AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0593810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0593810 MtrunA17_Chr4g0012061 97.475 713 18 0 1 713 1 713 0.0 1419
Msa0593810 MtrunA17_Chr7g0230671 77.684 708 149 3 7 713 2 701 0.0 1093
Msa0593810 MtrunA17_Chr6g0465161 41.273 550 294 8 101 638 78 610 1.32e-139 426
Msa0593810 MtrunA17_Chr1g0169361 42.457 464 258 5 100 560 132 589 8.28e-130 403
Msa0593810 MtrunA17_Chr1g0148121 35.437 618 367 12 64 672 37 631 2.67e-126 390
Msa0593810 MtrunA17_Chr3g0136721 36.111 576 314 9 100 641 90 645 2.86e-120 376
Msa0593810 MtrunA17_Chr1g0199921 35.516 504 290 10 101 578 139 633 6.49e-88 293
Msa0593810 MtrunA17_Chr3g0129101 33.775 453 248 10 143 555 191 631 1.29e-72 250
Msa0593810 MtrunA17_Chr8g0382921 32.211 475 270 10 121 555 160 622 1.48e-71 247
Msa0593810 MtrunA17_Chr3g0120791 34.872 390 241 5 148 530 197 580 1.61e-68 238
Msa0593810 MtrunA17_Chr5g0428451 25.381 394 261 5 155 518 128 518 6.36e-37 145
Msa0593810 MtrunA17_Chr5g0433911 33.333 282 166 8 147 414 52 325 1.89e-35 141
Msa0593810 MtrunA17_Chr1g0147481 31.930 285 166 6 166 432 138 412 9.63e-35 142
Msa0593810 MtrunA17_Chr4g0057941 26.768 396 256 12 136 515 59 436 1.70e-32 131
Msa0593810 MtrunA17_Chr8g0360981 25.917 409 263 7 142 520 199 597 1.11e-28 122
Msa0593810 MtrunA17_Chr3g0113361 28.125 288 186 6 139 408 74 358 7.53e-28 118
Msa0593810 MtrunA17_Chr2g0281061 27.090 299 185 6 161 434 224 514 3.88e-22 101
Msa0593810 MtrunA17_Chr4g0048521 24.190 401 263 9 150 518 213 604 4.71e-22 101
Msa0593810 MtrunA17_Chr1g0193751 29.110 292 174 9 167 443 242 515 4.97e-21 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0593810 AT1G79600.1 72.896 701 181 1 22 713 8 708 0.0 1041
Msa0593810 AT1G71810.1 43.053 511 271 5 110 610 78 578 2.15e-139 425
Msa0593810 AT3G24190.1 43.319 464 254 6 100 560 140 597 3.80e-131 407
Msa0593810 AT4G31390.1 40.412 485 282 3 101 581 113 594 3.31e-126 391
Msa0593810 AT5G24970.3 38.545 550 281 9 101 605 93 630 7.56e-121 378
Msa0593810 AT5G24970.2 38.545 550 281 9 101 605 132 669 3.68e-120 377
Msa0593810 AT4G31390.2 39.175 485 263 4 101 581 113 569 3.53e-117 367
Msa0593810 AT5G24970.1 38.000 550 281 10 101 605 93 627 2.01e-116 366
Msa0593810 AT4G31390.3 41.709 398 228 2 185 581 1 395 1.36e-109 341
Msa0593810 AT2G39190.2 33.578 545 302 13 100 595 145 678 6.44e-85 285
Msa0593810 AT3G07700.1 34.586 399 254 4 137 530 171 567 1.33e-70 244
Msa0593810 AT3G07700.2 34.586 399 254 4 137 530 171 567 1.33e-70 244
Msa0593810 AT3G07700.4 34.586 399 254 4 137 530 171 567 1.33e-70 244
Msa0593810 AT5G64940.1 33.480 454 256 9 140 555 203 648 2.02e-69 242
Msa0593810 AT5G64940.2 33.480 454 256 9 140 555 203 648 2.02e-69 242
Msa0593810 AT3G07700.3 33.100 429 249 6 137 530 171 596 5.87e-68 237
Msa0593810 AT5G05200.1 26.010 396 256 5 155 518 129 519 3.44e-39 152
Msa0593810 AT4G24810.4 27.848 316 201 7 136 436 13 316 5.49e-37 141
Msa0593810 AT4G24810.5 29.054 296 183 7 136 416 13 296 1.19e-36 140
Msa0593810 AT4G24810.6 24.709 429 266 10 136 531 13 417 2.91e-36 142
Msa0593810 AT4G24810.1 24.709 429 266 10 136 531 13 417 2.91e-36 142
Msa0593810 AT4G24810.2 24.709 429 266 10 136 531 56 460 6.53e-36 142
Msa0593810 AT4G24810.3 24.541 436 265 11 136 531 13 424 2.90e-34 136
Msa0593810 AT5G24810.1 32.667 300 167 9 136 417 89 371 3.93e-34 140
Msa0593810 AT2G39190.1 37.788 217 129 4 100 313 145 358 1.24e-33 133
Msa0593810 AT1G65950.2 32.411 253 163 4 166 414 113 361 3.31e-33 134
Msa0593810 AT5G50330.1 28.527 319 201 9 136 439 56 362 1.45e-32 132
Msa0593810 AT1G65950.1 32.411 253 163 4 166 414 113 361 1.47e-32 133
Msa0593810 AT5G24810.2 29.909 331 166 10 136 417 89 402 2.80e-29 125
Msa0593810 AT2G40090.1 29.373 303 189 9 152 434 89 386 3.87e-28 119
Msa0593810 AT5G50330.2 26.646 319 191 10 136 439 56 346 1.58e-26 114
Msa0593810 AT1G11390.1 25.000 404 257 10 149 518 207 598 1.90e-24 108
Msa0593810 AT1G61640.1 24.121 398 253 9 155 518 213 595 1.18e-23 106
Msa0593810 AT1G61640.3 26.774 310 186 7 155 434 213 511 1.56e-23 106
Msa0593810 AT4G01660.1 27.491 291 184 9 167 445 240 515 5.08e-19 92.0
Msa0593810 AT1G61640.2 27.317 205 126 4 155 344 213 409 7.96e-15 78.2

Find 176 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCAGATTGTGTTTAATT+TGG 0.146085 4_2:-20362194 Msa0593810:CDS
TGCAATTTCAAGGATCATTT+TGG 0.173798 4_2:-20356470 Msa0593810:three_prime_UTR
TTGTATCAATATCCATTTAA+TGG 0.197786 4_2:-20359011 Msa0593810:intron
CAACTTGTTGCTTCAAGATA+TGG 0.207079 4_2:-20362868 Msa0593810:CDS
GAAGCGAGATTTGCAATAAT+TGG 0.217043 4_2:-20359224 Msa0593810:CDS
TGCAGCAAGCACCTTAAAAT+TGG 0.225494 4_2:+20358610 None:intergenic
CAACTTGCATTTGGCCATTT+GGG 0.238120 4_2:-20355975 Msa0593810:three_prime_UTR
TAGTTTATACTTGAAATTCT+AGG 0.239920 4_2:-20356701 Msa0593810:three_prime_UTR
TCAACTTGCATTTGGCCATT+TGG 0.249742 4_2:-20355976 Msa0593810:three_prime_UTR
TTCTACCTCATTAGAGGTTT+AGG 0.250334 4_2:-20360294 Msa0593810:CDS
GAATGCATTGAGAGGGAATT+AGG 0.251683 4_2:-20360471 Msa0593810:CDS
ATTGCAAATCTCGCTTCTTC+TGG 0.262758 4_2:+20359230 None:intergenic
GTGTTTAATTTGGGTTCATT+TGG 0.267830 4_2:-20362184 Msa0593810:CDS
TTTCAGATTGTGTTTAATTT+GGG 0.276250 4_2:-20362193 Msa0593810:CDS
CAAAAGTAATTCAAACTTCT+AGG 0.280790 4_2:+20356820 None:intergenic
TCTACCTCATTAGAGGTTTA+GGG 0.280854 4_2:-20360293 Msa0593810:CDS
CATACTATGCGTTGATATTA+AGG 0.284829 4_2:-20358673 Msa0593810:CDS
TTAATTGACAAAATAGAGTT+TGG 0.287906 4_2:+20355917 None:intergenic
ATGCTCTTGATTTCTTATCT+AGG 0.293725 4_2:-20359148 Msa0593810:CDS
GTAAGAATTTGCTTAATTTA+CGG 0.296453 4_2:+20355883 None:intergenic
TCATAAAATTGAGAGATAAT+TGG 0.300683 4_2:+20363240 None:intergenic
CCCATTTCTCCATGGATTCA+TGG 0.303060 4_2:-20363138 Msa0593810:CDS
AACATTATCTCACCATTAAA+TGG 0.304241 4_2:+20358999 None:intergenic
CGCTTTCTTATGCAATTACT+TGG 0.319801 4_2:-20356916 Msa0593810:CDS
TCCTCATCCTGGTAATCTTT+TGG 0.321004 4_2:-20359306 Msa0593810:CDS
CAACCTGAGGCCCGTAAACT+TGG 0.330945 4_2:-20356979 Msa0593810:CDS
GCCATGAATCCATGGAGAAA+TGG 0.337735 4_2:+20363137 None:intergenic
ATTAAGGTCTCTCACTGTTC+TGG 0.337948 4_2:-20358657 Msa0593810:CDS
TTGGACTTCTACCTCATTAG+AGG 0.338286 4_2:-20360300 Msa0593810:CDS
GCTTGAAAACCTTCTAGTTC+AGG 0.339166 4_2:-20358135 Msa0593810:CDS
CCGATAGCTGCTGCTAGTTT+AGG 0.342246 4_2:-20360408 Msa0593810:CDS
TGTTTAATTTGGGTTCATTT+GGG 0.356535 4_2:-20362183 Msa0593810:CDS
GAGTTGCTGATCAGAATAAA+AGG 0.357382 4_2:-20362132 Msa0593810:CDS
GTCCCTCTGTAGGTATTTGT+AGG 0.371833 4_2:+20356510 None:intergenic
GCATCTCTTAGATATGGATT+TGG 0.372745 4_2:+20358551 None:intergenic
TTGAGGAACCTTGTCTTCAA+TGG 0.379397 4_2:-20357939 Msa0593810:CDS
GATACATTCCTTCAATTTCA+AGG 0.380243 4_2:-20356420 Msa0593810:three_prime_UTR
AACAGAAACATGTGTATGTA+AGG 0.384929 4_2:+20356073 None:intergenic
TACTCAGATGGACAAATATC+AGG 0.388127 4_2:+20362028 None:intergenic
ATCAGAGCATCTCTTAGATA+TGG 0.388348 4_2:+20358545 None:intergenic
ACGAAACTGTGAATTCAATA+AGG 0.388723 4_2:+20363059 None:intergenic
GAGATCAAGTGATTAGGATA+TGG 0.389231 4_2:-20357857 Msa0593810:CDS
TTTCGTAGTGCAGGAACAAT+TGG 0.389400 4_2:+20359110 None:intergenic
AAGACGATTGTGGACGGTCT+CGG 0.394059 4_2:-20359041 Msa0593810:CDS
ATATGGTTCTAAACCCTTCA+AGG 0.397792 4_2:-20362851 Msa0593810:intron
CATTCAAAGGCGTCCTCGTC+AGG 0.401484 4_2:+20360489 None:intergenic
