AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0840450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0840450 MtrunA17_Chr5g0409821 99.513 411 2 0 1 411 1 411 0.0 849
Msa0840450 MtrunA17_Chr4g0057631 30.645 124 83 2 137 257 90 213 6.38e-13 70.1
Msa0840450 MtrunA17_Chr7g0225691 28.125 160 112 2 137 293 110 269 7.14e-13 70.1
Msa0840450 MtrunA17_Chr6g0457931 36.667 90 56 1 169 257 5 94 1.69e-12 68.2
Msa0840450 MtrunA17_Chr3g0102981 26.752 157 114 1 137 292 105 261 4.36e-12 67.8
Msa0840450 MtrunA17_Chr5g0447081 26.415 159 114 2 137 292 105 263 2.67e-11 65.1
Msa0840450 MtrunA17_Chr4g0037431 25.907 193 112 6 66 253 90 256 4.31e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0840450 AT1G32060.1 80.779 411 63 5 1 411 1 395 0.0 677
Msa0840450 AT3G27440.1 24.681 235 154 5 64 293 28 244 7.71e-16 79.7
Msa0840450 AT3G27440.2 24.681 235 154 5 64 293 28 244 9.25e-16 79.0
Msa0840450 AT3G27440.3 25.843 178 129 3 119 293 20 197 1.30e-14 75.5
Msa0840450 AT3G27190.1 33.065 124 80 2 137 257 119 242 2.59e-14 75.1
Msa0840450 AT1G55810.2 25.506 247 145 8 18 257 10 224 7.33e-14 73.6
Msa0840450 AT1G55810.7 26.000 200 124 5 64 257 33 214 7.38e-14 73.6
Msa0840450 AT1G55810.5 30.645 124 83 2 137 257 101 224 7.78e-14 73.6
Msa0840450 AT1G55810.4 30.645 124 83 2 137 257 101 224 7.78e-14 73.6
Msa0840450 AT1G55810.3 25.506 247 145 8 18 257 10 224 7.92e-14 73.6
Msa0840450 AT1G55810.1 25.506 247 145 8 18 257 10 224 7.92e-14 73.6
Msa0840450 AT1G55810.6 25.506 247 145 8 18 257 10 224 7.92e-14 73.6
Msa0840450 AT5G40870.1 28.302 159 111 2 137 292 119 277 3.82e-13 71.2
Msa0840450 AT1G26190.1 26.368 201 109 7 66 257 66 236 7.23e-11 64.7
Msa0840450 AT1G26190.6 26.368 201 109 7 66 257 66 236 9.47e-11 64.3

Find 97 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCAATGACCAAGATTT+TGG 0.150126 5_4:-16146555 None:intergenic
AGTATTTAACACCCTCTTTC+TGG 0.157752 5_4:-16148198 None:intergenic
TAATCATGTTACTGGTCTTT+TGG 0.213994 5_4:+16146508 Msa0840450:CDS
AGTAACTTCTCCATAGAATT+TGG 0.224366 5_4:-16150371 None:intergenic
TTTGGATGATTACCATTCTT+TGG 0.234705 5_4:+16146364 Msa0840450:CDS
TTCTCGAGTTAGAGATCTTT+TGG 0.249809 5_4:+16147334 Msa0840450:CDS
CCTATTTATAATCATGTTAC+TGG 0.259857 5_4:+16146500 Msa0840450:CDS
TTGTTCTCTCTTTCTCTCTA+AGG 0.263380 5_4:-16145982 None:intergenic
TCTTATCTTCAAACCAACTA+TGG 0.263816 5_4:-16150455 None:intergenic
GAAATTTGCTTGGAAAATTC+AGG 0.264484 5_4:+16147391 Msa0840450:CDS
GAATCAGGATTTCCACCTTT+TGG 0.277176 5_4:-16146305 None:intergenic
AAGTTGGATAGAGGATTATT+TGG 0.283269 5_4:-16145928 None:intergenic
CCAGTAACATGATTATAAAT+AGG 0.295466 5_4:-16146500 None:intergenic
CCAATATAAGCTTCAAAATC+AGG 0.308836 5_4:-16147585 None:intergenic
TACATATATATACATAATAT+TGG 0.321247 5_4:+16150556 Msa0840450:three_prime_UTR
CTGATAAGTGTGTTTGAATC+AGG 0.321702 5_4:-16146320 None:intergenic
CTATACAACCTCGCACATTT+AGG 0.331962 5_4:+16145762 Msa0840450:five_prime_UTR
CATTATCATCTGGAATTAGT+TGG 0.339527 5_4:-16148147 None:intergenic
CCGTCATCAAACAAGTAAAC+TGG 0.339534 5_4:-16148226 None:intergenic
ATGACGGTTCTACAATTTCA+TGG 0.358447 5_4:+16148242 Msa0840450:CDS
ATTGAGATGTTTGTTCTTAG+AGG 0.359760 5_4:-16146050 None:intergenic
TCATTTCCTTTGTAAGTCTC+TGG 0.363648 5_4:-16148322 None:intergenic
AAGAAGAAGTGAGTTTAAGT+TGG 0.366190 5_4:-16145944 None:intergenic
ATCTTTCCTTCATTATCATC+TGG 0.370333 5_4:-16148157 None:intergenic
ATTGGTCTAGCAGCTGATTC+AGG 0.370444 5_4:+16146221 Msa0840450:CDS
TATTAAACCACCCAAAATCT+TGG 0.372303 5_4:+16146544 Msa0840450:CDS
AGTTGGATAGAGGATTATTT+GGG 0.372468 5_4:-16145927 None:intergenic
ATTATGTATATATATGTATA+AGG 0.379550 5_4:-16150551 None:intergenic
AACCTCTCTTCCAAATTCTA+TGG 0.381744 5_4:+16150361 Msa0840450:CDS
ATATTCATATGCATGGACTA+TGG 0.386337 5_4:-16150798 None:intergenic
TCTTCAAACCAACTATGGTT+TGG 0.386867 5_4:-16150450 None:intergenic
AGTGAGTTTAAGTTGGATAG+AGG 0.388378 5_4:-16145937 None:intergenic
CCCAAAATCTTGGTCATTGA+AGG 0.390954 5_4:+16146554 Msa0840450:CDS
TAAGCTTTAGCTGCTCCTAC+TGG 0.408909 5_4:-16150517 None:intergenic
ATTATCATCTGGAATTAGTT+GGG 0.412929 5_4:-16148146 None:intergenic
TGGAAGAGAGGTTGCTTAAG+TGG 0.427841 5_4:-16150351 None:intergenic
TTTGAACAATTTGTCATCAC+TGG 0.433037 5_4:+16150763 Msa0840450:three_prime_UTR
CACAACCACTGTGATATGTT+TGG 0.440482 5_4:+16146346 Msa0840450:CDS
