AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0431310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431310 MtrunA17_Chr3g0136201 94.787 211 11 0 1 211 1 211 1.70e-141 393
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431310 AT5G21430.1 58.480 171 69 2 42 210 47 217 5.06e-62 192
Msa0431310 AT5G21430.2 57.895 171 69 3 42 210 47 216 1.64e-59 186

Find 69 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTCCCCTGTTCATTCTT+TGG 0.213829 3_2:+83386897 None:intergenic
ATTAAAGAAGATGATTCTTT+TGG 0.261740 3_2:+83388028 None:intergenic
TTATGGTTTATAAAATTATC+TGG 0.266697 3_2:-83386791 Msa0431310:three_prime_UTR
AGACATACTTAACAAGAAAT+TGG 0.280104 3_2:-83387596 Msa0431310:CDS
AATTCATTGCAGCCCTCTTA+TGG 0.284290 3_2:-83386808 Msa0431310:three_prime_UTR
ATTGGAGAGTCAAGGTTTAG+AGG 0.312619 3_2:-83387620 Msa0431310:CDS
GCCATTTGAGGTTGATGTTT+CGG 0.315689 3_2:-83387377 Msa0431310:CDS
AAGTCCCCTGTTCATTCTTT+GGG 0.321452 3_2:+83386898 None:intergenic
TAATAACAAGGTTCGAGAAT+TGG 0.322385 3_2:-83387638 Msa0431310:CDS
CTAGCATTTGTGTTATCAAT+TGG 0.334884 3_2:-83387138 Msa0431310:CDS
ATTACAGATGCAGATCATTA+TGG 0.366825 3_2:-83387878 Msa0431310:CDS
CCAGAGGAGAACTGTGCAAA+AGG 0.395734 3_2:+83386930 None:intergenic
TTATCTCCCAAAGAATGAAC+AGG 0.401092 3_2:-83386904 Msa0431310:three_prime_UTR
TGTGTCTGTGTTATCTTCTC+TGG 0.408544 3_2:+83387408 None:intergenic
ACCTTGTTATTATAAGCAAT+TGG 0.411448 3_2:+83387649 None:intergenic
CACATACGTTTGGCCATTTG+AGG 0.421335 3_2:-83387389 Msa0431310:CDS
TCATACATTCTTCTTTCATC+CGG 0.438615 3_2:+83387442 None:intergenic
ATGTTTCTGACCATGTCATA+TGG 0.442154 3_2:+83387830 None:intergenic
TTGCTTGGAGTGTTGTTACT+TGG 0.444787 3_2:+83388175 None:intergenic
GTTGAGAATCCTAGCTTGCT+TGG 0.458033 3_2:+83388160 None:intergenic
CTGGTTGGTCCTACATCCTC+AGG 0.458680 3_2:+83387195 None:intergenic
ACCGAAACATCAACCTCAAA+TGG 0.480733 3_2:+83387376 None:intergenic
TTAGTTTAACAAAGAGTGAA+AGG 0.497310 3_2:+83386866 None:intergenic
GCAGATCATTATGGTAGACT+TGG 0.523390 3_2:-83387869 Msa0431310:CDS
GCAAATTGTAGTGGTGGTGG+TGG 0.527140 3_2:+83388201 None:intergenic
AATATTTCATGTGAACCTGC+AGG 0.528281 3_2:-83388360 None:intergenic
TAGTTTAACAAAGAGTGAAA+GGG 0.529442 3_2:+83386867 None:intergenic
GGTTGTAGATAACACATTTG+TGG 0.531201 3_2:-83388339 Msa0431310:five_prime_UTR
AGCTCTAGTGAAAACTCTGC+AGG 0.533335 3_2:-83388088 Msa0431310:CDS
TAGAAAGTATCCAACCAGTC+TGG 0.536223 3_2:+83387176 None:intergenic
CTGGTTGGATACTTTCTAGC+GGG 0.536918 3_2:-83387171 Msa0431310:CDS
GAAACAATGATATAATGTAA+TGG 0.538453 3_2:-83387044 Msa0431310:three_prime_UTR
ATAACACAGACACATACGTT+TGG 0.539673 3_2:-83387399 Msa0431310:CDS
ATGAAAGAAGAATGTATGAC+TGG 0.543817 3_2:-83387438 Msa0431310:CDS
GATGTTTCGGTACTTCAAGA+AGG 0.552371 3_2:-83387364 Msa0431310:CDS
CAGAGGAGAACTGTGCAAAA+GGG 0.552503 3_2:+83386931 None:intergenic
ATGTCATATGGACATCCTCT+TGG 0.556234 3_2:+83387842 None:intergenic
AGTGGTGGTGGTGGAGGACA+AGG 0.559487 3_2:+83388210 None:intergenic
