Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006050 | Msa1466350 | 0.810461 | 1.139412e-50 | -8.615850e-47 |
| Msa0012380 | Msa1466350 | 0.828554 | 8.426237e-55 | -8.615850e-47 |
| Msa0014410 | Msa1466350 | 0.847823 | 9.060966e-60 | -8.615850e-47 |
| Msa0037270 | Msa1466350 | 0.802135 | 6.477969e-49 | -8.615850e-47 |
| Msa0040550 | Msa1466350 | -0.810622 | 1.051741e-50 | -8.615850e-47 |
| Msa0044180 | Msa1466350 | 0.837556 | 4.847371e-57 | -8.615850e-47 |
| Msa0064550 | Msa1466350 | 0.866013 | 3.888429e-65 | -8.615850e-47 |
| Msa0072830 | Msa1466350 | 0.821393 | 4.134885e-53 | -8.615850e-47 |
| Msa0072860 | Msa1466350 | 0.826978 | 2.016269e-54 | -8.615850e-47 |
| Msa0090860 | Msa1466350 | 0.832362 | 9.869385e-56 | -8.615850e-47 |
| Msa0101170 | Msa1466350 | -0.843570 | 1.291774e-58 | -8.615850e-47 |
| Msa0103160 | Msa1466350 | 0.817848 | 2.665827e-52 | -8.615850e-47 |
| Msa0107460 | Msa1466350 | 0.803913 | 2.778473e-49 | -8.615850e-47 |
| Msa0108070 | Msa1466350 | 0.816258 | 6.067924e-52 | -8.615850e-47 |
| Msa0109490 | Msa1466350 | 0.854116 | 1.524712e-61 | -8.615850e-47 |
| Msa0116200 | Msa1466350 | 0.808072 | 3.706898e-50 | -8.615850e-47 |
| Msa1349360 | Msa1466350 | 0.811750 | 5.987170e-51 | -8.615850e-47 |
| Msa1349810 | Msa1466350 | 0.881694 | 1.940346e-70 | -8.615850e-47 |
| Msa1354090 | Msa1466350 | 0.856316 | 3.493346e-62 | -8.615850e-47 |
| Msa1358340 | Msa1466350 | 0.884958 | 1.228734e-71 | -8.615850e-47 |
| Msa1359890 | Msa1466350 | 0.847791 | 9.249288e-60 | -8.615850e-47 |
| Msa1369180 | Msa1466350 | 0.832402 | 9.650147e-56 | -8.615850e-47 |
| Msa1375780 | Msa1466350 | 0.833479 | 5.208193e-56 | -8.615850e-47 |
| Msa1378470 | Msa1466350 | 0.828504 | 8.667166e-55 | -8.615850e-47 |
| Msa1384620 | Msa1466350 | 0.807853 | 4.127035e-50 | -8.615850e-47 |
| Msa1394900 | Msa1466350 | 0.843044 | 1.785015e-58 | -8.615850e-47 |
| Msa1395580 | Msa1466350 | 0.811445 | 6.977724e-51 | -8.615850e-47 |
| Msa1404690 | Msa1466350 | 0.801535 | 8.600895e-49 | -8.615850e-47 |
| Msa1405380 | Msa1466350 | 0.845484 | 3.946049e-59 | -8.615850e-47 |
| Msa1406020 | Msa1466350 | 0.804906 | 1.725333e-49 | -8.615850e-47 |
| Msa1413900 | Msa1466350 | 0.800784 | 1.225039e-48 | -8.615850e-47 |
| Msa1423190 | Msa1466350 | 0.806910 | 6.539735e-50 | -8.615850e-47 |
| Msa1431730 | Msa1466350 | 0.815458 | 9.150684e-52 | -8.615850e-47 |
| Msa1434660 | Msa1466350 | 0.872164 | 3.923945e-67 | -8.615850e-47 |
| Msa1450630 | Msa1466350 | 0.803098 | 4.099243e-49 | -8.615850e-47 |
| Msa1459540 | Msa1466350 | 0.841715 | 4.015229e-58 | -8.615850e-47 |
| Msa1462600 | Msa1466350 | 0.812156 | 4.885939e-51 | -8.615850e-47 |
| Msa1466130 | Msa1466350 | -0.816656 | 4.941249e-52 | -8.615850e-47 |
| Msa0604880 | Msa1466350 | 0.858196 | 9.724911e-63 | -8.615850e-47 |