CCTGTTCCATTGTTGCTACC+AGG 0.444673 5_4:-16150421 None:intergenic
TACCATTCTTTGGATAGAAC+TGG 0.449333 5_4:+16146374 Msa0840450:CDS
ATAGGTGTCAGTTGTGGAAA+TGG 0.452646 5_4:+16150285 Msa0840450:intron
TACCAGTTCTATCCAAAGAA+TGG 0.458109 5_4:-16146376 None:intergenic
GCAATGAGGTGAAATTTGCT+TGG 0.466967 5_4:+16147381 Msa0840450:CDS
TCATCTGGAATTAGTTGGGT+TGG 0.467987 5_4:-16148142 None:intergenic
CAAAACAAAGGGAGTTTAGC+AGG 0.468657 5_4:-16145846 None:intergenic
GGTCTCTTCCAAACCATAGT+TGG 0.473792 5_4:+16150442 Msa0840450:CDS
CCTGGTAGCAACAATGGAAC+AGG 0.476412 5_4:+16150421 Msa0840450:CDS
AGATCAAAATCATTAGCTCT+TGG 0.480983 5_4:-16146428 None:intergenic
TTGAGCAGATAGTAGCAAGC+AGG 0.481692 5_4:+16150485 Msa0840450:CDS
AGTAGGAGCAGCTAAAGCTT+AGG 0.484112 5_4:+16150519 Msa0840450:CDS
TTGGGTGGTTTAATAAGCTC+AGG 0.487228 5_4:-16146536 None:intergenic
ACAATAATATTCAGTGAGAA+TGG 0.495990 5_4:+16146001 Msa0840450:exon
CTAGCAGCTGATTCAGGATG+TGG 0.497361 5_4:+16146227 Msa0840450:CDS
TGTATATATATGTATAAGGC+AGG 0.502674 5_4:-16150547 None:intergenic
TTTGTAAGTCTCTGGTCCAT+AGG 0.514381 5_4:-16148314 None:intergenic
CTCCATAGAATTTGGAAGAG+AGG 0.516431 5_4:-16150363 None:intergenic
TCACCTCATTGCTAATGTCT+AGG 0.520489 5_4:-16147370 None:intergenic
CCATAGGAAAATTTAATGCC+AGG 0.522813 5_4:-16148298 None:intergenic
AAACTTACATGCTCTTATCC+TGG 0.529194 5_4:+16148280 Msa0840450:CDS
GAACTTTAAATCAAAACAAA+GGG 0.529797 5_4:-16145857 None:intergenic
CCAGTTTACTTGTTTGATGA+CGG 0.531064 5_4:+16148226 Msa0840450:CDS
TACTTGATAACATGTGGAGC+AGG 0.532032 5_4:+16146179 Msa0840450:CDS
CTAATTCCAGATGATAATGA+AGG 0.532317 5_4:+16148151 Msa0840450:CDS
GACTCACAGACAATTGTGAT+TGG 0.537034 5_4:+16146203 Msa0840450:CDS
CTGTTCCATTGTTGCTACCA+GGG 0.541192 5_4:-16150420 None:intergenic
ATGTTGTATTAATAATATAG+AGG 0.542686 5_4:+16150698 Msa0840450:three_prime_UTR
GGTGCAGCAGAGCCACCAAA+AGG 0.546897 5_4:+16146290 Msa0840450:CDS
TGGAACACATAAAATATATG+AGG 0.549816 5_4:-16145882 None:intergenic
GATTTCCCTGGTAGCAACAA+TGG 0.550594 5_4:+16150415 Msa0840450:CDS
AGTGAGGTTGATCCAGAAAG+AGG 0.553461 5_4:+16148186 Msa0840450:CDS
ACAAGTTAAAGCTATTAAAG+AGG 0.558513 5_4:+16146460 Msa0840450:CDS
AACATACAATACATGAAATG+TGG 0.565555 5_4:-16150632 None:intergenic
AGAACTGGTAGAAAAGAGAA+AGG 0.567928 5_4:+16146389 Msa0840450:CDS
GGAACTTTAAATCAAAACAA+AGG 0.576138 5_4:-16145858 None:intergenic
CAAGTTAAAGCTATTAAAGA+GGG 0.576481 5_4:+16146461 Msa0840450:CDS
CGTCATCAAACAAGTAAACT+GGG 0.577268 5_4:-16148225 None:intergenic
TGAGCAGATAGTAGCAAGCA+GGG 0.579633 5_4:+16150486 Msa0840450:CDS
TTGAAGCATGCTGATTTCCC+TGG 0.586959 5_4:+16150403 Msa0840450:CDS
GCAGCAGAGCCACCAAAAGG+TGG 0.593621 5_4:+16146293 Msa0840450:CDS
CATGTAAGTTTCCTTCCACA+TGG 0.594474 5_4:-16148268 None:intergenic
TTTCATGGATACCATGTGGA+AGG 0.599237 5_4:+16148257 Msa0840450:CDS
GTGAGGTTGATCCAGAAAGA+GGG 0.602515 5_4:+16148187 Msa0840450:CDS
AACACATAAAATATATGAGG+TGG 0.602665 5_4:-16145879 None:intergenic
GGTGGTTTAATAAGCTCAGG+AGG 0.603286 5_4:-16146533 None:intergenic
GTGTCAGTTGTGGAAATGGA+TGG 0.614489 5_4:+16150289 Msa0840450:CDS
TCAAAGCTAGCATTGAAGCA+AGG 0.615692 5_4:+16147559 Msa0840450:CDS
AGAGACTTACAAAGGAAATG+AGG 0.618923 5_4:+16148324 Msa0840450:CDS
AGAAGATACTTGATAACATG+TGG 0.629598 5_4:+16146173 Msa0840450:CDS
GCAAATATTTCAGAGAGACA+TGG 0.644792 5_4:+16147509 Msa0840450:intron
CAGAGAGACATGGCAGAACG+TGG 0.647655 5_4:+16147519 Msa0840450:intron
TGTGCAATAGGTGTCAGTTG+TGG 0.657015 5_4:+16150279 Msa0840450:intron
AGCAGGGCTGAGACTCCAGT+AGG 0.659219 5_4:+16150502 Msa0840450:CDS
CTACCTAGACATTAGCAATG+AGG 0.661511 5_4:+16147367 Msa0840450:CDS
ACAATTTCATGGATACCATG+TGG 0.667312 5_4:+16148253 Msa0840450:CDS
TATATACATAATATTGGACA+AGG 0.678935 5_4:+16150562 Msa0840450:three_prime_UTR
TATGGACCAGAGACTTACAA+AGG 0.682242 5_4:+16148316 Msa0840450:CDS
ATCATCCAAACATATCACAG+TGG 0.763501 5_4:-16146351 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTAAAAAAAAAATTTT+CGG - chr5_4:16149467-16149486 None:intergenic 0.0%
!! TATAATATATTACTTACATT+GGG - chr5_4:16146586-16146605 None:intergenic 10.0%
!!! AACATTAGAATATTTTTATA+TGG - chr5_4:16146777-16146796 None:intergenic 10.0%
!!! TTTTATTTTTTACATACATA+AGG + chr5_4:16146989-16147008 Msa0840450:intron 10.0%
!! AAAATAATCTTAAAAAACTA+TGG + chr5_4:16147638-16147657 Msa0840450:intron 10.0%
!! CAAAATAATATTAAAATCAA+GGG - chr5_4:16148936-16148955 None:intergenic 10.0%
!!! ATTTTTTTTATATAAAACCA+TGG - chr5_4:16149287-16149306 None:intergenic 10.0%
!! ATTATGTATATATATGTATA+AGG - chr5_4:16150554-16150573 None:intergenic 10.0%
!! TACATATATATACATAATAT+TGG + chr5_4:16150556-16150575 Msa0840450:three_prime_UTR 10.0%
!!! AAAAATAAGAAAATGATTTT+GGG - chr5_4:16150605-16150624 None:intergenic 10.0%
!!! ATATATTCTAAGAAAAAGTT+TGG - chr5_4:16145905-16145924 None:intergenic 15.0%
!! GTATAATATATTACTTACAT+TGG - chr5_4:16146587-16146606 None:intergenic 15.0%
!!! TTGAATTTTATCTAGTAATA+TGG - chr5_4:16146614-16146633 None:intergenic 15.0%
!! ACAATCATATAAAATAGATA+AGG - chr5_4:16147106-16147125 None:intergenic 15.0%
!!! TTTAAGATTATTTTTCTTTC+AGG - chr5_4:16147632-16147651 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr5_4:16148862-16148881 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr5_4:16148861-16148880 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr5_4:16148770-16148789 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr5_4:16148670-16148689 Msa0840450:intron 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + chr5_4:16148705-16148724 Msa0840450:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr5_4:16148861-16148880 Msa0840450:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr5_4:16148862-16148881 Msa0840450:intron 15.0%
!! CCAAAATAATATTAAAATCA+AGG - chr5_4:16148937-16148956 None:intergenic 15.0%
!!! CCTTGATTTTAATATTATTT+TGG + chr5_4:16148934-16148953 Msa0840450:intron 15.0%
!!! TTAATTTCCATTTTTCATTT+TGG + chr5_4:16148982-16149001 Msa0840450:intron 15.0%
!!! AATTAATAAAAAGTACCTTT+TGG + chr5_4:16149011-16149030 Msa0840450:intron 15.0%
!! TTAAAAATTAATGAAGTCTA+TGG - chr5_4:16149129-16149148 None:intergenic 15.0%
!!! TTAATTTCAAGTTTTCATTT+TGG - chr5_4:16149351-16149370 None:intergenic 15.0%
!! TGAAAACTTGAAATTAATTA+AGG + chr5_4:16149354-16149373 Msa0840450:intron 15.0%
!! GAAAACTTGAAATTAATTAA+GGG + chr5_4:16149355-16149374 Msa0840450:intron 15.0%
!!! AAGTGAAAACAAAATTATTT+TGG - chr5_4:16150186-16150205 None:intergenic 15.0%
!!! CAAAAATAAGAAAATGATTT+TGG - chr5_4:16150606-16150625 None:intergenic 15.0%
!! ATGTTGTATTAATAATATAG+AGG + chr5_4:16150698-16150717 Msa0840450:three_prime_UTR 15.0%
!! AAAAAAAATATTCATATGCA+TGG - chr5_4:16150808-16150827 None:intergenic 15.0%
!!! GTAAACAACAATTTTGATTT+TGG - chr5_4:16145790-16145809 None:intergenic 20.0%
!! GAACTTTAAATCAAAACAAA+GGG - chr5_4:16145860-16145879 None:intergenic 20.0%
!! ATAAAATTCAAAATTAGCCA+CGG + chr5_4:16146623-16146642 Msa0840450:intron 20.0%
!! TTCTTATTGATCAAAAACAA+TGG - chr5_4:16146908-16146927 None:intergenic 20.0%
!!! ATCTATTTTATATGATTGTG+TGG + chr5_4:16147107-16147126 Msa0840450:intron 20.0%
!!! ATTTTACTATAGAGTAACAA+TGG - chr5_4:16147202-16147221 None:intergenic 20.0%
!! AAAATAGATAGTTCAATTCA+TGG + chr5_4:16147217-16147236 Msa0840450:intron 20.0%
!! AAATAGATAGTTCAATTCAT+GGG + chr5_4:16147218-16147237 Msa0840450:intron 20.0%
!!! GCATAAAATCTTTTTAACTT+GGG + chr5_4:16147240-16147259 Msa0840450:intron 20.0%
!! ATATTTGCCAAATAATTGTT+AGG - chr5_4:16147497-16147516 None:intergenic 20.0%
!!! ACGTTTTAGATAAAAATTGT+CGG - chr5_4:16147915-16147934 None:intergenic 20.0%
!!! CTATCAACTATTTGATTTTA+GGG + chr5_4:16148374-16148393 Msa0840450:intron 20.0%
!! AAACAAATTTGAATTGAGTA+AGG + chr5_4:16148800-16148819 Msa0840450:intron 20.0%
!! GAAAAATGGAAATTAATTGA+GGG - chr5_4:16148978-16148997 None:intergenic 20.0%
!! TGAAAAATGGAAATTAATTG+AGG - chr5_4:16148979-16148998 None:intergenic 20.0%
!!! AGGTACTTTTTATTAATTGT+GGG - chr5_4:16149009-16149028 None:intergenic 20.0%
!!! AAGGTACTTTTTATTAATTG+TGG - chr5_4:16149010-16149029 None:intergenic 20.0%
!! TTTATTTAATCCTAATCCAA+TGG - chr5_4:16149260-16149279 None:intergenic 20.0%
!!! TTGGATTAGGATTAAATAAA+TGG + chr5_4:16149260-16149279 Msa0840450:intron 20.0%
!!! TAAAAATACAAAGGTACTAT+TGG + chr5_4:16149311-16149330 Msa0840450:intron 20.0%
!! ATTTGTGGTAAGAAAATAAT+AGG - chr5_4:16149399-16149418 None:intergenic 20.0%
!!! GTTAAGCCTTTTTTTTTTTT+TGG - chr5_4:16149693-16149712 None:intergenic 20.0%
!!! GACACAATAGTTAAATATTT+TGG - chr5_4:16150211-16150230 None:intergenic 20.0%
!!! TTTTTTAAACTTTGTGCAAT+AGG + chr5_4:16150267-16150286 Msa0840450:intron 20.0%