AATTGTAGTGGTGGTGGTGG+AGG 0.559668 3_2:+83388204 None:intergenic
TTGGATACTTTCTAGCGGGA+TGG 0.565729 3_2:-83387167 Msa0431310:CDS
GTAATTAGTACCTGTGGTGG+AGG 0.566183 3_2:+83387337 None:intergenic
ATGTGTTATCTACAACCTGC+AGG 0.570534 3_2:+83388345 None:intergenic
GTTCGAGAATTGGAGAGTCA+AGG 0.571210 3_2:-83387628 Msa0431310:CDS
ATGAAATCAAACAATAAACA+TGG 0.573981 3_2:+83388292 None:intergenic
GTAGGACCAACCAGACTGGT+TGG 0.579118 3_2:-83387186 Msa0431310:CDS
TGAAAACTCTGCAGGTTCAA+CGG 0.580415 3_2:-83388080 Msa0431310:CDS
AATAAATGAAAACTTAGCAA+TGG 0.584133 3_2:-83388233 Msa0431310:exon
CAAGTAATTAGTACCTGTGG+TGG 0.590198 3_2:+83387334 None:intergenic
GGATGTAGGACCAACCAGAC+TGG 0.590754 3_2:-83387190 Msa0431310:CDS
TGGCAGGAACCTGAGGATGT+AGG 0.592315 3_2:-83387204 Msa0431310:intron
AACAACACTCCAAGCAAGCT+AGG 0.601547 3_2:-83388169 Msa0431310:CDS
ATACACTATCATGTCATCGC+CGG 0.604771 3_2:-83387461 Msa0431310:CDS
GCCAATTGCTTATAATAACA+AGG 0.606196 3_2:-83387650 Msa0431310:CDS
AATGCAAATTGTAGTGGTGG+TGG 0.612182 3_2:+83388198 None:intergenic
TATCTCCCAAAGAATGAACA+GGG 0.615745 3_2:-83386903 Msa0431310:three_prime_UTR
AGGTTCAACGGAGGTTGAGT+CGG 0.620899 3_2:-83388068 Msa0431310:CDS
AAGTATCCAACCAGTCTGGT+TGG 0.621927 3_2:+83387180 None:intergenic
AGAAGGAGATCCTCCACCAC+AGG 0.633320 3_2:-83387347 Msa0431310:intron
ACTTGGAATGCAAATTGTAG+TGG 0.640752 3_2:+83388192 None:intergenic
GGTAGACTTGGCTTACCAAG+AGG 0.643717 3_2:-83387857 Msa0431310:CDS
TGAAATCAAACAATAAACAT+GGG 0.646221 3_2:+83388293 None:intergenic
TGGAAAACATACGTATGCCA+CGG 0.652153 3_2:+83387978 None:intergenic
ACATGGGTGAGATAATGCAA+TGG 0.662642 3_2:+83388309 None:intergenic
TGGAATGCAAATTGTAGTGG+TGG 0.664067 3_2:+83388195 None:intergenic
AAGAGGATGTCCATATGACA+TGG 0.675165 3_2:-83387840 Msa0431310:intron
ACTGGTTGGATACTTTCTAG+CGG 0.691428 3_2:-83387172 Msa0431310:CDS
ATCTCCCAAAGAATGAACAG+GGG 0.692806 3_2:-83386902 Msa0431310:three_prime_UTR
AACGTCGAAAGAGCTCTCCG+TGG 0.728158 3_2:-83387995 Msa0431310:CDS
AAACTCTGCAGGTTCAACGG+AGG 0.732304 3_2:-83388077 Msa0431310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCATTGTTTCTTTTTTT+GGG + chr3_2:83388090-83388109 None:intergenic 15.0%
!!! TATATCATTGTTTCTTTTTT+TGG + chr3_2:83388091-83388110 None:intergenic 15.0%
!!! TAATTTTATAAACCATAAGA+GGG + chr3_2:83388348-83388367 None:intergenic 15.0%
!!! ATAATTTTATAAACCATAAG+AGG + chr3_2:83388349-83388368 None:intergenic 15.0%
!! TTATGGTTTATAAAATTATC+TGG - chr3_2:83388350-83388369 Msa0431310:five_prime_UTR 15.0%
!! TATGGTTTATAAAATTATCT+GGG - chr3_2:83388351-83388370 Msa0431310:five_prime_UTR 15.0%
!!! ATATCATTGTTTCTTTTTTT+GGG + chr3_2:83388090-83388109 None:intergenic 15.0%
!!! TATATCATTGTTTCTTTTTT+TGG + chr3_2:83388091-83388110 None:intergenic 15.0%
!!! TAATTTTATAAACCATAAGA+GGG + chr3_2:83388348-83388367 None:intergenic 15.0%
!!! ATAATTTTATAAACCATAAG+AGG + chr3_2:83388349-83388368 None:intergenic 15.0%
!! TGAAATCAAACAATAAACAT+GGG + chr3_2:83386851-83386870 None:intergenic 20.0%
!! ATGAAATCAAACAATAAACA+TGG + chr3_2:83386852-83386871 None:intergenic 20.0%
!!! ATTGCTAAGTTTTCATTTAT+TGG + chr3_2:83386909-83386928 None:intergenic 20.0%
!! AATAAATGAAAACTTAGCAA+TGG - chr3_2:83386908-83386927 Msa0431310:three_prime_UTR 20.0%
!!! ATTAAAGAAGATGATTCTTT+TGG + chr3_2:83387116-83387135 None:intergenic 20.0%
!! ATATAATAACAACAACATTG+TGG + chr3_2:83387186-83387205 None:intergenic 20.0%
!! TTGAAATGATCCATTTAAAA+CGG - chr3_2:83387899-83387918 Msa0431310:intron 20.0%
!!! TATCATTGTTTCTTTTTTTG+GGG + chr3_2:83388089-83388108 None:intergenic 20.0%
!! GAAACAATGATATAATGTAA+TGG - chr3_2:83388097-83388116 Msa0431310:CDS 20.0%
!! TGAAATCAAACAATAAACAT+GGG + chr3_2:83386851-83386870 None:intergenic 20.0%
!! ATGAAATCAAACAATAAACA+TGG + chr3_2:83386852-83386871 None:intergenic 20.0%
!!! ATTGCTAAGTTTTCATTTAT+TGG + chr3_2:83386909-83386928 None:intergenic 20.0%
!! AATAAATGAAAACTTAGCAA+TGG - chr3_2:83386908-83386927 Msa0431310:three_prime_UTR 20.0%
!!! ATTAAAGAAGATGATTCTTT+TGG + chr3_2:83387116-83387135 None:intergenic 20.0%
!! ATATAATAACAACAACATTG+TGG + chr3_2:83387186-83387205 None:intergenic 20.0%
!! TTGAAATGATCCATTTAAAA+CGG - chr3_2:83387899-83387918 Msa0431310:intron 20.0%
!!! TATCATTGTTTCTTTTTTTG+GGG + chr3_2:83388089-83388108 None:intergenic 20.0%
!! GAAACAATGATATAATGTAA+TGG - chr3_2:83388097-83388116 Msa0431310:CDS 20.0%
! GAATTGAATTGATGAAGATA+TGG - chr3_2:83387226-83387245 Msa0431310:intron 25.0%
!! TGGTCAGAAACATTTTATAT+CGG - chr3_2:83387321-83387340 Msa0431310:intron 25.0%
! TCGGATTTAATTCATATGAA+AGG - chr3_2:83387340-83387359 Msa0431310:intron 25.0%
!!! ACCTTGTTATTATAAGCAAT+TGG + chr3_2:83387495-83387514 None:intergenic 25.0%
! AGACATACTTAACAAGAAAT+TGG - chr3_2:83387545-83387564 Msa0431310:intron 25.0%
! TGTGTTTGCATCATTATTAT+AGG - chr3_2:83387609-83387628 Msa0431310:CDS 25.0%
! TTGGTTAACCTTAATTGTAT+AGG - chr3_2:83387653-83387672 Msa0431310:CDS 25.0%
! GTATGATTCCTATACAATTA+AGG + chr3_2:83387664-83387683 None:intergenic 25.0%
!! TTTCTATTTCTCAACTTCTT+AGG - chr3_2:83387830-83387849 Msa0431310:intron 25.0%
!!! ATTGGAAATACCGTTTTAAA+TGG + chr3_2:83387912-83387931 None:intergenic 25.0%
!!! ATCATTGTTTCTTTTTTTGG+GGG + chr3_2:83388088-83388107 None:intergenic 25.0%
!! AAGCAACAGATAAAGTTTTA+AGG + chr3_2:83388190-83388209 None:intergenic 25.0%
! TAGTTTAACAAAGAGTGAAA+GGG + chr3_2:83388277-83388296 None:intergenic 25.0%
! TTAGTTTAACAAAGAGTGAA+AGG + chr3_2:83388278-83388297 None:intergenic 25.0%
! GAATTGAATTGATGAAGATA+TGG - chr3_2:83387226-83387245 Msa0431310:intron 25.0%
!! TGGTCAGAAACATTTTATAT+CGG - chr3_2:83387321-83387340 Msa0431310:intron 25.0%
! TCGGATTTAATTCATATGAA+AGG - chr3_2:83387340-83387359 Msa0431310:intron 25.0%
!!! ACCTTGTTATTATAAGCAAT+TGG + chr3_2:83387495-83387514 None:intergenic 25.0%
! AGACATACTTAACAAGAAAT+TGG - chr3_2:83387545-83387564 Msa0431310:intron 25.0%
