AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1407860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407860 MtrunA17_Chr5g0404631 82.713 376 63 2 3 376 6 381 0.0 646
Msa1407860 MtrunA17_Chr8g0372821 70.652 368 107 1 8 374 1 368 0.0 556
Msa1407860 MtrunA17_Chr3g0107591 67.751 369 117 2 8 375 1 368 0.0 525
Msa1407860 MtrunA17_Chr4g0008111 65.405 370 116 2 8 376 1 359 0.0 509
Msa1407860 MtrunA17_Chr8g0372671 63.957 369 124 2 8 375 1 361 8.12e-178 498
Msa1407860 MtrunA17_Chr6g0475241 60.541 370 130 3 8 375 1 356 1.23e-161 457
Msa1407860 MtrunA17_Chr8g0343971 59.730 370 136 3 8 375 1 359 2.03e-159 451
Msa1407860 MtrunA17_Chr8g0343981 60.108 371 132 5 8 376 1 357 5.61e-157 445
Msa1407860 MtrunA17_Chr6g0475221 58.808 369 135 4 8 375 1 353 4.42e-154 438
Msa1407860 MtrunA17_Chr3g0144871 44.415 376 195 4 8 376 1 369 3.48e-111 329
Msa1407860 MtrunA17_Chr3g0107871 45.014 351 175 6 31 374 1 340 1.02e-99 299
Msa1407860 MtrunA17_Chr5g0419851 40.526 380 205 4 2 374 55 420 9.19e-98 297
Msa1407860 MtrunA17_Chr7g0252361 38.649 370 211 5 12 374 3 363 1.18e-89 274
Msa1407860 MtrunA17_Chr8g0372801 65.385 130 45 0 96 225 31 160 5.33e-61 194
Msa1407860 MtrunA17_Chr1g0155451 45.161 217 102 3 167 375 9 216 3.66e-56 183
Msa1407860 MtrunA17_Chr3g0100101 33.242 364 212 8 6 352 8 357 6.82e-55 185
Msa1407860 MtrunA17_Chr5g0444921 31.392 395 228 11 6 373 11 389 3.29e-51 176
Msa1407860 MtrunA17_Chr1g0208641 33.429 347 175 10 26 352 30 340 2.20e-47 165
Msa1407860 MtrunA17_Chr7g0252501 38.117 223 123 4 157 374 16 228 8.01e-46 157
Msa1407860 MtrunA17_Chr1g0155491 47.799 159 72 5 8 155 1 159 1.65e-40 142
Msa1407860 MtrunA17_Chr1g0155461 47.170 159 73 5 8 155 1 159 6.30e-40 140
Msa1407860 MtrunA17_Chr6g0455071 43.548 124 59 3 143 260 11 129 1.34e-30 113
Msa1407860 MtrunA17_Chr7g0252341 49.091 110 50 3 60 167 27 132 2.93e-26 102
Msa1407860 MtrunA17_Chr3g0099281 31.792 173 109 3 6 169 11 183 2.45e-24 99.0
Msa1407860 MtrunA17_Chr1g0155471 40.800 125 64 4 252 375 9 124 5.62e-23 93.2
Msa1407860 MtrunA17_Chr1g0155481 56.410 78 34 0 174 251 22 99 3.30e-22 91.7
Msa1407860 MtrunA17_Chr6g0455081 33.803 142 81 2 234 375 2 130 8.85e-19 81.6
Msa1407860 MtrunA17_Chr3g0099271 31.905 210 117 7 174 373 15 208 2.89e-18 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407860 AT1G19640.1 45.128 390 188 7 8 374 1 387 2.43e-100 303
Msa1407860 AT3G11480.1 41.192 369 196 5 12 375 27 379 3.42e-99 299
Msa1407860 AT4G36470.1 42.359 373 194 5 14 376 10 371 4.19e-96 291
Msa1407860 AT5G04370.1 39.523 377 212 6 2 375 27 390 3.20e-94 287
Msa1407860 AT5G04380.3 38.786 379 214 5 2 375 24 389 4.07e-94 286
Msa1407860 AT5G04370.3 39.523 377 212 6 2 375 32 395 4.83e-94 287
Msa1407860 AT5G66430.1 38.843 363 210 4 16 375 1 354 5.99e-94 285
Msa1407860 AT5G04370.2 39.523 377 212 6 2 375 46 409 7.45e-94 287
Msa1407860 AT5G38020.1 41.176 374 201 5 13 375 3 368 6.38e-93 283
Msa1407860 AT3G21950.1 39.516 372 210 5 13 375 3 368 4.60e-91 278
Msa1407860 AT5G04380.1 38.522 379 208 6 2 375 20 378 4.53e-90 276
Msa1407860 AT2G14060.1 39.894 376 213 6 6 375 4 372 5.12e-88 270
Msa1407860 AT5G04380.2 39.319 323 184 3 54 375 7 318 1.44e-85 262
Msa1407860 AT5G38020.2 41.692 331 176 4 54 375 7 329 1.02e-84 261
Msa1407860 AT3G21950.2 36.139 404 211 6 13 375 3 400 3.41e-84 261
Msa1407860 AT2G14060.2 42.553 235 130 2 6 238 4 235 9.16e-65 207
Msa1407860 AT1G68040.1 33.423 371 197 7 14 365 11 350 3.34e-62 204
Msa1407860 AT5G55250.1 33.159 383 228 9 8 373 13 384 1.09e-56 190
Msa1407860 AT1G15125.1 33.994 353 192 10 16 355 1 325 7.66e-53 179
Msa1407860 AT5G38100.1 34.153 366 193 10 16 365 10 343 2.88e-52 177
Msa1407860 AT5G55250.2 33.634 333 196 8 55 373 25 346 4.04e-50 172
Msa1407860 AT5G38100.3 35.220 318 162 8 60 365 35 320 6.82e-50 171
Msa1407860 AT5G37970.1 32.391 389 206 12 12 375 6 362 5.86e-49 169
Msa1407860 AT5G37990.1 31.688 385 214 10 12 375 6 362 1.70e-47 165
Msa1407860 AT5G56300.1 30.894 369 215 11 3 350 11 360 1.27e-46 164
Msa1407860 AT4G26420.1 32.787 366 211 11 5 351 2 351 4.36e-46 162
Msa1407860 AT5G38780.1 31.063 367 197 11 12 355 6 339 1.96e-45 160
Msa1407860 AT5G38780.2 31.613 310 169 8 60 355 10 290 9.20e-43 151
Msa1407860 AT3G44840.1 29.825 342 200 9 16 347 7 318 3.47e-39 143
Msa1407860 AT3G44860.1 33.922 283 167 6 16 290 7 277 1.92e-38 141
Msa1407860 AT3G44870.1 33.569 283 165 7 16 290 7 274 1.98e-37 139
Msa1407860 AT4G26420.3 36.325 234 130 7 5 227 2 227 1.46e-35 131
Msa1407860 AT5G38100.4 38.532 218 111 6 16 220 10 217 8.83e-35 129
Msa1407860 AT1G66720.1 30.903 288 172 8 16 290 9 282 8.95e-35 131
Msa1407860 AT5G38100.2 38.532 218 111 6 16 220 10 217 1.00e-34 128
Msa1407860 AT1G15125.2 33.202 253 143 7 16 255 1 240 1.24e-34 128
Msa1407860 AT4G26420.2 37.220 223 121 7 16 227 1 215 1.02e-33 126
Msa1407860 AT1G66700.1 27.635 351 199 9 16 347 9 323 1.21e-33 128
Msa1407860 AT1G66690.1 27.855 359 204 9 8 347 1 323 5.42e-30 118
Msa1407860 AT1G66700.3 33.023 215 122 6 16 220 9 211 1.89e-27 109

Find 77 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGACTTGGGTTGCTCTTC+TGG 0.124180 tig0023329:+7333 Msa1407860:CDS
GCAAAGAGTGCTGCTATATT+TGG 0.180266 tig0023329:+10686 Msa1407860:CDS
ATAAGCTTTGAGCACATTTA+TGG 0.195508 tig0023329:-10548 None:intergenic
TTCATGAACACTTGGTATTC+TGG 0.218070 tig0023329:-7432 None:intergenic
TGCAAATAACTCCTTACTTC+AGG 0.313555 tig0023329:+7098 Msa1407860:CDS
TTTAGCTAGTCGAATGTCTA+AGG 0.315844 tig0023329:+12259 Msa1407860:CDS
CTCATCAGAAGTAGAATTAG+AGG 0.323644 tig0023329:+12010 Msa1407860:CDS
TCTGCAATTCCTAGTCTTCT+TGG 0.325779 tig0023329:-7315 None:intergenic
TTATTGTTCTCTACATCATT+AGG 0.334453 tig0023329:-10496 None:intergenic
GTGTATATATCGGTATGATA+TGG 0.362711 tig0023329:+6945 None:intergenic
ACTAAAGAGAAATAGTGATA+TGG 0.366132 tig0023329:+7005 Msa1407860:exon
TAATGATGTAGAGAACAATA+AGG 0.377738 tig0023329:+10498 Msa1407860:CDS
AGTTCTGCAGAGGTTCCTTA+TGG 0.380431 tig0023329:-7289 None:intergenic
GATATCACAAATAAAGTGTT+TGG 0.380662 tig0023329:-7357 None:intergenic
TGCTCTTAACGACATGGTCT+TGG 0.380911 tig0023329:+10723 Msa1407860:CDS
TTGCCTGAGTCGCGCATTGA+TGG 0.383305 tig0023329:+12131 Msa1407860:CDS
CAAAGAGTGCTGCTATATTT+GGG 0.393058 tig0023329:+10687 Msa1407860:CDS
TAAGCTTTGAGCACATTTAT+GGG 0.393290 tig0023329:-10547 None:intergenic
GGCTGTGGTTGAACCTTTGT+TGG 0.404394 tig0023329:+12181 Msa1407860:CDS
CTGCAATTCCTAGTCTTCTT+GGG 0.410295 tig0023329:-7314 None:intergenic
CCTTTGTTGGTCAGTCACTT+TGG 0.420436 tig0023329:+12194 Msa1407860:CDS
ATTGGAATGCTTACGATGAT+TGG 0.424472 tig0023329:+12084 Msa1407860:CDS
GTGTTCATGAATGATCTTCC+TGG 0.435426 tig0023329:+7444 Msa1407860:CDS
ACCCCTTTCAACAAGCTCTT+CGG 0.454641 tig0023329:-10617 None:intergenic
GATTGGAATGATATTGATGT+TGG 0.456232 tig0023329:+12101 Msa1407860:CDS
GGTCCTTTAGGGAATCATAA+TGG 0.458040 tig0023329:+11944 Msa1407860:intron
TGCCGAAGAGCTTGTTGAAA+GGG 0.469328 tig0023329:+10615 Msa1407860:CDS
AATCATAATGGAGGAGCAAA+TGG 0.479030 tig0023329:+11956 Msa1407860:CDS
TAGAAGTAACAGAAATGCAT+TGG 0.491226 tig0023329:+12066 Msa1407860:CDS
AATGATGTAGAGAACAATAA+GGG 0.498989 tig0023329:+10499 Msa1407860:CDS
TGTATATATCGGTATGATAT+GGG 0.505271 tig0023329:+6946 None:intergenic
ATTGAAGGCTGTACGAGGAA+TGG 0.514974 tig0023329:-7617 None:intergenic
TCTTAACGACATGGTCTTGG+AGG 0.519014 tig0023329:+10726 Msa1407860:CDS
GCTCCATCAATGCGCGACTC+AGG 0.520496 tig0023329:-12134 None:intergenic
AGAGAAACTAAATGATGAAG+TGG 0.525919 tig0023329:+7509 Msa1407860:CDS
ACATGAGAGAGGAAGCCATA+AGG 0.526587 tig0023329:+7274 Msa1407860:CDS
AAGACTAGGAATTGCAGACT+TGG 0.526890 tig0023329:+7320 Msa1407860:CDS
ATTCCTCGTACAGCCTTCAA+TGG 0.532672 tig0023329:+7619 Msa1407860:CDS
CAATAAGGGTAATATTTACA+TGG 0.533461 tig0023329:+10513 Msa1407860:CDS
AAGAGAGACAAGAATGAATG+TGG 0.535408 tig0023329:+7032 Msa1407860:CDS
GATGAAGTGGAAGGTGGGAT+TGG 0.536438 tig0023329:+7522 Msa1407860:CDS
TGCTATTGCTCTTAACGACA+TGG 0.540305 tig0023329:+10717 Msa1407860:CDS
AAAGGTCATTTCTCTGACAA+AGG 0.541682 tig0023329:+7251 Msa1407860:CDS
AGAACTTTCCCAAGAAGACT+AGG 0.542573 tig0023329:+7306 Msa1407860:CDS
TAAATGATGAAGTGGAAGGT+GGG 0.543127 tig0023329:+7517 Msa1407860:CDS
CTTGGTATTCTGGAGACTCA+TGG 0.549163 tig0023329:-7422 None:intergenic
CTAAATGATGAAGTGGAAGG+TGG 0.560920 tig0023329:+7516 Msa1407860:CDS
GTGCCGAAGAGCTTGTTGAA+AGG 0.564001 tig0023329:+10614 Msa1407860:CDS
ATGCACATGAACGGAGGCAC+GGG 0.564111 tig0023329:+7063 Msa1407860:CDS
TTCTTGGGAAAGTTCTGCAG+AGG 0.566936 tig0023329:-7299 None:intergenic
TGGAGAAGCTATCATTGAAG+AGG 0.570876 tig0023329:+12214 Msa1407860:CDS
AATTCTACTTCTGATGAGGA+TGG 0.577914 tig0023329:-12005 None:intergenic
GTACCTGTGATAGCCATTGA+AGG 0.585405 tig0023329:-7632 None:intergenic
CTCTAATTCTACTTCTGATG+AGG 0.589922 tig0023329:-12009 None:intergenic
CCAAAGTGACTGACCAACAA+AGG 0.591313 tig0023329:-12194 None:intergenic
GATGAGGATGGTGTGTATTG+AGG 0.592884 tig0023329:-11993 None:intergenic
AGACTAGGAATTGCAGACTT+GGG 0.595161 tig0023329:+7321 Msa1407860:CDS
ATCTGAAGTTATCAAATCAG+TGG 0.595190 tig0023329:+7377 Msa1407860:CDS
TGCAAAATGCATGAGGGCTG+TGG 0.598009 tig0023329:+12166 Msa1407860:CDS
AAGCTTTGAGCACATTTATG+GGG 0.600673 tig0023329:-10546 None:intergenic
GGCACCCCATTGATAAAACA+TGG 0.602861 tig0023329:-7546 None:intergenic
AAACTAAATGATGAAGTGGA+AGG 0.604990 tig0023329:+7513 Msa1407860:CDS
CAGCCTTCAATGGCTATCAC+AGG 0.610040 tig0023329:+7629 Msa1407860:CDS
AGAGAGACAAGAATGAATGT+GGG 0.611967 tig0023329:+7033 Msa1407860:CDS
GAAGATCATTCATGAACACT+TGG 0.615429 tig0023329:-7440 None:intergenic
AATGCACATGAACGGAGGCA+CGG 0.619155 tig0023329:+7062 Msa1407860:CDS
GCCGAAGAGCTTGTTGAAAG+GGG 0.619904 tig0023329:+10616 Msa1407860:CDS
ATGTTATTGAAATCATTACC+AGG 0.628312 tig0023329:-7462 None:intergenic
ACAATGTTGCAAAATGCATG+AGG 0.631179 tig0023329:+12159 Msa1407860:CDS
GGACAAGTAATGCACATGAA+CGG 0.642407 tig0023329:+7054 Msa1407860:CDS
TCTGACAAAGGACATGAGAG+AGG 0.651169 tig0023329:+7263 Msa1407860:CDS
AACTCATACATCAAACAGGT+AGG 0.666437 tig0023329:-12484 None:intergenic
GAAGAGCTTGTTGAAAGGGG+TGG 0.671067 tig0023329:+10619 Msa1407860:CDS
CCTTTAGGGAATCATAATGG+AGG 0.682295 tig0023329:+11947 Msa1407860:intron
TAGCCATTGAAGGCTGTACG+AGG 0.684251 tig0023329:-7622 None:intergenic
CAATGTTGCAAAATGCATGA+GGG 0.686179 tig0023329:+12160 Msa1407860:CDS
CAAGTAATGCACATGAACGG+AGG 0.707571 tig0023329:+7057 Msa1407860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATAATTTATAGTTG+AGG + tig0023329:7913-7932 Msa1407860:intron 10.0%
!! AATTTATAATTTATAGTTGA+GGG + tig0023329:7914-7933 Msa1407860:intron 10.0%
!!! AATTAATGTTTTATTTTCTA+TGG - tig0023329:8780-8799 None:intergenic 10.0%
!!! TTGTTTCATATTTTATAATA+TGG + tig0023329:9510-9529 Msa1407860:intron 10.0%
!!! AATTTTGATTATATTAAAGT+GGG + tig0023329:9590-9609 Msa1407860:intron 10.0%
!!! CATATAAATTTTTGTTTTTA+AGG - tig0023329:10068-10087 None:intergenic 10.0%
!!! TTATAATATTTTTCTATTGA+AGG - tig0023329:10102-10121 None:intergenic 10.0%
!!! TTTTATTTAATTTATGTTGA+TGG + tig0023329:11471-11490 Msa1407860:intron 10.0%
!!! TTTATTTAATTTATGTTGAT+GGG + tig0023329:11472-11491 Msa1407860:intron 10.0%
!!! TGAAGTTTTATATTATGATA+TGG + tig0023329:7152-7171 Msa1407860:intron 15.0%
!! TCTATATAATATTAACTACT+AGG + tig0023329:7745-7764 Msa1407860:intron 15.0%
!! ATTTATAATTTATAGTTGAG+GGG + tig0023329:7915-7934 Msa1407860:intron 15.0%
!! AAAAAAAAATAGTGATTTAG+AGG + tig0023329:8922-8941 Msa1407860:intron 15.0%
!!! TTCTAATTTTTTTTGTTTTG+TGG - tig0023329:9004-9023 None:intergenic 15.0%
!!! AAATGTGTTTTTATTTTTAC+AGG + tig0023329:9142-9161 Msa1407860:intron 15.0%
!!! GTATAAATTTTAACATAAGA+GGG - tig0023329:9215-9234 None:intergenic 15.0%
!!! AGTATAAATTTTAACATAAG+AGG - tig0023329:9216-9235 None:intergenic 15.0%
!! AGTGCATATTTAATTATTAT+GGG - tig0023329:9275-9294 None:intergenic 15.0%
!! TAGTGCATATTTAATTATTA+TGG - tig0023329:9276-9295 None:intergenic 15.0%
!!! TAATTTTTTTTCTTAAATGG+TGG - tig0023329:9355-9374 None:intergenic 15.0%
!!! GAATTTTGATTATATTAAAG+TGG + tig0023329:9589-9608 Msa1407860:intron 15.0%
!! TTTGAAGAAAAATAATATTG+CGG - tig0023329:9617-9636 None:intergenic 15.0%
!!! TTTATTTCTAATTATCTAGT+TGG - tig0023329:9660-9679 None:intergenic 15.0%
!!! TAGATTTTAACATAATTAAG+AGG + tig0023329:9704-9723 Msa1407860:intron 15.0%
!!! TTTTCTAATATGTTTTGAAA+GGG + tig0023329:9774-9793 Msa1407860:intron 15.0%
!!! TGGTATGATTTTAATATTTT+TGG + tig0023329:10639-10658 Msa1407860:CDS 15.0%
!!! GGTATGATTTTAATATTTTT+GGG + tig0023329:10640-10659 Msa1407860:CDS 15.0%
!!! ACAATTTCAACATTTTTTAT+CGG - tig0023329:10999-11018 None:intergenic 15.0%
!! TAAAAAATGTTGAAATTGTT+AGG + tig0023329:11000-11019 Msa1407860:intron 15.0%
!!! ATTACTTTTGTCATTTTTTT+TGG + tig0023329:11144-11163 Msa1407860:intron 15.0%
!!! AACTATTACTTTTAAACAAA+TGG - tig0023329:11451-11470 None:intergenic 15.0%
!!! ACATTTTTATTGATTCTTTT+AGG + tig0023329:11790-11809 Msa1407860:intron 15.0%
!! TCTATAAAAAACTTTCAATA+AGG - tig0023329:11901-11920 None:intergenic 15.0%
!!! TTATTGAAAGTTTTTTATAG+AGG + tig0023329:11900-11919 Msa1407860:intron 15.0%
!!! AAAAAAAATAGTTTAGAGTT+AGG - tig0023329:12431-12450 None:intergenic 15.0%
!!! AAATTTTTAAACCTGAAGTA+AGG - tig0023329:7112-7131 None:intergenic 20.0%
!! ACAAATAGGTTTAAATACAA+AGG - tig0023329:7188-7207 None:intergenic 20.0%
!!! GTTTTGATTTTAAGACAAAT+AGG - tig0023329:7202-7221 None:intergenic 20.0%
!!! CCATATATACAATTTTCATT+TGG - tig0023329:7224-7243 None:intergenic 20.0%
!! CCAAATGAAAATTGTATATA+TGG + tig0023329:7221-7240 Msa1407860:intron 20.0%
!!! ATAAAATGCATTGTTTTAGT+TGG - tig0023329:7597-7616 None:intergenic 20.0%
!! ATTATTGTTTAGATAACGAA+AGG - tig0023329:7663-7682 None:intergenic 20.0%
!! TAATATGTAAACCACTAAAT+TGG + tig0023329:7679-7698 Msa1407860:intron 20.0%
!!! TTTATTTTCTAGATAACGAA+AGG - tig0023329:8525-8544 None:intergenic 20.0%
!!! ATAATTAATCTCTCTTTTGT+TGG - tig0023329:9031-9050 None:intergenic 20.0%
!! TATTTAATTATTATGGGATG+TGG - tig0023329:9269-9288 None:intergenic 20.0%
!! TTACTAAAGTCGATAAAATA+TGG - tig0023329:9461-9480 None:intergenic 20.0%
!! TTGAAGAAAAATAATATTGC+GGG - tig0023329:9616-9635 None:intergenic 20.0%
!!! GTTTTCTAATATGTTTTGAA+AGG + tig0023329:9773-9792 Msa1407860:intron 20.0%
!!! TTTCTAATATGTTTTGAAAG+GGG + tig0023329:9775-9794 Msa1407860:intron 20.0%
!!! GTTAGAATTCACATTTTTTA+AGG - tig0023329:9989-10008 None:intergenic 20.0%
!!! TTTTTTGTCAAGTAGTATAA+TGG - tig0023329:10011-10030 None:intergenic 20.0%
!! AACAGTAAAACATACAATAT+TGG + tig0023329:10194-10213 Msa1407860:intron 20.0%
!!! TTTTCTTTCTCAAATTAAGA+AGG - tig0023329:10319-10338 None:intergenic 20.0%
!!! TTTTTAAACAAGTGACTTAT+AGG + tig0023329:10888-10907 Msa1407860:intron 20.0%
!!! AAAGGTTTTTAGTAATATGT+TGG - tig0023329:11340-11359 None:intergenic 20.0%
!!! CTGAGTAAAAAAAAGAATTT+TGG - tig0023329:11651-11670 None:intergenic 20.0%
!!! TGTGTGTATACATTTTAAAT+TGG + tig0023329:11674-11693 Msa1407860:intron 20.0%
! ACTAAAGAGAAATAGTGATA+TGG + tig0023329:7005-7024 Msa1407860:exon 25.0%
! TGTATATATGGTACAGAAAA+AGG + tig0023329:7233-7252 Msa1407860:intron 25.0%
!! GATATCACAAATAAAGTGTT+TGG - tig0023329:7360-7379 None:intergenic 25.0%
! ATGTTATTGAAATCATTACC+AGG - tig0023329:7465-7484 None:intergenic 25.0%
!!! ATTTTGATGTCCCTAAAAAT+TGG + tig0023329:7779-7798 Msa1407860:intron 25.0%
! GTGTTTGAATTATGTTTATG+TGG + tig0023329:8218-8237 Msa1407860:intron 25.0%
! TGATATACAAACTTTAACGA+GGG - tig0023329:8334-8353 None:intergenic 25.0%
!! TCATTTGTAAGTTCTTTTGT+CGG - tig0023329:8683-8702 None:intergenic 25.0%
! TTAGTTACAGTTATCATGAT+TGG - tig0023329:8735-8754 None:intergenic 25.0%
! TTGTAATTCAAACATCTCAT+GGG - tig0023329:9246-9265 None:intergenic 25.0%
!!! TTCTAATATGTTTTGAAAGG+GGG + tig0023329:9776-9795 Msa1407860:intron 25.0%
!!! TTATAAAGCTAGTTTTTGAG+AGG - tig0023329:9888-9907 None:intergenic 25.0%
!!! TATTGGTTAGTTTTATGTTG+TGG + tig0023329:10211-10230 Msa1407860:intron 25.0%
!!! ATTGGTTAGTTTTATGTTGT+GGG + tig0023329:10212-10231 Msa1407860:intron 25.0%
!! TTTGGTATAATTTTCTAAGC+AGG - tig0023329:10276-10295 None:intergenic 25.0%
! GCTTAGAAAATTATACCAAA+TGG + tig0023329:10276-10295 Msa1407860:intron 25.0%
! ATGAAAAAAAAGAGTCCATT+TGG - tig0023329:10294-10313 None:intergenic 25.0%
!! ATTGTCGTTTGTCATTAATT+AGG + tig0023329:10471-10490 Msa1407860:intron 25.0%
! TTATTGTTCTCTACATCATT+AGG - tig0023329:10499-10518 None:intergenic 25.0%
! TAATGATGTAGAGAACAATA+AGG + tig0023329:10498-10517 Msa1407860:CDS 25.0%
! AATGATGTAGAGAACAATAA+GGG + tig0023329:10499-10518 Msa1407860:CDS 25.0%
! CAATAAGGGTAATATTTACA+TGG + tig0023329:10513-10532 Msa1407860:CDS 25.0%
! TTACCTAATTCATACAATCT+CGG - tig0023329:10928-10947 None:intergenic 25.0%
! AAATGTTGAAATTGTTAGGT+CGG + tig0023329:11004-11023 Msa1407860:intron 25.0%
!! TAATCAACGATTTTCAACTT+TGG - tig0023329:11128-11147 None:intergenic 25.0%
! AATCGATGAATTATTATCTG+CGG + tig0023329:11238-11257 Msa1407860:intron 25.0%
!! ATAATACTCTTTGTTATGCA+GGG + tig0023329:11305-11324 Msa1407860:intron 25.0%
! TTTAGTAATATGTTGGAAGA+CGG - tig0023329:11333-11352 None:intergenic 25.0%
! TTTAGGAGATTAAAAGTCTT+AGG + tig0023329:11807-11826 Msa1407860:intron 25.0%
! AATTGCCAAAATATTTGTCT+TGG + tig0023329:11923-11942 Msa1407860:intron 25.0%
!!! AATTAGAGGTTTTGAAAGAA+GGG + tig0023329:12024-12043 Msa1407860:CDS 25.0%
!!! TTTTTTTCTTTCTTTCTGAC+TGG + tig0023329:12347-12366 Msa1407860:three_prime_UTR 25.0%
! ATCTGAAGTTATCAAATCAG+TGG + tig0023329:7377-7396 Msa1407860:CDS 30.0%
AGAGAAACTAAATGATGAAG+TGG + tig0023329:7509-7528 Msa1407860:CDS 30.0%
AAACTAAATGATGAAGTGGA+AGG + tig0023329:7513-7532 Msa1407860:CDS 30.0%
! ATTGGTCCATGTTTTATCAA+TGG + tig0023329:7540-7559 Msa1407860:CDS 30.0%
! TTGGTCCATGTTTTATCAAT+GGG + tig0023329:7541-7560 Msa1407860:CDS 30.0%
ACTTCAGAAACAAATCACTA+AGG - tig0023329:7943-7962 None:intergenic 30.0%
GATCTCAAATCAAAAGTGAT+CGG - tig0023329:7974-7993 None:intergenic 30.0%
!!! GATCACTTTTGATTTGAGAT+CGG + tig0023329:7973-7992 Msa1407860:intron 30.0%
! AGTTTCTTGACTCAAGTTTT+TGG + tig0023329:8001-8020 Msa1407860:intron 30.0%
!!! TTTGTTTTTAGGAGTGACTT+TGG + tig0023329:8176-8195 Msa1407860:intron 30.0%
CTGATATACAAACTTTAACG+AGG - tig0023329:8335-8354 None:intergenic 30.0%
AGTTTGTATATCAGCATAGT+AGG + tig0023329:8341-8360 Msa1407860:intron 30.0%
GTTTGTATATCAGCATAGTA+GGG + tig0023329:8342-8361 Msa1407860:intron 30.0%
TTTGTATATCAGCATAGTAG+GGG + tig0023329:8343-8362 Msa1407860:intron 30.0%
AGTTTGTAAATACTCTTGTG+TGG - tig0023329:8625-8644 None:intergenic 30.0%
!! CAAGAGTATTTACAAACTCA+AGG + tig0023329:8627-8646 Msa1407860:intron 30.0%
ACAAATGAACACTCATACAA+AGG + tig0023329:8695-8714 Msa1407860:intron 30.0%
CTTGACTTATAGTTCATGAT+CGG - tig0023329:8810-8829 None:intergenic 30.0%
!! TTTTTCAAACTTCACGTAAG+TGG + tig0023329:9168-9187 Msa1407860:intron 30.0%
GTTGTAATTCAAACATCTCA+TGG - tig0023329:9247-9266 None:intergenic 30.0%
! TAACATAATTAAGAGGTGTG+AGG + tig0023329:9711-9730 Msa1407860:intron 30.0%
!!! TCTAATATGTTTTGAAAGGG+GGG + tig0023329:9777-9796 Msa1407860:intron 30.0%
! GTATAATTTTCTAAGCAGGA+AGG - tig0023329:10272-10291 None:intergenic 30.0%
!! TAAGCTTTGAGCACATTTAT+GGG - tig0023329:10550-10569 None:intergenic 30.0%
!! ATAAGCTTTGAGCACATTTA+TGG - tig0023329:10551-10570 None:intergenic 30.0%
GTTGAGCTAATACTTATAGA+CGG - tig0023329:10977-10996 None:intergenic 30.0%
!!! ATCGATTGGTGAGTTTTAAA+TGG - tig0023329:11225-11244 None:intergenic 30.0%
GCAGATAATAATTCATCGAT+TGG - tig0023329:11239-11258 None:intergenic 30.0%
ATCGATGAATTATTATCTGC+GGG + tig0023329:11239-11258 Msa1407860:intron 30.0%
! GATAATACTCTTTGTTATGC+AGG + tig0023329:11304-11323 Msa1407860:intron 30.0%
TTAGTAATATGTTGGAAGAC+GGG - tig0023329:11332-11351 None:intergenic 30.0%
! TGGTTCCTCTAAAAAAGAAA+AGG - tig0023329:11631-11650 None:intergenic 30.0%
! AAGGACCAAGACAAATATTT+TGG - tig0023329:11931-11950 None:intergenic 30.0%
AATATTTGTCTTGGTCCTTT+AGG + tig0023329:11932-11951 Msa1407860:intron 30.0%
ATATTTGTCTTGGTCCTTTA+GGG + tig0023329:11933-11952 Msa1407860:intron 30.0%
!!! GAATTAGAGGTTTTGAAAGA+AGG + tig0023329:12023-12042 Msa1407860:CDS 30.0%
TAGAAGTAACAGAAATGCAT+TGG + tig0023329:12066-12085 Msa1407860:CDS 30.0%
GATTGGAATGATATTGATGT+TGG + tig0023329:12101-12120 Msa1407860:CDS 30.0%
AAGAGAGACAAGAATGAATG+TGG + tig0023329:7032-7051 Msa1407860:CDS 35.0%
AGAGAGACAAGAATGAATGT+GGG + tig0023329:7033-7052 Msa1407860:CDS 35.0%
TGCAAATAACTCCTTACTTC+AGG + tig0023329:7098-7117 Msa1407860:CDS 35.0%
AAAGGTCATTTCTCTGACAA+AGG + tig0023329:7251-7270 Msa1407860:CDS 35.0%
TTCATGAACACTTGGTATTC+TGG - tig0023329:7435-7454 None:intergenic 35.0%
GAAGATCATTCATGAACACT+TGG - tig0023329:7443-7462 None:intergenic 35.0%
TAAATGATGAAGTGGAAGGT+GGG + tig0023329:7517-7536 Msa1407860:CDS 35.0%
! TGGTCCATGTTTTATCAATG+GGG + tig0023329:7542-7561 Msa1407860:CDS 35.0%
ATCCTACCATAAAAATCACC+AGG - tig0023329:7570-7589 None:intergenic 35.0%
GTTTAGATAACGAAAGGATG+TGG - tig0023329:7657-7676 None:intergenic 35.0%
!! GTTCAAGGCACCAATTTTTA+GGG - tig0023329:7792-7811 None:intergenic 35.0%
!! AGTTCAAGGCACCAATTTTT+AGG - tig0023329:7793-7812 None:intergenic 35.0%
AGTCCACAAGTAGAATACAA+AGG + tig0023329:7846-7865 Msa1407860:intron 35.0%
GTCCACAAGTAGAATACAAA+GGG + tig0023329:7847-7866 Msa1407860:intron 35.0%
AAGTAGAATACAAAGGGAGT+AGG + tig0023329:7853-7872 Msa1407860:intron 35.0%
! TTTTGTATAGAGAATGGCAG+GGG - tig0023329:7883-7902 None:intergenic 35.0%
! CTTTTGTATAGAGAATGGCA+GGG - tig0023329:7884-7903 None:intergenic 35.0%
!!! GTTGGCTTTTGTATAGAGAA+TGG - tig0023329:7889-7908 None:intergenic 35.0%
!! AGTGATTTGTTTCTGAAGTC+TGG + tig0023329:7944-7963 Msa1407860:intron 35.0%
! TTTGTGTTGATGAGAAGGTA+AGG + tig0023329:8124-8143 Msa1407860:intron 35.0%
!! AAGGTAAGGTGTTGTTGTTT+GGG + tig0023329:8138-8157 Msa1407860:intron 35.0%
!! TTGTTGTTTGGGATTTCAGT+GGG + tig0023329:8149-8168 Msa1407860:intron 35.0%
TTGTATATCAGCATAGTAGG+GGG + tig0023329:8344-8363 Msa1407860:intron 35.0%
TTCTAGATAACGAAAGGATG+TGG - tig0023329:8519-8538 None:intergenic 35.0%
! GTTCTTTTGTCGGTATAGTT+GGG - tig0023329:8673-8692 None:intergenic 35.0%
! AGTTCTTTTGTCGGTATAGT+TGG - tig0023329:8674-8693 None:intergenic 35.0%
GTTACAGTTATCATGATTGG+TGG - tig0023329:8732-8751 None:intergenic 35.0%
! ATTCAAGTTTCTCTCAGAAG+AGG + tig0023329:9740-9759 Msa1407860:intron 35.0%
! TTCAAGTTTCTCTCAGAAGA+GGG + tig0023329:9741-9760 Msa1407860:intron 35.0%
!!! CTAATATGTTTTGAAAGGGG+GGG + tig0023329:9778-9797 Msa1407860:intron 35.0%
! TCAAGTATCTTTGAAGAGTG+TGG + tig0023329:9839-9858 Msa1407860:intron 35.0%
TCTGTACATGTGGATCTTTA+AGG - tig0023329:10041-10060 None:intergenic 35.0%
TTAAGGATTCTCTGTACATG+TGG - tig0023329:10051-10070 None:intergenic 35.0%
!!! GTTAGTTTTATGTTGTGGGT+GGG + tig0023329:10216-10235 Msa1407860:intron 35.0%
!!! TTAGTTTTATGTTGTGGGTG+GGG + tig0023329:10217-10236 Msa1407860:intron 35.0%
TAGCGAGACTATGTTGAAAA+GGG - tig0023329:10348-10367 None:intergenic 35.0%
!! AAGCTTTGAGCACATTTATG+GGG - tig0023329:10549-10568 None:intergenic 35.0%
!! CAAAGAGTGCTGCTATATTT+GGG + tig0023329:10687-10706 Msa1407860:CDS 35.0%
TTGCCGAGATTGTATGAATT+AGG + tig0023329:10922-10941 Msa1407860:intron 35.0%
ACACATATAAATTGAGCTGC+CGG - tig0023329:11052-11071 None:intergenic 35.0%
!!! TTGGAGATGCTTCGATTTTT+TGG - tig0023329:11109-11128 None:intergenic 35.0%
!!! GCACACCTTTTCTTTTTTAG+AGG + tig0023329:11623-11642 Msa1407860:intron 35.0%
GAGATTAAAAGTCTTAGGAC+CGG + tig0023329:11812-11831 Msa1407860:intron 35.0%
TTAACATCTAGCTAGATGCA+AGG - tig0023329:11838-11857 None:intergenic 35.0%
AATTCTACTTCTGATGAGGA+TGG - tig0023329:12008-12027 None:intergenic 35.0%
CTCTAATTCTACTTCTGATG+AGG - tig0023329:12012-12031 None:intergenic 35.0%
CTCATCAGAAGTAGAATTAG+AGG + tig0023329:12010-12029 Msa1407860:CDS 35.0%
ATTGGAATGCTTACGATGAT+TGG + tig0023329:12084-12103 Msa1407860:CDS 35.0%
ACAATGTTGCAAAATGCATG+AGG + tig0023329:12159-12178 Msa1407860:CDS 35.0%
CAATGTTGCAAAATGCATGA+GGG + tig0023329:12160-12179 Msa1407860:CDS 35.0%
TTTAGCTAGTCGAATGTCTA+AGG + tig0023329:12259-12278 Msa1407860:CDS 35.0%
GGACAAGTAATGCACATGAA+CGG + tig0023329:7054-7073 Msa1407860:CDS 40.0%
AGAACTTTCCCAAGAAGACT+AGG + tig0023329:7306-7325 Msa1407860:CDS 40.0%
! CTGCAATTCCTAGTCTTCTT+GGG - tig0023329:7317-7336 None:intergenic 40.0%
! TCTGCAATTCCTAGTCTTCT+TGG - tig0023329:7318-7337 None:intergenic 40.0%
AAGACTAGGAATTGCAGACT+TGG + tig0023329:7320-7339 Msa1407860:CDS 40.0%
AGACTAGGAATTGCAGACTT+GGG + tig0023329:7321-7340 Msa1407860:CDS 40.0%
GTGTTCATGAATGATCTTCC+TGG + tig0023329:7444-7463 Msa1407860:CDS 40.0%
CTAAATGATGAAGTGGAAGG+TGG + tig0023329:7516-7535 Msa1407860:CDS 40.0%
! TGCCTGGTGATTTTTATGGT+AGG + tig0023329:7565-7584 Msa1407860:CDS 40.0%
GTAAACCACTAAATTGGACG+CGG + tig0023329:7685-7704 Msa1407860:intron 40.0%
! ATTCTACTTGTGGACTACAG+AGG - tig0023329:7842-7861 None:intergenic 40.0%
CTCCCTTTGTATTCTACTTG+TGG - tig0023329:7852-7871 None:intergenic 40.0%
! GCTTTTGTATAGAGAATGGC+AGG - tig0023329:7885-7904 None:intergenic 40.0%
!! GATTTGTTTCTGAAGTCTGG+TGG + tig0023329:7947-7966 Msa1407860:intron 40.0%
!!! CTCAAGTTTTTGGCGTGTTT+TGG + tig0023329:8011-8030 Msa1407860:intron 40.0%
!!! TGTTTTGGTGTTTTCTCCGA+CGG + tig0023329:8026-8045 Msa1407860:intron 40.0%
! GTGAGTTTGTGTTGATGAGA+AGG + tig0023329:8119-8138 Msa1407860:intron 40.0%
!! GAAGGTAAGGTGTTGTTGTT+TGG + tig0023329:8137-8156 Msa1407860:intron 40.0%
!! GTTGTTGTTTGGGATTTCAG+TGG + tig0023329:8148-8167 Msa1407860:intron 40.0%
!! CAGTGGGTGTGTTTGTTTTT+AGG + tig0023329:8165-8184 Msa1407860:intron 40.0%
AATTTGGCGTAGCCTATACA+GGG - tig0023329:8389-8408 None:intergenic 40.0%
TGAACACTCATACAAAGGAG+CGG + tig0023329:8700-8719 Msa1407860:intron 40.0%
!!! GGTTAGTTTTATGTTGTGGG+TGG + tig0023329:10215-10234 Msa1407860:intron 40.0%
GACGAGAGATAACGAGTTTA+GGG - tig0023329:10250-10269 None:intergenic 40.0%
AGCGAGACTATGTTGAAAAG+GGG - tig0023329:10347-10366 None:intergenic 40.0%
GTAGCGAGACTATGTTGAAA+AGG - tig0023329:10349-10368 None:intergenic 40.0%
!! GCAAAGAGTGCTGCTATATT+TGG + tig0023329:10686-10705 Msa1407860:CDS 40.0%
TGCTATTGCTCTTAACGACA+TGG + tig0023329:10717-10736 Msa1407860:CDS 40.0%
CATACAATCTCGGCAATATC+TGG - tig0023329:10918-10937 None:intergenic 40.0%
ACATATAAATTGAGCTGCCG+GGG - tig0023329:11050-11069 None:intergenic 40.0%
CACATATAAATTGAGCTGCC+GGG - tig0023329:11051-11070 None:intergenic 40.0%
CTTAAGTTTGCACACATGAG+AGG + tig0023329:11180-11199 Msa1407860:intron 40.0%
GATGTTAAAGGAGGAAGTGA+GGG - tig0023329:11553-11572 None:intergenic 40.0%
! AAGAAAAGGTGTGCATTGAG+CGG - tig0023329:11617-11636 None:intergenic 40.0%
TGGAGAAGCTATCATTGAAG+AGG + tig0023329:12214-12233 Msa1407860:CDS 40.0%
CAAGTAATGCACATGAACGG+AGG + tig0023329:7057-7076 Msa1407860:CDS 45.0%
TCTGACAAAGGACATGAGAG+AGG + tig0023329:7263-7282 Msa1407860:CDS 45.0%
ACATGAGAGAGGAAGCCATA+AGG + tig0023329:7274-7293 Msa1407860:CDS 45.0%
AGTTCTGCAGAGGTTCCTTA+TGG - tig0023329:7292-7311 None:intergenic 45.0%
TTCTTGGGAAAGTTCTGCAG+AGG - tig0023329:7302-7321 None:intergenic 45.0%
! CTTGGTATTCTGGAGACTCA+TGG - tig0023329:7425-7444 None:intergenic 45.0%
GGCACCCCATTGATAAAACA+TGG - tig0023329:7549-7568 None:intergenic 45.0%
!! TGTTTTATCAATGGGGTGCC+TGG + tig0023329:7549-7568 Msa1407860:CDS 45.0%
ATTGAAGGCTGTACGAGGAA+TGG - tig0023329:7620-7639 None:intergenic 45.0%
ATTCCTCGTACAGCCTTCAA+TGG + tig0023329:7619-7638 Msa1407860:CDS 45.0%
GTACCTGTGATAGCCATTGA+AGG - tig0023329:7635-7654 None:intergenic 45.0%
AAAGACCGCGTCCAATTTAG+TGG - tig0023329:7693-7712 None:intergenic 45.0%
TTGACTCAGTTGTTGTGACG+AGG + tig0023329:8092-8111 Msa1407860:intron 45.0%
TGGTGCAAGTAACGTGTGAT+AGG + tig0023329:8196-8215 Msa1407860:intron 45.0%
CACTGTGCAAAACGAACAGA+GGG - tig0023329:8249-8268 None:intergenic 45.0%
TCACTGTGCAAAACGAACAG+AGG - tig0023329:8250-8269 None:intergenic 45.0%
ATTTGGCGTAGCCTATACAG+GGG - tig0023329:8388-8407 None:intergenic 45.0%
CAATTTGGCGTAGCCTATAC+AGG - tig0023329:8390-8409 None:intergenic 45.0%
CTGTATAGGCTACGCCAAAT+TGG + tig0023329:8388-8407 Msa1407860:intron 45.0%
TATAGGCTACGCCAAATTGG+TGG + tig0023329:8391-8410 Msa1407860:intron 45.0%
ATAGGCTACGCCAAATTGGT+GGG + tig0023329:8392-8411 Msa1407860:intron 45.0%
TTCATTCCTCGTACAGCCAA+TGG + tig0023329:8481-8500 Msa1407860:intron 45.0%
ACTGTGATTCACCCCACATA+AGG + tig0023329:8584-8603 Msa1407860:intron 45.0%
! TCTTTTGCACGCCTTATGTG+GGG - tig0023329:8598-8617 None:intergenic 45.0%
! GTCTTTTGCACGCCTTATGT+GGG - tig0023329:8599-8618 None:intergenic 45.0%
! TGTCTTTTGCACGCCTTATG+TGG - tig0023329:8600-8619 None:intergenic 45.0%
GTCAACTGAGCTATGCTCAT+GGG - tig0023329:9951-9970 None:intergenic 45.0%
TGTCAACTGAGCTATGCTCA+TGG - tig0023329:9952-9971 None:intergenic 45.0%
ATGAGCATAGCTCAGTTGAC+AGG + tig0023329:9951-9970 Msa1407860:intron 45.0%
GGACGAGAGATAACGAGTTT+AGG - tig0023329:10251-10270 None:intergenic 45.0%
!! TGCCGAAGAGCTTGTTGAAA+GGG + tig0023329:10615-10634 Msa1407860:CDS 45.0%
ACCCCTTTCAACAAGCTCTT+CGG - tig0023329:10620-10639 None:intergenic 45.0%
TGCTCTTAACGACATGGTCT+TGG + tig0023329:10723-10742 Msa1407860:CDS 45.0%
! TCTTAACGACATGGTCTTGG+AGG + tig0023329:10726-10745 Msa1407860:CDS 45.0%
TCATGATCGGATTCTAACCC+CGG + tig0023329:11030-11049 Msa1407860:intron 45.0%
ATTATCTGCGGGACGAGAAT+TGG + tig0023329:11250-11269 Msa1407860:intron 45.0%
TTATCTGCGGGACGAGAATT+GGG + tig0023329:11251-11270 Msa1407860:intron 45.0%
GTAGATCTCCACAGTCTCTA+TGG - tig0023329:11501-11520 None:intergenic 45.0%
AGAGACTGTGGAGATCTACA+TGG + tig0023329:11502-11521 Msa1407860:intron 45.0%
ACTGTGGAGATCTACATGGA+TGG + tig0023329:11506-11525 Msa1407860:intron 45.0%
GGATGTTAAAGGAGGAAGTG+AGG - tig0023329:11554-11573 None:intergenic 45.0%
TCGTGACTGGATGTTAAAGG+AGG - tig0023329:11562-11581 None:intergenic 45.0%
CACTCGTGACTGGATGTTAA+AGG - tig0023329:11565-11584 None:intergenic 45.0%
CTTTAACATCCAGTCACGAG+TGG + tig0023329:11563-11582 Msa1407860:intron 45.0%
ATTCCTGGCCATTATGCTCA+GGG - tig0023329:11589-11608 None:intergenic 45.0%
AGCATAATGGCCAGGAATGA+CGG + tig0023329:11591-11610 Msa1407860:intron 45.0%
GATGAGGATGGTGTGTATTG+AGG - tig0023329:11996-12015 None:intergenic 45.0%
CCAAAGTGACTGACCAACAA+AGG - tig0023329:12197-12216 None:intergenic 45.0%
CCTTTGTTGGTCAGTCACTT+TGG + tig0023329:12194-12213 Msa1407860:CDS 45.0%
!! TAAATTATAAATTATTATGT+TGG - tig0023329:7907-7926 None:intergenic 5.0%
!!! TTATAATTTTTTTTCTTAAA+TGG - tig0023329:9358-9377 None:intergenic 5.0%
!! AGAAATAAAAAAAAATATTA+AGG + tig0023329:9671-9690 Msa1407860:intron 5.0%
!! GAAATAAAAAAAAATATTAA+GGG + tig0023329:9672-9691 Msa1407860:intron 5.0%
!! TTATATAACAATTATAAAAA+AGG - tig0023329:11358-11377 None:intergenic 5.0%
AATGCACATGAACGGAGGCA+CGG + tig0023329:7062-7081 Msa1407860:CDS 50.0%
GATGAAGTGGAAGGTGGGAT+TGG + tig0023329:7522-7541 Msa1407860:CDS 50.0%
!! GGGGTGCCTGGTGATTTTTA+TGG + tig0023329:7561-7580 Msa1407860:CDS 50.0%
TAGCCATTGAAGGCTGTACG+AGG - tig0023329:7625-7644 None:intergenic 50.0%
CAGCCTTCAATGGCTATCAC+AGG + tig0023329:7629-7648 Msa1407860:CDS 50.0%
! CTACTTGTGGACTACAGAGG+TGG - tig0023329:7839-7858 None:intergenic 50.0%
TCAGTTGTTGTGACGAGGTG+AGG + tig0023329:8097-8116 Msa1407860:intron 50.0%
TTTGGCGTAGCCTATACAGG+GGG - tig0023329:8387-8406 None:intergenic 50.0%
! TGATAGCCATTGGCTGTACG+AGG - tig0023329:8490-8509 None:intergenic 50.0%
GTGGTACGTGTGATAGCCAT+TGG - tig0023329:8500-8519 None:intergenic 50.0%
!! GTGCCGAAGAGCTTGTTGAA+AGG + tig0023329:10614-10633 Msa1407860:CDS 50.0%
!! GCCGAAGAGCTTGTTGAAAG+GGG + tig0023329:10616-10635 Msa1407860:CDS 50.0%
!! GAAGAGCTTGTTGAAAGGGG+TGG + tig0023329:10619-10638 Msa1407860:CDS 50.0%
GTTAGGTCGGACGTCATGAT+CGG + tig0023329:11017-11036 Msa1407860:intron 50.0%
ATGGGTCTCCATAGAGACTG+TGG + tig0023329:11490-11509 Msa1407860:intron 50.0%
GTTAAAGGAGGAAGTGAGGG+TGG - tig0023329:11550-11569 None:intergenic 50.0%
CATTCCTGGCCATTATGCTC+AGG - tig0023329:11590-11609 None:intergenic 50.0%
CATCTAGCTAGATGCAAGGC+CGG - tig0023329:11834-11853 None:intergenic 50.0%
TGCAAAATGCATGAGGGCTG+TGG + tig0023329:12166-12185 Msa1407860:CDS 50.0%
GGCTGTGGTTGAACCTTTGT+TGG + tig0023329:12181-12200 Msa1407860:CDS 50.0%
! ATGCACATGAACGGAGGCAC+GGG + tig0023329:7063-7082 Msa1407860:CDS 55.0%
! GCAGACTTGGGTTGCTCTTC+TGG + tig0023329:7333-7352 Msa1407860:CDS 55.0%
!!! GTGTTTTCTCCGACGGACTG+TGG + tig0023329:8033-8052 Msa1407860:intron 55.0%
CCGATCAATCCACAGTCCGT+CGG - tig0023329:8045-8064 None:intergenic 55.0%
!! CCGACGGACTGTGGATTGAT+CGG + tig0023329:8042-8061 Msa1407860:intron 55.0%
! ACGGACTGTGGATTGATCGG+TGG + tig0023329:8045-8064 Msa1407860:intron 55.0%
! GACTGTGGATTGATCGGTGG+TGG + tig0023329:8048-8067 Msa1407860:intron 55.0%
TAGCCTATACAGGGGGCCAT+AGG - tig0023329:8380-8399 None:intergenic 55.0%
! GCTACGCCAAATTGGTGGGT+GGG + tig0023329:8396-8415 Msa1407860:intron 55.0%
! GAAGCACCCACCCACCAATT+TGG - tig0023329:8405-8424 None:intergenic 55.0%
GCGGGACGAGAATTGGGAAA+AGG + tig0023329:11257-11276 Msa1407860:intron 55.0%
ACGAGTGGCCCTGAGCATAA+TGG + tig0023329:11578-11597 Msa1407860:intron 55.0%
TTGCCTGAGTCGCGCATTGA+TGG + tig0023329:12131-12150 Msa1407860:CDS 55.0%
ACGGGAGGGACGGTAGTTCA+AGG - tig0023329:7807-7826 None:intergenic 60.0%
! TGTGGACTACAGAGGTGGCC+CGG - tig0023329:7834-7853 None:intergenic 60.0%
CCTATACAGGGGGCCATAGG+AGG - tig0023329:8377-8396 None:intergenic 60.0%
CCTCCTATGGCCCCCTGTAT+AGG + tig0023329:8374-8393 Msa1407860:intron 60.0%
GGCTACGCCAAATTGGTGGG+TGG + tig0023329:8395-8414 Msa1407860:intron 60.0%
TGGCCCTGAGCATAATGGCC+AGG + tig0023329:11583-11602 Msa1407860:intron 60.0%
CATTGAGCGGCCGTCATTCC+TGG - tig0023329:11604-11623 None:intergenic 60.0%
GCTCCATCAATGCGCGACTC+AGG - tig0023329:12137-12156 None:intergenic 60.0%
! GTGGACTACAGAGGTGGCCC+GGG - tig0023329:7833-7852 None:intergenic 65.0%
AGGGGGACCACGACCTCCTA+TGG + tig0023329:8361-8380 Msa1407860:intron 65.0%
TGCTCAGGGCCACTCGTGAC+TGG - tig0023329:11575-11594 None:intergenic 65.0%
TACCGTCCCTCCCGTCCACC+CGG + tig0023329:7812-7831 Msa1407860:intron 70.0%
ACAGAGGTGGCCCGGGTGGA+CGG - tig0023329:7826-7845 None:intergenic 70.0%
GACTACAGAGGTGGCCCGGG+TGG - tig0023329:7830-7849 None:intergenic 70.0%
CAGGGGGCCATAGGAGGTCG+TGG - tig0023329:8371-8390 None:intergenic 70.0%
ACCGTCCCTCCCGTCCACCC+GGG + tig0023329:7813-7832 Msa1407860:intron 75.0%
CAGAGGTGGCCCGGGTGGAC+GGG - tig0023329:7825-7844 None:intergenic 75.0%
! GCCCGGGTGGACGGGAGGGA+CGG - tig0023329:7817-7836 None:intergenic 80.0%
! GGTGGCCCGGGTGGACGGGA+GGG - tig0023329:7821-7840 None:intergenic 80.0%
! AGGTGGCCCGGGTGGACGGG+AGG - tig0023329:7822-7841 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0023329 gene 6957 12491 6957 ID=Msa1407860;Name=Msa1407860
tig0023329 mRNA 6957 12491 6957 ID=Msa1407860-mRNA-1;Parent=Msa1407860;Name=Msa1407860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=67|1|1|1|0.66|0.5|4|160|376
tig0023329 exon 6957 7119 6957 ID=Msa1407860-mRNA-1:exon:25333;Parent=Msa1407860-mRNA-1
tig0023329 exon 7249 7650 7249 ID=Msa1407860-mRNA-1:exon:25334;Parent=Msa1407860-mRNA-1
tig0023329 exon 10493 10747 10493 ID=Msa1407860-mRNA-1:exon:25335;Parent=Msa1407860-mRNA-1
tig0023329 exon 11954 12491 11954 ID=Msa1407860-mRNA-1:exon:25336;Parent=Msa1407860-mRNA-1
tig0023329 five_prime_UTR 6957 7023 6957 ID=Msa1407860-mRNA-1:five_prime_utr;Parent=Msa1407860-mRNA-1
tig0023329 CDS 7024 7119 7024 ID=Msa1407860-mRNA-1:cds;Parent=Msa1407860-mRNA-1
tig0023329 CDS 7249 7650 7249 ID=Msa1407860-mRNA-1:cds;Parent=Msa1407860-mRNA-1
tig0023329 CDS 10493 10747 10493 ID=Msa1407860-mRNA-1:cds;Parent=Msa1407860-mRNA-1
tig0023329 CDS 11954 12331 11954 ID=Msa1407860-mRNA-1:cds;Parent=Msa1407860-mRNA-1
tig0023329 three_prime_UTR 12332 12491 12332 ID=Msa1407860-mRNA-1:three_prime_utr;Parent=Msa1407860-mRNA-1
Gene Sequence

>Msa1407860

ATGGAGAAAAGAGAGACAAGAATGAATGTGGGACAAGTAATGCACATGAACGGAGGCACGGGACACACAAGCTATGCAAATAACTCCTTACTTCAGAAAAAGGTCATTTCTCTGACAAAGGACATGAGAGAGGAAGCCATAAGGAACCTCTGCAGAACTTTCCCAAGAAGACTAGGAATTGCAGACTTGGGTTGCTCTTCTGGACCAAACACTTTATTTGTGATATCTGAAGTTATCAAATCAGTGGAGAAGCTTTGCAGAGAACAGAACCATGAGTCTCCAGAATACCAAGTGTTCATGAATGATCTTCCTGGTAATGATTTCAATAACATTTTTAAGTCACTTGATAGATTCAAAGAGAAACTAAATGATGAAGTGGAAGGTGGGATTGGTCCATGTTTTATCAATGGGGTGCCTGGTGATTTTTATGGTAGGATCTTTCCAACTAAAACAATGCATTTTATCCATTCCTCGTACAGCCTTCAATGGCTATCACAGGTACCTAATGATGTAGAGAACAATAAGGGTAATATTTACATGGCTAAGACAAGCCCCATAAATGTGCTCAAAGCTTATTACATGCAGTTTCAAAGAGATTTCTCATTATTTCTCAAGTGTCGTGCCGAAGAGCTTGTTGAAAGGGGTGGTATGATTTTAATATTTTTGGGACGAAAAAGCAACGATCAATATAGCAAAGAGTGCTGCTATATTTGGGAGCTTCTTGCTATTGCTCTTAACGACATGGTCTTGGAGGGAATCATAATGGAGGAGCAAATGGACACTTTCAACATTCCTCAATACACACCATCCTCATCAGAAGTAGAATTAGAGGTTTTGAAAGAAGGGTCATTCACTATTGATCGTTTAGAAGTAACAGAAATGCATTGGAATGCTTACGATGATTGGAATGATATTGATGTTGGAAGTAGCTTGCCTGAGTCGCGCATTGATGGAGCATACAATGTTGCAAAATGCATGAGGGCTGTGGTTGAACCTTTGTTGGTCAGTCACTTTGGAGAAGCTATCATTGAAGAGGTTTTTCGACGATATGTAAAGATTTTAGCTAGTCGAATGTCTAAGGAAAAAACTGAATTTATTAATGTGAGCATATCACTCACTAAAAAAGTATAA

Protein sequence

>Msa1407860

MEKRETRMNVGQVMHMNGGTGHTSYANNSLLQKKVISLTKDMREEAIRNLCRTFPRRLGIADLGCSSGPNTLFVISEVIKSVEKLCREQNHESPEYQVFMNDLPGNDFNNIFKSLDRFKEKLNDEVEGGIGPCFINGVPGDFYGRIFPTKTMHFIHSSYSLQWLSQVPNDVENNKGNIYMAKTSPINVLKAYYMQFQRDFSLFLKCRAEELVERGGMILIFLGRKSNDQYSKECCYIWELLAIALNDMVLEGIIMEEQMDTFNIPQYTPSSSEVELEVLKEGSFTIDRLEVTEMHWNAYDDWNDIDVGSSLPESRIDGAYNVAKCMRAVVEPLLVSHFGEAIIEEVFRRYVKILASRMSKEKTEFINVSISLTKKV*