AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1279240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279240 MtrunA17_Chr8g0369191 90.839 644 24 5 1 618 1 635 0.0 1017
Msa1279240 MtrunA17_Chr3g0133891 49.251 668 256 12 24 618 288 945 5.52e-169 506
Msa1279240 MtrunA17_Chr1g0153431 45.507 690 282 16 3 617 246 916 9.28e-144 440
Msa1279240 MtrunA17_Chr3g0102681 29.285 601 307 20 3 527 13 571 3.77e-19 91.7
Msa1279240 MtrunA17_Chr4g0013151 29.412 238 158 3 298 528 255 489 5.15e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279240 AT2G26570.1 45.815 681 274 16 7 615 148 805 1.09e-149 452
Msa1279240 AT2G26570.2 45.815 681 274 16 7 615 148 805 1.09e-149 452
Msa1279240 AT4G33390.1 43.713 668 274 11 16 615 145 778 7.71e-131 402
Msa1279240 AT5G42880.1 39.123 570 292 8 3 530 114 670 1.98e-82 275
Msa1279240 AT1G45545.2 36.037 641 313 15 26 614 155 750 3.31e-75 255
Msa1279240 AT1G45545.1 36.037 641 313 15 26 614 154 749 5.37e-75 254
Msa1279240 AT5G55860.1 27.576 660 341 24 27 589 22 641 1.88e-13 73.9

Find 89 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAGATTGGACATGAATT+TGG 0.194459 8_3:-16134049 Msa1279240:CDS
GGAACAGCTATAATATTAAT+AGG 0.223260 8_3:+16131871 None:intergenic
TCCAATTCTTCAGCTGTATT+TGG 0.232993 8_3:+16134022 None:intergenic
TTAAGACCAGAATCAGAATT+TGG 0.238508 8_3:+16134552 None:intergenic
TTCCTTCTTTCTTTCTTCAT+TGG 0.249061 8_3:+16133394 None:intergenic
AGAGGAAGATGCTTCCAATT+TGG 0.255053 8_3:+16133478 None:intergenic
ACTTCACCAAATTCTGATTC+TGG 0.286767 8_3:-16134558 Msa1279240:CDS
CCAACCTGACTAGGGGATTC+TGG 0.296780 8_3:+16134588 None:intergenic
GCTGCTGCTTGAAGTTTCTT+AGG 0.302328 8_3:+16133028 None:intergenic
AACCGAGTTAGCAGCATATA+TGG 0.303826 8_3:-16133438 Msa1279240:CDS
TTGTGCTTTGGCTTCAAAAC+TGG 0.316051 8_3:+16133865 None:intergenic
ACCAAATACAGCTGAAGAAT+TGG 0.316647 8_3:-16134023 Msa1279240:CDS
TTCAACCTCAAGTTGTGCTT+TGG 0.326913 8_3:+16133853 None:intergenic
GAATGAAGCAAAAGAGATTA+TGG 0.343738 8_3:-16133059 Msa1279240:CDS
CAATGTAGCTAAGTTTGCTT+TGG 0.351945 8_3:+16132925 None:intergenic
AAGAGTTCTCAAATCCAAAT+TGG 0.363045 8_3:-16133492 Msa1279240:CDS
TAGTGCTGCAGTTTCGGAAT+TGG 0.366822 8_3:-16133819 Msa1279240:CDS
AAGAATTACATTCACTTGCT+TGG 0.371258 8_3:+16132025 None:intergenic
AATGCATAGTGCTGCAGTTT+CGG 0.372224 8_3:-16133825 Msa1279240:CDS
GAGGAGTTCGGTGAAGAGTT+TGG 0.382248 8_3:+16132226 None:intergenic
AGCTTCAATATTGCTTCAAT+CGG 0.394447 8_3:-16133212 Msa1279240:CDS
AAAGATGCTGTGTCCAAGTT+TGG 0.401818 8_3:-16134492 Msa1279240:CDS
GAAATCATTGTTTCCTTCAA+AGG 0.403794 8_3:-16132080 Msa1279240:CDS
AGCAGTTTGAGCTAATGATT+TGG 0.404652 8_3:+16132988 None:intergenic
GGTGAACAGAGAAGCAAGAT+TGG 0.407271 8_3:-16134061 Msa1279240:intron
GTGTAGAAAGAGATGAGCTT+CGG 0.429173 8_3:-16133955 Msa1279240:CDS
AATAATAATAATGTTGAAGC+TGG 0.438316 8_3:-16132136 Msa1279240:CDS
GTCCACTATTCCTCCAAACT+TGG 0.440048 8_3:+16134479 None:intergenic
AAGAACATGACAACCTTTGA+AGG 0.442645 8_3:+16132067 None:intergenic
GGAATCTGAATTGAGAAGCT+TGG 0.445293 8_3:-16132458 Msa1279240:CDS
TGTAGAAAGAGATGAGCTTC+GGG 0.448050 8_3:-16133954 Msa1279240:CDS
TGACTAGGGGATTCTGGTTG+TGG 0.452920 8_3:+16134594 None:intergenic
GAACAGCTATAATATTAATA+GGG 0.453559 8_3:+16131872 None:intergenic
TGTTGAAGCTGGACCAGCTT+CGG 0.456511 8_3:-16132125 Msa1279240:CDS
TTCGACTCAAACGGCGCACA+TGG 0.465039 8_3:-16133627 Msa1279240:CDS
AACCCGTAGAACTCAGAGTC+TGG 0.472245 8_3:-16134451 Msa1279240:CDS
GTAGTAGAGGTAGTATCTAA+AGG 0.480026 8_3:+16132190 None:intergenic
CTCCAGACTCTGAGTTCTAC+GGG 0.484642 8_3:+16134449 None:intergenic
AGTTGCAGTAGTGGTAGTAG+AGG 0.487571 8_3:+16132177 None:intergenic
GTTTCATCACCAACCTGACT+AGG 0.491177 8_3:+16134579 None:intergenic
GTCCAAGTTTGGAGGAATAG+TGG 0.491684 8_3:-16134481 Msa1279240:CDS
CCTCCAGACTCTGAGTTCTA+CGG 0.494095 8_3:+16134448 None:intergenic
CGGAGTAGTAGTTGCAGTAG+TGG 0.496410 8_3:+16132168 None:intergenic
GCTAAGTAAGAGAACTCAAA+AGG 0.497779 8_3:-16132539 Msa1279240:CDS
ACTTGTGATTCGCAAAATTG+AGG 0.498578 8_3:-16133915 Msa1279240:CDS
GATTCGCAAAATTGAGGAGC+TGG 0.499740 8_3:-16133909 Msa1279240:CDS
ACAACCAGAATCCCCTAGTC+AGG 0.501202 8_3:-16134592 Msa1279240:CDS
CAAAGCAAACTTAGCTACAT+TGG 0.504952 8_3:-16132924 Msa1279240:CDS
GTCATTGATTTCGACTCAAA+CGG 0.505905 8_3:-16133636 Msa1279240:CDS
TCTTCACCGAACTCCTCAAA+GGG 0.506265 8_3:-16132220 Msa1279240:CDS
AACCAATGAAGAAAGAAAGA+AGG 0.513814 8_3:-16133396 Msa1279240:CDS
CTCAGCTGTTAAATCTTCCA+CGG 0.521608 8_3:+16133676 None:intergenic
TAAAGATTCAATCAAAGCAT+TGG 0.524472 8_3:-16132650 Msa1279240:CDS
TGAAGAGCTGTGTGTAAGAA+GGG 0.527955 8_3:-16132416 Msa1279240:CDS
GAAGCCGAGGAACAAGCATC+AGG 0.528541 8_3:-16133605 Msa1279240:CDS
TGAACTCGAACAATCAGAAA+AGG 0.533244 8_3:-16133549 Msa1279240:CDS
TTCCATATATGCTGCTAACT+CGG 0.533266 8_3:+16133436 None:intergenic
TAGAACAAGAGTTGAGGACA+TGG 0.534282 8_3:-16132336 Msa1279240:CDS
AACTAGTCTTATTTCTGATG+AGG 0.537495 8_3:-16131986 Msa1279240:three_prime_UTR
GACGCCTGATGCTTGTTCCT+CGG 0.540978 8_3:+16133601 None:intergenic
CTCTTCACCGAACTCCTCAA+AGG 0.545691 8_3:-16132221 Msa1279240:CDS
GGAGGCTGTTGCAGCATCCA+AGG 0.547080 8_3:-16133711 Msa1279240:CDS
AGAACAAAGAAAAGCTAATG+AGG 0.557400 8_3:-16132302 Msa1279240:CDS
TTTCAAATCAAGCAACAAAG+AGG 0.562874 8_3:+16133460 None:intergenic
AGCTGAGTTAATTGCAACAA+AGG 0.564213 8_3:-16133660 Msa1279240:CDS
AGAAAGAAAGAAGGAACTAG+AGG 0.565108 8_3:-16133387 Msa1279240:intron
TTTCATCACCAACCTGACTA+GGG 0.566617 8_3:+16134580 None:intergenic
ATGAAGAGCTGTGTGTAAGA+AGG 0.583925 8_3:-16132417 Msa1279240:CDS
TTATTATTATTATCAGTACT+CGG 0.586593 8_3:+16132148 None:intergenic
GATGCTGTGTCCAAGTTTGG+AGG 0.587154 8_3:-16134489 Msa1279240:CDS
TAAGAGAACTCAAAAGGCTG+AGG 0.589786 8_3:-16132533 Msa1279240:CDS
CCAGAATCCCCTAGTCAGGT+TGG 0.590353 8_3:-16134588 Msa1279240:CDS
CAAAACTGGCTTCATCTGCA+AGG 0.603066 8_3:+16133879 None:intergenic
GCTTCGGGTAAAAGAAGAAG+TGG 0.603179 8_3:-16133939 Msa1279240:CDS
TGCAAATTCACAGATTGAGA+TGG 0.603818 8_3:-16132485 Msa1279240:CDS
GAAGCTGGACCAGCTTCGGA+TGG 0.608617 8_3:-16132121 Msa1279240:CDS
AATGCCGAGAAAGCTGCAGA+AGG 0.611021 8_3:-16132370 Msa1279240:CDS
GCATCTTTGACAGATTTCAA+AGG 0.612629 8_3:+16134507 None:intergenic
AACGGCGCACATGGAAGCCG+AGG 0.615182 8_3:-16133618 Msa1279240:CDS
TTCACAGATTGAGATGGCAA+AGG 0.617923 8_3:-16132479 Msa1279240:CDS
CAGCAGTAGAACAAGAGTTG+AGG 0.621364 8_3:-16132342 Msa1279240:CDS
TTCATCACCAACCTGACTAG+GGG 0.621675 8_3:+16134581 None:intergenic
AGTTTGGAGGAATAGTGGAC+TGG 0.621914 8_3:-16134476 Msa1279240:CDS
TGAAGCCAAAGCACAACTTG+AGG 0.623555 8_3:-16133858 Msa1279240:CDS
TGCAGCTATCATCAATGCTG+AGG 0.635829 8_3:-16133732 Msa1279240:CDS
GAGAGAAGTGAATCAGCTAG+AGG 0.637520 8_3:-16132628 Msa1279240:CDS
AGAAGTGAATCAGCTAGAGG+AGG 0.645824 8_3:-16132625 Msa1279240:CDS
AGCTATCATCAATGCTGAGG+AGG 0.661378 8_3:-16133729 Msa1279240:CDS
CCGTAGAACTCAGAGTCTGG+AGG 0.709746 8_3:-16134448 Msa1279240:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTCATAAAATCTTATAA+TGG - chr8_3:16132186-16132205 Msa1279240:CDS 15.0%
!!! CTAACTTTATTTCTAATAAT+AGG - chr8_3:16133786-16133805 Msa1279240:CDS 15.0%
!! TTATTATTATTATCAGTACT+CGG + chr8_3:16134341-16134360 None:intergenic 15.0%
!! TAAAGCAAGAATATAATTTG+AGG + chr8_3:16132086-16132105 None:intergenic 20.0%
!!! TACATTTTTCTTCTTAGTTT+TGG - chr8_3:16132106-16132125 Msa1279240:CDS 20.0%
!! TTATGAAGTTATATATGACT+AGG + chr8_3:16132176-16132195 None:intergenic 20.0%
!! AAAAAAAGTCATGTAGTTTA+GGG + chr8_3:16132379-16132398 None:intergenic 20.0%
!! AAAAAAAAGTCATGTAGTTT+AGG + chr8_3:16132380-16132399 None:intergenic 20.0%
!! AAAAAGAATTAGACTCTTTA+AGG - chr8_3:16132699-16132718 Msa1279240:intron 20.0%
!!! AACTGATAAAAAAGTGATTT+TGG - chr8_3:16133646-16133665 Msa1279240:CDS 20.0%
!!! AAAGAGTTATTATGTGATTT+TGG - chr8_3:16133713-16133732 Msa1279240:CDS 20.0%
!!! AAAGTGATTTTTTTCACAAA+TGG - chr8_3:16133750-16133769 Msa1279240:CDS 20.0%
!! AATAATAATAATGTTGAAGC+TGG - chr8_3:16134350-16134369 Msa1279240:intron 20.0%
!!! TCTTTCTGTTTTGTTCTTTT+TGG - chr8_3:16132403-16132422 Msa1279240:CDS 25.0%
!!! CTTTCTGTTTTGTTCTTTTT+GGG - chr8_3:16132404-16132423 Msa1279240:CDS 25.0%
!! CTTTTTCTTCACTTTCTTTA+AGG + chr8_3:16133331-16133350 None:intergenic 25.0%
!!! TATGTGATTTTGGAAAGTTT+AGG - chr8_3:16133723-16133742 Msa1279240:CDS 25.0%
!! TGCTAAAGTTTCTGAAAAAT+TGG - chr8_3:16133812-16133831 Msa1279240:CDS 25.0%
! TAAAGATTCAATCAAAGCAT+TGG - chr8_3:16133836-16133855 Msa1279240:CDS 25.0%
!! TAAATTCTTTTGTTGCAAGA+TGG - chr8_3:16134564-16134583 Msa1279240:CDS 25.0%
TTAAGACCAGAATCAGAATT+TGG + chr8_3:16131937-16131956 None:intergenic 30.0%
TTATATATGACTAGGACTAG+GGG + chr8_3:16132168-16132187 None:intergenic 30.0%
GTTATATATGACTAGGACTA+GGG + chr8_3:16132169-16132188 None:intergenic 30.0%
AGTTATATATGACTAGGACT+AGG + chr8_3:16132170-16132189 None:intergenic 30.0%
!! TAAATAGCGGATATATAGCA+TGG - chr8_3:16132220-16132239 Msa1279240:CDS 30.0%
!! TAGTTGTTTCTCATTCTTTG+AGG - chr8_3:16132329-16132348 Msa1279240:CDS 30.0%
! GAGTATGATTTTATAGTGAG+TGG - chr8_3:16132725-16132744 Msa1279240:intron 30.0%
! ATGATTTTATAGTGAGTGGA+AGG - chr8_3:16132729-16132748 Msa1279240:intron 30.0%
! TGATTTTATAGTGAGTGGAA+GGG - chr8_3:16132730-16132749 Msa1279240:intron 30.0%
AAGAGTTCTCAAATCCAAAT+TGG - chr8_3:16132994-16133013 Msa1279240:CDS 30.0%
TTTCAAATCAAGCAACAAAG+AGG + chr8_3:16133029-16133048 None:intergenic 30.0%
AACCAATGAAGAAAGAAAGA+AGG - chr8_3:16133090-16133109 Msa1279240:CDS 30.0%
TTCCTTCTTTCTTTCTTCAT+TGG + chr8_3:16133095-16133114 None:intergenic 30.0%
AGCTTCAATATTGCTTCAAT+CGG - chr8_3:16133274-16133293 Msa1279240:intron 30.0%
GAATGAAGCAAAAGAGATTA+TGG - chr8_3:16133427-16133446 Msa1279240:CDS 30.0%
CAAGCAACACAAAATGAAAT+AGG - chr8_3:16133596-16133615 Msa1279240:CDS 30.0%
AGAACAAAGAAAAGCTAATG+AGG - chr8_3:16134184-16134203 Msa1279240:intron 30.0%
GAAATCATTGTTTCCTTCAA+AGG - chr8_3:16134406-16134425 Msa1279240:intron 30.0%
AAGAATTACATTCACTTGCT+TGG + chr8_3:16134464-16134483 None:intergenic 30.0%
!! AACTAGTCTTATTTCTGATG+AGG - chr8_3:16134500-16134519 Msa1279240:CDS 30.0%
ACTTCACCAAATTCTGATTC+TGG - chr8_3:16131928-16131947 Msa1279240:three_prime_UTR 35.0%
GCATCTTTGACAGATTTCAA+AGG + chr8_3:16131982-16132001 None:intergenic 35.0%
AGCAAGATTGGACATGAATT+TGG - chr8_3:16132437-16132456 Msa1279240:CDS 35.0%
ACCAAATACAGCTGAAGAAT+TGG - chr8_3:16132463-16132482 Msa1279240:CDS 35.0%
TCCAATTCTTCAGCTGTATT+TGG + chr8_3:16132467-16132486 None:intergenic 35.0%
ACTTGTGATTCGCAAAATTG+AGG - chr8_3:16132571-16132590 Msa1279240:CDS 35.0%
AGCTGAGTTAATTGCAACAA+AGG - chr8_3:16132826-16132845 Msa1279240:intron 35.0%
!! GTCATTGATTTCGACTCAAA+CGG - chr8_3:16132850-16132869 Msa1279240:intron 35.0%
TGAACTCGAACAATCAGAAA+AGG - chr8_3:16132937-16132956 Msa1279240:CDS 35.0%
TTCCATATATGCTGCTAACT+CGG + chr8_3:16133053-16133072 None:intergenic 35.0%
AGAAAGAAAGAAGGAACTAG+AGG - chr8_3:16133099-16133118 Msa1279240:CDS 35.0%
AGCAGTTTGAGCTAATGATT+TGG + chr8_3:16133501-16133520 None:intergenic 35.0%
! CAATGTAGCTAAGTTTGCTT+TGG + chr8_3:16133564-16133583 None:intergenic 35.0%
CAAAGCAAACTTAGCTACAT+TGG - chr8_3:16133562-16133581 Msa1279240:CDS 35.0%
GCTAAGTAAGAGAACTCAAA+AGG - chr8_3:16133947-16133966 Msa1279240:CDS 35.0%
TGCAAATTCACAGATTGAGA+TGG - chr8_3:16134001-16134020 Msa1279240:CDS 35.0%
! TAAAGGAGATTTTCCCTTTG+AGG + chr8_3:16134282-16134301 None:intergenic 35.0%
GTAGTAGAGGTAGTATCTAA+AGG + chr8_3:16134299-16134318 None:intergenic 35.0%
AAGAACATGACAACCTTTGA+AGG + chr8_3:16134422-16134441 None:intergenic 35.0%
TTTCATCACCAACCTGACTA+GGG + chr8_3:16131909-16131928 None:intergenic 40.0%
AAAGATGCTGTGTCCAAGTT+TGG - chr8_3:16131994-16132013 Msa1279240:three_prime_UTR 40.0%
! GGACTAGTGTCGTTAAATAG+CGG - chr8_3:16132207-16132226 Msa1279240:CDS 40.0%
! CATATTGTGCTGATGCAAAG+TGG - chr8_3:16132275-16132294 Msa1279240:CDS 40.0%
GTGTAGAAAGAGATGAGCTT+CGG - chr8_3:16132531-16132550 Msa1279240:CDS 40.0%
TGTAGAAAGAGATGAGCTTC+GGG - chr8_3:16132532-16132551 Msa1279240:CDS 40.0%
! TTGTGCTTTGGCTTCAAAAC+TGG + chr8_3:16132624-16132643 None:intergenic 40.0%
! TTCAACCTCAAGTTGTGCTT+TGG + chr8_3:16132636-16132655 None:intergenic 40.0%
AATGCATAGTGCTGCAGTTT+CGG - chr8_3:16132661-16132680 Msa1279240:CDS 40.0%
CTCAGCTGTTAAATCTTCCA+CGG + chr8_3:16132813-16132832 None:intergenic 40.0%
AGAGGAAGATGCTTCCAATT+TGG + chr8_3:16133011-16133030 None:intergenic 40.0%
AACCGAGTTAGCAGCATATA+TGG - chr8_3:16133048-16133067 Msa1279240:CDS 40.0%
TAAGAGAACTCAAAAGGCTG+AGG - chr8_3:16133953-16133972 Msa1279240:CDS 40.0%
TTCACAGATTGAGATGGCAA+AGG - chr8_3:16134007-16134026 Msa1279240:CDS 40.0%
GGAATCTGAATTGAGAAGCT+TGG - chr8_3:16134028-16134047 Msa1279240:CDS 40.0%
ATGAAGAGCTGTGTGTAAGA+AGG - chr8_3:16134069-16134088 Msa1279240:intron 40.0%
TGAAGAGCTGTGTGTAAGAA+GGG - chr8_3:16134070-16134089 Msa1279240:intron 40.0%
! TTTTCCTTCTGCAGCTTTCT+CGG + chr8_3:16134123-16134142 None:intergenic 40.0%
TAGAACAAGAGTTGAGGACA+TGG - chr8_3:16134150-16134169 Msa1279240:intron 40.0%
!! GATTTTCCCTTTGAGGAGTT+CGG + chr8_3:16134275-16134294 None:intergenic 40.0%
! TTTTTCTTTCCATCCGAAGC+TGG + chr8_3:16134377-16134396 None:intergenic 40.0%
TTCATCACCAACCTGACTAG+GGG + chr8_3:16131908-16131927 None:intergenic 45.0%
GTTTCATCACCAACCTGACT+AGG + chr8_3:16131910-16131929 None:intergenic 45.0%
GTCCAAGTTTGGAGGAATAG+TGG - chr8_3:16132005-16132024 Msa1279240:three_prime_UTR 45.0%
GTCCACTATTCCTCCAAACT+TGG + chr8_3:16132010-16132029 None:intergenic 45.0%
!! AGTTTGGAGGAATAGTGGAC+TGG - chr8_3:16132010-16132029 Msa1279240:three_prime_UTR 45.0%
GGTGAACAGAGAAGCAAGAT+TGG - chr8_3:16132425-16132444 Msa1279240:CDS 45.0%
GCTTCGGGTAAAAGAAGAAG+TGG - chr8_3:16132547-16132566 Msa1279240:CDS 45.0%
GATTCGCAAAATTGAGGAGC+TGG - chr8_3:16132577-16132596 Msa1279240:CDS 45.0%
! CAAAACTGGCTTCATCTGCA+AGG + chr8_3:16132610-16132629 None:intergenic 45.0%
TGAAGCCAAAGCACAACTTG+AGG - chr8_3:16132628-16132647 Msa1279240:CDS 45.0%
TAGTGCTGCAGTTTCGGAAT+TGG - chr8_3:16132667-16132686 Msa1279240:CDS 45.0%
TGCAGCTATCATCAATGCTG+AGG - chr8_3:16132754-16132773 Msa1279240:intron 45.0%
AGCTATCATCAATGCTGAGG+AGG - chr8_3:16132757-16132776 Msa1279240:intron 45.0%
!!! CACGGCTTTTTCAATCTCCT+TGG + chr8_3:16132795-16132814 None:intergenic 45.0%
CAAGGAGATTGAAAAAGCCG+TGG - chr8_3:16132793-16132812 Msa1279240:intron 45.0%
! GCTGCTGCTTGAAGTTTCTT+AGG + chr8_3:16133461-16133480 None:intergenic 45.0%
GAGAGAAGTGAATCAGCTAG+AGG - chr8_3:16133858-16133877 Msa1279240:CDS 45.0%
AGAAGTGAATCAGCTAGAGG+AGG - chr8_3:16133861-16133880 Msa1279240:CDS 45.0%
CAGCAGTAGAACAAGAGTTG+AGG - chr8_3:16134144-16134163 Msa1279240:intron 45.0%
TCTTCACCGAACTCCTCAAA+GGG - chr8_3:16134266-16134285 Msa1279240:intron 45.0%
AGTTGCAGTAGTGGTAGTAG+AGG + chr8_3:16134312-16134331 None:intergenic 45.0%
! TGACTAGGGGATTCTGGTTG+TGG + chr8_3:16131895-16131914 None:intergenic 50.0%
ACAACCAGAATCCCCTAGTC+AGG - chr8_3:16131894-16131913 Msa1279240:three_prime_UTR 50.0%
GATGCTGTGTCCAAGTTTGG+AGG - chr8_3:16131997-16132016 Msa1279240:three_prime_UTR 50.0%
AACCCGTAGAACTCAGAGTC+TGG - chr8_3:16132035-16132054 Msa1279240:exon 50.0%
CTCCAGACTCTGAGTTCTAC+GGG + chr8_3:16132040-16132059 None:intergenic 50.0%
CCTCCAGACTCTGAGTTCTA+CGG + chr8_3:16132041-16132060 None:intergenic 50.0%
ATGACTAGGACTAGGGGAAG+TGG + chr8_3:16132162-16132181 None:intergenic 50.0%
AATGCCGAGAAAGCTGCAGA+AGG - chr8_3:16134116-16134135 Msa1279240:intron 50.0%
! GAGGAGTTCGGTGAAGAGTT+TGG + chr8_3:16134263-16134282 None:intergenic 50.0%
CTCTTCACCGAACTCCTCAA+AGG - chr8_3:16134265-16134284 Msa1279240:intron 50.0%
CGGAGTAGTAGTTGCAGTAG+TGG + chr8_3:16134321-16134340 None:intergenic 50.0%
TGTTGAAGCTGGACCAGCTT+CGG - chr8_3:16134361-16134380 Msa1279240:intron 50.0%
CCAACCTGACTAGGGGATTC+TGG + chr8_3:16131901-16131920 None:intergenic 55.0%
CCAGAATCCCCTAGTCAGGT+TGG - chr8_3:16131898-16131917 Msa1279240:three_prime_UTR 55.0%
CCGTAGAACTCAGAGTCTGG+AGG - chr8_3:16132038-16132057 Msa1279240:CDS 55.0%
TTCGACTCAAACGGCGCACA+TGG - chr8_3:16132859-16132878 Msa1279240:intron 55.0%
GAAGCCGAGGAACAAGCATC+AGG - chr8_3:16132881-16132900 Msa1279240:intron 55.0%
GACGCCTGATGCTTGTTCCT+CGG + chr8_3:16132888-16132907 None:intergenic 55.0%
GGAGGCTGTTGCAGCATCCA+AGG - chr8_3:16132775-16132794 Msa1279240:intron 60.0%
GAAGCTGGACCAGCTTCGGA+TGG - chr8_3:16134365-16134384 Msa1279240:intron 60.0%
AACGGCGCACATGGAAGCCG+AGG - chr8_3:16132868-16132887 Msa1279240:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 16131886 16134622 16131886 ID=Msa1279240;Name=Msa1279240
chr8_3 mRNA 16131886 16134622 16131886 ID=Msa1279240-mRNA-1;Parent=Msa1279240;Name=Msa1279240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.25|1|1|1|4|150|618
chr8_3 exon 16131886 16132700 16131886 ID=Msa1279240-mRNA-1:exon:6271;Parent=Msa1279240-mRNA-1
chr8_3 exon 16132921 16133251 16132921 ID=Msa1279240-mRNA-1:exon:6270;Parent=Msa1279240-mRNA-1
chr8_3 exon 16133388 16134074 16133388 ID=Msa1279240-mRNA-1:exon:6269;Parent=Msa1279240-mRNA-1
chr8_3 exon 16134449 16134622 16134449 ID=Msa1279240-mRNA-1:exon:6268;Parent=Msa1279240-mRNA-1
chr8_3 CDS 16134449 16134622 16134449 ID=Msa1279240-mRNA-1:cds;Parent=Msa1279240-mRNA-1
chr8_3 CDS 16133388 16134074 16133388 ID=Msa1279240-mRNA-1:cds;Parent=Msa1279240-mRNA-1
chr8_3 CDS 16132921 16133251 16132921 ID=Msa1279240-mRNA-1:cds;Parent=Msa1279240-mRNA-1
chr8_3 CDS 16132036 16132700 16132036 ID=Msa1279240-mRNA-1:cds;Parent=Msa1279240-mRNA-1
chr8_3 three_prime_UTR 16131886 16132035 16131886 ID=Msa1279240-mRNA-1:three_prime_utr;Parent=Msa1279240-mRNA-1
Gene Sequence

>Msa1279240

ATGGAGCCACAACCAGAATCCCCTAGTCAGGTTGGTGATGAAACTTCACCAAATTCTGATTCTGGTCTTAAGAATGTAATTGATACAGCAGCACCTTTGAAATCTGTCAAAGATGCTGTGTCCAAGTTTGGAGGAATAGTGGACTGGAAAACCCGTAGAACTCAGAGTCTGGAGAGAAGCAAGATTGGACATGAATTTGGAAAACCAAATACAGCTGAAGAATTGGAAAACACTAAGAAACTTACAGAAGAACTCAAACTCAACTTAGAAAGTGTAGAAAGAGATGAGCTTCGGGTAAAAGAAGAAGTGGAACTTGTGATTCGCAAAATTGAGGAGCTGGAGCAAGACCTTGCAGATGAAGCCAGTTTTGAAGCCAAAGCACAACTTGAGGTTGAAAAATCAATGCATAGTGCTGCAGTTTCGGAATTGGAATATTTGAAAAAAGAATTAGACTCTTTAAGGAAAGAGTATGATTTTATAGTGAGTGGAAGGGATGCAGCTATCATCAATGCTGAGGAGGCTGTTGCAGCATCCAAGGAGATTGAAAAAGCCGTGGAAGATTTAACAGCTGAGTTAATTGCAACAAAGGAGTCATTGATTTCGACTCAAACGGCGCACATGGAAGCCGAGGAACAAGCATCAGGCGTCGTTGATGAAGAAACTAAAAAATATAAGCTTGAACTCGAACAATCAGAAAAGGAGCTAGAGACACTAAATGAACAAGTTTTATCAGCAAGAGTTCTCAAATCCAAATTGGAAGCATCTTCCTCTTTGTTGCTTGATTTGAAAACCGAGTTAGCAGCATATATGGAATCAAAACTAGAAGATGAAACCAATGAAGAAAGAAAGAAGGAACTAGAGGTTAACAGCTTAAGAGAAGCTTCAATATTGCTTCAATCGGAACTAAAAGAAGAAAAGTCAATTCTCAACAACCTTAAAGAAAGTGAAGAAAAAGCTTCTGCTAAAGTCACAAGTCTTCAAGTTGAACTTGAGAAATCAAAATCAGCAATAGCTTTTCTTCAAATGAAAGAGAATGAAGCAAAAGAGATTATGGCTGAGTTACCTAAGAAACTTCAAGCAGCAGCACAAGAAGCTGATGAAGCCAAATCATTAGCTCAAACTGCTCAAGCTCAACTTCTTGAAGCACGAGAAGAAGCTGAAAAAGCCAAAGCAAACTTAGCTACATTGGAAAGAGCTGCTAAAGTTTCTGAAAAATTGGCTAAAGATTCAATCAAAGCATTGGAGAGAAGTGAATCAGCTAGAGGAGGAAGCAACAAAAATGAAGTTGATTCTTCATCTCTTGTGACACTCACATTAGATGAATATCATGAGCTAAGTAAGAGAACTCAAAAGGCTGAGGAACAAGCTAATCTAAGAATTGCAGCTGCAAATTCACAGATTGAGATGGCAAAGGAATCTGAATTGAGAAGCTTGGAGAAGTTAGAAGAACTGAATGAAGAGCTGTGTGTAAGAAGGGAATCACTTAAGATTGCAAATGAGAATGCCGAGAAAGCTGCAGAAGGAAAATCAGCAGTAGAACAAGAGTTGAGGACATGGAGAGCTGAACAAGAACAAAGAAAAGCTAATGAGGTTGCTGCTGCTGCTGCTGCTACTGCTGCTGCAACTGTGAATGTAAATGATTCACCAAACTCTTCACCGAACTCCTCAAAGGGAAAATCTCCTTTAGATACTACCTCTACTACCACTACTGCAACTACTACTCCGAGTACTGATAATAATAATAATGTTGAAGCTGGACCAGCTTCGGATGGAAAGAAAAAGAAGAAGAAGAAATCATTGTTTCCTTCAAAGGTTGTCATGTTCTTTGCAAAGAGAAAAACACATCCAAGCAAGTGA

Protein sequence

>Msa1279240

MEPQPESPSQVGDETSPNSDSGLKNVIDTAAPLKSVKDAVSKFGGIVDWKTRRTQSLERSKIGHEFGKPNTAEELENTKKLTEELKLNLESVERDELRVKEEVELVIRKIEELEQDLADEASFEAKAQLEVEKSMHSAAVSELEYLKKELDSLRKEYDFIVSGRDAAIINAEEAVAASKEIEKAVEDLTAELIATKESLISTQTAHMEAEEQASGVVDEETKKYKLELEQSEKELETLNEQVLSARVLKSKLEASSSLLLDLKTELAAYMESKLEDETNEERKKELEVNSLREASILLQSELKEEKSILNNLKESEEKASAKVTSLQVELEKSKSAIAFLQMKENEAKEIMAELPKKLQAAAQEADEAKSLAQTAQAQLLEAREEAEKAKANLATLERAAKVSEKLAKDSIKALERSESARGGSNKNEVDSSSLVTLTLDEYHELSKRTQKAEEQANLRIAAANSQIEMAKESELRSLEKLEELNEELCVRRESLKIANENAEKAAEGKSAVEQELRTWRAEQEQRKANEVAAAAAATAAATVNVNDSPNSSPNSSKGKSPLDTTSTTTTATTTPSTDNNNNVEAGPASDGKKKKKKKSLFPSKVVMFFAKRKTHPSK*