! TGTGTTTGCATCATTATTAT+AGG - chr3_2:83387609-83387628 Msa0431310:CDS 25.0%
! TTGGTTAACCTTAATTGTAT+AGG - chr3_2:83387653-83387672 Msa0431310:CDS 25.0%
! GTATGATTCCTATACAATTA+AGG + chr3_2:83387664-83387683 None:intergenic 25.0%
!! TTTCTATTTCTCAACTTCTT+AGG - chr3_2:83387830-83387849 Msa0431310:intron 25.0%
!!! ATTGGAAATACCGTTTTAAA+TGG + chr3_2:83387912-83387931 None:intergenic 25.0%
!!! ATCATTGTTTCTTTTTTTGG+GGG + chr3_2:83388088-83388107 None:intergenic 25.0%
!! AAGCAACAGATAAAGTTTTA+AGG + chr3_2:83388190-83388209 None:intergenic 25.0%
! TAGTTTAACAAAGAGTGAAA+GGG + chr3_2:83388277-83388296 None:intergenic 25.0%
! TTAGTTTAACAAAGAGTGAA+AGG + chr3_2:83388278-83388297 None:intergenic 25.0%
!!! TTTTTTCTGTAAAACAAGCG+CGG - chr3_2:83387015-83387034 Msa0431310:three_prime_UTR 30.0%
!! TGATTCTTTTGGAAGTTCAA+TGG + chr3_2:83387105-83387124 None:intergenic 30.0%
ATTACAGATGCAGATCATTA+TGG - chr3_2:83387263-83387282 Msa0431310:intron 30.0%
ATGTCACTCTATACTTTAAC+AGG - chr3_2:83387467-83387486 Msa0431310:CDS 30.0%
GCCAATTGCTTATAATAACA+AGG - chr3_2:83387491-83387510 Msa0431310:intron 30.0%
TAATAACAAGGTTCGAGAAT+TGG - chr3_2:83387503-83387522 Msa0431310:intron 30.0%
TCATACATTCTTCTTTCATC+CGG + chr3_2:83387702-83387721 None:intergenic 30.0%
ATGAAAGAAGAATGTATGAC+TGG - chr3_2:83387703-83387722 Msa0431310:intron 30.0%
AAACAAGTAATTAGTACCTG+TGG + chr3_2:83387813-83387832 None:intergenic 30.0%
! AACGGTATTTCCAATTTTCA+TGG - chr3_2:83387917-83387936 Msa0431310:intron 30.0%
CTAGCATTTGTGTTATCAAT+TGG - chr3_2:83388003-83388022 Msa0431310:CDS 30.0%
!!! TTTTTTCTGTAAAACAAGCG+CGG - chr3_2:83387015-83387034 Msa0431310:three_prime_UTR 30.0%
!! TGATTCTTTTGGAAGTTCAA+TGG + chr3_2:83387105-83387124 None:intergenic 30.0%
ATTACAGATGCAGATCATTA+TGG - chr3_2:83387263-83387282 Msa0431310:intron 30.0%
ATGTCACTCTATACTTTAAC+AGG - chr3_2:83387467-83387486 Msa0431310:CDS 30.0%
GCCAATTGCTTATAATAACA+AGG - chr3_2:83387491-83387510 Msa0431310:intron 30.0%
TAATAACAAGGTTCGAGAAT+TGG - chr3_2:83387503-83387522 Msa0431310:intron 30.0%
TCATACATTCTTCTTTCATC+CGG + chr3_2:83387702-83387721 None:intergenic 30.0%
ATGAAAGAAGAATGTATGAC+TGG - chr3_2:83387703-83387722 Msa0431310:intron 30.0%
AAACAAGTAATTAGTACCTG+TGG + chr3_2:83387813-83387832 None:intergenic 30.0%
! AACGGTATTTCCAATTTTCA+TGG - chr3_2:83387917-83387936 Msa0431310:intron 30.0%
CTAGCATTTGTGTTATCAAT+TGG - chr3_2:83388003-83388022 Msa0431310:CDS 30.0%
GGTTGTAGATAACACATTTG+TGG - chr3_2:83386802-83386821 Msa0431310:three_prime_UTR 35.0%
ACTTGGAATGCAAATTGTAG+TGG + chr3_2:83386952-83386971 None:intergenic 35.0%
! ATGTTTCTGACCATGTCATA+TGG + chr3_2:83387314-83387333 None:intergenic 35.0%
TATTATAGGTGAGACTTGAG+AGG - chr3_2:83387623-83387642 Msa0431310:CDS 35.0%
ATAACACAGACACATACGTT+TGG - chr3_2:83387742-83387761 Msa0431310:intron 35.0%
! CTATTTCTCAACTTCTTAGG+AGG - chr3_2:83387833-83387852 Msa0431310:intron 35.0%
! GTATTTCCAATTTTCATGGC+AGG - chr3_2:83387921-83387940 Msa0431310:intron 35.0%
TTATCTCCCAAAGAATGAAC+AGG - chr3_2:83388237-83388256 Msa0431310:five_prime_UTR 35.0%
TATCTCCCAAAGAATGAACA+GGG - chr3_2:83388238-83388257 Msa0431310:five_prime_UTR 35.0%
GGTTGTAGATAACACATTTG+TGG - chr3_2:83386802-83386821 Msa0431310:three_prime_UTR 35.0%
ACTTGGAATGCAAATTGTAG+TGG + chr3_2:83386952-83386971 None:intergenic 35.0%
! ATGTTTCTGACCATGTCATA+TGG + chr3_2:83387314-83387333 None:intergenic 35.0%
TATTATAGGTGAGACTTGAG+AGG - chr3_2:83387623-83387642 Msa0431310:CDS 35.0%
ATAACACAGACACATACGTT+TGG - chr3_2:83387742-83387761 Msa0431310:intron 35.0%
! CTATTTCTCAACTTCTTAGG+AGG - chr3_2:83387833-83387852 Msa0431310:intron 35.0%
! GTATTTCCAATTTTCATGGC+AGG - chr3_2:83387921-83387940 Msa0431310:intron 35.0%
TTATCTCCCAAAGAATGAAC+AGG - chr3_2:83388237-83388256 Msa0431310:five_prime_UTR 35.0%
TATCTCCCAAAGAATGAACA+GGG - chr3_2:83388238-83388257 Msa0431310:five_prime_UTR 35.0%
ATGTGTTATCTACAACCTGC+AGG + chr3_2:83386799-83386818 None:intergenic 40.0%
ACATGGGTGAGATAATGCAA+TGG + chr3_2:83386835-83386854 None:intergenic 40.0%
AATGCAAATTGTAGTGGTGG+TGG + chr3_2:83386946-83386965 None:intergenic 40.0%
TGGAATGCAAATTGTAGTGG+TGG + chr3_2:83386949-83386968 None:intergenic 40.0%
!! TTGCTTGGAGTGTTGTTACT+TGG + chr3_2:83386969-83386988 None:intergenic 40.0%
TGAAAACTCTGCAGGTTCAA+CGG - chr3_2:83387061-83387080 Msa0431310:three_prime_UTR 40.0%
TGGAAAACATACGTATGCCA+CGG + chr3_2:83387166-83387185 None:intergenic 40.0%
GCAGATCATTATGGTAGACT+TGG - chr3_2:83387272-83387291 Msa0431310:intron 40.0%
ATGTCATATGGACATCCTCT+TGG + chr3_2:83387302-83387321 None:intergenic 40.0%
AAGAGGATGTCCATATGACA+TGG - chr3_2:83387301-83387320 Msa0431310:intron 40.0%
ATTGGAGAGTCAAGGTTTAG+AGG - chr3_2:83387521-83387540 Msa0431310:intron 40.0%
ATACACTATCATGTCATCGC+CGG - chr3_2:83387680-83387699 Msa0431310:intron 40.0%
TGTGTCTGTGTTATCTTCTC+TGG + chr3_2:83387736-83387755 None:intergenic 40.0%
!! GCCATTTGAGGTTGATGTTT+CGG - chr3_2:83387764-83387783 Msa0431310:intron 40.0%
ACCGAAACATCAACCTCAAA+TGG + chr3_2:83387768-83387787 None:intergenic 40.0%
GATGTTTCGGTACTTCAAGA+AGG - chr3_2:83387777-83387796 Msa0431310:intron 40.0%
CAAGTAATTAGTACCTGTGG+TGG + chr3_2:83387810-83387829 None:intergenic 40.0%
!! AACTTCTTAGGAGGTGTTTG+AGG - chr3_2:83387842-83387861 Msa0431310:CDS 40.0%
!! TAGAAAGTATCCAACCAGTC+TGG + chr3_2:83387968-83387987 None:intergenic 40.0%
ACTGGTTGGATACTTTCTAG+CGG - chr3_2:83387969-83387988 Msa0431310:intron 40.0%
! CTTTGGGAGATAAAAACCAG+AGG + chr3_2:83388230-83388249 None:intergenic 40.0%
ATCTCCCAAAGAATGAACAG+GGG - chr3_2:83388239-83388258 Msa0431310:five_prime_UTR 40.0%
AAGTCCCCTGTTCATTCTTT+GGG + chr3_2:83388246-83388265 None:intergenic 40.0%
AATTCATTGCAGCCCTCTTA+TGG - chr3_2:83388333-83388352 Msa0431310:five_prime_UTR 40.0%
ATGTGTTATCTACAACCTGC+AGG + chr3_2:83386799-83386818 None:intergenic 40.0%
ACATGGGTGAGATAATGCAA+TGG + chr3_2:83386835-83386854 None:intergenic 40.0%
AATGCAAATTGTAGTGGTGG+TGG + chr3_2:83386946-83386965 None:intergenic 40.0%
TGGAATGCAAATTGTAGTGG+TGG + chr3_2:83386949-83386968 None:intergenic 40.0%
!! TTGCTTGGAGTGTTGTTACT+TGG + chr3_2:83386969-83386988 None:intergenic 40.0%
TGAAAACTCTGCAGGTTCAA+CGG - chr3_2:83387061-83387080 Msa0431310:three_prime_UTR 40.0%
TGGAAAACATACGTATGCCA+CGG + chr3_2:83387166-83387185 None:intergenic 40.0%
GCAGATCATTATGGTAGACT+TGG - chr3_2:83387272-83387291 Msa0431310:intron 40.0%
ATGTCATATGGACATCCTCT+TGG + chr3_2:83387302-83387321 None:intergenic 40.0%
AAGAGGATGTCCATATGACA+TGG - chr3_2:83387301-83387320 Msa0431310:intron 40.0%
ATTGGAGAGTCAAGGTTTAG+AGG - chr3_2:83387521-83387540 Msa0431310:intron 40.0%
ATACACTATCATGTCATCGC+CGG - chr3_2:83387680-83387699 Msa0431310:intron 40.0%
TGTGTCTGTGTTATCTTCTC+TGG + chr3_2:83387736-83387755 None:intergenic 40.0%
!! GCCATTTGAGGTTGATGTTT+CGG - chr3_2:83387764-83387783 Msa0431310:intron 40.0%
ACCGAAACATCAACCTCAAA+TGG + chr3_2:83387768-83387787 None:intergenic 40.0%
GATGTTTCGGTACTTCAAGA+AGG - chr3_2:83387777-83387796 Msa0431310:intron 40.0%
CAAGTAATTAGTACCTGTGG+TGG + chr3_2:83387810-83387829 None:intergenic 40.0%
!! AACTTCTTAGGAGGTGTTTG+AGG - chr3_2:83387842-83387861 Msa0431310:CDS 40.0%
!! TAGAAAGTATCCAACCAGTC+TGG + chr3_2:83387968-83387987 None:intergenic 40.0%
ACTGGTTGGATACTTTCTAG+CGG - chr3_2:83387969-83387988 Msa0431310:intron 40.0%
! CTTTGGGAGATAAAAACCAG+AGG + chr3_2:83388230-83388249 None:intergenic 40.0%
ATCTCCCAAAGAATGAACAG+GGG - chr3_2:83388239-83388258 Msa0431310:five_prime_UTR 40.0%
AAGTCCCCTGTTCATTCTTT+GGG + chr3_2:83388246-83388265 None:intergenic 40.0%
AATTCATTGCAGCCCTCTTA+TGG - chr3_2:83388333-83388352 Msa0431310:five_prime_UTR 40.0%
AACAACACTCCAAGCAAGCT+AGG - chr3_2:83386972-83386991 Msa0431310:three_prime_UTR 45.0%
!! GTTGAGAATCCTAGCTTGCT+TGG + chr3_2:83386984-83387003 None:intergenic 45.0%
! AGCTCTAGTGAAAACTCTGC+AGG - chr3_2:83387053-83387072 Msa0431310:three_prime_UTR 45.0%
GTTCGAGAATTGGAGAGTCA+AGG - chr3_2:83387513-83387532 Msa0431310:intron 45.0%
TATAGGTGAGACTTGAGAGG+TGG - chr3_2:83387626-83387645 Msa0431310:CDS 45.0%
AGACTTGAGAGGTGGTGATT+TGG - chr3_2:83387634-83387653 Msa0431310:CDS 45.0%
CACATACGTTTGGCCATTTG+AGG - chr3_2:83387752-83387771 Msa0431310:intron 45.0%
GTAATTAGTACCTGTGGTGG+AGG + chr3_2:83387807-83387826 None:intergenic 45.0%
!! TTCTTAGGAGGTGTTTGAGG+TGG - chr3_2:83387845-83387864 Msa0431310:CDS 45.0%
CAGGTTCCTGCCATGAAAAT+TGG + chr3_2:83387930-83387949 None:intergenic 45.0%
! ATTTTCATGGCAGGAACCTG+AGG - chr3_2:83387930-83387949 Msa0431310:intron 45.0%
AAGTATCCAACCAGTCTGGT+TGG + chr3_2:83387964-83387983 None:intergenic 45.0%
! CTGGTTGGATACTTTCTAGC+GGG - chr3_2:83387970-83387989 Msa0431310:intron 45.0%
! TTGGATACTTTCTAGCGGGA+TGG - chr3_2:83387974-83387993 Msa0431310:intron 45.0%
CAGAGGAGAACTGTGCAAAA+GGG + chr3_2:83388213-83388232 None:intergenic 45.0%
CAAGTCCCCTGTTCATTCTT+TGG + chr3_2:83388247-83388266 None:intergenic 45.0%
AACAACACTCCAAGCAAGCT+AGG - chr3_2:83386972-83386991 Msa0431310:three_prime_UTR 45.0%
!! GTTGAGAATCCTAGCTTGCT+TGG + chr3_2:83386984-83387003 None:intergenic 45.0%
! AGCTCTAGTGAAAACTCTGC+AGG - chr3_2:83387053-83387072 Msa0431310:three_prime_UTR 45.0%
GTTCGAGAATTGGAGAGTCA+AGG - chr3_2:83387513-83387532 Msa0431310:intron 45.0%
TATAGGTGAGACTTGAGAGG+TGG - chr3_2:83387626-83387645 Msa0431310:CDS 45.0%
AGACTTGAGAGGTGGTGATT+TGG - chr3_2:83387634-83387653 Msa0431310:CDS 45.0%
CACATACGTTTGGCCATTTG+AGG - chr3_2:83387752-83387771 Msa0431310:intron 45.0%
GTAATTAGTACCTGTGGTGG+AGG + chr3_2:83387807-83387826 None:intergenic 45.0%
!! TTCTTAGGAGGTGTTTGAGG+TGG - chr3_2:83387845-83387864 Msa0431310:CDS 45.0%
CAGGTTCCTGCCATGAAAAT+TGG + chr3_2:83387930-83387949 None:intergenic 45.0%
! ATTTTCATGGCAGGAACCTG+AGG - chr3_2:83387930-83387949 Msa0431310:intron 45.0%
AAGTATCCAACCAGTCTGGT+TGG + chr3_2:83387964-83387983 None:intergenic 45.0%
! CTGGTTGGATACTTTCTAGC+GGG - chr3_2:83387970-83387989 Msa0431310:intron 45.0%
! TTGGATACTTTCTAGCGGGA+TGG - chr3_2:83387974-83387993 Msa0431310:intron 45.0%
CAGAGGAGAACTGTGCAAAA+GGG + chr3_2:83388213-83388232 None:intergenic 45.0%
CAAGTCCCCTGTTCATTCTT+TGG + chr3_2:83388247-83388266 None:intergenic 45.0%
!! AATTGTAGTGGTGGTGGTGG+AGG + chr3_2:83386940-83386959 None:intergenic 50.0%
!! GCAAATTGTAGTGGTGGTGG+TGG + chr3_2:83386943-83386962 None:intergenic 50.0%
AAACTCTGCAGGTTCAACGG+AGG - chr3_2:83387064-83387083 Msa0431310:three_prime_UTR 50.0%
AGGTTCAACGGAGGTTGAGT+CGG - chr3_2:83387073-83387092 Msa0431310:three_prime_UTR 50.0%
GGTAGACTTGGCTTACCAAG+AGG - chr3_2:83387284-83387303 Msa0431310:intron 50.0%
CCAGAGGAGAACTGTGCAAA+AGG + chr3_2:83388214-83388233 None:intergenic 50.0%
! CCTTTTGCACAGTTCTCCTC+TGG - chr3_2:83388211-83388230 Msa0431310:CDS 50.0%
!! AATTGTAGTGGTGGTGGTGG+AGG + chr3_2:83386940-83386959 None:intergenic 50.0%
!! GCAAATTGTAGTGGTGGTGG+TGG + chr3_2:83386943-83386962 None:intergenic 50.0%
AAACTCTGCAGGTTCAACGG+AGG - chr3_2:83387064-83387083 Msa0431310:three_prime_UTR 50.0%
AGGTTCAACGGAGGTTGAGT+CGG - chr3_2:83387073-83387092 Msa0431310:three_prime_UTR 50.0%
GGTAGACTTGGCTTACCAAG+AGG - chr3_2:83387284-83387303 Msa0431310:intron 50.0%
CCAGAGGAGAACTGTGCAAA+AGG + chr3_2:83388214-83388233 None:intergenic 50.0%
! CCTTTTGCACAGTTCTCCTC+TGG - chr3_2:83388211-83388230 Msa0431310:CDS 50.0%
AACGTCGAAAGAGCTCTCCG+TGG - chr3_2:83387146-83387165 Msa0431310:CDS 55.0%
AGAAGGAGATCCTCCACCAC+AGG - chr3_2:83387794-83387813 Msa0431310:intron 55.0%
TGGCAGGAACCTGAGGATGT+AGG - chr3_2:83387937-83387956 Msa0431310:intron 55.0%
! CTGGTTGGTCCTACATCCTC+AGG + chr3_2:83387949-83387968 None:intergenic 55.0%
GGATGTAGGACCAACCAGAC+TGG - chr3_2:83387951-83387970 Msa0431310:intron 55.0%
GTAGGACCAACCAGACTGGT+TGG - chr3_2:83387955-83387974 Msa0431310:intron 55.0%
AACGTCGAAAGAGCTCTCCG+TGG - chr3_2:83387146-83387165 Msa0431310:CDS 55.0%
AGAAGGAGATCCTCCACCAC+AGG - chr3_2:83387794-83387813 Msa0431310:intron 55.0%
TGGCAGGAACCTGAGGATGT+AGG - chr3_2:83387937-83387956 Msa0431310:intron 55.0%
! CTGGTTGGTCCTACATCCTC+AGG + chr3_2:83387949-83387968 None:intergenic 55.0%
GGATGTAGGACCAACCAGAC+TGG - chr3_2:83387951-83387970 Msa0431310:intron 55.0%
GTAGGACCAACCAGACTGGT+TGG - chr3_2:83387955-83387974 Msa0431310:intron 55.0%
!! AGTGGTGGTGGTGGAGGACA+AGG + chr3_2:83386934-83386953 None:intergenic 60.0%
!! AGTGGTGGTGGTGGAGGACA+AGG + chr3_2:83386934-83386953 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 83386791 83388372 83386791 ID=Msa0431310;Name=Msa0431310
chr3_2 mRNA 83386791 83388372 83386791 ID=Msa0431310-mRNA-1;Parent=Msa0431310;Name=Msa0431310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=136|1|1|1|1|1|5|334|211
chr3_2 exon 83386791 83387220 83386791 ID=Msa0431310-mRNA-1:exon:23252;Parent=Msa0431310-mRNA-1
chr3_2 exon 83387348 83387488 83387348 ID=Msa0431310-mRNA-1:exon:23251;Parent=Msa0431310-mRNA-1
chr3_2 exon 83387585 83387674 83387585 ID=Msa0431310-mRNA-1:exon:23250;Parent=Msa0431310-mRNA-1
chr3_2 exon 83387841 83387902 83387841 ID=Msa0431310-mRNA-1:exon:23249;Parent=Msa0431310-mRNA-1
chr3_2 exon 83387990 83388372 83387990 ID=Msa0431310-mRNA-1:exon:23248;Parent=Msa0431310-mRNA-1
chr3_2 five_prime_UTR 83388237 83388372 83388237 ID=Msa0431310-mRNA-1:five_prime_utr;Parent=Msa0431310-mRNA-1
chr3_2 CDS 83387990 83388236 83387990 ID=Msa0431310-mRNA-1:cds;Parent=Msa0431310-mRNA-1
chr3_2 CDS 83387841 83387902 83387841 ID=Msa0431310-mRNA-1:cds;Parent=Msa0431310-mRNA-1
chr3_2 CDS 83387585 83387674 83387585 ID=Msa0431310-mRNA-1:cds;Parent=Msa0431310-mRNA-1
chr3_2 CDS 83387348 83387488 83387348 ID=Msa0431310-mRNA-1:cds;Parent=Msa0431310-mRNA-1
chr3_2 CDS 83387125 83387220 83387125 ID=Msa0431310-mRNA-1:cds;Parent=Msa0431310-mRNA-1
chr3_2 three_prime_UTR 83386791 83387124 83386791 ID=Msa0431310-mRNA-1:three_prime_utr;Parent=Msa0431310-mRNA-1
Gene Sequence

>Msa0431310

ATGGCCTTGTCCTCCACCACCACCACTACAATTTGCATTCCAAGTAACAACACTCCAAGCAAGCTAGGATTCTCAACTAATAACATTGTTTTTTCTGTAAAACAAGCGCGGAAACTACGTATCAGAAGCTCTAGTGAAAACTCTGCAGGTTCAACGGAGGTTGAGTCGGAGAGTTCCATTGAACTTCCAAAAGAATCATCTTCTTTAATTTCTGTTCTCAACGTCGAAAGAGCTCTCCGTGGCATACCTATTACAGATGCAGATCATTATGGTAGACTTGGCTTACCAAGAGGATGTCCATATGACATGGTGCCAATTGCTTATAATAACAAGGTTCGAGAATTGGAGAGTCAAGGTTTAGAGGAAGACATACTTAACAAGAAATTGGAACTTCTCAGAGAATCATACACTATCATGTCATCGCCGGATGAAAGAAGAATGTATGACTGGAGCTTGTCCAGAGAAGATAACACAGACACATACGTTTGGCCATTTGAGGTTGATGTTTCGGTACTTCAAGAAGGAGATCCTCCACCACAGGAACCTGAGGATGTAGGACCAACCAGACTGGTTGGATACTTTCTAGCGGGATGGATACTGCTAGCATTTGTGTTATCAATTGGACTAAACTTATAG

Protein sequence

>Msa0431310

MALSSTTTTTICIPSNNTPSKLGFSTNNIVFSVKQARKLRIRSSSENSAGSTEVESESSIELPKESSSLISVLNVERALRGIPITDADHYGRLGLPRGCPYDMVPIAYNNKVRELESQGLEEDILNKKLELLRESYTIMSSPDERRMYDWSLSREDNTDTYVWPFEVDVSVLQEGDPPPQEPEDVGPTRLVGYFLAGWILLAFVLSIGLNL*