| Msa0605250 | Msa1466350 | 0.862504 | 4.834789e-64 | -8.615850e-47 |
| Msa0609790 | Msa1466350 | 0.846119 | 2.653476e-59 | -8.615850e-47 |
| Msa0622250 | Msa1466350 | 0.880438 | 5.490726e-70 | -8.615850e-47 |
| Msa0627050 | Msa1466350 | 0.866359 | 3.021615e-65 | -8.615850e-47 |
| Msa0636720 | Msa1466350 | 0.826990 | 2.002887e-54 | -8.615850e-47 |
| Msa0644630 | Msa1466350 | 0.820931 | 5.284755e-53 | -8.615850e-47 |
| Msa0646190 | Msa1466350 | 0.841919 | 3.546989e-58 | -8.615850e-47 |
| Msa0649310 | Msa1466350 | 0.821979 | 3.026877e-53 | -8.615850e-47 |
| Msa0676100 | Msa1466350 | 0.805146 | 1.537003e-49 | -8.615850e-47 |
| Msa0679780 | Msa1466350 | 0.861450 | 1.017626e-63 | -8.615850e-47 |
| Msa0681210 | Msa1466350 | 0.801810 | 7.554826e-49 | -8.615850e-47 |
| Msa0690720 | Msa1466350 | 0.815797 | 7.690627e-52 | -8.615850e-47 |
| Msa0692420 | Msa1466350 | 0.808184 | 3.508970e-50 | -8.615850e-47 |
| Msa0693400 | Msa1466350 | 0.825133 | 5.535134e-54 | -8.615850e-47 |
| Msa0705810 | Msa1466350 | 0.821587 | 3.730451e-53 | -8.615850e-47 |
| Msa0740210 | Msa1466350 | 0.802523 | 5.388392e-49 | -8.615850e-47 |
| Msa0742090 | Msa1466350 | 0.817120 | 3.888466e-52 | -8.615850e-47 |
| Msa0748330 | Msa1466350 | 0.879033 | 1.732732e-69 | -8.615850e-47 |
| Msa0748980 | Msa1466350 | 0.804922 | 1.711999e-49 | -8.615850e-47 |
| Msa0750380 | Msa1466350 | 0.807746 | 4.349047e-50 | -8.615850e-47 |
| Msa0772500 | Msa1466350 | 0.809821 | 1.565413e-50 | -8.615850e-47 |
| Msa0780140 | Msa1466350 | 0.807501 | 4.902232e-50 | -8.615850e-47 |
| Msa0781390 | Msa1466350 | 0.817046 | 4.040475e-52 | -8.615850e-47 |
| Msa0790640 | Msa1466350 | 0.849516 | 3.075819e-60 | -8.615850e-47 |
| Msa0793100 | Msa1466350 | 0.853834 | 1.838175e-61 | -8.615850e-47 |
| Msa0794460 | Msa1466350 | 0.829075 | 6.305667e-55 | -8.615850e-47 |
| Msa0806720 | Msa1466350 | 0.819379 | 1.197792e-52 | -8.615850e-47 |
| Msa0806760 | Msa1466350 | 0.812516 | 4.075896e-51 | -8.615850e-47 |
| Msa0813630 | Msa1466350 | 0.821473 | 3.963651e-53 | -8.615850e-47 |
| Msa0818550 | Msa1466350 | 0.816790 | 4.611259e-52 | -8.615850e-47 |
| Msa0824140 | Msa1466350 | 0.801103 | 1.054488e-48 | -8.615850e-47 |
| Msa0825520 | Msa1466350 | 0.806895 | 6.585627e-50 | -8.615850e-47 |
| Msa0830720 | Msa1466350 | 0.817170 | 3.787873e-52 | -8.615850e-47 |
| Msa0138390 | Msa1466350 | -0.817153 | 3.823118e-52 | -8.615850e-47 |
| Msa0140290 | Msa1466350 | 0.848706 | 5.165082e-60 | -8.615850e-47 |
| Msa0154220 | Msa1466350 | 0.844117 | 9.220080e-59 | -8.615850e-47 |
| Msa0154240 | Msa1466350 | 0.845150 | 4.860554e-59 | -8.615850e-47 |
| Msa0154270 | Msa1466350 | 0.869440 | 3.090770e-66 | -8.615850e-47 |
| Msa0155610 | Msa1466350 | 0.834380 | 3.099147e-56 | -8.615850e-47 |
| Msa0171920 | Msa1466350 | 0.827270 | 1.716654e-54 | -8.615850e-47 |
| Msa0183560 | Msa1466350 | 0.825160 | 5.453561e-54 | -8.615850e-47 |
| Msa0197030 | Msa1466350 | 0.817915 | 2.574124e-52 | -8.615850e-47 |
| Msa0198290 | Msa1466350 | 0.801534 | 8.606009e-49 | -8.615850e-47 |
| Msa0199740 | Msa1466350 | 0.808759 | 2.644951e-50 | -8.615850e-47 |
| Msa0200840 | Msa1466350 | 0.807346 | 5.286729e-50 | -8.615850e-47 |
| Msa0212730 | Msa1466350 | 0.851868 | 6.706010e-61 | -8.615850e-47 |
| Msa0216210 | Msa1466350 | 0.813086 | 3.058658e-51 | -8.615850e-47 |
| Msa0218650 | Msa1466350 | -0.803655 | 3.143231e-49 | -8.615850e-47 |
| Msa0218860 | Msa1466350 | 0.827543 | 1.476356e-54 | -8.615850e-47 |
| Msa0224370 | Msa1466350 | 0.819387 | 1.192964e-52 | -8.615850e-47 |
| Msa0224400 | Msa1466350 | 0.828328 | 9.556871e-55 | -8.615850e-47 |
| Msa1226880 | Msa1466350 | 0.837700 | 4.452587e-57 | -8.615850e-47 |
| Msa1228350 | Msa1466350 | 0.851871 | 6.690292e-61 | -8.615850e-47 |
| Msa1228460 | Msa1466350 | 0.822883 | 1.866392e-53 | -8.615850e-47 |
| Msa1229640 | Msa1466350 | 0.810210 | 1.290594e-50 | -8.615850e-47 |
| Msa1232270 | Msa1466350 | 0.815193 | 1.048127e-51 | -8.615850e-47 |
| Msa1239900 | Msa1466350 | 0.818325 | 2.079572e-52 | -8.615850e-47 |
| Msa1248220 | Msa1466350 | 0.827955 | 1.175079e-54 | -8.615850e-47 |
| Msa1255020 | Msa1466350 | 0.829356 | 5.389516e-55 | -8.615850e-47 |
| Msa1263590 | Msa1466350 | 0.807586 | 4.702261e-50 | -8.615850e-47 |
| Msa1263670 | Msa1466350 | 0.805278 | 1.441939e-49 | -8.615850e-47 |
| Msa1270770 | Msa1466350 | 0.800843 | 1.191821e-48 | -8.615850e-47 |
| Msa1272340 | Msa1466350 | 0.818207 | 2.210559e-52 | -8.615850e-47 |
| Msa1281270 | Msa1466350 | 0.833018 | 6.784719e-56 | -8.615850e-47 |
| Msa1295470 | Msa1466350 | 0.823087 | 1.672449e-53 | -8.615850e-47 |
| Msa1306190 | Msa1466350 | 0.833751 | 4.455236e-56 | -8.615850e-47 |
| Msa1306200 | Msa1466350 | 0.822744 | 2.010299e-53 | -8.615850e-47 |
| Msa1310250 | Msa1466350 | 0.817376 | 3.404492e-52 | -8.615850e-47 |
| Msa1317030 | Msa1466350 | 0.810995 | 8.734588e-51 | -8.615850e-47 |
| Msa1320380 | Msa1466350 | 0.841061 | 5.970437e-58 | -8.615850e-47 |
| Msa1326400 | Msa1466350 | 0.837825 | 4.136777e-57 | -8.615850e-47 |
| Msa0369100 | Msa1466350 | 0.824969 | 6.050067e-54 | -8.615850e-47 |
| Msa0370500 | Msa1466350 | -0.832899 | 7.264419e-56 | -8.615850e-47 |
| Msa0373220 | Msa1466350 | 0.832397 | 9.674961e-56 | -8.615850e-47 |
| Msa0378700 | Msa1466350 | 0.807594 | 4.682694e-50 | -8.615850e-47 |
| Msa0380650 | Msa1466350 | 0.818917 | 1.525997e-52 | -8.615850e-47 |
| Msa0382590 | Msa1466350 | 0.815748 | 7.884850e-52 | -8.615850e-47 |
| Msa0387790 | Msa1466350 | 0.808690 | 2.735894e-50 | -8.615850e-47 |
| Msa0387970 | Msa1466350 | 0.823423 | 1.396671e-53 | -8.615850e-47 |
| Msa0392050 | Msa1466350 | 0.879285 | 1.411179e-69 | -8.615850e-47 |
| Msa0392540 | Msa1466350 | 0.816378 | 5.704350e-52 | -8.615850e-47 |
| Msa0393140 | Msa1466350 | 0.804116 | 2.520233e-49 | -8.615850e-47 |
| Msa0401340 | Msa1466350 | 0.855592 | 5.688108e-62 | -8.615850e-47 |
| Msa0404070 | Msa1466350 | 0.882656 | 8.678389e-71 | -8.615850e-47 |
| Msa0421720 | Msa1466350 | 0.801829 | 7.487464e-49 | -8.615850e-47 |
| Msa0430290 | Msa1466350 | 0.818639 | 1.765064e-52 | -8.615850e-47 |
| Msa0432720 | Msa1466350 | 0.833173 | 6.208069e-56 | -8.615850e-47 |
| Msa0437550 | Msa1466350 | 0.825958 | 3.529032e-54 | -8.615850e-47 |
| Msa0440310 | Msa1466350 | 0.810261 | 1.258816e-50 | -8.615850e-47 |
| Msa0445360 | Msa1466350 | 0.821868 | 3.210946e-53 | -8.615850e-47 |
| Msa0448120 | Msa1466350 | 0.865325 | 6.407084e-65 | -8.615850e-47 |
| Msa0463150 | Msa1466350 | 0.843061 | 1.765813e-58 | -8.615850e-47 |
| Msa0464510 | Msa1466350 | -0.825945 | 3.553850e-54 | -8.615850e-47 |
| Msa0465800 | Msa1466350 | 0.811520 | 6.718878e-51 | -8.615850e-47 |
| Msa0468020 | Msa1466350 | 0.832467 | 9.300059e-56 | -8.615850e-47 |
| Msa0469950 | Msa1466350 | 0.876890 | 9.741470e-69 | -8.615850e-47 |
| Msa0472740 | Msa1466350 | 0.813462 | 2.528255e-51 | -8.615850e-47 |
| Msa0481490 | Msa1466350 | 0.842116 | 3.146686e-58 | -8.615850e-47 |
| Msa0984000 | Msa1466350 | 0.865726 | 4.791765e-65 | -8.615850e-47 |
| Msa1030870 | Msa1466350 | 0.804052 | 2.599887e-49 | -8.615850e-47 |
| Msa1036020 | Msa1466350 | -0.807244 | 5.555916e-50 | -8.615850e-47 |
| Msa1036250 | Msa1466350 | 0.817456 | 3.266940e-52 | -8.615850e-47 |
| Msa1055360 | Msa1466350 | 0.806285 | 8.860707e-50 | -8.615850e-47 |
| Msa1069960 | Msa1466350 | 0.800947 | 1.134901e-48 | -8.615850e-47 |
| Msa1076520 | Msa1466350 | 0.831104 | 2.016921e-55 | -8.615850e-47 |
| Msa1082150 | Msa1466350 | 0.839828 | 1.254312e-57 | -8.615850e-47 |
| Msa1083140 | Msa1466350 | 0.807861 | 4.109258e-50 | -8.615850e-47 |
| Msa0238860 | Msa1466350 | 0.826070 | 3.319600e-54 | -8.615850e-47 |
| Msa0240450 | Msa1466350 | -0.816624 | 5.025189e-52 | -8.615850e-47 |
| Msa0253160 | Msa1466350 | 0.834542 | 2.821895e-56 | -8.615850e-47 |
| Msa0260190 | Msa1466350 | 0.852770 | 3.711716e-61 | -8.615850e-47 |
| Msa0265580 | Msa1466350 | 0.823411 | 1.405415e-53 | -8.615850e-47 |
| Msa0276590 | Msa1466350 | 0.803909 | 2.783015e-49 | -8.615850e-47 |
| Msa0291940 | Msa1466350 | 0.834028 | 3.796947e-56 | -8.615850e-47 |
| Msa0295570 | Msa1466350 | 0.818173 | 2.250268e-52 | -8.615850e-47 |
| Msa0303440 | Msa1466350 | 0.834124 | 3.593010e-56 | -8.615850e-47 |
| Msa0303500 | Msa1466350 | 0.840057 | 1.093107e-57 | -8.615850e-47 |
| Msa0316610 | Msa1466350 | 0.801876 | 7.321373e-49 | -8.615850e-47 |
| Msa0341190 | Msa1466350 | 0.801059 | 1.076473e-48 | -8.615850e-47 |
| Msa0344680 | Msa1466350 | 0.882995 | 6.521117e-71 | -8.615850e-47 |
| Msa0354390 | Msa1466350 | 0.835492 | 1.625673e-56 | -8.615850e-47 |
| Msa0358290 | Msa1466350 | 0.841675 | 4.115405e-58 | -8.615850e-47 |
| Msa1119860 | Msa1466350 | 0.807537 | 4.814997e-50 | -8.615850e-47 |
| Msa1127900 | Msa1466350 | 0.841888 | 3.616572e-58 | -8.615850e-47 |
| Msa1130660 | Msa1466350 | 0.806491 | 8.016407e-50 | -8.615850e-47 |
| Msa1134560 | Msa1466350 | 0.806721 | 7.170357e-50 | -8.615850e-47 |
| Msa1144730 | Msa1466350 | 0.880030 | 7.673534e-70 | -8.615850e-47 |
| Msa1144950 | Msa1466350 | 0.805893 | 1.071074e-49 | -8.615850e-47 |
| Msa1157730 | Msa1466350 | 0.823204 | 1.570484e-53 | -8.615850e-47 |
| Msa1158090 | Msa1466350 | 0.800393 | 1.471712e-48 | -8.615850e-47 |
| Msa1165810 | Msa1466350 | 0.836644 | 8.291476e-57 | -8.615850e-47 |
| Msa1166960 | Msa1466350 | 0.801015 | 1.099041e-48 | -8.615850e-47 |
| Msa1173380 | Msa1466350 | 0.840833 | 6.852457e-58 | -8.615850e-47 |
| Msa1177240 | Msa1466350 | 0.828837 | 7.200815e-55 | -8.615850e-47 |
| Msa1180050 | Msa1466350 | 0.803160 | 3.980012e-49 | -8.615850e-47 |
| Msa1182800 | Msa1466350 | 0.813545 | 2.425195e-51 | -8.615850e-47 |
| Msa1184010 | Msa1466350 | 0.852888 | 3.435431e-61 | -8.615850e-47 |
| Msa1187810 | Msa1466350 | 0.824230 | 9.035443e-54 | -8.615850e-47 |
| Msa1211300 | Msa1466350 | 0.806887 | 6.611428e-50 | -8.615850e-47 |
| Msa1211390 | Msa1466350 | 0.801389 | 9.215220e-49 | -8.615850e-47 |
| Msa1222030 | Msa1466350 | -0.807213 | 5.641911e-50 | -8.615850e-47 |
| Msa0487490 | Msa1466350 | 0.814238 | 1.706008e-51 | -8.615850e-47 |
| Msa0512310 | Msa1466350 | 0.808149 | 3.568703e-50 | -8.615850e-47 |
| Msa0525270 | Msa1466350 | 0.856889 | 2.369886e-62 | -8.615850e-47 |
| Msa0525280 | Msa1466350 | 0.847054 | 1.474095e-59 | -8.615850e-47 |
| Msa0530340 | Msa1466350 | 0.836328 | 9.982158e-57 | -8.615850e-47 |
| Msa0530950 | Msa1466350 | 0.802375 | 5.778924e-49 | -8.615850e-47 |
| Msa0545230 | Msa1466350 | 0.848285 | 6.757591e-60 | -8.615850e-47 |
| Msa0548210 | Msa1466350 | 0.835565 | 1.558220e-56 | -8.615850e-47 |
| Msa0549540 | Msa1466350 | 0.873905 | 1.023418e-67 | -8.615850e-47 |
| Msa0549760 | Msa1466350 | 0.894654 | 2.012893e-75 | -8.615850e-47 |
| Msa0556070 | Msa1466350 | 0.818359 | 2.042660e-52 | -8.615850e-47 |
| Msa0574240 | Msa1466350 | 0.802814 | 4.691553e-49 | -8.615850e-47 |
| Msa0577230 | Msa1466350 | 0.821959 | 3.059811e-53 | -8.615850e-47 |
| Msa0583740 | Msa1466350 | 0.827518 | 1.497035e-54 | -8.615850e-47 |
| Msa0587900 | Msa1466350 | 0.812872 | 3.407796e-51 | -8.615850e-47 |
| Msa0600820 | Msa1466350 | 0.821320 | 4.297801e-53 | -8.615850e-47 |
| Msa0848380 | Msa1466350 | 0.803765 | 2.982208e-49 | -8.615850e-47 |
| