Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772500 | AES94809.1 | 90.875 | 263 | 9 | 1 | 1 | 248 | 1 | 263 | 3.56e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772500 | sp|Q7Y0D4|TR164_ORYSJ | 69.118 | 204 | 47 | 1 | 61 | 248 | 59 | 262 | 5.43e-100 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772500 | G7K9G7 | 90.875 | 263 | 9 | 1 | 1 | 248 | 1 | 263 | 1.70e-165 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064550 | Msa0772500 | 0.815548 | 8.736454e-52 | -8.615850e-47 |
| Msa0646190 | Msa0772500 | 0.801347 | 9.398864e-49 | -8.615850e-47 |
| Msa0709660 | Msa0772500 | 0.802449 | 5.580516e-49 | -8.615850e-47 |
| Msa0715510 | Msa0772500 | -0.801447 | 8.967442e-49 | -8.615850e-47 |
| Msa0772500 | Msa0790640 | 0.810663 | 1.030673e-50 | -8.615850e-47 |
| Msa0772500 | Msa0798460 | 0.924368 | 7.731372e-90 | -8.615850e-47 |
| Msa0772500 | Msa0818550 | 0.809564 | 1.777837e-50 | -8.615850e-47 |
| Msa0772500 | Msa0964650 | 0.818022 | 2.434078e-52 | -8.615850e-47 |
| Msa0772500 | Msa1349810 | 0.800685 | 1.283191e-48 | -8.615850e-47 |
| Msa0772500 | Msa1354090 | 0.812226 | 4.715636e-51 | -8.615850e-47 |
| Msa0772500 | Msa1359890 | 0.800796 | 1.218238e-48 | -8.615850e-47 |
| Msa0772500 | Msa1375780 | 0.809492 | 1.842310e-50 | -8.615850e-47 |
| Msa0772500 | Msa1434660 | 0.807785 | 4.264926e-50 | -8.615850e-47 |
| Msa0772500 | Msa1466350 | 0.809821 | 1.565413e-50 | -8.615850e-47 |
| Msa0154270 | Msa0772500 | 0.802240 | 6.162475e-49 | -8.615850e-47 |
| Msa0183560 | Msa0772500 | 0.800593 | 1.339969e-48 | -8.615850e-47 |
| Msa0200840 | Msa0772500 | 0.805844 | 1.096877e-49 | -8.615850e-47 |
| Msa0212730 | Msa0772500 | 0.836229 | 1.057563e-56 | -8.615850e-47 |
| Msa0376340 | Msa0772500 | 0.811483 | 6.844336e-51 | -8.615850e-47 |
| Msa0378700 | Msa0772500 | 0.806440 | 8.216414e-50 | -8.615850e-47 |
| Msa0435010 | Msa0772500 | 0.809589 | 1.756047e-50 | -8.615850e-47 |
| Msa0437550 | Msa0772500 | 0.805649 | 1.205714e-49 | -8.615850e-47 |
| Msa0479100 | Msa0772500 | 0.822690 | 2.069990e-53 | -8.615850e-47 |
| Msa0260470 | Msa0772500 | 0.803097 | 4.102302e-49 | -8.615850e-47 |
| Msa0304110 | Msa0772500 | 0.806045 | 9.953645e-50 | -8.615850e-47 |
| Msa0341190 | Msa0772500 | 0.800312 | 1.529034e-48 | -8.615850e-47 |
| Msa0358290 | Msa0772500 | 0.845496 | 3.917441e-59 | -8.615850e-47 |
| Msa0516160 | Msa0772500 | 0.806358 | 8.549519e-50 | -8.615850e-47 |
| Msa0593810 | Msa0772500 | 0.812201 | 4.775694e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772500 | MtrunA17_Chr5g0403061 | 90.114 | 263 | 9 | 2 | 1 | 248 | 28 | 288 | 6.87e-165 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772500 | AT4G37200.1 | 58.868 | 265 | 88 | 3 | 1 | 248 | 1 | 261 | 5.64e-97 | 284 |
Find 73 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCTACTTTAGCAGCTT+TGG | 0.217157 | 5_2:-46866396 | Msa0772500:CDS |
| GTTATCTAACCATGACTTCT+TGG | 0.244316 | 5_2:+46864302 | None:intergenic |
| GTATTTGCTAGATTGGATTT+TGG | 0.258034 | 5_2:-46866365 | Msa0772500:CDS |
| AACAAATATCTTTGGTTGCT+TGG | 0.271563 | 5_2:+46866869 | None:intergenic |
| CGTTATGGTTTGGGTCTGTT+TGG | 0.277556 | 5_2:+46866702 | None:intergenic |
| GCTTCTACTTTAGCAGCTTT+GGG | 0.291905 | 5_2:-46866395 | Msa0772500:CDS |
| TAACAATTGCCATTGATATC+TGG | 0.292339 | 5_2:+46864161 | None:intergenic |
| TTTAGATCCTAATCTATAAC+AGG | 0.320141 | 5_2:+46864185 | None:intergenic |
| GAAGGCATGGTTGGAATCTA+TGG | 0.343193 | 5_2:+46866798 | None:intergenic |
| GTGTTCAAAACAAATATCTT+TGG | 0.351735 | 5_2:+46866861 | None:intergenic |
| GACGGTGGCGAGGAGGATAT+AGG | 0.369271 | 5_2:+46866750 | None:intergenic |
| GTACAAGCCTGTTATAGATT+AGG | 0.373717 | 5_2:-46864192 | Msa0772500:three_prime_UTR |
| CTTCATTCCCTTCTTTATCA+AGG | 0.396426 | 5_2:+46864471 | None:intergenic |
| GTTATGGTTTGGGTCTGTTT+GGG | 0.401130 | 5_2:+46866703 | None:intergenic |
| AGTTCAGCCGTTGATTCTAA+TGG | 0.408154 | 5_2:-46866464 | Msa0772500:CDS |
| CAGATTGGTGTGAAGTTTGT+AGG | 0.412120 | 5_2:-46864775 | Msa0772500:CDS |
| AATGAAGAGGGCAATGTAGT+AGG | 0.426207 | 5_2:-46864455 | Msa0772500:CDS |
| TTTGCTTTCCTTGATAAAGA+AGG | 0.436812 | 5_2:-46864479 | Msa0772500:CDS |
| TTGTTCCAGGCTCTTTCGAA+TGG | 0.436825 | 5_2:-46864824 | Msa0772500:intron |
| GTGCCTCATGCACGTGTTGT+GGG | 0.442631 | 5_2:-46864371 | Msa0772500:CDS |
| TGGGTCTGTTTGGGAAGCTA+AGG | 0.445015 | 5_2:+46866712 | None:intergenic |
| TACTAAATTCACGAAACTCT+TGG | 0.466102 | 5_2:-46864036 | Msa0772500:three_prime_UTR |
| TTTGAGAAGGCTGAAGATGA+AGG | 0.468505 | 5_2:+46866780 | None:intergenic |
| TTCTAGTGCTGAAGCAAGAA+AGG | 0.481673 | 5_2:-46864342 | Msa0772500:CDS |
| CTTGACGAGTTCGGTGTTGA+GGG | 0.483025 | 5_2:-46864512 | Msa0772500:CDS |
| ATATCTTTACTTGGCAATTG+AGG | 0.489525 | 5_2:+46866437 | None:intergenic |
| GAGTTTCGTGAATTTAGTAT+TGG | 0.491318 | 5_2:+46864040 | None:intergenic |
| TTTCTGTTGATATCTTTACT+TGG | 0.491430 | 5_2:+46866428 | None:intergenic |
| TGTTCCAGGCTCTTTCGAAT+GGG | 0.496536 | 5_2:-46864823 | Msa0772500:intron |
| CGTCTATCTTTAAATCCAAT+CGG | 0.500356 | 5_2:-46866824 | Msa0772500:CDS |
| ACGGTGGCGAGGAGGATATA+GGG | 0.502742 | 5_2:+46866751 | None:intergenic |
| GCTGAAGATGAAGGCATGGT+TGG | 0.505798 | 5_2:+46866789 | None:intergenic |
| TTGCTTTCCTTGATAAAGAA+GGG | 0.507919 | 5_2:-46864478 | Msa0772500:CDS |
| AAGATAGACGAGCCATCCAC+GGG | 0.512782 | 5_2:+46866837 | None:intergenic |
| AGTAGCAGTAAGCAGTAAGC+AGG | 0.516074 | 5_2:+46866899 | None:intergenic |
| GCTTGACGAGTTCGGTGTTG+AGG | 0.516085 | 5_2:-46864513 | Msa0772500:CDS |
| CTTATTATAGCGGTGGCAGT+TGG | 0.519094 | 5_2:-46866941 | None:intergenic |
| GAGCAAGAGCTTGACGAGTT+CGG | 0.523478 | 5_2:-46864521 | Msa0772500:CDS |
| TATCTTTGGTTGCTTGGTGA+AGG | 0.526818 | 5_2:+46866875 | None:intergenic |
| GGTGCCTCATGCACGTGTTG+TGG | 0.529739 | 5_2:-46864372 | Msa0772500:CDS |
| GATCTAAAACCAGATATCAA+TGG | 0.535624 | 5_2:-46864170 | Msa0772500:three_prime_UTR |
| TGGAATCTATGGAGACCGAT+TGG | 0.546327 | 5_2:+46866809 | None:intergenic |
| GGTTTACTGCTACTAGTGCT+AGG | 0.548648 | 5_2:+46866494 | None:intergenic |
| GAACTTTGTGATGTTGAATG+TGG | 0.557978 | 5_2:-46864558 | Msa0772500:CDS |
| AAAGATAGACGAGCCATCCA+CGG | 0.565433 | 5_2:+46866836 | None:intergenic |
| GTTGTTGATCCAAGAAGTCA+TGG | 0.566748 | 5_2:-46864311 | Msa0772500:CDS |
| TTCGTGAATTTAGTATTGGA+CGG | 0.577018 | 5_2:+46864044 | None:intergenic |
| ATCAACGGCTGAACTTGTCG+TGG | 0.587303 | 5_2:+46866472 | None:intergenic |
| AGATTGGTGTGAAGTTTGTA+GGG | 0.593332 | 5_2:-46864774 | Msa0772500:CDS |
| TCAACGGCTGAACTTGTCGT+GGG | 0.603162 | 5_2:+46866473 | None:intergenic |
| TCAGCCTCAGGAAATAAAAG+TGG | 0.604359 | 5_2:-46866525 | Msa0772500:intron |
| AGGAAGACCATTAGAATCAA+CGG | 0.609450 | 5_2:+46866457 | None:intergenic |
| GCATAGAACTCCACGACAGT+AGG | 0.611746 | 5_2:+46864797 | None:intergenic |
| AATCTGATGCGACGGTGGCG+AGG | 0.613273 | 5_2:+46866740 | None:intergenic |
| GATAAAGAAGGGAATGAAGA+GGG | 0.615664 | 5_2:-46864467 | Msa0772500:CDS |
| GCCTCAGGAAATAAAAGTGG+TGG | 0.615896 | 5_2:-46866522 | Msa0772500:CDS |
| GAATGGGAAGCCTACTGTCG+TGG | 0.616524 | 5_2:-46864807 | Msa0772500:CDS |
| AGGTGAGGAATCTGATGCGA+CGG | 0.621298 | 5_2:+46866732 | None:intergenic |
| GCTTGCTCGTGGTGAAACAT+CGG | 0.626472 | 5_2:-46864393 | Msa0772500:CDS |
| TGACCCACAACACGTGCATG+AGG | 0.633612 | 5_2:+46864368 | None:intergenic |
| TGATAAAGAAGGGAATGAAG+AGG | 0.637785 | 5_2:-46864468 | Msa0772500:CDS |
| TTATCAAGGAAAGCAAAGTG+TGG | 0.640685 | 5_2:+46864485 | None:intergenic |
| CTGATGCGACGGTGGCGAGG+AGG | 0.641176 | 5_2:+46866743 | None:intergenic |
| TGAGGAATCTGATGCGACGG+TGG | 0.643349 | 5_2:+46866735 | None:intergenic |
| TAACATTACCTCAACAACAC+CGG | 0.648113 | 5_2:-46866672 | Msa0772500:intron |
| TCGTGGAGTTCTATGCAGAT+TGG | 0.649863 | 5_2:-46864790 | Msa0772500:CDS |
| GAAGGCTGAAGATGAAGGCA+TGG | 0.673404 | 5_2:+46866785 | None:intergenic |
| AATGTAGACGCGCTTGCTCG+TGG | 0.674873 | 5_2:-46864404 | Msa0772500:CDS |
| CTGTTTGGGAAGCTAAGGTG+AGG | 0.675233 | 5_2:+46866717 | None:intergenic |
| GAATGTGGATAACACGAAGT+GGG | 0.697170 | 5_2:-46864543 | Msa0772500:CDS |
| TGAATGTGGATAACACGAAG+TGG | 0.714246 | 5_2:-46864544 | Msa0772500:CDS |
| GATAGACGAGCCATCCACGG+GGG | 0.736290 | 5_2:+46866839 | None:intergenic |
| AGATAGACGAGCCATCCACG+GGG | 0.746250 | 5_2:+46866838 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATAA+TGG | + | chr5_2:46864295-46864314 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+TGG | + | chr5_2:46865157-46865176 | None:intergenic | 0.0% |
| !! | TTGATAAAATAAAGTCAAAT+TGG | - | chr5_2:46864709-46864728 | Msa0772500:intron | 15.0% |
| !! | TATAAGGTGAAAATAATTTA+TGG | - | chr5_2:46864790-46864809 | Msa0772500:CDS | 15.0% |
| !!! | TTGATATAGTTTATGATTTT+TGG | - | chr5_2:46866281-46866300 | Msa0772500:intron | 15.0% |
| !!! | TAATGTTATCTTTTTCGTTA+TGG | + | chr5_2:46864233-46864252 | None:intergenic | 20.0% |
| !!! | TTTTTCTTATACTTCTATAC+TGG | + | chr5_2:46865006-46865025 | None:intergenic | 20.0% |
| !! | AAAAGTGAATAATCACTATA+AGG | + | chr5_2:46865509-46865528 | None:intergenic | 20.0% |
| !! | ATCTTAAATGGAAAAACTAA+TGG | - | chr5_2:46865554-46865573 | Msa0772500:intron | 20.0% |
| !! | GTAGATTAGAAACATATAAT+TGG | + | chr5_2:46865602-46865621 | None:intergenic | 20.0% |
| !! | TTGACAGAGTAAAATAATAA+TGG | - | chr5_2:46865664-46865683 | Msa0772500:intron | 20.0% |
| !! | AAAAAAAACCTCAAATTGTT+AGG | + | chr5_2:46865981-46866000 | None:intergenic | 20.0% |
| !!! | ATTAATTTTCCCTCAAAATA+AGG | + | chr5_2:46866241-46866260 | None:intergenic | 20.0% |
| !! | AATTACCTACACTTTATAAA+AGG | - | chr5_2:46866258-46866277 | Msa0772500:intron | 20.0% |
| ! | GTGTTCAAAACAAATATCTT+TGG | + | chr5_2:46864059-46864078 | None:intergenic | 25.0% |
| !!! | TATCTTTTTCGTTATGGTTT+GGG | + | chr5_2:46864227-46864246 | None:intergenic | 25.0% |
| !!! | TTATCTTTTTCGTTATGGTT+TGG | + | chr5_2:46864228-46864247 | None:intergenic | 25.0% |
| ! | TTTCTGTTGATATCTTTACT+TGG | + | chr5_2:46864492-46864511 | None:intergenic | 25.0% |
| ! | CATAAATCATGAGCAATAAA+CGG | + | chr5_2:46865118-46865137 | None:intergenic | 25.0% |
| !!! | TAGTGATTATTCACTTTTGA+AGG | - | chr5_2:46865511-46865530 | Msa0772500:intron | 25.0% |
| !!! | AGTGATTATTCACTTTTGAA+GGG | - | chr5_2:46865512-46865531 | Msa0772500:intron | 25.0% |
| ! | ACATATGAACTTAAAAAACC+AGG | + | chr5_2:46865628-46865647 | None:intergenic | 25.0% |
| !! | TCAAAATAAGGTATCAAAAG+AGG | + | chr5_2:46866229-46866248 | None:intergenic | 25.0% |
| !!! | TCTTTTGATACCTTATTTTG+AGG | - | chr5_2:46866228-46866247 | Msa0772500:intron | 25.0% |
| !!! | CTTTTGATACCTTATTTTGA+GGG | - | chr5_2:46866229-46866248 | Msa0772500:intron | 25.0% |
| !! | ATCAACCTTTTATAAAGTGT+AGG | + | chr5_2:46866266-46866285 | None:intergenic | 25.0% |
| ! | TTTAGATCCTAATCTATAAC+AGG | + | chr5_2:46866735-46866754 | None:intergenic | 25.0% |
| AACAAATATCTTTGGTTGCT+TGG | + | chr5_2:46864051-46864070 | None:intergenic | 30.0% | |
| CGTCTATCTTTAAATCCAAT+CGG | - | chr5_2:46864093-46864112 | Msa0772500:three_prime_UTR | 30.0% | |
| !! | TATAGGGTGAATTTTTGAGA+AGG | + | chr5_2:46864153-46864172 | None:intergenic | 30.0% |
| ATATCTTTACTTGGCAATTG+AGG | + | chr5_2:46864483-46864502 | None:intergenic | 30.0% | |
| !! | ACTTTTCGTATTTGCTAGAT+TGG | - | chr5_2:46864545-46864564 | Msa0772500:CDS | 30.0% |
| !! | GTATTTGCTAGATTGGATTT+TGG | - | chr5_2:46864552-46864571 | Msa0772500:CDS | 30.0% |
| ! | AAGAAGATCTTGAACTTGTT+TGG | - | chr5_2:46864629-46864648 | Msa0772500:intron | 30.0% |
| ! | CTTGAACTTGTTTGGATTAA+CGG | - | chr5_2:46864637-46864656 | Msa0772500:intron | 30.0% |
| CTGAAGGACTTATTGATATA+AGG | - | chr5_2:46864774-46864793 | Msa0772500:CDS | 30.0% | |
| CGTTTATTGCTCATGATTTA+TGG | - | chr5_2:46865116-46865135 | Msa0772500:intron | 30.0% | |
| CTCATGATTTATGGTTTAGT+GGG | - | chr5_2:46865125-46865144 | Msa0772500:intron | 30.0% | |
| TTCAAAAGATACGCTTAATC+AGG | - | chr5_2:46865410-46865429 | Msa0772500:intron | 30.0% | |
| TCAAAAGATACGCTTAATCA+GGG | - | chr5_2:46865411-46865430 | Msa0772500:intron | 30.0% | |
| ! | TGTTTCTGTCACTGAAAAAA+GGG | - | chr5_2:46865456-46865475 | Msa0772500:intron | 30.0% |
| AAAAAAGGGTCTTTCTTTGA+AGG | - | chr5_2:46865470-46865489 | Msa0772500:intron | 30.0% | |
| !! | GTGATTATTCACTTTTGAAG+GGG | - | chr5_2:46865513-46865532 | Msa0772500:intron | 30.0% |
| TGAAGAGTGACAATCTTAAA+TGG | - | chr5_2:46865542-46865561 | Msa0772500:intron | 30.0% | |
| GGAAAAACTAATGGTTTGAA+AGG | - | chr5_2:46865563-46865582 | Msa0772500:intron | 30.0% | |
| TGAAGAAGATAAAATGCAGT+TGG | - | chr5_2:46865734-46865753 | Msa0772500:intron | 30.0% | |
| GAAGAAGATAAAATGCAGTT+GGG | - | chr5_2:46865735-46865754 | Msa0772500:intron | 30.0% | |
| ! | CCAACTAATGTTCTAAATAG+GGG | + | chr5_2:46865938-46865957 | None:intergenic | 30.0% |
| ! | CCCAACTAATGTTCTAAATA+GGG | + | chr5_2:46865939-46865958 | None:intergenic | 30.0% |
| ! | CCCTATTTAGAACATTAGTT+GGG | - | chr5_2:46865936-46865955 | Msa0772500:intron | 30.0% |
| AACCTCAAATTGTTAGGTAT+CGG | + | chr5_2:46865975-46865994 | None:intergenic | 30.0% | |
| ! | TTCTGATAGTGTTTGTACTT+TGG | - | chr5_2:46866057-46866076 | Msa0772500:intron | 30.0% |
| !! | TAGTGTTTGTACTTTGGTTT+TGG | - | chr5_2:46866063-46866082 | Msa0772500:intron | 30.0% |
| ! | ACCATTTTACTTCTCAAAAC+AGG | - | chr5_2:46866328-46866347 | Msa0772500:intron | 30.0% |
| !!! | TCCTGTTTTGAGAAGTAAAA+TGG | + | chr5_2:46866332-46866351 | None:intergenic | 30.0% |
| TTTGCTTTCCTTGATAAAGA+AGG | - | chr5_2:46866438-46866457 | Msa0772500:CDS | 30.0% | |
| TTGCTTTCCTTGATAAAGAA+GGG | - | chr5_2:46866439-46866458 | Msa0772500:CDS | 30.0% | |
| ! | GATCTAAAACCAGATATCAA+TGG | - | chr5_2:46866747-46866766 | Msa0772500:CDS | 30.0% |
| TAACAATTGCCATTGATATC+TGG | + | chr5_2:46866759-46866778 | None:intergenic | 30.0% | |
| ! | TTCGTGAATTTAGTATTGGA+CGG | + | chr5_2:46866876-46866895 | None:intergenic | 30.0% |
| GAGTTTCGTGAATTTAGTAT+TGG | + | chr5_2:46866880-46866899 | None:intergenic | 30.0% | |
| TACTAAATTCACGAAACTCT+TGG | - | chr5_2:46866881-46866900 | Msa0772500:five_prime_UTR | 30.0% | |
| TAACATTACCTCAACAACAC+CGG | - | chr5_2:46864245-46864264 | Msa0772500:three_prime_UTR | 35.0% | |
| !!! | TTTTTTTACCGGTGTTGTTG+AGG | + | chr5_2:46864256-46864275 | None:intergenic | 35.0% |
| TAATGATCTTTATCAGCCTC+AGG | - | chr5_2:46864380-46864399 | Msa0772500:CDS | 35.0% | |
| AGGAAGACCATTAGAATCAA+CGG | + | chr5_2:46864463-46864482 | None:intergenic | 35.0% | |
| CTTCAAGATACCTGTTCATA+AGG | + | chr5_2:46864612-46864631 | None:intergenic | 35.0% | |
| ! | GTTTTACTAAGCTGTTCTGA+AGG | - | chr5_2:46864758-46864777 | Msa0772500:CDS | 35.0% |
| TCAGATAACCTAATCCAAAC+AGG | - | chr5_2:46864879-46864898 | Msa0772500:intron | 35.0% | |
| GCTCATGATTTATGGTTTAG+TGG | - | chr5_2:46865124-46865143 | Msa0772500:intron | 35.0% | |
| GAGCTTATAACTGTTGAGTA+TGG | + | chr5_2:46865379-46865398 | None:intergenic | 35.0% | |
| TTTCAGTGACAGAAACAGTT+AGG | + | chr5_2:46865453-46865472 | None:intergenic | 35.0% | |
| !! | CTGTTTCTGTCACTGAAAAA+AGG | - | chr5_2:46865455-46865474 | Msa0772500:intron | 35.0% |
| ! | TCTTTGAAGGCGTGATTTAT+TGG | - | chr5_2:46865483-46865502 | Msa0772500:intron | 35.0% |
| ! | ATGTTTCTAATCTACTCACC+TGG | - | chr5_2:46865607-46865626 | Msa0772500:intron | 35.0% |
| ATGGAAAGAGTCATAATGCA+TGG | - | chr5_2:46865683-46865702 | Msa0772500:intron | 35.0% | |
| ATGCATGGAATGATGAAAAG+AGG | - | chr5_2:46865698-46865717 | Msa0772500:intron | 35.0% | |
| TGCATGGAATGATGAAAAGA+GGG | - | chr5_2:46865699-46865718 | Msa0772500:intron | 35.0% | |
| ! | CAATGCTTTGTGGTTAGTTA+GGG | + | chr5_2:46865769-46865788 | None:intergenic | 35.0% |
| GTTACGACCTTAGAAGATTT+GGG | + | chr5_2:46865818-46865837 | None:intergenic | 35.0% | |
| AGTTACGACCTTAGAAGATT+TGG | + | chr5_2:46865819-46865838 | None:intergenic | 35.0% | |
| ATCCATGTCCTTCATATAAC+TGG | - | chr5_2:46865867-46865886 | Msa0772500:intron | 35.0% | |
| ! | AATGTTCTAAATAGGGGAGT+TGG | + | chr5_2:46865932-46865951 | None:intergenic | 35.0% |
| ! | CCCCTATTTAGAACATTAGT+TGG | - | chr5_2:46865935-46865954 | Msa0772500:intron | 35.0% |
| ! | GCCCAACTAATGTTCTAAAT+AGG | + | chr5_2:46865940-46865959 | None:intergenic | 35.0% |
| TTAGAACATTAGTTGGGCTT+AGG | - | chr5_2:46865942-46865961 | Msa0772500:intron | 35.0% | |
| !!! | AATTGTTAGGTATCGGGTTT+TGG | + | chr5_2:46865968-46865987 | None:intergenic | 35.0% |
| ACCTCAAATTGTTAGGTATC+GGG | + | chr5_2:46865974-46865993 | None:intergenic | 35.0% | |
| TCTTCCTGAAGAACAATTTG+AGG | - | chr5_2:46866002-46866021 | Msa0772500:intron | 35.0% | |
| ACAACCTCAAATTGTTCTTC+AGG | + | chr5_2:46866009-46866028 | None:intergenic | 35.0% | |
| ! | TTTTGGATGTTTCTTGTTCC+AGG | - | chr5_2:46866080-46866099 | Msa0772500:intron | 35.0% |
| AGATTGGTGTGAAGTTTGTA+GGG | - | chr5_2:46866143-46866162 | Msa0772500:intron | 35.0% | |
| ! | TGCTCTATTTTGTAGACATC+AGG | + | chr5_2:46866177-46866196 | None:intergenic | 35.0% |
| GAACTTTGTGATGTTGAATG+TGG | - | chr5_2:46866359-46866378 | Msa0772500:intron | 35.0% | |
| TTATCAAGGAAAGCAAAGTG+TGG | + | chr5_2:46866435-46866454 | None:intergenic | 35.0% | |
| CTTCATTCCCTTCTTTATCA+AGG | + | chr5_2:46866449-46866468 | None:intergenic | 35.0% | |
| TGATAAAGAAGGGAATGAAG+AGG | - | chr5_2:46866449-46866468 | Msa0772500:CDS | 35.0% | |
| GATAAAGAAGGGAATGAAGA+GGG | - | chr5_2:46866450-46866469 | Msa0772500:CDS | 35.0% | |
| !! | TTTTCAAGCAAGTACTGTCT+TGG | + | chr5_2:46866495-46866514 | None:intergenic | 35.0% |
| GTTATCTAACCATGACTTCT+TGG | + | chr5_2:46866618-46866637 | None:intergenic | 35.0% | |
| GTACAAGCCTGTTATAGATT+AGG | - | chr5_2:46866725-46866744 | Msa0772500:CDS | 35.0% | |
| ! | TATCTTTGGTTGCTTGGTGA+AGG | + | chr5_2:46864045-46864064 | None:intergenic | 40.0% |
| TTTGAGAAGGCTGAAGATGA+AGG | + | chr5_2:46864140-46864159 | None:intergenic | 40.0% | |
| ! | GTTATGGTTTGGGTCTGTTT+GGG | + | chr5_2:46864217-46864236 | None:intergenic | 40.0% |
| TCAGCCTCAGGAAATAAAAG+TGG | - | chr5_2:46864392-46864411 | Msa0772500:CDS | 40.0% | |
| !! | ACCACCACTTTTATTTCCTG+AGG | + | chr5_2:46864399-46864418 | None:intergenic | 40.0% |
| !! | AGTTCAGCCGTTGATTCTAA+TGG | - | chr5_2:46864453-46864472 | Msa0772500:CDS | 40.0% |
| TGCTTCTACTTTAGCAGCTT+TGG | - | chr5_2:46864521-46864540 | Msa0772500:CDS | 40.0% | |
| GCTTCTACTTTAGCAGCTTT+GGG | - | chr5_2:46864522-46864541 | Msa0772500:CDS | 40.0% | |
| TGTTGCATTGCCTTATGAAC+AGG | - | chr5_2:46864599-46864618 | Msa0772500:intron | 40.0% | |
| ACAAGCACTAGTGCAATTGT+GGG | + | chr5_2:46864845-46864864 | None:intergenic | 40.0% | |
| ATTGACAGCCTGTTTGGATT+AGG | + | chr5_2:46864890-46864909 | None:intergenic | 40.0% | |
| AATGAGCTGAAGACAGCTTA+TGG | - | chr5_2:46864907-46864926 | Msa0772500:intron | 40.0% | |
| ATTCCCTGTGATACAGTTCA+GGG | + | chr5_2:46865220-46865239 | None:intergenic | 40.0% | |
| TATTCCCTGTGATACAGTTC+AGG | + | chr5_2:46865221-46865240 | None:intergenic | 40.0% | |
| ! | TGTTTGGCCCAATTGTTGTT+GGG | + | chr5_2:46865271-46865290 | None:intergenic | 40.0% |
| AACAATTGGGCCAAACACAA+GGG | - | chr5_2:46865274-46865293 | Msa0772500:intron | 40.0% | |
| ATACACAGAAGAGAGGAAAG+GGG | + | chr5_2:46865349-46865368 | None:intergenic | 40.0% | |
| CATACACAGAAGAGAGGAAA+GGG | + | chr5_2:46865350-46865369 | None:intergenic | 40.0% | |
| ACATACACAGAAGAGAGGAA+AGG | + | chr5_2:46865351-46865370 | None:intergenic | 40.0% | |
| CTCATACATACACAGAAGAG+AGG | + | chr5_2:46865356-46865375 | None:intergenic | 40.0% | |
| AAGATACGCTTAATCAGGGT+TGG | - | chr5_2:46865415-46865434 | Msa0772500:intron | 40.0% | |
| ! | GCAATGCTTTGTGGTTAGTT+AGG | + | chr5_2:46865770-46865789 | None:intergenic | 40.0% |
| AGAGAAAGTCATTCCTCTGA+AGG | + | chr5_2:46865794-46865813 | None:intergenic | 40.0% | |
| TTCTCTGCCCAAATCTTCTA+AGG | - | chr5_2:46865808-46865827 | Msa0772500:intron | 40.0% | |
| AGGACATGGATAGCAATAGA+GGG | + | chr5_2:46865858-46865877 | None:intergenic | 40.0% | |
| AAGGACATGGATAGCAATAG+AGG | + | chr5_2:46865859-46865878 | None:intergenic | 40.0% | |
| TGCCAGTTATATGAAGGACA+TGG | + | chr5_2:46865872-46865891 | None:intergenic | 40.0% | |
| ACCCGATACCTAACAATTTG+AGG | - | chr5_2:46865970-46865989 | Msa0772500:intron | 40.0% | |
| CAGATTGGTGTGAAGTTTGT+AGG | - | chr5_2:46866142-46866161 | Msa0772500:intron | 40.0% | |
| TGAATGTGGATAACACGAAG+TGG | - | chr5_2:46866373-46866392 | Msa0772500:CDS | 40.0% | |
| GAATGTGGATAACACGAAGT+GGG | - | chr5_2:46866374-46866393 | Msa0772500:CDS | 40.0% | |
| AATGAAGAGGGCAATGTAGT+AGG | - | chr5_2:46866462-46866481 | Msa0772500:CDS | 40.0% | |
| ! | TTCTAGTGCTGAAGCAAGAA+AGG | - | chr5_2:46866575-46866594 | Msa0772500:intron | 40.0% |
| GTTGTTGATCCAAGAAGTCA+TGG | - | chr5_2:46866606-46866625 | Msa0772500:intron | 40.0% | |
| AGTAGCAGTAAGCAGTAAGC+AGG | + | chr5_2:46864021-46864040 | None:intergenic | 45.0% | |
| !!! | ATTTGTTTTGAACACCCCCG+TGG | - | chr5_2:46864064-46864083 | Msa0772500:three_prime_UTR | 45.0% |
| AAAGATAGACGAGCCATCCA+CGG | + | chr5_2:46864084-46864103 | None:intergenic | 45.0% | |
| TGGAATCTATGGAGACCGAT+TGG | + | chr5_2:46864111-46864130 | None:intergenic | 45.0% | |
| ! | GAAGGCATGGTTGGAATCTA+TGG | + | chr5_2:46864122-46864141 | None:intergenic | 45.0% |
| ! | CGTTATGGTTTGGGTCTGTT+TGG | + | chr5_2:46864218-46864237 | None:intergenic | 45.0% |
| GCCTCAGGAAATAAAAGTGG+TGG | - | chr5_2:46864395-46864414 | Msa0772500:CDS | 45.0% | |
| GGTTTACTGCTACTAGTGCT+AGG | + | chr5_2:46864426-46864445 | None:intergenic | 45.0% | |
| !! | TGCAATTGTGGGAGTGCTTA+TGG | + | chr5_2:46864834-46864853 | None:intergenic | 45.0% |
| CACAAGCACTAGTGCAATTG+TGG | + | chr5_2:46864846-46864865 | None:intergenic | 45.0% | |
| CTACCTCTGCGACTATAGAA+CGG | - | chr5_2:46865084-46865103 | Msa0772500:intron | 45.0% | |
| ATACCCCTGAACTGTATCAC+AGG | - | chr5_2:46865213-46865232 | Msa0772500:intron | 45.0% | |
| TACCCCTGAACTGTATCACA+GGG | - | chr5_2:46865214-46865233 | Msa0772500:intron | 45.0% | |
| TTCCCTGTGATACAGTTCAG+GGG | + | chr5_2:46865219-46865238 | None:intergenic | 45.0% | |
| ! | GTTTGGCCCAATTGTTGTTG+GGG | + | chr5_2:46865270-46865289 | None:intergenic | 45.0% |
| GTGTTTGGCCCAATTGTTGT+TGG | + | chr5_2:46865272-46865291 | None:intergenic | 45.0% | |
| CAACAATTGGGCCAAACACA+AGG | - | chr5_2:46865273-46865292 | Msa0772500:intron | 45.0% | |
| TCTGAAGGAGCAATGCTTTG+TGG | + | chr5_2:46865779-46865798 | None:intergenic | 45.0% | |
| !! | ACAAAGCATTGCTCCTTCAG+AGG | - | chr5_2:46865778-46865797 | Msa0772500:intron | 45.0% |
| GGACATGGATAGCAATAGAG+GGG | + | chr5_2:46865857-46865876 | None:intergenic | 45.0% | |
| GGGGAATGCCAGTTATATGA+AGG | + | chr5_2:46865878-46865897 | None:intergenic | 45.0% | |
| !! | ACGTGGCTAGTTTGTTAGAG+GGG | + | chr5_2:46865897-46865916 | None:intergenic | 45.0% |
| !! | CACGTGGCTAGTTTGTTAGA+GGG | + | chr5_2:46865898-46865917 | None:intergenic | 45.0% |
| !! | TCACGTGGCTAGTTTGTTAG+AGG | + | chr5_2:46865899-46865918 | None:intergenic | 45.0% |
| GTTGGTTACATTTGCTCACG+TGG | + | chr5_2:46865914-46865933 | None:intergenic | 45.0% | |
| TTGTTCCAGGCTCTTTCGAA+TGG | - | chr5_2:46866093-46866112 | Msa0772500:intron | 45.0% | |
| TGTTCCAGGCTCTTTCGAAT+GGG | - | chr5_2:46866094-46866113 | Msa0772500:intron | 45.0% | |
| TCGTGGAGTTCTATGCAGAT+TGG | - | chr5_2:46866127-46866146 | Msa0772500:intron | 45.0% | |
| !!! | TTTTTTTTTTATTTTTTTAC+CGG | + | chr5_2:46864267-46864286 | None:intergenic | 5.0% |
| !! | TATATATATATATAATACTT+CGG | - | chr5_2:46865176-46865195 | Msa0772500:intron | 5.0% |
| AAGATAGACGAGCCATCCAC+GGG | + | chr5_2:46864083-46864102 | None:intergenic | 50.0% | |
| ! | GCTGAAGATGAAGGCATGGT+TGG | + | chr5_2:46864131-46864150 | None:intergenic | 50.0% |
| GAAGGCTGAAGATGAAGGCA+TGG | + | chr5_2:46864135-46864154 | None:intergenic | 50.0% | |
| AGGTGAGGAATCTGATGCGA+CGG | + | chr5_2:46864188-46864207 | None:intergenic | 50.0% | |
| CTGTTTGGGAAGCTAAGGTG+AGG | + | chr5_2:46864203-46864222 | None:intergenic | 50.0% | |
| TGGGTCTGTTTGGGAAGCTA+AGG | + | chr5_2:46864208-46864227 | None:intergenic | 50.0% | |
| TCAACGGCTGAACTTGTCGT+GGG | + | chr5_2:46864447-46864466 | None:intergenic | 50.0% | |
| ATCAACGGCTGAACTTGTCG+TGG | + | chr5_2:46864448-46864467 | None:intergenic | 50.0% | |
| CAGCTCATTGACAGCCTGTT+TGG | + | chr5_2:46864896-46864915 | None:intergenic | 50.0% | |
| TGTTCACGCAGTTCGTTCAC+TGG | - | chr5_2:46865058-46865077 | Msa0772500:intron | 50.0% | |
| CGTTCTATAGTCGCAGAGGT+AGG | + | chr5_2:46865086-46865105 | None:intergenic | 50.0% | |
| TAGCCGTTCTATAGTCGCAG+AGG | + | chr5_2:46865090-46865109 | None:intergenic | 50.0% | |
| TCGCCACCCCAACAACAATT+GGG | - | chr5_2:46865261-46865280 | Msa0772500:intron | 50.0% | |
| GCATAGAACTCCACGACAGT+AGG | + | chr5_2:46866123-46866142 | None:intergenic | 50.0% | |
| GAGCAAGAGCTTGACGAGTT+CGG | - | chr5_2:46866396-46866415 | Msa0772500:CDS | 50.0% | |
| !! | CTTGACGAGTTCGGTGTTGA+GGG | - | chr5_2:46866405-46866424 | Msa0772500:CDS | 50.0% |
| GCTTGCTCGTGGTGAAACAT+CGG | - | chr5_2:46866524-46866543 | Msa0772500:CDS | 50.0% | |
| !! | GTTTTGAACACCCCCGTGGA+TGG | - | chr5_2:46864068-46864087 | Msa0772500:three_prime_UTR | 55.0% |
| AGATAGACGAGCCATCCACG+GGG | + | chr5_2:46864082-46864101 | None:intergenic | 55.0% | |
| ACGGTGGCGAGGAGGATATA+GGG | + | chr5_2:46864169-46864188 | None:intergenic | 55.0% | |
| TGAGGAATCTGATGCGACGG+TGG | + | chr5_2:46864185-46864204 | None:intergenic | 55.0% | |
| ! | TTGTTGTTGGGGTGGCGACT+GGG | + | chr5_2:46865259-46865278 | None:intergenic | 55.0% |
| ! | ATTGTTGTTGGGGTGGCGAC+TGG | + | chr5_2:46865260-46865279 | None:intergenic | 55.0% |
| GTCGCCACCCCAACAACAAT+TGG | - | chr5_2:46865260-46865279 | Msa0772500:intron | 55.0% | |
| ! | TGGCCCAATTGTTGTTGGGG+TGG | + | chr5_2:46865267-46865286 | None:intergenic | 55.0% |
| ATTGGGCCAAACACAAGGGC+AGG | - | chr5_2:46865278-46865297 | Msa0772500:intron | 55.0% | |
| TTGGGCCAAACACAAGGGCA+GGG | - | chr5_2:46865279-46865298 | Msa0772500:intron | 55.0% | |
| CACAGAAGAGAGGAAAGGGG+CGG | + | chr5_2:46865346-46865365 | None:intergenic | 55.0% | |
| GCTTCCCATTCGAAAGAGCC+TGG | + | chr5_2:46866101-46866120 | None:intergenic | 55.0% | |
| GAATGGGAAGCCTACTGTCG+TGG | - | chr5_2:46866110-46866129 | Msa0772500:intron | 55.0% | |
| !! | GCTTGACGAGTTCGGTGTTG+AGG | - | chr5_2:46866404-46866423 | Msa0772500:CDS | 55.0% |
| AATGTAGACGCGCTTGCTCG+TGG | - | chr5_2:46866513-46866532 | Msa0772500:CDS | 55.0% | |
| GTGCCTCATGCACGTGTTGT+GGG | - | chr5_2:46866546-46866565 | Msa0772500:intron | 55.0% | |
| TGACCCACAACACGTGCATG+AGG | + | chr5_2:46866552-46866571 | None:intergenic | 55.0% | |
| GATAGACGAGCCATCCACGG+GGG | + | chr5_2:46864081-46864100 | None:intergenic | 60.0% | |
| GACGGTGGCGAGGAGGATAT+AGG | + | chr5_2:46864170-46864189 | None:intergenic | 60.0% | |
| AATCTGATGCGACGGTGGCG+AGG | + | chr5_2:46864180-46864199 | None:intergenic | 60.0% | |
| TGTTGTTGGGGTGGCGACTG+GGG | + | chr5_2:46865258-46865277 | None:intergenic | 60.0% | |
| TGGGCCAAACACAAGGGCAG+GGG | - | chr5_2:46865280-46865299 | Msa0772500:intron | 60.0% | |
| ACCACCCCTGCCCTTGTGTT+TGG | + | chr5_2:46865287-46865306 | None:intergenic | 60.0% | |
| AAACACAAGGGCAGGGGTGG+TGG | - | chr5_2:46865286-46865305 | Msa0772500:intron | 60.0% | |
| AACACAAGGGCAGGGGTGGT+GGG | - | chr5_2:46865287-46865306 | Msa0772500:intron | 60.0% | |
| AGAGAGGAAAGGGGCGGAGA+AGG | + | chr5_2:46865340-46865359 | None:intergenic | 60.0% | |
| GGTGCCTCATGCACGTGTTG+TGG | - | chr5_2:46866545-46866564 | Msa0772500:intron | 60.0% | |
| TTGTTGGGGTGGCGACTGGG+GGG | + | chr5_2:46865256-46865275 | None:intergenic | 65.0% | |
| GTTGTTGGGGTGGCGACTGG+GGG | + | chr5_2:46865257-46865276 | None:intergenic | 65.0% | |
| GCCAAACACAAGGGCAGGGG+TGG | - | chr5_2:46865283-46865302 | Msa0772500:intron | 65.0% | |
| CTGATGCGACGGTGGCGAGG+AGG | + | chr5_2:46864177-46864196 | None:intergenic | 70.0% | |
| ! | TGGCGACTGGGGGGTGCAGG+GGG | + | chr5_2:46865247-46865266 | None:intergenic | 75.0% |
| ! | GTGGCGACTGGGGGGTGCAG+GGG | + | chr5_2:46865248-46865267 | None:intergenic | 75.0% |
| ! | GGTGGCGACTGGGGGGTGCA+GGG | + | chr5_2:46865249-46865268 | None:intergenic | 75.0% |
| !! | GGGTGGCGACTGGGGGGTGC+AGG | + | chr5_2:46865250-46865269 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46863991 | 46866948 | 46863991 | ID=Msa0772500;Name=Msa0772500 |
| chr5_2 | mRNA | 46863991 | 46866948 | 46863991 | ID=Msa0772500-mRNA-1;Parent=Msa0772500;Name=Msa0772500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=96|0.66|0.75|1|0.66|0.75|4|316|248 |
| chr5_2 | exon | 46863991 | 46864589 | 46863991 | ID=Msa0772500-mRNA-1:exon:14026;Parent=Msa0772500-mRNA-1 |
| chr5_2 | exon | 46864734 | 46864837 | 46864734 | ID=Msa0772500-mRNA-1:exon:14025;Parent=Msa0772500-mRNA-1 |
| chr5_2 | exon | 46866364 | 46866543 | 46866364 | ID=Msa0772500-mRNA-1:exon:14024;Parent=Msa0772500-mRNA-1 |
| chr5_2 | exon | 46866673 | 46866948 | 46866673 | ID=Msa0772500-mRNA-1:exon:14023;Parent=Msa0772500-mRNA-1 |
| chr5_2 | five_prime_UTR | 46866853 | 46866948 | 46866853 | ID=Msa0772500-mRNA-1:five_prime_utr;Parent=Msa0772500-mRNA-1 |
| chr5_2 | CDS | 46866673 | 46866852 | 46866673 | ID=Msa0772500-mRNA-1:cds;Parent=Msa0772500-mRNA-1 |
| chr5_2 | CDS | 46866364 | 46866543 | 46866364 | ID=Msa0772500-mRNA-1:cds;Parent=Msa0772500-mRNA-1 |
| chr5_2 | CDS | 46864734 | 46864837 | 46864734 | ID=Msa0772500-mRNA-1:cds;Parent=Msa0772500-mRNA-1 |
| chr5_2 | CDS | 46864307 | 46864589 | 46864307 | ID=Msa0772500-mRNA-1:cds;Parent=Msa0772500-mRNA-1 |
| chr5_2 | three_prime_UTR | 46863991 | 46864306 | 46863991 | ID=Msa0772500-mRNA-1:three_prime_utr;Parent=Msa0772500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
