Msa0978290:intron 40.0%
ATCCAGAACTTACACAATGC+CGG - chr6_4:14106991-14107010 Msa0978290:intron 40.0%
AACTTACACAATGCCGGAAT+AGG - chr6_4:14106997-14107016 Msa0978290:intron 40.0%
CACATGTACATTGCATAGTC+CGG - chr6_4:14107141-14107160 Msa0978290:CDS 40.0%
TACAAACTACCACGTACAGT+TGG - chr6_4:14107399-14107418 Msa0978290:intron 40.0%
! TAGATGTGTCGATGTGTCAA+TGG - chr6_4:14108076-14108095 Msa0978290:intron 40.0%
! TGAGCTATGGAGTACTATCA+CGG + chr6_4:14108114-14108133 None:intergenic 40.0%
TACTGAAGAGCTATGAGCTA+TGG + chr6_4:14108127-14108146 None:intergenic 40.0%
GAGTTCTGCATACTGCAAAA+AGG + chr6_4:14108177-14108196 None:intergenic 40.0%
! TGTCTTTAGAGAGACATGGA+GGG + chr6_4:14108397-14108416 None:intergenic 40.0%
! ATGTCTTTAGAGAGACATGG+AGG + chr6_4:14108398-14108417 None:intergenic 40.0%
GATGTTACCAGATATCGCTA+TGG - chr6_4:14108578-14108597 Msa0978290:CDS 40.0%
TGTTACCAGATATCGCTATG+GGG - chr6_4:14108580-14108599 Msa0978290:CDS 40.0%
!! ATCTAGAGGAGGCATTGAAA+CGG - chr6_4:14108612-14108631 Msa0978290:CDS 40.0%
!!! AGACCGTTTTGAAGAGCTTT+TGG + chr6_4:14108820-14108839 None:intergenic 40.0%
! CTTTTGCTCCTTCATCCTAA+AGG + chr6_4:14108893-14108912 None:intergenic 40.0%
! ATTGCAACAAGAGCACATAG+AGG + chr6_4:14108979-14108998 None:intergenic 40.0%
TCACGAACCATCTGTAGAAT+GGG + chr6_4:14109063-14109082 None:intergenic 40.0%
TTCACGAACCATCTGTAGAA+TGG + chr6_4:14109064-14109083 None:intergenic 40.0%
TAATAGACGACCCAACTTAG+TGG - chr6_4:14109145-14109164 Msa0978290:intron 40.0%
AATAGACGACCCAACTTAGT+GGG - chr6_4:14109146-14109165 Msa0978290:intron 40.0%
! GAAGTCTTATCCCACTAAGT+TGG + chr6_4:14109159-14109178 None:intergenic 40.0%
!!! TTCTTTGGTCTTGGTTTTCG+AGG - chr6_4:14109245-14109264 Msa0978290:intron 40.0%
! GTCAGATTTTGAACAGAGAC+AGG - chr6_4:14109284-14109303 Msa0978290:intron 40.0%
CTTACCTCTTCATGAGCATA+AGG - chr6_4:14109365-14109384 Msa0978290:intron 40.0%
GTTTCCTTATGCTCATGAAG+AGG + chr6_4:14109372-14109391 None:intergenic 40.0%
AAGCATTCCACTCTGATCAA+AGG - chr6_4:14109465-14109484 Msa0978290:intron 40.0%
ATTTGGTCCTTTGATCAGAG+TGG + chr6_4:14109475-14109494 None:intergenic 40.0%
!!! GTTTTGTTTGACGGTTGGAT+TGG + chr6_4:14109744-14109763 None:intergenic 40.0%
!!! CTCTTGTTTTGTTTGACGGT+TGG + chr6_4:14109749-14109768 None:intergenic 40.0%
ACGAAAAAAGTTCTTCCTCC+AGG + chr6_4:14109810-14109829 None:intergenic 40.0%
! TTCTAGAAGCAGTCACTCTA+AGG + chr6_4:14110235-14110254 None:intergenic 40.0%
TGACATAATATTTGTGCGGC+AGG - chr6_4:14110480-14110499 Msa0978290:CDS 40.0%
TAATATTTGTGCGGCAGGTA+AGG - chr6_4:14110485-14110504 Msa0978290:CDS 40.0%
AATATTTGTGCGGCAGGTAA+GGG - chr6_4:14110486-14110505 Msa0978290:CDS 40.0%
AGATGCATTAGGGTCTGTAT+TGG + chr6_4:14110544-14110563 None:intergenic 40.0%
CTTCATGGAGAAGATGCATT+AGG + chr6_4:14110555-14110574 None:intergenic 40.0%
ACATGGATGTGAGGATATGA+TGG + chr6_4:14110585-14110604 None:intergenic 40.0%
! CCGCCAAATTTGAGATTACG+TGG + chr6_4:14105655-14105674 None:intergenic 45.0%
TTTGAATGCAAAGCCATGCC+AGG - chr6_4:14105765-14105784 Msa0978290:three_prime_UTR 45.0%
! GACTTTGTGAGTTGAAGAGG+AGG + chr6_4:14105834-14105853 None:intergenic 45.0%
! GGAGACTTTGTGAGTTGAAG+AGG + chr6_4:14105837-14105856 None:intergenic 45.0%
GAAGAATCAGCAGCTCTTAC+CGG + chr6_4:14105939-14105958 None:intergenic 45.0%
CTTACCAAACACTACAAGCC+TGG + chr6_4:14106523-14106542 None:intergenic 45.0%
TTCCGGCATTGTGTAAGTTC+TGG + chr6_4:14106996-14107015 None:intergenic 45.0%
ACACAATGCCGGAATAGGTA+TGG - chr6_4:14107002-14107021 Msa0978290:intron 45.0%
TGATGCGTCCATACCTATTC+CGG + chr6_4:14107013-14107032 None:intergenic 45.0%
TACCACGTACAGTTGGAGTT+TGG - chr6_4:14107406-14107425 Msa0978290:intron 45.0%
ACCACGTACAGTTGGAGTTT+GGG - chr6_4:14107407-14107426 Msa0978290:intron 45.0%
GGTACGATTGGACTAAGTCT+TGG - chr6_4:14107617-14107636 Msa0978290:intron 45.0%
ATAGCTGACCATTCAGATCC+AGG + chr6_4:14107784-14107803 None:intergenic 45.0%
! GGTTTCCCTCTTGCTATCAT+TGG - chr6_4:14107817-14107836 Msa0978290:intron 45.0%
CCATGCCAATGATAGCAAGA+GGG + chr6_4:14107825-14107844 None:intergenic 45.0%
TATCATTGGCATGGCACTCA+AGG - chr6_4:14107831-14107850 Msa0978290:intron 45.0%
ACACCTTCGACCTTAAGTGT+CGG - chr6_4:14108046-14108065 Msa0978290:intron 45.0%
!! CTATGTAGCACCGACACTTA+AGG + chr6_4:14108059-14108078 None:intergenic 45.0%
GCATCTGAATATGTGAGGCA+TGG + chr6_4:14108209-14108228 None:intergenic 45.0%
TTCATCCCCATAGCGATATC+TGG + chr6_4:14108588-14108607 None:intergenic 45.0%
TGGGGATGAACAACATCTAG+AGG - chr6_4:14108598-14108617 Msa0978290:CDS 45.0%
GGATGAACAACATCTAGAGG+AGG - chr6_4:14108601-14108620 Msa0978290:CDS 45.0%
GCTGCATTATCTAGACACTG+AGG - chr6_4:14108950-14108969 Msa0978290:intron 45.0%
GAATGGGTGCACTTCTTCTA+GGG + chr6_4:14109047-14109066 None:intergenic 45.0%
AGAATGGGTGCACTTCTTCT+AGG + chr6_4:14109048-14109067 None:intergenic 45.0%
AAGTGCACCCATTCTACAGA+TGG - chr6_4:14109053-14109072 Msa0978290:intron 45.0%
TCTACAGATGGTTCGTGAAG+AGG - chr6_4:14109065-14109084 Msa0978290:intron 45.0%
!!! GGACCATGAGCTGGTTTTAT+AGG + chr6_4:14109583-14109602 None:intergenic 45.0%
!!! GCTCCAAGTGTACTTTTTCC+TGG - chr6_4:14109789-14109808 Msa0978290:intron 45.0%
! CCTCCAGGAAAAAGTACACT+TGG + chr6_4:14109795-14109814 None:intergenic 45.0%
!!! CCAAGTGTACTTTTTCCTGG+AGG - chr6_4:14109792-14109811 Msa0978290:intron 45.0%
TTCACTTCATTCTTTGGGCC+TGG - chr6_4:14110350-14110369 Msa0978290:intron 45.0%
CCAACTTCTGCTGTAATTCC+AGG + chr6_4:14110371-14110390 None:intergenic 45.0%
CCTGGAATTACAGCAGAAGT+TGG - chr6_4:14110368-14110387 Msa0978290:CDS 45.0%
GGGCGAAAACGATTTATACG+AGG - chr6_4:14110506-14110525 Msa0978290:CDS 45.0%
!! TAAAAAAAAGATAATAAAAA+TGG + chr6_4:14106063-14106082 None:intergenic 5.0%
!!! ATTTTTATTATCTTTTTTTT+AGG - chr6_4:14106062-14106081 Msa0978290:intron 5.0%
GTTGAAGAGGAGGAAGACAG+TGG + chr6_4:14105824-14105843 None:intergenic 50.0%
CACTACAAGCCTGGTTGGAT+TGG + chr6_4:14106514-14106533 None:intergenic 50.0%
CCAAACACTACAAGCCTGGT+TGG + chr6_4:14106519-14106538 None:intergenic 50.0%
CCAACCAGGCTTGTAGTGTT+TGG - chr6_4:14106516-14106535 Msa0978290:intron 50.0%
TCCCAAACTCCAACTGTACG+TGG + chr6_4:14107411-14107430 None:intergenic 50.0%
! CCCTCTTGCTATCATTGGCA+TGG - chr6_4:14107822-14107841 Msa0978290:intron 50.0%
GCCATGCCAATGATAGCAAG+AGG + chr6_4:14107826-14107845 None:intergenic 50.0%
!! TCGTATGGCACTGACACATG+TGG + chr6_4:14107992-14108011 None:intergenic 50.0%
!! ATAGGTGTCGGACACTCGTA+TGG + chr6_4:14108007-14108026 None:intergenic 50.0%
! TGTGTCGATGTGTCAATGGC+TGG - chr6_4:14108080-14108099 Msa0978290:intron 50.0%
GAATATGTGAGGCATGGCAC+TGG + chr6_4:14108203-14108222 None:intergenic 50.0%
!! GGTCTTGGTTTTCGAGGCTA+AGG - chr6_4:14109251-14109270 Msa0978290:intron 50.0%
!! CGGTTGGATTGGCACAATCA+CGG + chr6_4:14109733-14109752 None:intergenic 50.0%
AAGGAAGAGCCTAGCCAATG+TGG - chr6_4:14110727-14110746 Msa0978290:five_prime_UTR 50.0%
GAATGCAAAGCCATGCCAGG+TGG - chr6_4:14105768-14105787 Msa0978290:three_prime_UTR 55.0%
AAGACAGTGGAACCGGTGAC+CGG + chr6_4:14105811-14105830 None:intergenic 55.0%
GAGGAGGAAGACAGTGGAAC+CGG + chr6_4:14105818-14105837 None:intergenic 55.0%
! GCACCGACACTTAAGGTCGA+AGG + chr6_4:14108052-14108071 None:intergenic 55.0%
! ACGGCGAGTCACCATGGTTT+TGG + chr6_4:14109714-14109733 None:intergenic 55.0%
ACAATCACGGCGAGTCACCA+TGG + chr6_4:14109720-14109739 None:intergenic 55.0%
ACAGTGGAACCGGTGACCGG+AGG + chr6_4:14105808-14105827 None:intergenic 65.0%
CACGGTGGCTCCACCTGGCA+TGG + chr6_4:14105781-14105800 None:intergenic 70.0%
GAGGACACGGTGGCTCCACC+TGG + chr6_4:14105786-14105805 None:intergenic 70.0%
GGAGCCACCGTGTCCTCCTC+CGG - chr6_4:14105789-14105808 Msa0978290:three_prime_UTR 70.0%
GTGACCGGAGGAGGACACGG+TGG + chr6_4:14105796-14105815 None:intergenic 70.0%
CCGGTGACCGGAGGAGGACA+CGG + chr6_4:14105799-14105818 None:intergenic 70.0%
CCGTGTCCTCCTCCGGTCAC+CGG - chr6_4:14105796-14105815 Msa0978290:three_prime_UTR 70.0%
GTGGAACCGGTGACCGGAGG+AGG + chr6_4:14105805-14105824 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 14105638 14110756 14105638 ID=Msa0978290;Name=Msa0978290
chr6_4 mRNA 14105638 14110756 14105638 ID=Msa0978290-mRNA-1;Parent=Msa0978290;Name=Msa0978290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=118|1|1|1|1|1|9|184|286
chr6_4 exon 14105638 14105892 14105638 ID=Msa0978290-mRNA-1:exon:4627;Parent=Msa0978290-mRNA-1
chr6_4 exon 14106005 14106050 14106005 ID=Msa0978290-mRNA-1:exon:4626;Parent=Msa0978290-mRNA-1
chr6_4 exon 14107089 14107169 14107089 ID=Msa0978290-mRNA-1:exon:4625;Parent=Msa0978290-mRNA-1
chr6_4 exon 14107308 14107361 14107308 ID=Msa0978290-mRNA-1:exon:4624;Parent=Msa0978290-mRNA-1
chr6_4 exon 14107742 14107825 14107742 ID=Msa0978290-mRNA-1:exon:4623;Parent=Msa0978290-mRNA-1
chr6_4 exon 14108123 14108209 14108123 ID=Msa0978290-mRNA-1:exon:4622;Parent=Msa0978290-mRNA-1
chr6_4 exon 14108542 14108644 14108542 ID=Msa0978290-mRNA-1:exon:4621;Parent=Msa0978290-mRNA-1
chr6_4 exon 14108740 14108786 14108740 ID=Msa0978290-mRNA-1:exon:4620;Parent=Msa0978290-mRNA-1
chr6_4 exon 14110351 14110756 14110351 ID=Msa0978290-mRNA-1:exon:4619;Parent=Msa0978290-mRNA-1
chr6_4 five_prime_UTR 14110639 14110756 14110639 ID=Msa0978290-mRNA-1:five_prime_utr;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14110351 14110638 14110351 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14108740 14108786 14108740 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14108542 14108644 14108542 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14108123 14108209 14108123 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14107742 14107825 14107742 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14107308 14107361 14107308 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14107089 14107169 14107089 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14106005 14106050 14106005 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 CDS 14105822 14105892 14105822 ID=Msa0978290-mRNA-1:cds;Parent=Msa0978290-mRNA-1
chr6_4 three_prime_UTR 14105638 14105821 14105638 ID=Msa0978290-mRNA-1:three_prime_utr;Parent=Msa0978290-mRNA-1
Gene Sequence

>Msa0978290

ATGATGTTATTTGAATGCAAAGCCATGCCAGGTGGAGCCACCGTGTCCTCCTCCGGTCACCGGTTCCACTGTCTTCCTCCTCTTCAACTCACAAAGTCTCCACTTGTTTCTGTTCATCCTCAATCCATTTCATGTTTTCATGCTAAGCTTTTCTTCAAAGGTAATAGGTTTAGTTTTGTTCCGGTAAGAGCTGCTGATTCTTCAACTACTACAGCTTCACAGTCTTCTTCTGATGTTCCTATTGATAGTAGAACACTTGTTCCTGATGATGAAATCTCCATTACTAAGATTTCATTTGGTACGATTGGACTAAGTCTTGGAGTCTCACTCTTGTCCTATGGTTTTGGAGCATACTTTAATATTCTTCCTGGATCTGAATGGTCAGCTATAATGTTAACATATGGTTTCCCTCTTGCTATCATTGGCATGGCACTCAAGTATGCAGAACTCAAGCCAGTGCCATGCCTCACATATTCAGATGCTTACAAATTGCAAGAAAAATGTGCAACTCCTATTCTTAAACAGGTGAAGAGTGATGTTACCAGATATCGCTATGGGGATGAACAACATCTAGAGGAGGCATTGAAACGGATTTTCCAATATGGTCTAGGAAATGGAATCCCTAGAAGAAGTGCACCCATTCTACAGATGGTTCGTGAAGAGGTCACACAAGATGGAAAATATTCTTTGGTCTTGGTTTTCGAGGCTAAGGCTCTGAAGTTGTCAGATTTTGAACAGAGACAGGCTAAATTCACTTCATTCTTTGGGCCTGGAATTACAGCAGAAGTTGGTAAGGGCGAAAACGATTTATACGAGGTTCGGCTTATCTCCAATACAGACCCTAATGCATCTTCTCCATGA

Protein sequence

>Msa0978290

MMLFECKAMPGGATVSSSGHRFHCLPPLQLTKSPLVSVHPQSISCFHAKLFFKGNRFSFVPVRAADSSTTTASQSSSDVPIDSRTLVPDDEISITKISFGTIGLSLGVSLLSYGFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYSDAYKLQEKCATPILKQVKSDVTRYRYGDEQHLEEALKRIFQYGLGNGIPRRSAPILQMVREEVTQDGKYSLVLVFEAKALKLSDFEQRQAKFTSFFGPGITAEVGKGENDLYEVRLISNTDPNASSP*