GAAACTGAACTTTGTGATGA+TGG 0.402520 4_2:+20363015 None:intergenic
GCCTTAAGGGAACCATCTTT+AGG 0.402827 4_2:+20362979 None:intergenic
TTCACAGTTTCGTGCTGCTT+TGG 0.406279 4_2:-20363049 Msa0593810:CDS
TGGAAGTGCAAGAGCCTTAA+GGG 0.410212 4_2:+20362966 None:intergenic
TGATGAGGTGAGATTTGAAA+TGG 0.422742 4_2:+20363107 None:intergenic
TGCTCTTGATTTCTTATCTA+GGG 0.422756 4_2:-20359147 Msa0593810:CDS
TGACCCAATTTGACAAAAGT+TGG 0.428903 4_2:+20362067 None:intergenic
AGCTGCTGCTAGTTTAGGTC+AGG 0.429613 4_2:-20360403 Msa0593810:CDS
TCAGTTTCTGACATCATAAG+TGG 0.430403 4_2:+20357903 None:intergenic
ACCATTGTAGCATGAATAGT+TGG 0.433555 4_2:+20363195 None:intergenic
AGGAATATATTCACTAAGCT+TGG 0.434347 4_2:-20362091 Msa0593810:CDS
TTGGAAGTGCAAGAGCCTTA+AGG 0.438124 4_2:+20362965 None:intergenic
TCATGCTGAGGCAAAAGCTT+TGG 0.439035 4_2:-20362923 Msa0593810:CDS
AAATTAGTCCTTGAAATTGA+AGG 0.439860 4_2:+20356412 None:intergenic
CTTGAAAACCTTCTAGTTCA+GGG 0.442279 4_2:-20358134 Msa0593810:CDS
AGGAACATACCGGTATGTTT+CGG 0.445651 4_2:+20357968 None:intergenic
TACCTTCAGGACAGGTTGTA+AGG 0.451984 4_2:+20358079 None:intergenic
GAGGCAAGGGCTTAACGTCT+TGG 0.458687 4_2:-20359396 Msa0593810:CDS
TGCAATGTATCAATAACAAT+TGG 0.458874 4_2:-20356111 Msa0593810:three_prime_UTR
ACCTAAAGATGGTTCCCTTA+AGG 0.465316 4_2:-20362980 Msa0593810:CDS
AACCTGAGGCCCGTAAACTT+GGG 0.465701 4_2:-20356978 Msa0593810:CDS
TCCCTCTGTAGGTATTTGTA+GGG 0.469966 4_2:+20356511 None:intergenic
TTATCAACATCACCTAAAGA+TGG 0.471856 4_2:-20362991 Msa0593810:CDS
GCGGTCAAGGTCCAACGCCC+TGG 0.472478 4_2:-20360342 Msa0593810:CDS
GGACTAAAATGTCATTAAGT+TGG 0.474383 4_2:+20356532 None:intergenic
AGCTCAGAGATCAAGTGATT+AGG 0.475418 4_2:-20357863 Msa0593810:CDS
CCATGAATCCATGGAGAAAT+GGG 0.476332 4_2:+20363138 None:intergenic
AGTTTATACTTGAAATTCTA+GGG 0.478261 4_2:-20356700 Msa0593810:three_prime_UTR
GAAATATCACAAAACCTTGA+AGG 0.478269 4_2:+20362837 None:intergenic
TATTGATAATGTGGAGGACT+AGG 0.480624 4_2:+20356668 None:intergenic
GCAGCAAGCACCTTAAAATT+GGG 0.485400 4_2:+20358611 None:intergenic
TAAGGCTCTTGCACTTCCAA+TGG 0.486887 4_2:-20362962 Msa0593810:CDS
CCTATAGCTTCTTCAATGCC+AGG 0.489261 4_2:+20360324 None:intergenic
TCAAGAGCTTAATTATGTGC+AGG 0.492075 4_2:-20360193 Msa0593810:intron
ATCAATCCAGTCCCTCGTAT+TGG 0.493816 4_2:+20356440 None:intergenic
GGATTCGTGCTATTGAGCTT+AGG 0.496981 4_2:-20362111 Msa0593810:CDS
AGAAATGGGTTGTTGAGTTA+TGG 0.499796 4_2:+20363152 None:intergenic
GGGCAAAGTTGTTGCGGTCA+AGG 0.500027 4_2:-20360355 Msa0593810:CDS
TTCCTCAGAACTTCACCATC+AGG 0.502663 4_2:+20358047 None:intergenic
GATGAGGTGAGATTTGAAAT+GGG 0.504597 4_2:+20363108 None:intergenic
AAAGCTCGGTTGAAGCGGTC+GGG 0.505739 4_2:-20360375 Msa0593810:CDS
CCTGGCATTGAAGAAGCTAT+AGG 0.507063 4_2:-20360324 Msa0593810:CDS
CGAAGGTACTAACGATCGAT+TGG 0.507393 4_2:-20359457 Msa0593810:CDS
CTTCTTCAATGCCAGGGCGT+TGG 0.511436 4_2:+20360331 None:intergenic
TGTTGTGTAGGTTGCGGGAA+GGG 0.512424 4_2:-20362218 Msa0593810:intron
AATATCAACGCATAGTATGC+TGG 0.512574 4_2:+20358677 None:intergenic
TGTTGAGTTATGGTGGAAGA+AGG 0.516067 4_2:+20363162 None:intergenic
CTAACGATCGATTGGGTCGA+AGG 0.517986 4_2:-20359449 Msa0593810:CDS
GCTTAACTTCAAGACGATTG+TGG 0.518649 4_2:-20359051 Msa0593810:CDS
TAGGTCAGGTTTATAAAGCT+CGG 0.519929 4_2:-20360389 Msa0593810:CDS
TTATTGTGGACAGAGAAGAT+AGG 0.520089 4_2:-20356308 Msa0593810:intron
CTCAGACAACTGCTCGAGTA+CGG 0.524488 4_2:-20359344 Msa0593810:CDS
ATATCATCAGCACGGTCCAT+TGG 0.525714 4_2:+20362946 None:intergenic
TAAAGCTCGGTTGAAGCGGT+CGG 0.526705 4_2:-20360376 Msa0593810:CDS
TGGGTCAAGGGCTGTCTACT+AGG 0.529031 4_2:-20362051 Msa0593810:CDS
TAGAGATTTCTCTGCTAAAG+AGG 0.529315 4_2:-20358102 Msa0593810:CDS
AATGGGTTGTTGAGTTATGG+TGG 0.530026 4_2:+20363155 None:intergenic
GAAATGCTCATAAACCCAAA+TGG 0.533650 4_2:+20355961 None:intergenic
TTGTTGTGTAGGTTGCGGGA+AGG 0.536381 4_2:-20362219 Msa0593810:intron
CAGGACTCAACAATACCTTC+AGG 0.537914 4_2:+20358066 None:intergenic
TGTGTCACAGCAAAGGCTAA+AGG 0.539286 4_2:-20356866 Msa0593810:three_prime_UTR
TTCCATGCAGATCCTCATCC+TGG 0.539915 4_2:-20359317 Msa0593810:CDS
CTAGCAGCAGCTATCGGCGA+TGG 0.540209 4_2:+20360414 None:intergenic
CGCCTTTGAATGCATTGAGA+GGG 0.540213 4_2:-20360478 Msa0593810:CDS
GCACAATTTCCGAAACATAC+CGG 0.540600 4_2:-20357977 Msa0593810:CDS
CCTAAACTAGCAGCAGCTAT+CGG 0.540644 4_2:+20360408 None:intergenic
TTTATAAAGCTCGGTTGAAG+CGG 0.541624 4_2:-20360380 Msa0593810:CDS
CATTGAAGAAGCTATAGGAT+TGG 0.543334 4_2:-20360319 Msa0593810:CDS
GGCCTTACAACCTGTCCTGA+AGG 0.543439 4_2:-20358081 Msa0593810:CDS
GAGCCATAGCTTCGTAGTCT+CGG 0.545454 4_2:+20359180 None:intergenic
AATCAAATTTGTCCCTCTGT+AGG 0.547234 4_2:+20356500 None:intergenic
ACCTGAGGCCCGTAAACTTG+GGG 0.549273 4_2:-20356977 Msa0593810:CDS
GTTTCTAATAAATAAATATG+TGG 0.549328 4_2:-20360271 Msa0593810:CDS
CTCAACAATACCTTCAGGAC+AGG 0.549422 4_2:+20358071 None:intergenic
GGAATTGAGCCATGAATCCA+TGG 0.549749 4_2:+20363129 None:intergenic
TTGCATTGCCATTGAAGACA+AGG 0.554912 4_2:+20357931 None:intergenic
ATTATAATGGAAACAAAAGA+AGG 0.555471 4_2:+20356013 None:intergenic
AGGTCTCTCACTGTTCTGGA+AGG 0.557957 4_2:-20358653 Msa0593810:CDS
AAATATCACAAAACCTTGAA+GGG 0.558354 4_2:+20362838 None:intergenic
GCCAAAAGATTACCAGGATG+AGG 0.558707 4_2:+20359305 None:intergenic
GAAGGTACTAACGATCGATT+GGG 0.560592 4_2:-20359456 Msa0593810:CDS
CTCAACAACCCATTTCTCCA+TGG 0.560664 4_2:-20363146 Msa0593810:CDS
TTCCCTCTCAATGCATTCAA+AGG 0.562534 4_2:+20360476 None:intergenic
TTCGAATATTGATAATGTGG+AGG 0.566160 4_2:+20356662 None:intergenic
ATATCACCAATACGAGGGAC+TGG 0.569433 4_2:-20356446 Msa0593810:three_prime_UTR
CAAGAAGCAATTGAGAGGCA+AGG 0.576159 4_2:-20359410 Msa0593810:CDS
TAACCGAGACTACGAAGCTA+TGG 0.578460 4_2:-20359183 Msa0593810:CDS
AAGAAGCAATTGAGAGGCAA+GGG 0.580778 4_2:-20359409 Msa0593810:CDS
TTGAAACTAAATGAATAATG+TGG 0.582812 4_2:+20356572 None:intergenic
GCGTCCTCGTCAGGAAATGT+TGG 0.582997 4_2:+20360498 None:intergenic
GAAACCCTAAACCTCTAATG+AGG 0.585397 4_2:+20360289 None:intergenic
ACTTCAAAATAATAAATGAA+AGG 0.586605 4_2:+20355861 None:intergenic
GGTGTTGCCAAAAGATTACC+AGG 0.588144 4_2:+20359299 None:intergenic
TATCTTGAAGCAACAAGTTG+AGG 0.593723 4_2:+20362871 None:intergenic
TTGATAACAGATTCAGCAGA+GGG 0.598912 4_2:+20356601 None:intergenic
ACGCCTTTGAATGCATTGAG+AGG 0.599528 4_2:-20360479 Msa0593810:CDS
AACTTCAAGACGATTGTGGA+CGG 0.600151 4_2:-20359047 Msa0593810:CDS
ACAGAAACATGTGTATGTAA+GGG 0.601716 4_2:+20356074 None:intergenic
TTATGATGTCAGAAACTGAA+AGG 0.603481 4_2:-20357899 Msa0593810:CDS
CTATAGCTTCTTCAATGCCA+GGG 0.605574 4_2:+20360325 None:intergenic
CCTGAGGCCCGTAAACTTGG+GGG 0.608957 4_2:-20356976 Msa0593810:CDS
CATAGATTGTGTCACAGCAA+AGG 0.609015 4_2:-20356873 Msa0593810:exon
TGCAGGAGGGACAAAATGCA+AGG 0.613387 4_2:-20359550 Msa0593810:intron
TATCGGCGATGGAGATATTG+TGG 0.615296 4_2:+20360425 None:intergenic
ACCAACTATTCATGCTACAA+TGG 0.615671 4_2:-20363196 Msa0593810:exon
AAGGTATTGTTGAGTCCTGA+TGG 0.620888 4_2:-20358062 Msa0593810:CDS
TGTCTTCAATGGCAATGCAA+AGG 0.625326 4_2:-20357928 Msa0593810:CDS
AGTATCGGTAGCAAAAGAGA+TGG 0.625690 4_2:+20357804 None:intergenic
TTGAAAACCTTCTAGTTCAG+GGG 0.625717 4_2:-20358133 Msa0593810:CDS
AGCTCCTCGAGATACTCAGA+TGG 0.633827 4_2:+20362016 None:intergenic
TACCAGGATGAGGATCTGCA+TGG 0.634417 4_2:+20359315 None:intergenic
TCCCTACAAATACCTACAGA+GGG 0.641295 4_2:-20356512 Msa0593810:three_prime_UTR
ATGATCAAGAAGCAATTGAG+AGG 0.643370 4_2:-20359415 Msa0593810:CDS
TTTGCCAACATTTCCTGACG+AGG 0.644621 4_2:-20360502 Msa0593810:CDS
CTGAGGCCCGTAAACTTGGG+GGG 0.652407 4_2:-20356975 Msa0593810:CDS
GTCCCTACAAATACCTACAG+AGG 0.654631 4_2:-20356513 Msa0593810:three_prime_UTR
TTGGGACTATACAAGTGCGA+AGG 0.655685 4_2:-20359474 Msa0593810:CDS
TGCTGATGATATTCATGCTG+AGG 0.656845 4_2:-20362935 Msa0593810:CDS
TTGGAATATCACCAATACGA+GGG 0.660471 4_2:-20356451 Msa0593810:three_prime_UTR
TGATTTGAAAGAGAGTGATG+AGG 0.668048 4_2:+20363092 None:intergenic
CAGCATGAATATCATCAGCA+CGG 0.670970 4_2:+20362938 None:intergenic
TCATTAAGTTGGTAATATCG+AGG 0.670997 4_2:+20356543 None:intergenic
GTCCTGATGGTGAAGTTCTG+AGG 0.671724 4_2:-20358049 Msa0593810:CDS
TATCGTCGTCATTATTGATG+CGG 0.674861 4_2:-20356165 Msa0593810:three_prime_UTR
TTGTCCATCTGAGTATCTCG+AGG 0.676419 4_2:-20362020 Msa0593810:CDS
ACAGGTGCTTCAGCAACCTG+AGG 0.676737 4_2:-20356992 Msa0593810:intron
TTTGATAACAGATTCAGCAG+AGG 0.688534 4_2:+20356600 None:intergenic
GCGGTCGGGCAAAGTTGTTG+CGG 0.688582 4_2:-20360361 Msa0593810:CDS
GTCTTGGATCTAGTAAACAG+CGG 0.723373 4_2:-20359380 Msa0593810:CDS
TTTGGAATATCACCAATACG+AGG 0.727351 4_2:-20356452 Msa0593810:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCAATTTTGTTAATAT+AGG - chr4_2:20357522-20357541 Msa0593810:intron 10.0%
!!! ATTATATTAGATTTTTCTTT+TGG - chr4_2:20359568-20359587 Msa0593810:intron 10.0%
!!! TTATATTAGATTTTTCTTTT+GGG - chr4_2:20359569-20359588 Msa0593810:intron 10.0%
!! AATGAAATAATAAATTGTTA+AGG - chr4_2:20360886-20360905 Msa0593810:intron 10.0%
!!! TGAAATATATTTTTTTTGAA+TGG - chr4_2:20362098-20362117 Msa0593810:CDS 10.0%
!!! TTGTATTTTAATTTTTGTTT+TGG - chr4_2:20362944-20362963 Msa0593810:CDS 10.0%
!!! AAAAATTCTAGTTATTATAA+TGG + chr4_2:20363172-20363191 None:intergenic 10.0%
!!! TTTTTGTGATTATTTTTTGT+GGG - chr4_2:20356371-20356390 Msa0593810:three_prime_UTR 15.0%
!! CAAAAGATAATCAAAAAAAA+GGG + chr4_2:20356885-20356904 None:intergenic 15.0%
!! ACAAAAGATAATCAAAAAAA+AGG + chr4_2:20356886-20356905 None:intergenic 15.0%
!!! TTTTTTTTGATTATCTTTTG+TGG - chr4_2:20356885-20356904 Msa0593810:exon 15.0%
!!! TTTTTTTGATTATCTTTTGT+GGG - chr4_2:20356886-20356905 Msa0593810:exon 15.0%
!! GTTTCTAATAAATAAATATG+TGG - chr4_2:20358898-20358917 Msa0593810:intron 15.0%
!!! TATATTAGATTTTTCTTTTG+GGG - chr4_2:20359570-20359589 Msa0593810:intron 15.0%
!! TTTAAAAATGACAAATAAGT+AGG + chr4_2:20360792-20360811 None:intergenic 15.0%
!! TAAATTGTTAAGGATATTAT+AGG - chr4_2:20360896-20360915 Msa0593810:intron 15.0%
!!! TCAAAAATTATTTTACATGT+TGG - chr4_2:20361519-20361538 Msa0593810:intron 15.0%
!!! AGTAATAAATTGCTATATTT+TGG + chr4_2:20361640-20361659 None:intergenic 15.0%
!!! ATTAAAATTTTGCAATTTCA+AGG - chr4_2:20362689-20362708 Msa0593810:intron 15.0%
!! ACTTCAAAATAATAAATGAA+AGG + chr4_2:20363311-20363330 None:intergenic 15.0%
!! TCATAAAATTGAGAGATAAT+TGG + chr4_2:20355932-20355951 None:intergenic 20.0%
!! TCACAAAAAGATTAAAACTT+TGG + chr4_2:20356360-20356379 None:intergenic 20.0%
!!! CTTTTTGTGATTATTTTTTG+TGG - chr4_2:20356370-20356389 Msa0593810:three_prime_UTR 20.0%
!! CAAAAGATATTCACAAAAAA+GGG + chr4_2:20356425-20356444 None:intergenic 20.0%
!! ACAAAAGATATTCACAAAAA+AGG + chr4_2:20356426-20356445 None:intergenic 20.0%
!!! TTTTTTGTGAATATCTTTTG+TGG - chr4_2:20356425-20356444 Msa0593810:three_prime_UTR 20.0%
!!! TTTTTGTGAATATCTTTTGT+GGG - chr4_2:20356426-20356445 Msa0593810:three_prime_UTR 20.0%
!! TTGAATATAATTACATGTGT+TGG - chr4_2:20356533-20356552 Msa0593810:three_prime_UTR 20.0%
!! ATTATATTCAATTACAGTGT+TGG + chr4_2:20356524-20356543 None:intergenic 20.0%
!! TTGAATATAATCACATATGT+TGG - chr4_2:20356725-20356744 Msa0593810:three_prime_UTR 20.0%
!!! TTTTTGTGAATATCTTTTGT+GGG - chr4_2:20356426-20356445 Msa0593810:three_prime_UTR 20.0%
!! ATTTCAGATTGTGTTTAATT+TGG - chr4_2:20356975-20356994 Msa0593810:CDS 20.0%
!!! TTTCAGATTGTGTTTAATTT+GGG - chr4_2:20356976-20356995 Msa0593810:CDS 20.0%
!!! ACTATTTGACTATTTCATTT+TGG - chr4_2:20357631-20357650 Msa0593810:intron 20.0%
!!! CTATTTGACTATTTCATTTT+GGG - chr4_2:20357632-20357651 Msa0593810:intron 20.0%
!!! AAATTTATATCGATTTAGTG+CGG - chr4_2:20357709-20357728 Msa0593810:intron 20.0%
!!! TCAATTCTGATTACTTTTAT+AGG - chr4_2:20357732-20357751 Msa0593810:intron 20.0%
!!! GGGTATAATTTTTTTTTTTG+AGG - chr4_2:20358281-20358300 Msa0593810:intron 20.0%
!! GATGAAAACAAACATAATAA+AGG + chr4_2:20358545-20358564 None:intergenic 20.0%
!! TCATTATCAAATACAGATTT+CGG + chr4_2:20359021-20359040 None:intergenic 20.0%
!! AATACTGATCACTATTTATA+GGG - chr4_2:20359069-20359088 Msa0593810:CDS 20.0%
!!! GTTTTATTCATTAACATACA+AGG + chr4_2:20359535-20359554 None:intergenic 20.0%
!! TTGTATCAATATCCATTTAA+TGG - chr4_2:20360158-20360177 Msa0593810:intron 20.0%
!!! AAACAATGATGGATTTAAAA+TGG + chr4_2:20360695-20360714 None:intergenic 20.0%
!!! CCTTTTTATTTGTTGTTTTA+AGG + chr4_2:20360951-20360970 None:intergenic 20.0%
!! CCTTAAAACAACAAATAAAA+AGG - chr4_2:20360948-20360967 Msa0593810:intron 20.0%
!! AAACAACAAATAAAAAGGAA+TGG - chr4_2:20360953-20360972 Msa0593810:intron 20.0%
!!! TTTTGAGTTAAACATTTAAG+TGG + chr4_2:20361505-20361524 None:intergenic 20.0%
!!! TTAATTCTATGTTCTTTTGA+TGG - chr4_2:20361593-20361612 Msa0593810:intron 20.0%
!!! AATAAATTGCTATATTTTGG+TGG + chr4_2:20361637-20361656 None:intergenic 20.0%
!! AAGGTTTAAATGTTAATTGA+GGG + chr4_2:20361667-20361686 None:intergenic 20.0%
!! AAAGGTTTAAATGTTAATTG+AGG + chr4_2:20361668-20361687 None:intergenic 20.0%
!!! TGTGTAATTTTTTGATGTAT+TGG - chr4_2:20361853-20361872 Msa0593810:intron 20.0%
!! TAGTTTATACTTGAAATTCT+AGG - chr4_2:20362468-20362487 Msa0593810:intron 20.0%
!! AGTTTATACTTGAAATTCTA+GGG - chr4_2:20362469-20362488 Msa0593810:intron 20.0%
!!! ATTTTCGAATATTGATAATG+TGG + chr4_2:20362513-20362532 None:intergenic 20.0%
!! TTGAAACTAAATGAATAATG+TGG + chr4_2:20362600-20362619 None:intergenic 20.0%
!!! ATCAGATATTTACAGTTTTT+TGG + chr4_2:20362985-20363004 None:intergenic 20.0%
!!! ATTATAATGGAAACAAAAGA+AGG + chr4_2:20363159-20363178 None:intergenic 20.0%
!! TTAATTGACAAAATAGAGTT+TGG + chr4_2:20363255-20363274 None:intergenic 20.0%
!!! GTAAGAATTTGCTTAATTTA+CGG + chr4_2:20363289-20363308 None:intergenic 20.0%
!! TGATTCTTTTTCTTCTTTGA+AGG - chr4_2:20355949-20355968 Msa0593810:three_prime_UTR 25.0%
! AAATATCACAAAACCTTGAA+GGG + chr4_2:20356334-20356353 None:intergenic 25.0%
!!! TTTGGTTTGTTTTTGTGAAT+TGG - chr4_2:20356394-20356413 Msa0593810:three_prime_UTR 25.0%
!! GTTTTTGTGAATATCTTTTG+TGG - chr4_2:20356827-20356846 Msa0593810:three_prime_UTR 25.0%
!!! TGTTTAATTTGGGTTCATTT+GGG - chr4_2:20356986-20357005 Msa0593810:CDS 25.0%
!!! AGTATTGAATTCTTACCTTT+TGG - chr4_2:20357188-20357207 Msa0593810:intron 25.0%
! CAAATGAAAAGAAAACCAAA+AGG + chr4_2:20357206-20357225 None:intergenic 25.0%
! AGAATTAATTCTGACATGTT+TGG - chr4_2:20357336-20357355 Msa0593810:intron 25.0%
! TCTAACTTGAACTTAGAATT+TGG - chr4_2:20357397-20357416 Msa0593810:intron 25.0%
!! TTTTTGCAAAAGTTACACTT+TGG + chr4_2:20357857-20357876 None:intergenic 25.0%
!! TGTAACTTTTGCAAAAATCA+TGG - chr4_2:20357860-20357879 Msa0593810:CDS 25.0%
!!! ATACGTTTTGATTTTATCAC+TGG + chr4_2:20358035-20358054 None:intergenic 25.0%
!!! TTTAATTTTCCTCTTGCTTT+TGG + chr4_2:20358180-20358199 None:intergenic 25.0%
! CACAGAGTAATTTAAAAACA+TGG - chr4_2:20358476-20358495 Msa0593810:intron 25.0%
! TGATAGTAGTTTGATACAAA+AGG - chr4_2:20359043-20359062 Msa0593810:CDS 25.0%
! CAATACTGATCACTATTTAT+AGG - chr4_2:20359068-20359087 Msa0593810:CDS 25.0%
! AGACTCAATCCTTAATAAAT+AGG - chr4_2:20359098-20359117 Msa0593810:CDS 25.0%
! GACTCAATCCTTAATAAATA+GGG - chr4_2:20359099-20359118 Msa0593810:CDS 25.0%
! TAAGATTGAAAACTGATCTT+AGG - chr4_2:20359188-20359207 Msa0593810:CDS 25.0%
! GATATTATGCTAGAATATCT+TGG + chr4_2:20359221-20359240 None:intergenic 25.0%
! AAATACACTCATTATATGCT+TGG + chr4_2:20359471-20359490 None:intergenic 25.0%
!!! GATTGAATGTTAATTTTGAC+AGG - chr4_2:20359592-20359611 Msa0593810:intron 25.0%
!!! AAACTTGCTTTTCTTGATTT+CGG - chr4_2:20359900-20359919 Msa0593810:intron 25.0%
! AACATTATCTCACCATTAAA+TGG + chr4_2:20360173-20360192 None:intergenic 25.0%
! CTCTAATACAGAAAGAAAAT+TGG + chr4_2:20360221-20360240 None:intergenic 25.0%
! TACAAAAACAACGGATAAAA+TGG + chr4_2:20360756-20360775 None:intergenic 25.0%
!! CAGATTTTCTACAAAAACAA+CGG + chr4_2:20360765-20360784 None:intergenic 25.0%
!!! TGTTTTAAGGTTATTTACAC+CGG + chr4_2:20360938-20360957 None:intergenic 25.0%
! AACAAATAAAAAGGAATGGA+GGG - chr4_2:20360957-20360976 Msa0593810:intron 25.0%
! CAAAAAATTACACATTGTCT+GGG + chr4_2:20361847-20361866 None:intergenic 25.0%
! TCAAAAAATTACACATTGTC+TGG + chr4_2:20361848-20361867 None:intergenic 25.0%
!! CTATACATTTTACTGTTTCA+AGG + chr4_2:20361975-20361994 None:intergenic 25.0%
!! TTTAGAACATATAGTTGACT+TGG - chr4_2:20362047-20362066 Msa0593810:CDS 25.0%
!!! ATCTATGTAGATGTTGTTTT+TGG + chr4_2:20362283-20362302 None:intergenic 25.0%
! CAAAAGTAATTCAAACTTCT+AGG + chr4_2:20362352-20362371 None:intergenic 25.0%
!! TTCTTTGTCATATTTTGCAA+TGG - chr4_2:20362409-20362428 Msa0593810:intron 25.0%
! AAATTAGTCCTTGAAATTGA+AGG + chr4_2:20362760-20362779 None:intergenic 25.0%
!!! TATGTTTTGTTTTTTCTGTC+AGG - chr4_2:20362838-20362857 Msa0593810:intron 25.0%
!!! TACAGTTTTTTGGACTAAAA+TGG + chr4_2:20362975-20362994 None:intergenic 25.0%
! TGCAATGTATCAATAACAAT+TGG - chr4_2:20363058-20363077 Msa0593810:CDS 25.0%
!! AATTTTTGTCAACTTGCATT+TGG - chr4_2:20363185-20363204 Msa0593810:exon 25.0%
ACGAAACTGTGAATTCAATA+AGG + chr4_2:20356113-20356132 None:intergenic 30.0%
TTATCAACATCACCTAAAGA+TGG - chr4_2:20356178-20356197 Msa0593810:three_prime_UTR 30.0%
GAAATATCACAAAACCTTGA+AGG + chr4_2:20356335-20356354 None:intergenic 30.0%
!!! GTGATTATTTTTTGTGGGTT+TGG - chr4_2:20356376-20356395 Msa0593810:three_prime_UTR 30.0%
CTACACAACAAAACCAAAAA+CGG + chr4_2:20356941-20356960 None:intergenic 30.0%
!! GTGTTTAATTTGGGTTCATT+TGG - chr4_2:20356985-20357004 Msa0593810:CDS 30.0%
AGGAATATATTCACTAAGCT+TGG - chr4_2:20357078-20357097 Msa0593810:intron 30.0%
TCTAGAGATTGATTAATGTC+TGG - chr4_2:20357274-20357293 Msa0593810:intron 30.0%
! TTCAAGTTAGAACCAATTCA+GGG + chr4_2:20357388-20357407 None:intergenic 30.0%
! TAGGTTGAATAGTAAATTCG+AGG + chr4_2:20357432-20357451 None:intergenic 30.0%
!! ACTATTTCATTTTGGGTGTT+TGG - chr4_2:20357639-20357658 Msa0593810:intron 30.0%
TTTGTGAATGTTTGGATTCA+AGG + chr4_2:20357913-20357932 None:intergenic 30.0%
GCTTCAAATTTGTGAATGTT+TGG + chr4_2:20357921-20357940 None:intergenic 30.0%
! ACATTCACAAATTTGAAGCA+TGG - chr4_2:20357922-20357941 Msa0593810:CDS 30.0%
!!! TGAAGCATGGTTTTAAATTG+CGG - chr4_2:20357935-20357954 Msa0593810:CDS 30.0%
!!! ATGGTTTTAAATTGCGGTTA+CGG - chr4_2:20357941-20357960 Msa0593810:CDS 30.0%
AAATAACTACCGTATACATG+AGG - chr4_2:20358139-20358158 Msa0593810:CDS 30.0%
TGATGTAGTGTTGTCAATTA+TGG - chr4_2:20358519-20358538 Msa0593810:CDS 30.0%
ACATCAGTGACAAATTTCAA+TGG + chr4_2:20358588-20358607 None:intergenic 30.0%
CCTGATTTCCCTATTTATTA+AGG + chr4_2:20359110-20359129 None:intergenic 30.0%
CCTTAATAAATAGGGAAATC+AGG - chr4_2:20359107-20359126 Msa0593810:CDS 30.0%
CATATCTTAGATGATCTCTT+CGG + chr4_2:20359167-20359186 None:intergenic 30.0%
ATAAATATTGAACCCTGTTC+TGG - chr4_2:20359285-20359304 Msa0593810:CDS 30.0%
CAAAAAATTGTATGCTGACA+AGG - chr4_2:20359647-20359666 Msa0593810:intron 30.0%
!!! TCTTAGTTCCTGATGTTTTT+TGG - chr4_2:20359676-20359695 Msa0593810:intron 30.0%
!!! CTTAGTTCCTGATGTTTTTT+GGG - chr4_2:20359677-20359696 Msa0593810:intron 30.0%
!! AACTTGCTTTTCTTGATTTC+GGG - chr4_2:20359901-20359920 Msa0593810:intron 30.0%
ATGCTCTTGATTTCTTATCT+AGG - chr4_2:20360021-20360040 Msa0593810:intron 30.0%
TGCTCTTGATTTCTTATCTA+GGG - chr4_2:20360022-20360041 Msa0593810:intron 30.0%
TATCTGTATTAGTGCTTCAT+AGG + chr4_2:20360255-20360274 None:intergenic 30.0%
! CATACTATGCGTTGATATTA+AGG - chr4_2:20360496-20360515 Msa0593810:CDS 30.0%
! ATATGCTGATCCCAATTTTA+AGG - chr4_2:20360548-20360567 Msa0593810:intron 30.0%
! CATATCCCTATTTTGCTAAA+AGG - chr4_2:20360583-20360602 Msa0593810:intron 30.0%
! AGAAGCCTTTTAGCAAAATA+GGG + chr4_2:20360591-20360610 None:intergenic 30.0%
! TAGAAGCCTTTTAGCAAAAT+AGG + chr4_2:20360592-20360611 None:intergenic 30.0%
! TTTTGCTAAAAGGCTTCTAA+CGG - chr4_2:20360593-20360612 Msa0593810:intron 30.0%
TCAACAAGTTCAAACAATGA+TGG + chr4_2:20360706-20360725 None:intergenic 30.0%
AAACAACGGATAAAATGGAA+AGG + chr4_2:20360751-20360770 None:intergenic 30.0%
CAACAAATAAAAAGGAATGG+AGG - chr4_2:20360956-20360975 Msa0593810:intron 30.0%
TTATGATGTCAGAAACTGAA+AGG - chr4_2:20361270-20361289 Msa0593810:intron 30.0%
! CTTTTTCTTACCTGTAGTAT+CGG + chr4_2:20361383-20361402 None:intergenic 30.0%
!! TTACCTTCAATCTGAAGTTT+TGG - chr4_2:20361457-20361476 Msa0593810:intron 30.0%
CAATTGTGTCCTTAGTTAAA+AGG - chr4_2:20361768-20361787 Msa0593810:intron 30.0%
!! AATTACTTTTGCGATACTCA+AGG - chr4_2:20362361-20362380 Msa0593810:intron 30.0%
!! TTCGAATATTGATAATGTGG+AGG + chr4_2:20362510-20362529 None:intergenic 30.0%
!! TCATTAAGTTGGTAATATCG+AGG + chr4_2:20362629-20362648 None:intergenic 30.0%
GGACTAAAATGTCATTAAGT+TGG + chr4_2:20362640-20362659 None:intergenic 30.0%
! TGCAATTTCAAGGATCATTT+TGG - chr4_2:20362699-20362718 Msa0593810:intron 30.0%
GATACATTCCTTCAATTTCA+AGG - chr4_2:20362749-20362768 Msa0593810:intron 30.0%
!!! TTTTTTCTGTCAGGTTATTG+TGG - chr4_2:20362847-20362866 Msa0593810:intron 30.0%
ACAGAAACATGTGTATGTAA+GGG + chr4_2:20363098-20363117 None:intergenic 30.0%
AACAGAAACATGTGTATGTA+AGG + chr4_2:20363099-20363118 None:intergenic 30.0%
ACCAACTATTCATGCTACAA+TGG - chr4_2:20355973-20355992 Msa0593810:three_prime_UTR 35.0%
ACCATTGTAGCATGAATAGT+TGG + chr4_2:20355977-20355996 None:intergenic 35.0%
!! AGAAATGGGTTGTTGAGTTA+TGG + chr4_2:20356020-20356039 None:intergenic 35.0%
! GATGAGGTGAGATTTGAAAT+GGG + chr4_2:20356064-20356083 None:intergenic 35.0%
TGATGAGGTGAGATTTGAAA+TGG + chr4_2:20356065-20356084 None:intergenic 35.0%
TGATTTGAAAGAGAGTGATG+AGG + chr4_2:20356080-20356099 None:intergenic 35.0%
GAAACTGAACTTTGTGATGA+TGG + chr4_2:20356157-20356176 None:intergenic 35.0%
TATCTTGAAGCAACAAGTTG+AGG + chr4_2:20356301-20356320 None:intergenic 35.0%
!! CAACTTGTTGCTTCAAGATA+TGG - chr4_2:20356301-20356320 Msa0593810:intron 35.0%
!! ATATGGTTCTAAACCCTTCA+AGG - chr4_2:20356318-20356337 Msa0593810:intron 35.0%
!! GAATTGTGTTGATCCGTTTT+TGG - chr4_2:20356925-20356944 Msa0593810:CDS 35.0%
!!! CGTTTTTGGTTTTGTTGTGT+AGG - chr4_2:20356939-20356958 Msa0593810:CDS 35.0%
!!! ATTTGGGTTGAAGCTTTTGT+GGG - chr4_2:20357002-20357021 Msa0593810:intron 35.0%
GAGTTGCTGATCAGAATAAA+AGG - chr4_2:20357037-20357056 Msa0593810:intron 35.0%
! TGGACCAACTTTTGTCAAAT+TGG - chr4_2:20357098-20357117 Msa0593810:intron 35.0%
! GGACCAACTTTTGTCAAATT+GGG - chr4_2:20357099-20357118 Msa0593810:intron 35.0%
TGACCCAATTTGACAAAAGT+TGG + chr4_2:20357105-20357124 None:intergenic 35.0%
! ACTTTTGTCAAATTGGGTCA+AGG - chr4_2:20357105-20357124 Msa0593810:intron 35.0%
! CTTTTGTCAAATTGGGTCAA+GGG - chr4_2:20357106-20357125 Msa0593810:intron 35.0%
TACTCAGATGGACAAATATC+AGG + chr4_2:20357144-20357163 None:intergenic 35.0%
! AATTTTCCTTCCTCGAAAAG+TGG + chr4_2:20357302-20357321 None:intergenic 35.0%
!! AACTGATTTTGTCCCTGAAT+TGG - chr4_2:20357373-20357392 Msa0593810:intron 35.0%
! GTTCAAGTTAGAACCAATTC+AGG + chr4_2:20357389-20357408 None:intergenic 35.0%
CGATACGTTCAAGTAAAAGT+AGG + chr4_2:20357451-20357470 None:intergenic 35.0%
AGAGTTTGACCAAATTACAG+TGG - chr4_2:20357810-20357829 Msa0593810:CDS 35.0%
! ATCATAGTGCCACTGTAATT+TGG + chr4_2:20357822-20357841 None:intergenic 35.0%
TTATGCTGTGACCTTTATCA+GGG - chr4_2:20357964-20357983 Msa0593810:CDS 35.0%
ATAGGTGTACCGCATATATA+CGG + chr4_2:20358113-20358132 None:intergenic 35.0%
TATATATGCGGTACACCTAT+AGG - chr4_2:20358113-20358132 Msa0593810:CDS 35.0%
!! CGGTAGTTATTTTCACCTAT+AGG + chr4_2:20358131-20358150 None:intergenic 35.0%
!! GACTTTTGATTGTTTTGTGC+AGG + chr4_2:20358203-20358222 None:intergenic 35.0%
AGTACACTATCCTGCAATAA+AGG + chr4_2:20358243-20358262 None:intergenic 35.0%
ACTACTGGATAGTATACTAC+TGG - chr4_2:20358260-20358279 Msa0593810:intron 35.0%
CTACTGGATAGTATACTACT+GGG - chr4_2:20358261-20358280 Msa0593810:intron 35.0%
! TGCATTTTGCCGCAATATAA+AGG + chr4_2:20358369-20358388 None:intergenic 35.0%
AGCTGATATGGTCTAAATTG+CGG - chr4_2:20358398-20358417 Msa0593810:intron 35.0%
GTAAAGCACACAAATGATCA+AGG + chr4_2:20358633-20358652 None:intergenic 35.0%
TAGGTCAGGTTTATAAAGCT+CGG - chr4_2:20358780-20358799 Msa0593810:intron 35.0%
TTTATAAAGCTCGGTTGAAG+CGG - chr4_2:20358789-20358808 Msa0593810:intron 35.0%
CATTGAAGAAGCTATAGGAT+TGG - chr4_2:20358850-20358869 Msa0593810:intron 35.0%
TTCTACCTCATTAGAGGTTT+AGG - chr4_2:20358875-20358894 Msa0593810:intron 35.0%
TCTACCTCATTAGAGGTTTA+GGG - chr4_2:20358876-20358895 Msa0593810:intron 35.0%
TCAAGAGCTTAATTATGTGC+AGG - chr4_2:20358976-20358995 Msa0593810:intron 35.0%
!! TATGTGCAGGTTAGTTCTTT+TGG - chr4_2:20358989-20359008 Msa0593810:intron 35.0%
CATTATAAAGACGCCTCATT+GGG + chr4_2:20359332-20359351 None:intergenic 35.0%
GTATAGTCCCAAAAAACATC+AGG + chr4_2:20359687-20359706 None:intergenic 35.0%
ATGATCAAGAAGCAATTGAG+AGG - chr4_2:20359754-20359773 Msa0593810:intron 35.0%
GAAGCGAGATTTGCAATAAT+TGG - chr4_2:20359945-20359964 Msa0593810:intron 35.0%
TCAAAAAAGTTTCGTAGTGC+AGG + chr4_2:20360071-20360090 None:intergenic 35.0%
ATGTTAGTGTTGTATCTGTG+TGG - chr4_2:20360326-20360345 Msa0593810:CDS 35.0%
! ACACCTTCAATCTAAAGTGT+CGG - chr4_2:20360352-20360371 Msa0593810:CDS 35.0%
TCAGAATCTGCAAGAAAGTT+GGG + chr4_2:20360426-20360445 None:intergenic 35.0%
ATCAGAATCTGCAAGAAAGT+TGG + chr4_2:20360427-20360446 None:intergenic 35.0%
AATATCAACGCATAGTATGC+TGG + chr4_2:20360495-20360514 None:intergenic 35.0%
GCATCTCTTAGATATGGATT+TGG + chr4_2:20360621-20360640 None:intergenic 35.0%
! ATCAGAGCATCTCTTAGATA+TGG + chr4_2:20360627-20360646 None:intergenic 35.0%
!!! TCTGATTGAGTTGCTTTTCA+AGG - chr4_2:20360641-20360660 Msa0593810:intron 35.0%
!!! ATTGAGTTGCTTTTCAAGGA+TGG - chr4_2:20360645-20360664 Msa0593810:intron 35.0%
!! TTTTCAAGGATGGAAAGTTC+AGG - chr4_2:20360655-20360674 Msa0593810:intron 35.0%
AACGGATAAAATGGAAAGGA+GGG + chr4_2:20360747-20360766 None:intergenic 35.0%
AGGAAAAAGACCAATAACTC+CGG - chr4_2:20360916-20360935 Msa0593810:intron 35.0%
GTTATTTACACCGGAGTTAT+TGG + chr4_2:20360929-20360948 None:intergenic 35.0%
!!! TGATTTTTTTCCGATGCAGA+TGG - chr4_2:20361006-20361025 Msa0593810:intron 35.0%
!! CTTGAAAACCTTCTAGTTCA+GGG - chr4_2:20361035-20361054 Msa0593810:intron 35.0%
!! TTGAAAACCTTCTAGTTCAG+GGG - chr4_2:20361036-20361055 Msa0593810:intron 35.0%
TAGAGATTTCTCTGCTAAAG+AGG - chr4_2:20361067-20361086 Msa0593810:intron 35.0%
!! GTATCTGAAGCTTTTACTCT+CGG - chr4_2:20361170-20361189 Msa0593810:intron 35.0%
TCAAAAAGTCAGGAACATAC+CGG + chr4_2:20361214-20361233 None:intergenic 35.0%
TCAGTTTCTGACATCATAAG+TGG + chr4_2:20361269-20361288 None:intergenic 35.0%
GAGATCAAGTGATTAGGATA+TGG - chr4_2:20361312-20361331 Msa0593810:intron 35.0%
TCAAAACACAACATTGGCAA+AGG + chr4_2:20361686-20361705 None:intergenic 35.0%
TTGAGGTCAAAACACAACAT+TGG + chr4_2:20361692-20361711 None:intergenic 35.0%
TAACTAAGGACACAATTGTG+AGG + chr4_2:20361766-20361785 None:intergenic 35.0%
CAAAGAATCGTATTATGCAC+AGG - chr4_2:20362159-20362178 Msa0593810:CDS 35.0%
CGCTTTCTTATGCAATTACT+TGG - chr4_2:20362253-20362272 Msa0593810:intron 35.0%
!! TATTGATAATGTGGAGGACT+AGG + chr4_2:20362504-20362523 None:intergenic 35.0%
! TTGATAACAGATTCAGCAGA+GGG + chr4_2:20362571-20362590 None:intergenic 35.0%
! TTTGATAACAGATTCAGCAG+AGG + chr4_2:20362572-20362591 None:intergenic 35.0%
AATCAAATTTGTCCCTCTGT+AGG + chr4_2:20362672-20362691 None:intergenic 35.0%
! TTTGGAATATCACCAATACG+AGG - chr4_2:20362717-20362736 Msa0593810:intron 35.0%
TTGGAATATCACCAATACGA+GGG - chr4_2:20362718-20362737 Msa0593810:intron 35.0%
TTATTGTGGACAGAGAAGAT+AGG - chr4_2:20362861-20362880 Msa0593810:CDS 35.0%
TATCGTCGTCATTATTGATG+CGG - chr4_2:20363004-20363023 Msa0593810:CDS 35.0%
GAAATGCTCATAAACCCAAA+TGG + chr4_2:20363211-20363230 None:intergenic 35.0%
! TGTTGAGTTATGGTGGAAGA+AGG + chr4_2:20356010-20356029 None:intergenic 40.0%
!! AATGGGTTGTTGAGTTATGG+TGG + chr4_2:20356017-20356036 None:intergenic 40.0%
CCATGAATCCATGGAGAAAT+GGG + chr4_2:20356034-20356053 None:intergenic 40.0%
ACCTAAAGATGGTTCCCTTA+AGG - chr4_2:20356189-20356208 Msa0593810:three_prime_UTR 40.0%
CAGCATGAATATCATCAGCA+CGG + chr4_2:20356234-20356253 None:intergenic 40.0%
TGCTGATGATATTCATGCTG+AGG - chr4_2:20356234-20356253 Msa0593810:three_prime_UTR 40.0%
ACATATGTTGGACACTAGCA+TGG - chr4_2:20356737-20356756 Msa0593810:three_prime_UTR 40.0%
CATAAGTGTCTGTGCTACAA+AGG - chr4_2:20356796-20356815 Msa0593810:three_prime_UTR 40.0%
!!! TGGTTTTGTTGTGTAGGTTG+CGG - chr4_2:20356945-20356964 Msa0593810:CDS 40.0%
!!! CATTTGGGTTGAAGCTTTTG+TGG - chr4_2:20357001-20357020 Msa0593810:intron 40.0%
CTCAAAGCTAAGTGTGTGTT+TGG + chr4_2:20357549-20357568 None:intergenic 40.0%
ACATGCACGAAATAGTCAAC+AGG + chr4_2:20357772-20357791 None:intergenic 40.0%
! CATGTGATTTTCTTGCCTCA+AGG - chr4_2:20357787-20357806 Msa0593810:intron 40.0%
ATTTGGTCAAACTCTCCTTG+AGG + chr4_2:20357805-20357824 None:intergenic 40.0%
GTTATGCTGTGACCTTTATC+AGG - chr4_2:20357963-20357982 Msa0593810:CDS 40.0%
TACAACGTGCCGTATATATG+CGG - chr4_2:20358101-20358120 Msa0593810:CDS 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr4_2:20358169-20358188 None:intergenic 40.0%
!!! TTCCTCTTGCTTTTGGTGTT+AGG + chr4_2:20358173-20358192 None:intergenic 40.0%
ACACTATCCTGCAATAAAGG+TGG + chr4_2:20358240-20358259 None:intergenic 40.0%
ATTGCAGGATAGTGTACTAC+TGG - chr4_2:20358245-20358264 Msa0593810:intron 40.0%
!!! TTTTTTTTGAGGCCCATCCT+TGG - chr4_2:20358292-20358311 Msa0593810:intron 40.0%
!!! TTTTTTTGAGGCCCATCCTT+GGG - chr4_2:20358293-20358312 Msa0593810:intron 40.0%
TTGCCGCAATATAAAGGTCA+GGG + chr4_2:20358363-20358382 None:intergenic 40.0%
TTTGCCGCAATATAAAGGTC+AGG + chr4_2:20358364-20358383 None:intergenic 40.0%
GCAGAAAAATGCAGCTGATA+TGG - chr4_2:20358386-20358405 Msa0593810:intron 40.0%
TACAACTATGACCGCAATAC+AGG + chr4_2:20358452-20358471 None:intergenic 40.0%
TTGTGTGCTTTACCTTTACC+AGG - chr4_2:20358640-20358659 Msa0593810:CDS 40.0%
TTCCCTCTCAATGCATTCAA+AGG + chr4_2:20358696-20358715 None:intergenic 40.0%
GAATGCATTGAGAGGGAATT+AGG - chr4_2:20358698-20358717 Msa0593810:intron 40.0%
CTATAGCTTCTTCAATGCCA+GGG + chr4_2:20358847-20358866 None:intergenic 40.0%
TTGGACTTCTACCTCATTAG+AGG - chr4_2:20358869-20358888 Msa0593810:intron 40.0%
GAAACCCTAAACCTCTAATG+AGG + chr4_2:20358883-20358902 None:intergenic 40.0%
CCATTATAAAGACGCCTCAT+TGG + chr4_2:20359333-20359352 None:intergenic 40.0%
! CCAATGAGGCGTCTTTATAA+TGG - chr4_2:20359330-20359349 Msa0593810:CDS 40.0%
CTTTAGGTGTAAGTCGTTCA+CGG + chr4_2:20359362-20359381 None:intergenic 40.0%
TGAACGACTTACACCTAAAG+CGG - chr4_2:20359362-20359381 Msa0593810:CDS 40.0%
AACTTGAGCAAAGCTGCAAA+GGG + chr4_2:20359438-20359457 None:intergenic 40.0%
AAACTTGAGCAAAGCTGCAA+AGG + chr4_2:20359439-20359458 None:intergenic 40.0%
!! TAATTTTGACAGGTTCCTGC+AGG - chr4_2:20359602-20359621 Msa0593810:intron 40.0%
!! GAAGGTACTAACGATCGATT+GGG - chr4_2:20359713-20359732 Msa0593810:intron 40.0%
AAGAAGCAATTGAGAGGCAA+GGG - chr4_2:20359760-20359779 Msa0593810:intron 40.0%
GTCTTGGATCTAGTAAACAG+CGG - chr4_2:20359789-20359808 Msa0593810:intron 40.0%
! TCCTCATCCTGGTAATCTTT+TGG - chr4_2:20359863-20359882 Msa0593810:intron 40.0%
! TAATCTTTTGGCAACACCAG+AGG - chr4_2:20359875-20359894 Msa0593810:intron 40.0%
! AATCTTTTGGCAACACCAGA+GGG - chr4_2:20359876-20359895 Msa0593810:intron 40.0%
! AGAAAAGCAAGTTTTCCCTC+TGG + chr4_2:20359894-20359913 None:intergenic 40.0%
ATTGCAAATCTCGCTTCTTC+TGG + chr4_2:20359942-20359961 None:intergenic 40.0%
TTTCGTAGTGCAGGAACAAT+TGG + chr4_2:20360062-20360081 None:intergenic 40.0%
GCTTAACTTCAAGACGATTG+TGG - chr4_2:20360118-20360137 Msa0593810:intron 40.0%
AACTTCAAGACGATTGTGGA+CGG - chr4_2:20360122-20360141 Msa0593810:intron 40.0%
ATTAAGGTCTCTCACTGTTC+TGG - chr4_2:20360512-20360531 Msa0593810:intron 40.0%
GCAGCAAGCACCTTAAAATT+GGG + chr4_2:20360561-20360580 None:intergenic 40.0%
TGCAGCAAGCACCTTAAAAT+TGG + chr4_2:20360562-20360581 None:intergenic 40.0%
CAACGGATAAAATGGAAAGG+AGG + chr4_2:20360748-20360767 None:intergenic 40.0%
! TTTTCCGATGCAGATGGAAT+AGG - chr4_2:20361012-20361031 Msa0593810:intron 40.0%
!! GCTTGAAAACCTTCTAGTTC+AGG - chr4_2:20361034-20361053 Msa0593810:intron 40.0%
!! AAGGTATTGTTGAGTCCTGA+TGG - chr4_2:20361107-20361126 Msa0593810:intron 40.0%
GCACAATTTCCGAAACATAC+CGG - chr4_2:20361192-20361211 Msa0593810:intron 40.0%
AGGAACATACCGGTATGTTT+CGG + chr4_2:20361204-20361223 None:intergenic 40.0%
! GGTATGTTCCTGACTTTTTG+AGG - chr4_2:20361213-20361232 Msa0593810:intron 40.0%
ACAAGGTTCCTCAAAAAGTC+AGG + chr4_2:20361224-20361243 None:intergenic 40.0%
TTGAGGAACCTTGTCTTCAA+TGG - chr4_2:20361230-20361249 Msa0593810:intron 40.0%
TTGCATTGCCATTGAAGACA+AGG + chr4_2:20361241-20361260 None:intergenic 40.0%
TGTCTTCAATGGCAATGCAA+AGG - chr4_2:20361241-20361260 Msa0593810:intron 40.0%
AGCTCAGAGATCAAGTGATT+AGG - chr4_2:20361306-20361325 Msa0593810:intron 40.0%
!! AGTATCGGTAGCAAAAGAGA+TGG + chr4_2:20361368-20361387 None:intergenic 40.0%
! TCTTTTGCTACCGATACTAC+AGG - chr4_2:20361370-20361389 Msa0593810:intron 40.0%
GGTAAAGACACAAGACAGAA+CGG + chr4_2:20361442-20361461 None:intergenic 40.0%
GCACCAAAACTTCAGATTGA+AGG + chr4_2:20361463-20361482 None:intergenic 40.0%
!! TCCTTAGTTAAAAGGCGCTT+CGG - chr4_2:20361776-20361795 Msa0593810:intron 40.0%
CATAGATTGTGTCACAGCAA+AGG - chr4_2:20362296-20362315 Msa0593810:intron 40.0%
! TTTTGCAATGGCGTCGTTAT+AGG - chr4_2:20362421-20362440 Msa0593810:intron 40.0%
TCCCTACAAATACCTACAGA+GGG - chr4_2:20362657-20362676 Msa0593810:intron 40.0%
TCCCTCTGTAGGTATTTGTA+GGG + chr4_2:20362661-20362680 None:intergenic 40.0%
TCAACTTGCATTTGGCCATT+TGG - chr4_2:20363193-20363212 Msa0593810:exon 40.0%
CAACTTGCATTTGGCCATTT+GGG - chr4_2:20363194-20363213 Msa0593810:exon 40.0%
CTCAACAACCCATTTCTCCA+TGG - chr4_2:20356023-20356042 Msa0593810:three_prime_UTR 45.0%
CCCATTTCTCCATGGATTCA+TGG - chr4_2:20356031-20356050 Msa0593810:three_prime_UTR 45.0%
GCCATGAATCCATGGAGAAA+TGG + chr4_2:20356035-20356054 None:intergenic 45.0%
GGAATTGAGCCATGAATCCA+TGG + chr4_2:20356043-20356062 None:intergenic 45.0%
!! TTCACAGTTTCGTGCTGCTT+TGG - chr4_2:20356120-20356139 Msa0593810:three_prime_UTR 45.0%
GCCTTAAGGGAACCATCTTT+AGG + chr4_2:20356193-20356212 None:intergenic 45.0%
! TGGAAGTGCAAGAGCCTTAA+GGG + chr4_2:20356206-20356225 None:intergenic 45.0%
! TTGGAAGTGCAAGAGCCTTA+AGG + chr4_2:20356207-20356226 None:intergenic 45.0%
TAAGGCTCTTGCACTTCCAA+TGG - chr4_2:20356207-20356226 Msa0593810:three_prime_UTR 45.0%
ATATCATCAGCACGGTCCAT+TGG + chr4_2:20356226-20356245 None:intergenic 45.0%
TCATGCTGAGGCAAAAGCTT+TGG - chr4_2:20356246-20356265 Msa0593810:three_prime_UTR 45.0%
ACATGTGTTGGACACTGACA+CGG - chr4_2:20356545-20356564 Msa0593810:three_prime_UTR 45.0%
CATAAGTGTCTGTGCTACAG+AGG - chr4_2:20356593-20356612 Msa0593810:three_prime_UTR 45.0%
ATGTTGGACACTAGCATGGA+TGG - chr4_2:20356741-20356760 Msa0593810:three_prime_UTR 45.0%
!!! GGTTTTGTTGTGTAGGTTGC+GGG - chr4_2:20356946-20356965 Msa0593810:CDS 45.0%
! CTTTTGTGGGAGCAGAGAAA+TGG - chr4_2:20357015-20357034 Msa0593810:intron 45.0%
! GGATTCGTGCTATTGAGCTT+AGG - chr4_2:20357058-20357077 Msa0593810:intron 45.0%
TTGTCCATCTGAGTATCTCG+AGG - chr4_2:20357149-20357168 Msa0593810:intron 45.0%
!! ATGTCTGGTTCCACTTTTCG+AGG - chr4_2:20357289-20357308 Msa0593810:intron 45.0%
!! AAAATCATGGTGTCACACCG+TGG - chr4_2:20357873-20357892 Msa0593810:CDS 45.0%
GTTTGGATTCAAGGTGAGCT+TGG + chr4_2:20357904-20357923 None:intergenic 45.0%
GTGGGGATTCCTCATGTATA+CGG + chr4_2:20358151-20358170 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + chr4_2:20358168-20358187 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + chr4_2:20358170-20358189 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG - chr4_2:20358168-20358187 Msa0593810:intron 45.0%
GTTTGCACCACCTTTATTGC+AGG - chr4_2:20358230-20358249 Msa0593810:intron 45.0%
!!! TTTTTTGAGGCCCATCCTTG+GGG - chr4_2:20358294-20358313 Msa0593810:intron 45.0%
AGACCTCATCTCCTGTATTG+CGG - chr4_2:20358438-20358457 Msa0593810:intron 45.0%
GTGCTTTACCTTTACCAGGA+TGG - chr4_2:20358644-20358663 Msa0593810:CDS 45.0%
TTGGCAAACCATCCTGGTAA+AGG + chr4_2:20358655-20358674 None:intergenic 45.0%
GAAATGTTGGCAAACCATCC+TGG + chr4_2:20358661-20358680 None:intergenic 45.0%
TTTGCCAACATTTCCTGACG+AGG - chr4_2:20358667-20358686 Msa0593810:CDS 45.0%
ACGCCTTTGAATGCATTGAG+AGG - chr4_2:20358690-20358709 Msa0593810:intron 45.0%
CGCCTTTGAATGCATTGAGA+GGG - chr4_2:20358691-20358710 Msa0593810:intron 45.0%
TATCGGCGATGGAGATATTG+TGG + chr4_2:20358747-20358766 None:intergenic 45.0%
CCTAAACTAGCAGCAGCTAT+CGG + chr4_2:20358764-20358783 None:intergenic 45.0%
CCTATAGCTTCTTCAATGCC+AGG + chr4_2:20358848-20358867 None:intergenic 45.0%
! CCTGGCATTGAAGAAGCTAT+AGG - chr4_2:20358845-20358864 Msa0593810:intron 45.0%
! GTAGGTGTTGTACCAGAACA+GGG + chr4_2:20359300-20359319 None:intergenic 45.0%
! TGTAGGTGTTGTACCAGAAC+AGG + chr4_2:20359301-20359320 None:intergenic 45.0%
ACCTAAAGCGGACAATACCT+CGG - chr4_2:20359374-20359393 Msa0593810:CDS 45.0%
TTGGGACTATACAAGTGCGA+AGG - chr4_2:20359695-20359714 Msa0593810:intron 45.0%
!! CGAAGGTACTAACGATCGAT+TGG - chr4_2:20359712-20359731 Msa0593810:intron 45.0%
CAAGAAGCAATTGAGAGGCA+AGG - chr4_2:20359759-20359778 Msa0593810:intron 45.0%
GCCAAAAGATTACCAGGATG+AGG + chr4_2:20359867-20359886 None:intergenic 45.0%
! GGTGTTGCCAAAAGATTACC+AGG + chr4_2:20359873-20359892 None:intergenic 45.0%
TAACCGAGACTACGAAGCTA+TGG - chr4_2:20359986-20360005 Msa0593810:intron 45.0%
! GCACCGACACTTTAGATTGA+AGG + chr4_2:20360358-20360377 None:intergenic 45.0%
ATGCTGGAACTGCAAACAGA+TGG + chr4_2:20360479-20360498 None:intergenic 45.0%
CAAGCCTATTCCATCTGCAT+CGG + chr4_2:20361019-20361038 None:intergenic 45.0%
! CTTTTCTCCCCTGAACTAGA+AGG + chr4_2:20361046-20361065 None:intergenic 45.0%
TACCTTCAGGACAGGTTGTA+AGG + chr4_2:20361093-20361112 None:intergenic 45.0%
CTCAACAATACCTTCAGGAC+AGG + chr4_2:20361101-20361120 None:intergenic 45.0%
CAGGACTCAACAATACCTTC+AGG + chr4_2:20361106-20361125 None:intergenic 45.0%
TTCCTCAGAACTTCACCATC+AGG + chr4_2:20361125-20361144 None:intergenic 45.0%
AAAGCAGTGCAGCAAACTTG+AGG + chr4_2:20361709-20361728 None:intergenic 45.0%
!!! TTTGCTGCACTGCTTTTTCG+AGG - chr4_2:20361713-20361732 Msa0593810:intron 45.0%
TTTCGAGGATTGTCTGCTTC+AGG - chr4_2:20361728-20361747 Msa0593810:intron 45.0%
!! ACCGAAGCGCCTTTTAACTA+AGG + chr4_2:20361780-20361799 None:intergenic 45.0%
!! TTAGTTAAAAGGCGCTTCGG+TGG - chr4_2:20361779-20361798 Msa0593810:intron 45.0%
!! TAGTTAAAAGGCGCTTCGGT+GGG - chr4_2:20361780-20361799 Msa0593810:intron 45.0%
TTGTCTGGGAAACGAGTCTA+AGG + chr4_2:20361833-20361852 None:intergenic 45.0%
GTATTGGAACAGTATCCCTG+CGG - chr4_2:20361869-20361888 Msa0593810:intron 45.0%
ATCCTTACTGATCCGGACAA+GGG + chr4_2:20361950-20361969 None:intergenic 45.0%
CAAGGTCATCCTTACTGATC+CGG + chr4_2:20361957-20361976 None:intergenic 45.0%
TGTGTCACAGCAAAGGCTAA+AGG - chr4_2:20362303-20362322 Msa0593810:intron 45.0%
GTCCCTACAAATACCTACAG+AGG - chr4_2:20362656-20362675 Msa0593810:intron 45.0%
GTCCCTCTGTAGGTATTTGT+AGG + chr4_2:20362662-20362681 None:intergenic 45.0%
ATATCACCAATACGAGGGAC+TGG - chr4_2:20362723-20362742 Msa0593810:intron 45.0%
ATCAATCCAGTCCCTCGTAT+TGG + chr4_2:20362732-20362751 None:intergenic 45.0%
TGTTGGACACTGACACGGAT+AGG - chr4_2:20356550-20356569 Msa0593810:three_prime_UTR 50.0%
TTGTTGTGTAGGTTGCGGGA+AGG - chr4_2:20356950-20356969 Msa0593810:CDS 50.0%
TGTTGTGTAGGTTGCGGGAA+GGG - chr4_2:20356951-20356970 Msa0593810:CDS 50.0%
AGCTCCTCGAGATACTCAGA+TGG + chr4_2:20357156-20357175 None:intergenic 50.0%
!! CTGGTTCCACTTTTCGAGGA+AGG - chr4_2:20357293-20357312 Msa0593810:intron 50.0%
!! TCGGCTCTGGGAATGAAAAG+AGG - chr4_2:20358009-20358028 Msa0593810:CDS 50.0%
!!! TTTTTGAGGCCCATCCTTGG+GGG - chr4_2:20358295-20358314 Msa0593810:intron 50.0%
CGCAATATAAAGGTCAGGGC+CGG + chr4_2:20358359-20358378 None:intergenic 50.0%
CGGCCCTGACCTTTATATTG+CGG - chr4_2:20358357-20358376 Msa0593810:intron 50.0%
AGGAGATGAGGTCTCCACAA+CGG + chr4_2:20358432-20358451 None:intergenic 50.0%
TGACCGCAATACAGGAGATG+AGG + chr4_2:20358444-20358463 None:intergenic 50.0%
! CCGATAGCTGCTGCTAGTTT+AGG - chr4_2:20358761-20358780 Msa0593810:intron 50.0%
! AGCTGCTGCTAGTTTAGGTC+AGG - chr4_2:20358766-20358785 Msa0593810:intron 50.0%
TAAAGCTCGGTTGAAGCGGT+CGG - chr4_2:20358793-20358812 Msa0593810:intron 50.0%
!! CTCATTGGGTTGAGGAGTGT+AGG + chr4_2:20359318-20359337 None:intergenic 50.0%
CTACACTCCTCAACCCAATG+AGG - chr4_2:20359316-20359335 Msa0593810:CDS 50.0%
! AAAGACGCCTCATTGGGTTG+AGG + chr4_2:20359326-20359345 None:intergenic 50.0%
!! TCCGAGGTATTGTCCGCTTT+AGG + chr4_2:20359378-20359397 None:intergenic 50.0%
! TTTTGACAGGTTCCTGCAGG+AGG - chr4_2:20359605-20359624 Msa0593810:intron 50.0%
TTTGACAGGTTCCTGCAGGA+GGG - chr4_2:20359606-20359625 Msa0593810:intron 50.0%
! TTGCATTTTGTCCCTCCTGC+AGG + chr4_2:20359620-20359639 None:intergenic 50.0%
TGCAGGAGGGACAAAATGCA+AGG - chr4_2:20359619-20359638 Msa0593810:intron 50.0%
CTAACGATCGATTGGGTCGA+AGG - chr4_2:20359720-20359739 Msa0593810:intron 50.0%
CTCAGACAACTGCTCGAGTA+CGG - chr4_2:20359825-20359844 Msa0593810:intron 50.0%
TTCCATGCAGATCCTCATCC+TGG - chr4_2:20359852-20359871 Msa0593810:intron 50.0%
TACCAGGATGAGGATCTGCA+TGG + chr4_2:20359857-20359876 None:intergenic 50.0%
GAGCCATAGCTTCGTAGTCT+CGG + chr4_2:20359992-20360011 None:intergenic 50.0%
AAGACGATTGTGGACGGTCT+CGG - chr4_2:20360128-20360147 Msa0593810:intron 50.0%
CGATGCTGACATTGACACAC+AGG - chr4_2:20360287-20360306 Msa0593810:CDS 50.0%
! AGGTCTCTCACTGTTCTGGA+AGG - chr4_2:20360516-20360535 Msa0593810:intron 50.0%
! GTCCTGATGGTGAAGTTCTG+AGG - chr4_2:20361120-20361139 Msa0593810:intron 50.0%
GAGGCTAAGGAGTTAGAGGA+TGG - chr4_2:20361894-20361913 Msa0593810:intron 50.0%
TCCTTACTGATCCGGACAAG+GGG + chr4_2:20361949-20361968 None:intergenic 50.0%
CATCCTTACTGATCCGGACA+AGG + chr4_2:20361951-20361970 None:intergenic 50.0%
AACCTGAGGCCCGTAAACTT+GGG - chr4_2:20362191-20362210 Msa0593810:CDS 50.0%
TGGGTCAAGGGCTGTCTACT+AGG - chr4_2:20357118-20357137 Msa0593810:intron 55.0%
AGGTGAGCTTGGCTGAACCA+CGG + chr4_2:20357893-20357912 None:intergenic 55.0%
AGCCTCCGAATTCTCAGGGA+CGG + chr4_2:20357990-20358009 None:intergenic 55.0%
TCCCTGAGAATTCGGAGGCT+CGG - chr4_2:20357990-20358009 Msa0593810:CDS 55.0%
TGCAAACAGCTCAACCGAGC+TGG + chr4_2:20358325-20358344 None:intergenic 55.0%
GCGTCCTCGTCAGGAAATGT+TGG + chr4_2:20358674-20358693 None:intergenic 55.0%
!! CATTCAAAGGCGTCCTCGTC+AGG + chr4_2:20358683-20358702 None:intergenic 55.0%
AAAGCTCGGTTGAAGCGGTC+GGG - chr4_2:20358794-20358813 Msa0593810:intron 55.0%
GGGCAAAGTTGTTGCGGTCA+AGG - chr4_2:20358814-20358833 Msa0593810:intron 55.0%
CTTCTTCAATGCCAGGGCGT+TGG + chr4_2:20358841-20358860 None:intergenic 55.0%
GCGGACAATACCTCGGAATG+CGG - chr4_2:20359381-20359400 Msa0593810:CDS 55.0%
CAATACCTCGGAATGCGGTG+TGG - chr4_2:20359386-20359405 Msa0593810:CDS 55.0%
AATGCGGTGTGGCGTACTTG+AGG - chr4_2:20359397-20359416 Msa0593810:CDS 55.0%
GAGGCAAGGGCTTAACGTCT+TGG - chr4_2:20359773-20359792 Msa0593810:intron 55.0%
GGCCTTACAACCTGTCCTGA+AGG - chr4_2:20361088-20361107 Msa0593810:intron 55.0%
GGTCGAGGCTAAGGAGTTAG+AGG - chr4_2:20361890-20361909 Msa0593810:intron 55.0%
TTAGCCCACGTGTGTGGCTT+AGG - chr4_2:20361921-20361940 Msa0593810:intron 55.0%
CTTACTGATCCGGACAAGGG+GGG + chr4_2:20361947-20361966 None:intergenic 55.0%
CCTTACTGATCCGGACAAGG+GGG + chr4_2:20361948-20361967 None:intergenic 55.0%
ACAGGTGCTTCAGCAACCTG+AGG - chr4_2:20362177-20362196 Msa0593810:CDS 55.0%
CAACCTGAGGCCCGTAAACT+TGG - chr4_2:20362190-20362209 Msa0593810:CDS 55.0%
ACCTGAGGCCCGTAAACTTG+GGG - chr4_2:20362192-20362211 Msa0593810:CDS 55.0%
AACACGCCCCCCAAGTTTAC+GGG + chr4_2:20362203-20362222 None:intergenic 55.0%
CAACACGCCCCCCAAGTTTA+CGG + chr4_2:20362204-20362223 None:intergenic 55.0%
! AAACTTGGGGGGCGTGTTGT+CGG - chr4_2:20362205-20362224 Msa0593810:CDS 55.0%
CTCAGGGACGGCCCTGATAA+AGG + chr4_2:20357978-20357997 None:intergenic 60.0%
CAGGGCCGTCCCTGAGAATT+CGG - chr4_2:20357982-20358001 Msa0593810:CDS 60.0%
GCCGAGCCTCCGAATTCTCA+GGG + chr4_2:20357994-20358013 None:intergenic 60.0%
AGCCGAGCCTCCGAATTCTC+AGG + chr4_2:20357995-20358014 None:intergenic 60.0%
AGAATTCGGAGGCTCGGCTC+TGG - chr4_2:20357996-20358015 Msa0593810:CDS 60.0%
GAATTCGGAGGCTCGGCTCT+GGG - chr4_2:20357997-20358016 Msa0593810:CDS 60.0%
GAGCTGTTTGCACCCCCTCA+AGG - chr4_2:20358333-20358352 Msa0593810:intron 60.0%
TGTTTGCACCCCCTCAAGGC+CGG - chr4_2:20358337-20358356 Msa0593810:intron 60.0%
TTGCGGCTGTGATGCCGTTG+TGG - chr4_2:20358415-20358434 Msa0593810:intron 60.0%
CTAGCAGCAGCTATCGGCGA+TGG + chr4_2:20358758-20358777 None:intergenic 60.0%
GCGGTCGGGCAAAGTTGTTG+CGG - chr4_2:20358808-20358827 Msa0593810:intron 60.0%
CGGTGTGGCGTACTTGAGGA+TGG - chr4_2:20359401-20359420 Msa0593810:CDS 60.0%
GAACAGTATCCCTGCGGTCG+AGG - chr4_2:20361875-20361894 Msa0593810:intron 60.0%
TATCCCTGCGGTCGAGGCTA+AGG - chr4_2:20361881-20361900 Msa0593810:intron 60.0%
ACTCCTTAGCCTCGACCGCA+GGG + chr4_2:20361887-20361906 None:intergenic 60.0%
AACTCCTTAGCCTCGACCGC+AGG + chr4_2:20361888-20361907 None:intergenic 60.0%
! AGCCACACACGTGGGCTAAC+AGG + chr4_2:20361920-20361939 None:intergenic 60.0%
CCCCCTTGTCCGGATCAGTA+AGG - chr4_2:20361945-20361964 Msa0593810:intron 60.0%
CCTGAGGCCCGTAAACTTGG+GGG - chr4_2:20362193-20362212 Msa0593810:CDS 60.0%
CTGAGGCCCGTAAACTTGGG+GGG - chr4_2:20362194-20362213 Msa0593810:CDS 60.0%
GGCCGTCCCTGAGAATTCGG+AGG - chr4_2:20357985-20358004 Msa0593810:CDS 65.0%
TTGAGGCCCATCCTTGGGGG+AGG - chr4_2:20358298-20358317 Msa0593810:intron 65.0%
GCTGGACCTCCCCCAAGGAT+GGG + chr4_2:20358307-20358326 None:intergenic 65.0%
AGCTGGACCTCCCCCAAGGA+TGG + chr4_2:20358308-20358327 None:intergenic 65.0%
TCCTTGGGGGAGGTCCAGCT+CGG - chr4_2:20358308-20358327 Msa0593810:intron 65.0%
AAGGTCAGGGCCGGCCTTGA+GGG + chr4_2:20358350-20358369 None:intergenic 65.0%
AAAGGTCAGGGCCGGCCTTG+AGG + chr4_2:20358351-20358370 None:intergenic 65.0%
GTACGCCACACCGCATTCCG+AGG + chr4_2:20359394-20359413 None:intergenic 65.0%
GGCCTGTTAGCCCACGTGTG+TGG - chr4_2:20361915-20361934 Msa0593810:intron 65.0%
GGGGCCTAAGCCACACACGT+GGG + chr4_2:20361928-20361947 None:intergenic 65.0%
TGGCTTAGGCCCCCCTTGTC+CGG - chr4_2:20361935-20361954 Msa0593810:intron 65.0%
CCCCCAAGTTTACGGGCCTC+AGG + chr4_2:20362196-20362215 None:intergenic 65.0%
ACCGAGCTGGACCTCCCCCA+AGG + chr4_2:20358312-20358331 None:intergenic 70.0%
AGGTCAGGGCCGGCCTTGAG+GGG + chr4_2:20358349-20358368 None:intergenic 70.0%
GCGGTCAAGGTCCAACGCCC+TGG - chr4_2:20358827-20358846 Msa0593810:intron 70.0%
GGGGGCCTAAGCCACACACG+TGG + chr4_2:20361929-20361948 None:intergenic 70.0%
! CTTGGGGGGCGTGTTGTCGG+TGG - chr4_2:20362208-20362227 Msa0593810:CDS 70.0%
GGTCAGGGCCGGCCTTGAGG+GGG + chr4_2:20358348-20358367 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 20355856 20363335 20355856 ID=Msa0593810;Name=Msa0593810
chr4_2 mRNA 20355856 20363335 20355856 ID=Msa0593810-mRNA-1;Parent=Msa0593810;Name=Msa0593810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=136|0.85|0.87|1|0.85|0.75|8|1001|713
chr4_2 exon 20355856 20356315 20355856 ID=Msa0593810-mRNA-1:exon:5798;Parent=Msa0593810-mRNA-1
chr4_2 exon 20356350 20357010 20356350 ID=Msa0593810-mRNA-1:exon:5797;Parent=Msa0593810-mRNA-1
chr4_2 exon 20357800 20358166 20357800 ID=Msa0593810-mRNA-1:exon:5796;Parent=Msa0593810-mRNA-1
chr4_2 exon 20358515 20358701 20358515 ID=Msa0593810-mRNA-1:exon:5795;Parent=Msa0593810-mRNA-1
chr4_2 exon 20359012 20359567 20359012 ID=Msa0593810-mRNA-1:exon:5794;Parent=Msa0593810-mRNA-1
chr4_2 exon 20360194 20360529 20360194 ID=Msa0593810-mRNA-1:exon:5793;Parent=Msa0593810-mRNA-1
chr4_2 exon 20362003 20362230 20362003 ID=Msa0593810-mRNA-1:exon:5792;Parent=Msa0593810-mRNA-1
chr4_2 exon 20362852 20363335 20362852 ID=Msa0593810-mRNA-1:exon:5791;Parent=Msa0593810-mRNA-1
chr4_2 five_prime_UTR 20363200 20363335 20363200 ID=Msa0593810-mRNA-1:five_prime_utr;Parent=Msa0593810-mRNA-1
chr4_2 CDS 20362852 20363199 20362852 ID=Msa0593810-mRNA-1:cds;Parent=Msa0593810-mRNA-1
chr4_2 CDS 20362003 20362230 20362003 ID=Msa0593810-mRNA-1:cds;Parent=Msa0593810-mRNA-1
chr4_2 CDS 20360194 20360529 20360194 ID=Msa0593810-mRNA-1:cds;Parent=Msa0593810-mRNA-1
chr4_2 CDS 20359012 20359567 20359012 ID=Msa0593810-mRNA-1:cds;Parent=Msa0593810-mRNA-1
chr4_2 CDS 20358515 20358701 20358515 ID=Msa0593810-mRNA-1:cds;Parent=Msa0593810-mRNA-1
chr4_2 CDS 20357800 20358166 20357800 ID=Msa0593810-mRNA-1:cds;Parent=Msa0593810-mRNA-1
chr4_2 CDS 20356891 20357010 20356891 ID=Msa0593810-mRNA-1:cds;Parent=Msa0593810-mRNA-1
chr4_2 three_prime_UTR 20356350 20356890 20356350 ID=Msa0593810-mRNA-1:three_prime_utr;Parent=Msa0593810-mRNA-1
chr4_2 three_prime_UTR 20355856 20356315 20355856 ID=Msa0593810-mRNA-1:three_prime_utr;Parent=Msa0593810-mRNA-1
Gene Sequence

>Msa0593810

ATGGTAACTATGTTACCTTCTTCCACCATAACTCAACAACCCATTTCTCCATGGATTCATGGCTCAATTCCCATTTCAAATCTCACCTCATCACTCTCTTTCAAATCAAGAAAATTAACCTTATTGAATTCACAGTTTCGTGCTGCTTTGGTTGAAGCAAAACCATCATCACAAAGTTCAGTTTCTTTATCAACATCACCTAAAGATGGTTCCCTTAAGGCTCTTGCACTTCCAATGGACCGTGCTGATGATATTCATGCTGAGGCAAAAGCTTTGGCTCGTGCTGTTAATGCTTCTGTTTATAGTCCTCAACTTGTTGCTTCAAGATATGGTTCTAAACCCTTCAAGGTTGCGGGAAGGGCATTTCAGATTGTGTTTAATTTGGGTTCATTTGGGTTGAAGCTTTTGTGGGAGCAGAGAAATGGAGTTGCTGATCAGAATAAAAGGATTCGTGCTATTGAGCTTAGGAATATATTCACTAAGCTTGGACCAACTTTTGTCAAATTGGGTCAAGGGCTGTCTACTAGGCCTGATATTTGTCCATCTGAGTATCTCGAGGAGCTTTCTGAACTTCAAGATGGTTTGCCAACATTTCCTGACGAGGACGCCTTTGAATGCATTGAGAGGGAATTAGGTTTATCTCTCGACTCTATTTTCTCCACAATATCTCCATCGCCGATAGCTGCTGCTAGTTTAGGTCAGGTTTATAAAGCTCGGTTGAAGCGGTCGGGCAAAGTTGTTGCGGTCAAGGTCCAACGCCCTGGCATTGAAGAAGCTATAGGATTGGACTTCTACCTCATTAGAGGTTTAGGGTTTCTAATAAATAAATATGTGGATCGAATCACAACTGATGTTGTTGCACTTATTGATGAGTTCGCATGTAGAGTCTTTCAAGAGCTTAATTATGTGCAGGAGGGACAAAATGCAAGGAAATTCAAAAAATTGTATGCTGACAAGGAAGATATCTTAGTTCCTGATGTTTTTTGGGACTATACAAGTGCGAAGGTACTAACGATCGATTGGGTCGAAGGAGTAAAACTAAATGATCAAGAAGCAATTGAGAGGCAAGGGCTTAACGTCTTGGATCTAGTAAACAGCGGAATACAGTGCAGTCTCAGACAACTGCTCGAGTACGGATATTTCCATGCAGATCCTCATCCTGGTAATCTTTTGGCAACACCAGAGGGAAAACTTGCTTTTCTTGATTTCGGGATGATGAGTGAGACTCCAGAAGAAGCGAGATTTGCAATAATTGGTCACGTTGTTCACTTAGTTAACCGAGACTACGAAGCTATGGCTCAAGACTATTATGCTCTTGATTTCTTATCTAGGGATATTGATGTATCTCCAATTGTTCCTGCACTACGAAACTTTTTTGACGATGCACTTAATTATACTGTTAGCGAGCTTAACTTCAAGACGATTGTGGACGGTCTCGGAAATGTTTTGTATCAATATCCATTTAATGTTCCAGCATACTATGCGTTGATATTAAGGTCTCTCACTGTTCTGGAAGGTTTAGCACTATATGCTGATCCCAATTTTAAGGTGCTTGCTGCATCATATCCCTATTTTGCTAAAAGGCTTCTAACGGATCCAAATCCATATCTAAGAGATGCTCTGATTGAGTTGCTTTTCAAGGATGGAAAGTTCAGATGGAATAGGCTTGAAAACCTTCTAGTTCAGGGGAGAAAAGATAGAGATTTCTCTGCTAAAGAGGCCTTACAACCTGTCCTGAAGGTATTGTTGAGTCCTGATGGTGAAGTTCTGAGGAATCTAGTTATCAAAGAAGCTATTCGTGTATCTGAAGCTTTTACTCTCGGCACAATTTCCGAAACATACCGGTATGTTCCTGACTTTTTGAGGAACCTTGTCTTCAATGGCAATGCAAAGGATCCACTTATGATGTCAGAAACTGAAAGGCAAAGCATCATAGAGCTCAGAGATCAAGTGATTAGGATATGGAGACTTCTGCAATCATCTAATGATTTTGATCCATCTCTTTTGCTACCGATACTACAGGTGCTTCAGCAACCTGAGGCCCGTAAACTTGGGGGGCGTGTTGTCGGTGGAATCACTCAACGACTTGCAGCACGCTTTCTTATGCAATTACTTGGAGCACCAAAAACAACATCTACATAG
Protein sequence

>Msa0593810

MVTMLPSSTITQQPISPWIHGSIPISNLTSSLSFKSRKLTLLNSQFRAALVEAKPSSQSSVSLSTSPKDGSLKALALPMDRADDIHAEAKALARAVNASVYSPQLVASRYGSKPFKVAGRAFQIVFNLGSFGLKLLWEQRNGVADQNKRIRAIELRNIFTKLGPTFVKLGQGLSTRPDICPSEYLEELSELQDGLPTFPDEDAFECIERELGLSLDSIFSTISPSPIAAASLGQVYKARLKRSGKVVAVKVQRPGIEEAIGLDFYLIRGLGFLINKYVDRITTDVVALIDEFACRVFQELNYVQEGQNARKFKKLYADKEDILVPDVFWDYTSAKVLTIDWVEGVKLNDQEAIERQGLNVLDLVNSGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMAQDYYALDFLSRDIDVSPIVPALRNFFDDALNYTVSELNFKTIVDGLGNVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNRLENLLVQGRKDRDFSAKEALQPVLKVLLSPDGEVLRNLVIKEAIRVSEAFTLGTISETYRYVPDFLRNLVFNGNAKDPLMMSETERQSIIELRDQVIRIWRLLQSSNDFDPSLLLPILQVLQQPEARKLGGRVVGGITQRLAARFLMQLLGAPKTTST*