!! TATATACATAATATTGGACA+AGG + chr5_4:16150562-16150581 Msa0840450:three_prime_UTR 20.0%
! GGAACTTTAAATCAAAACAA+AGG - chr5_4:16145861-16145880 None:intergenic 25.0%
! AACACATAAAATATATGAGG+TGG - chr5_4:16145882-16145901 None:intergenic 25.0%
! TGGAACACATAAAATATATG+AGG - chr5_4:16145885-16145904 None:intergenic 25.0%
! ACAATAATATTCAGTGAGAA+TGG + chr5_4:16146001-16146020 Msa0840450:exon 25.0%
!!! TGTTGGTTTTAATCAAAAAC+AGG + chr5_4:16146094-16146113 Msa0840450:CDS 25.0%
! ACAAGTTAAAGCTATTAAAG+AGG + chr5_4:16146460-16146479 Msa0840450:CDS 25.0%
! CAAGTTAAAGCTATTAAAGA+GGG + chr5_4:16146461-16146480 Msa0840450:CDS 25.0%
! CCAGTAACATGATTATAAAT+AGG - chr5_4:16146503-16146522 None:intergenic 25.0%
! CCTATTTATAATCATGTTAC+TGG + chr5_4:16146500-16146519 Msa0840450:CDS 25.0%
! AAATTTAGTAACGAGATTAG+AGG - chr5_4:16146678-16146697 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr5_4:16146920-16146939 Msa0840450:intron 25.0%
!!! GGCATAAAATCTTTTTAACT+TGG + chr5_4:16147239-16147258 Msa0840450:intron 25.0%
! AAATTAATAATCAAGGTGAG+TGG - chr5_4:16147286-16147305 None:intergenic 25.0%
! ACGTCTCAAATTAATAATCA+AGG - chr5_4:16147293-16147312 None:intergenic 25.0%
! CAAAAACATGTGCAATTATA+AGG + chr5_4:16147441-16147460 Msa0840450:intron 25.0%
!!! ATTTTGGCCTAACAATTATT+TGG + chr5_4:16147487-16147506 Msa0840450:intron 25.0%
!!! ATTATTTTTCTTTCAGGAGT+TGG - chr5_4:16147626-16147645 None:intergenic 25.0%
! TAAAAAACTATGGTCATGTT+TGG + chr5_4:16147648-16147667 Msa0840450:intron 25.0%
! TACTTGTACAACTTATTCAT+TGG + chr5_4:16148038-16148057 Msa0840450:intron 25.0%
!! ATTATCATCTGGAATTAGTT+GGG - chr5_4:16148149-16148168 None:intergenic 25.0%
!!! TAGTTGATAGGATATTTGAA+GGG - chr5_4:16148364-16148383 None:intergenic 25.0%
!!! ATAGTTGATAGGATATTTGA+AGG - chr5_4:16148365-16148384 None:intergenic 25.0%
! CCTAAAATCAAATAGTTGAT+AGG - chr5_4:16148376-16148395 None:intergenic 25.0%
!!! CCTATCAACTATTTGATTTT+AGG + chr5_4:16148373-16148392 Msa0840450:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr5_4:16148510-16148529 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr5_4:16148511-16148530 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr5_4:16148833-16148852 Msa0840450:intron 25.0%
! TTAACAGCGAAAGATTTATT+TGG - chr5_4:16149060-16149079 None:intergenic 25.0%
! ACTACCATTGGATTAAAAAA+AGG + chr5_4:16149231-16149250 Msa0840450:intron 25.0%
!!! GTAACCTTTTTTTAATCCAA+TGG - chr5_4:16149238-16149257 None:intergenic 25.0%
! GATTAAAAAAAGGTTACCAT+TGG + chr5_4:16149241-16149260 Msa0840450:intron 25.0%
! GTACTATTGGAATTAATTGT+GGG + chr5_4:16149324-16149343 Msa0840450:intron 25.0%
! GAAATTAATTAAGGGACTAT+TGG + chr5_4:16149363-16149382 Msa0840450:intron 25.0%
! ACAATGCATAAAAATATGCA+AGG + chr5_4:16149643-16149662 Msa0840450:intron 25.0%
! CATAAAAATATGCAAGGTTT+GGG + chr5_4:16149649-16149668 Msa0840450:intron 25.0%
! ATAAAAATATGCAAGGTTTG+GGG + chr5_4:16149650-16149669 Msa0840450:intron 25.0%
!!! AAGCCTTTTTTTTTTTTTGG+TGG - chr5_4:16149690-16149709 None:intergenic 25.0%
!!! AGTATTTTAATTCTATCCGA+AGG - chr5_4:16149739-16149758 None:intergenic 25.0%
! TCGATGATTAATCTATGATA+GGG - chr5_4:16149893-16149912 None:intergenic 25.0%
! ATCGATGATTAATCTATGAT+AGG - chr5_4:16149894-16149913 None:intergenic 25.0%
! AATAACACAATTACCAAGTA+GGG + chr5_4:16149937-16149956 Msa0840450:intron 25.0%
! CTTCTTAACAAATGTTCTAA+AGG + chr5_4:16150144-16150163 Msa0840450:intron 25.0%
! TGTATATATATGTATAAGGC+AGG - chr5_4:16150550-16150569 None:intergenic 25.0%
! AACATACAATACATGAAATG+TGG - chr5_4:16150635-16150654 None:intergenic 25.0%
AGTTGGATAGAGGATTATTT+GGG - chr5_4:16145930-16145949 None:intergenic 30.0%
AAGTTGGATAGAGGATTATT+TGG - chr5_4:16145931-16145950 None:intergenic 30.0%
AAGAAGAAGTGAGTTTAAGT+TGG - chr5_4:16145947-16145966 None:intergenic 30.0%
ATTGAGATGTTTGTTCTTAG+AGG - chr5_4:16146053-16146072 None:intergenic 30.0%
!!! ACATGTGTTTTTGATGATGT+TGG - chr5_4:16146077-16146096 None:intergenic 30.0%
ACATCATCAAAAACACATGT+TGG + chr5_4:16146077-16146096 Msa0840450:CDS 30.0%
! AGAAGATACTTGATAACATG+TGG + chr5_4:16146173-16146192 Msa0840450:CDS 30.0%
TTTGGATGATTACCATTCTT+TGG + chr5_4:16146364-16146383 Msa0840450:CDS 30.0%
! AGATCAAAATCATTAGCTCT+TGG - chr5_4:16146431-16146450 None:intergenic 30.0%
!!! TAATCATGTTACTGGTCTTT+TGG + chr5_4:16146508-16146527 Msa0840450:CDS 30.0%
TATTAAACCACCCAAAATCT+TGG + chr5_4:16146544-16146563 Msa0840450:CDS 30.0%
AAAATTAGCCACGGAAATTT+AGG + chr5_4:16146632-16146651 Msa0840450:intron 30.0%
AAATTAGCCACGGAAATTTA+GGG + chr5_4:16146633-16146652 Msa0840450:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr5_4:16146823-16146842 Msa0840450:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr5_4:16146895-16146914 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr5_4:16146946-16146965 Msa0840450:intron 30.0%
AATCTTGAGAATCAAGATGT+GGG + chr5_4:16147035-16147054 Msa0840450:intron 30.0%
TTTATATGATTGTGTGGACA+AGG + chr5_4:16147113-16147132 Msa0840450:intron 30.0%
TCAATCTTCCTTAATGTATG+TGG + chr5_4:16147153-16147172 Msa0840450:intron 30.0%
TTGTTTGTCCACATACATTA+AGG - chr5_4:16147164-16147183 None:intergenic 30.0%
! GAAATTTGCTTGGAAAATTC+AGG + chr5_4:16147391-16147410 Msa0840450:CDS 30.0%
! TTTGTGCTTCTCATTCATTT+TGG + chr5_4:16147471-16147490 Msa0840450:intron 30.0%
CCAATATAAGCTTCAAAATC+AGG - chr5_4:16147588-16147607 None:intergenic 30.0%
!!! CCTGATTTTGAAGCTTATAT+TGG + chr5_4:16147585-16147604 Msa0840450:CDS 30.0%
! CTACTATCAGTAAACTCTTT+TGG - chr5_4:16147807-16147826 None:intergenic 30.0%
! CATTATCATCTGGAATTAGT+TGG - chr5_4:16148150-16148169 None:intergenic 30.0%
! CTAATTCCAGATGATAATGA+AGG + chr5_4:16148151-16148170 Msa0840450:CDS 30.0%
ATCTTTCCTTCATTATCATC+TGG - chr5_4:16148160-16148179 None:intergenic 30.0%
!! AAGGAAAGATTTTAAGAGTG+AGG + chr5_4:16148170-16148189 Msa0840450:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr5_4:16148893-16148912 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr5_4:16148892-16148911 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr5_4:16148573-16148592 Msa0840450:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr5_4:16148832-16148851 Msa0840450:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr5_4:16148892-16148911 Msa0840450:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr5_4:16148893-16148912 Msa0840450:intron 30.0%
!!! TTTTGGCTTAATAGATCCAT+TGG + chr5_4:16148951-16148970 Msa0840450:intron 30.0%
CGAAAGATTTATTTGGCAAA+CGG - chr5_4:16149053-16149072 None:intergenic 30.0%
AAAGCTACCATTAGATTGAA+TGG + chr5_4:16149177-16149196 Msa0840450:intron 30.0%
AAAAAGGTTACCATTGGATT+AGG + chr5_4:16149247-16149266 Msa0840450:intron 30.0%
AGGATTAAATAAATGGACCA+TGG + chr5_4:16149267-16149286 Msa0840450:intron 30.0%
GGTACTATTGGAATTAATTG+TGG + chr5_4:16149323-16149342 Msa0840450:intron 30.0%
! AACAAACTAGCTTGAATTTG+TGG - chr5_4:16149414-16149433 None:intergenic 30.0%
CACAATTCATTCAAGTATTC+AGG - chr5_4:16149507-16149526 None:intergenic 30.0%
TTATTGCAAAGAGTTGAAGT+TGG + chr5_4:16149527-16149546 Msa0840450:intron 30.0%
TGCGACACATTTAACAAATA+GGG - chr5_4:16149572-16149591 None:intergenic 30.0%
ATGCGACACATTTAACAAAT+AGG - chr5_4:16149573-16149592 None:intergenic 30.0%
TAAATGTGTCGCATTGTTAA+AGG + chr5_4:16149579-16149598 Msa0840450:intron 30.0%
GCATAAAAATATGCAAGGTT+TGG + chr5_4:16149648-16149667 Msa0840450:intron 30.0%
!!! CCTTTTTTTTTTTTTGGTGG+TGG - chr5_4:16149687-16149706 None:intergenic 30.0%
CCACCACCAAAAAAAAAAAA+AGG + chr5_4:16149684-16149703 Msa0840450:intron 30.0%
! CTACTTGGTAATTGTGTTAT+TGG - chr5_4:16149938-16149957 None:intergenic 30.0%
CAATAACACAATTACCAAGT+AGG + chr5_4:16149936-16149955 Msa0840450:intron 30.0%
AAAAGTTATGCTAACAAGTG+CGG + chr5_4:16150005-16150024 Msa0840450:intron 30.0%
AGTAACTTCTCCATAGAATT+TGG - chr5_4:16150374-16150393 None:intergenic 30.0%
TCTTATCTTCAAACCAACTA+TGG - chr5_4:16150458-16150477 None:intergenic 30.0%
TAATATAGAGGAGAAAAAGC+AGG + chr5_4:16150710-16150729 Msa0840450:three_prime_UTR 30.0%
TTTGAACAATTTGTCATCAC+TGG + chr5_4:16150763-16150782 Msa0840450:three_prime_UTR 30.0%
! ATATTCATATGCATGGACTA+TGG - chr5_4:16150801-16150820 None:intergenic 30.0%
!! AGTGAGTTTAAGTTGGATAG+AGG - chr5_4:16145940-16145959 None:intergenic 35.0%
TTGTTCTCTCTTTCTCTCTA+AGG - chr5_4:16145985-16146004 None:intergenic 35.0%
! TCTTCTGTTGTTGCTCTTTT+TGG - chr5_4:16146138-16146157 None:intergenic 35.0%
! AGAAGACTCACAAGTGTTTT+TGG + chr5_4:16146266-16146285 Msa0840450:CDS 35.0%
CTGATAAGTGTGTTTGAATC+AGG - chr5_4:16146323-16146342 None:intergenic 35.0%
ATCATCCAAACATATCACAG+TGG - chr5_4:16146354-16146373 None:intergenic 35.0%
TACCATTCTTTGGATAGAAC+TGG + chr5_4:16146374-16146393 Msa0840450:CDS 35.0%
TACCAGTTCTATCCAAAGAA+TGG - chr5_4:16146379-16146398 None:intergenic 35.0%
AGAACTGGTAGAAAAGAGAA+AGG + chr5_4:16146389-16146408 Msa0840450:CDS 35.0%
! CCTTCAATGACCAAGATTTT+GGG - chr5_4:16146557-16146576 None:intergenic 35.0%
! ACCTTCAATGACCAAGATTT+TGG - chr5_4:16146558-16146577 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr5_4:16146828-16146847 None:intergenic 35.0%
GAATCTTGAGAATCAAGATG+TGG + chr5_4:16147034-16147053 Msa0840450:intron 35.0%
ATCTTGAGAATCAAGATGTG+GGG + chr5_4:16147036-16147055 Msa0840450:intron 35.0%
! TTCTCGAGTTAGAGATCTTT+TGG + chr5_4:16147334-16147353 Msa0840450:CDS 35.0%
GCAAATATTTCAGAGAGACA+TGG + chr5_4:16147509-16147528 Msa0840450:intron 35.0%
! CAGTAAACTCTTTTGGATAG+CGG - chr5_4:16147800-16147819 None:intergenic 35.0%
TCGTCTTTGACAATTTACGA+TGG + chr5_4:16147853-16147872 Msa0840450:intron 35.0%
CGTCTTTGACAATTTACGAT+GGG + chr5_4:16147854-16147873 Msa0840450:intron 35.0%
GTATTGCTGCATATAGATAC+CGG - chr5_4:16148021-16148040 None:intergenic 35.0%
AGTATTTAACACCCTCTTTC+TGG - chr5_4:16148201-16148220 None:intergenic 35.0%
CGTCATCAAACAAGTAAACT+GGG - chr5_4:16148228-16148247 None:intergenic 35.0%
CCAGTTTACTTGTTTGATGA+CGG + chr5_4:16148226-16148245 Msa0840450:CDS 35.0%
ATGACGGTTCTACAATTTCA+TGG + chr5_4:16148242-16148261 Msa0840450:CDS 35.0%
ACAATTTCATGGATACCATG+TGG + chr5_4:16148253-16148272 Msa0840450:CDS 35.0%
AAACTTACATGCTCTTATCC+TGG + chr5_4:16148280-16148299 Msa0840450:CDS 35.0%
CCATAGGAAAATTTAATGCC+AGG - chr5_4:16148301-16148320 None:intergenic 35.0%
! CCTGGCATTAAATTTTCCTA+TGG + chr5_4:16148298-16148317 Msa0840450:CDS 35.0%
TCATTTCCTTTGTAAGTCTC+TGG - chr5_4:16148325-16148344 None:intergenic 35.0%
AGAGACTTACAAAGGAAATG+AGG + chr5_4:16148324-16148343 Msa0840450:CDS 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr5_4:16148877-16148896 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr5_4:16148877-16148896 Msa0840450:intron 35.0%
GAAATTAATTGAGGGACCAA+TGG - chr5_4:16148970-16148989 None:intergenic 35.0%
TGTGGGACCAAAATGAAAAA+TGG - chr5_4:16148992-16149011 None:intergenic 35.0%
AAGATTTATTTGGCAAACGG+AGG - chr5_4:16149050-16149069 None:intergenic 35.0%
AGTTTAACCACAAATGCCTA+TGG + chr5_4:16149079-16149098 Msa0840450:intron 35.0%
TCTATGGTAAACCACTCTTA+AGG - chr5_4:16149113-16149132 None:intergenic 35.0%
TCATGGTCCATTCAATCTAA+TGG - chr5_4:16149187-16149206 None:intergenic 35.0%
GGCTCATTGTAAGATAATCA+TGG - chr5_4:16149204-16149223 None:intergenic 35.0%
AATCCAATGGTAGTTGTTGT+TGG - chr5_4:16149225-16149244 None:intergenic 35.0%
!!! TTTTTTTTTTTGGTGGTGGC+CGG - chr5_4:16149683-16149702 None:intergenic 35.0%
TGTATTAACCGACATCACAT+TGG + chr5_4:16149762-16149781 Msa0840450:intron 35.0%
GAATCTCTTAAGCAATGTCT+CGG + chr5_4:16149804-16149823 Msa0840450:intron 35.0%
AATCTCTTAAGCAATGTCTC+GGG + chr5_4:16149805-16149824 Msa0840450:intron 35.0%
TTAATCTATGATAGGGAACG+TGG - chr5_4:16149886-16149905 None:intergenic 35.0%
TTTAAACAAGTAGCCCTACT+TGG - chr5_4:16149953-16149972 None:intergenic 35.0%
AACCTCTCTTCCAAATTCTA+TGG + chr5_4:16150361-16150380 Msa0840450:CDS 35.0%
TCTTCAAACCAACTATGGTT+TGG - chr5_4:16150453-16150472 None:intergenic 35.0%
CTATACAACCTCGCACATTT+AGG + chr5_4:16145762-16145781 Msa0840450:five_prime_UTR 40.0%
!!! TTTTGGTTCCTAAATGTGCG+AGG - chr5_4:16145773-16145792 None:intergenic 40.0%
CAAAACAAAGGGAGTTTAGC+AGG - chr5_4:16145849-16145868 None:intergenic 40.0%
! TACTTGATAACATGTGGAGC+AGG + chr5_4:16146179-16146198 Msa0840450:CDS 40.0%
GACTCACAGACAATTGTGAT+TGG + chr5_4:16146203-16146222 Msa0840450:CDS 40.0%
!!! AGACTCACAAGTGTTTTTGG+AGG + chr5_4:16146269-16146288 Msa0840450:CDS 40.0%
! GAATCAGGATTTCCACCTTT+TGG - chr5_4:16146308-16146327 None:intergenic 40.0%
CACAACCACTGTGATATGTT+TGG + chr5_4:16146346-16146365 Msa0840450:CDS 40.0%
TTGGGTGGTTTAATAAGCTC+AGG - chr5_4:16146539-16146558 None:intergenic 40.0%
! TCAATGACCAAGATTTTGGG+TGG - chr5_4:16146554-16146573 None:intergenic 40.0%
CCCAAAATCTTGGTCATTGA+AGG + chr5_4:16146554-16146573 Msa0840450:CDS 40.0%
GACAAACAACATGCATACGT+GGG + chr5_4:16147175-16147194 Msa0840450:intron 40.0%
GAGAATCATACCTACATGCA+TGG - chr5_4:16147319-16147338 None:intergenic 40.0%
CTACCTAGACATTAGCAATG+AGG + chr5_4:16147367-16147386 Msa0840450:CDS 40.0%
TCACCTCATTGCTAATGTCT+AGG - chr5_4:16147373-16147392 None:intergenic 40.0%
! GCAATGAGGTGAAATTTGCT+TGG + chr5_4:16147381-16147400 Msa0840450:CDS 40.0%
! TCAAAGCTAGCATTGAAGCA+AGG + chr5_4:16147559-16147578 Msa0840450:CDS 40.0%
ACGTGTCTCAAAGACGTATT+TGG + chr5_4:16147931-16147950 Msa0840450:intron 40.0%
CTCTGTATCATTGTTGTGTC+CGG + chr5_4:16147999-16148018 Msa0840450:intron 40.0%
!! GCATCTGCATATTGCTTTTG+TGG - chr5_4:16148106-16148125 None:intergenic 40.0%
! TCATCTGGAATTAGTTGGGT+TGG - chr5_4:16148145-16148164 None:intergenic 40.0%
CCGTCATCAAACAAGTAAAC+TGG - chr5_4:16148229-16148248 None:intergenic 40.0%
TTTCATGGATACCATGTGGA+AGG + chr5_4:16148257-16148276 Msa0840450:CDS 40.0%
CATGTAAGTTTCCTTCCACA+TGG - chr5_4:16148271-16148290 None:intergenic 40.0%
TTTGTAAGTCTCTGGTCCAT+AGG - chr5_4:16148317-16148336 None:intergenic 40.0%
TATGGACCAGAGACTTACAA+AGG + chr5_4:16148316-16148335 Msa0840450:CDS 40.0%
GGAAAATCTAAGGGACCAAA+AGG - chr5_4:16149029-16149048 None:intergenic 40.0%
GCAAACGGAGGAAAATCTAA+GGG - chr5_4:16149038-16149057 None:intergenic 40.0%
TTAACCACAAATGCCTATGG+TGG + chr5_4:16149082-16149101 Msa0840450:intron 40.0%
TGGTAAACCACTCTTAAGGT+TGG - chr5_4:16149109-16149128 None:intergenic 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG - chr5_4:16149682-16149701 None:intergenic 40.0%
! CCAAGTTGAGCTATTTCCTT+CGG + chr5_4:16149720-16149739 Msa0840450:intron 40.0%
GATTCGTGTCCAATTCCATT+CGG - chr5_4:16149789-16149808 None:intergenic 40.0%
! TCACATTTTCCCCATCTACA+TGG - chr5_4:16149837-16149856 None:intergenic 40.0%
ATAGGTGTCAGTTGTGGAAA+TGG + chr5_4:16150285-16150304 Msa0840450:intron 40.0%
CTCCATAGAATTTGGAAGAG+AGG - chr5_4:16150366-16150385 None:intergenic 40.0%
! ATTGGTCTAGCAGCTGATTC+AGG + chr5_4:16146221-16146240 Msa0840450:CDS 45.0%
! TCAGGATTTCCACCTTTTGG+TGG - chr5_4:16146305-16146324 None:intergenic 45.0%
GGTGGTTTAATAAGCTCAGG+AGG - chr5_4:16146536-16146555 None:intergenic 45.0%
TAGCCACGGAAATTTAGGGA+CGG + chr5_4:16146637-16146656 Msa0840450:intron 45.0%
GGACAAACAACATGCATACG+TGG + chr5_4:16147174-16147193 Msa0840450:intron 45.0%
! GAGACGTTTTCCATGCATGT+AGG + chr5_4:16147306-16147325 Msa0840450:intron 45.0%
! AGTGAGGTTGATCCAGAAAG+AGG + chr5_4:16148186-16148205 Msa0840450:CDS 45.0%
! GTGAGGTTGATCCAGAAAGA+GGG + chr5_4:16148187-16148206 Msa0840450:CDS 45.0%
GGCAAACGGAGGAAAATCTA+AGG - chr5_4:16149039-16149058 None:intergenic 45.0%
! TCTTAAGGTTGGTCCACCAT+AGG - chr5_4:16149098-16149117 None:intergenic 45.0%
GAGCCAACAACAACTACCAT+TGG + chr5_4:16149219-16149238 Msa0840450:intron 45.0%
! TGAGCTTGACTCAGTTGGTA+TGG + chr5_4:16149620-16149639 Msa0840450:intron 45.0%
CCGAAGGAAATAGCTCAACT+TGG - chr5_4:16149723-16149742 None:intergenic 45.0%
CATTCGGACCAATGTGATGT+CGG - chr5_4:16149773-16149792 None:intergenic 45.0%
CACATTGGTCCGAATGGAAT+TGG + chr5_4:16149777-16149796 Msa0840450:intron 45.0%
!! TCGGGTTTTAGCCATGTAGA+TGG + chr5_4:16149823-16149842 Msa0840450:intron 45.0%
!! CGGGTTTTAGCCATGTAGAT+GGG + chr5_4:16149824-16149843 Msa0840450:intron 45.0%
!! GGGTTTTAGCCATGTAGATG+GGG + chr5_4:16149825-16149844 Msa0840450:intron 45.0%
TCTATGATAGGGAACGTGGT+TGG - chr5_4:16149882-16149901 None:intergenic 45.0%
TGTGCAATAGGTGTCAGTTG+TGG + chr5_4:16150279-16150298 Msa0840450:intron 45.0%
GTGTCAGTTGTGGAAATGGA+TGG + chr5_4:16150289-16150308 Msa0840450:CDS 45.0%
TGGAAGAGAGGTTGCTTAAG+TGG - chr5_4:16150354-16150373 None:intergenic 45.0%
!! TTGAAGCATGCTGATTTCCC+TGG + chr5_4:16150403-16150422 Msa0840450:CDS 45.0%
GATTTCCCTGGTAGCAACAA+TGG + chr5_4:16150415-16150434 Msa0840450:CDS 45.0%
CTGTTCCATTGTTGCTACCA+GGG - chr5_4:16150423-16150442 None:intergenic 45.0%
GGTCTCTTCCAAACCATAGT+TGG + chr5_4:16150442-16150461 Msa0840450:CDS 45.0%
TTGAGCAGATAGTAGCAAGC+AGG + chr5_4:16150485-16150504 Msa0840450:CDS 45.0%
TGAGCAGATAGTAGCAAGCA+GGG + chr5_4:16150486-16150505 Msa0840450:CDS 45.0%
! TAAGCTTTAGCTGCTCCTAC+TGG - chr5_4:16150520-16150539 None:intergenic 45.0%
AGTAGGAGCAGCTAAAGCTT+AGG + chr5_4:16150519-16150538 Msa0840450:CDS 45.0%
!!! AAATAGATATTTTTTTAAAT+AGG - chr5_4:16145812-16145831 None:intergenic 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr5_4:16148477-16148496 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr5_4:16148478-16148497 None:intergenic 5.0%
!! AAAATAAAATAAAAATACAA+AGG + chr5_4:16149302-16149321 Msa0840450:intron 5.0%
! CTAGCAGCTGATTCAGGATG+TGG + chr5_4:16146227-16146246 Msa0840450:CDS 50.0%
TCTCCGTCCCTAAATTTCCG+TGG - chr5_4:16146643-16146662 None:intergenic 50.0%
TGGTCCACCATAGGCATTTG+TGG - chr5_4:16149089-16149108 None:intergenic 50.0%
! TGGTGGACCAACCTTAAGAG+TGG + chr5_4:16149099-16149118 Msa0840450:intron 50.0%
CCAACTGAGTCAAGCTCATG+AGG - chr5_4:16149618-16149637 None:intergenic 50.0%
CCTCATGAGCTTGACTCAGT+TGG + chr5_4:16149615-16149634 Msa0840450:intron 50.0%
! CAAGGTTTGGGGTTCAAACC+CGG + chr5_4:16149661-16149680 Msa0840450:intron 50.0%
CGACATCACATTGGTCCGAA+TGG + chr5_4:16149771-16149790 Msa0840450:intron 50.0%
! ACGTGGTTGGTCATGTTTGG+TGG - chr5_4:16149869-16149888 None:intergenic 50.0%
! GGAACGTGGTTGGTCATGTT+TGG - chr5_4:16149872-16149891 None:intergenic 50.0%
CCTGTTCCATTGTTGCTACC+AGG - chr5_4:16150424-16150443 None:intergenic 50.0%
CCTGGTAGCAACAATGGAAC+AGG + chr5_4:16150421-16150440 Msa0840450:CDS 50.0%
CAGAGAGACATGGCAGAACG+TGG + chr5_4:16147519-16147538 Msa0840450:intron 55.0%
GGTGCAGCAGAGCCACCAAA+AGG + chr5_4:16146290-16146309 Msa0840450:CDS 60.0%
GCAGCAGAGCCACCAAAAGG+TGG + chr5_4:16146293-16146312 Msa0840450:CDS 60.0%
AGCAGGGCTGAGACTCCAGT+AGG + chr5_4:16150502-16150521 Msa0840450:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 16145757 16150835 16145757 ID=Msa0840450;Name=Msa0840450
chr5_4 mRNA 16145757 16150835 16145757 ID=Msa0840450-mRNA-1;Parent=Msa0840450;Name=Msa0840450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=263|1|1|1|1|1|5|295|411
chr5_4 exon 16145757 16146588 16145757 ID=Msa0840450-mRNA-1:exon:6929;Parent=Msa0840450-mRNA-1
chr5_4 exon 16147328 16147412 16147328 ID=Msa0840450-mRNA-1:exon:6930;Parent=Msa0840450-mRNA-1
chr5_4 exon 16147522 16147606 16147522 ID=Msa0840450-mRNA-1:exon:6931;Parent=Msa0840450-mRNA-1
chr5_4 exon 16148101 16148345 16148101 ID=Msa0840450-mRNA-1:exon:6932;Parent=Msa0840450-mRNA-1
chr5_4 exon 16150289 16150835 16150289 ID=Msa0840450-mRNA-1:exon:6933;Parent=Msa0840450-mRNA-1
chr5_4 five_prime_UTR 16145757 16146019 16145757 ID=Msa0840450-mRNA-1:five_prime_utr;Parent=Msa0840450-mRNA-1
chr5_4 CDS 16146020 16146588 16146020 ID=Msa0840450-mRNA-1:cds;Parent=Msa0840450-mRNA-1
chr5_4 CDS 16147328 16147412 16147328 ID=Msa0840450-mRNA-1:cds;Parent=Msa0840450-mRNA-1
chr5_4 CDS 16147522 16147606 16147522 ID=Msa0840450-mRNA-1:cds;Parent=Msa0840450-mRNA-1
chr5_4 CDS 16148101 16148345 16148101 ID=Msa0840450-mRNA-1:cds;Parent=Msa0840450-mRNA-1
chr5_4 CDS 16150289 16150540 16150289 ID=Msa0840450-mRNA-1:cds;Parent=Msa0840450-mRNA-1
chr5_4 three_prime_UTR 16150541 16150835 16150541 ID=Msa0840450-mRNA-1:three_prime_utr;Parent=Msa0840450-mRNA-1
Gene Sequence

>Msa0840450

ATGGCAGCATGTACTGTCTACTCAACACAACCTCTAAGAACAAACATCTCAATTCCAACATCATCAAAAACACATGTTGGTTTTAATCAAAAACAGGTAGTGTTCTACACAACAACCAAAAAGAGCAACAACAGAAGAACTAACAGTAACAGCAGAAGATACTTGATAACATGTGGAGCAGGTGACTCACAGACAATTGTGATTGGTCTAGCAGCTGATTCAGGATGTGGAAAAAGTACTTTCATGAGAAGACTCACAAGTGTTTTTGGAGGTGCAGCAGAGCCACCAAAAGGTGGAAATCCTGATTCAAACACACTTATCAGTGACACAACCACTGTGATATGTTTGGATGATTACCATTCTTTGGATAGAACTGGTAGAAAAGAGAAAGGTGTTACTGCACTTGATCCAAGAGCTAATGATTTTGATCTCATGTATGAACAAGTTAAAGCTATTAAAGAGGGTGTTTCTGTTCAAAAACCTATTTATAATCATGTTACTGGTCTTTTGGATCCTCCTGAGCTTATTAAACCACCCAAAATCTTGGTCATTGAAGGTCTTCACCCAATGTATGATTCTCGAGTTAGAGATCTTTTGGACTTCAGTATCTACCTAGACATTAGCAATGAGGTGAAATTTGCTTGGAAAATTCAGAGAGACATGGCAGAACGTGGACACAGTCTTGAAAGTATCAAAGCTAGCATTGAAGCAAGGAAGCCTGATTTTGAAGCTTATATTGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTAATTCCAGATGATAATGAAGGAAAGATTTTAAGAGTGAGGTTGATCCAGAAAGAGGGTGTTAAATACTTTAGCCCAGTTTACTTGTTTGATGACGGTTCTACAATTTCATGGATACCATGTGGAAGGAAACTTACATGCTCTTATCCTGGCATTAAATTTTCCTATGGACCAGAGACTTACAAAGGAAATGAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGACTAGATGAACTAATATATGTTGAGAGCCACTTAAGCAACCTCTCTTCCAAATTCTATGGAGAAGTTACTCAACAAATGTTGAAGCATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATTTATTTGAGCAGATAGTAGCAAGCAGGGCTGAGACTCCAGTAGGAGCAGCTAAAGCTTAG

Protein sequence

>Msa0840450

MAACTVYSTQPLRTNISIPTSSKTHVGFNQKQVVFYTTTKKSNNRRTNSNSRRYLITCGAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKEGVSVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFSYGPETYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA*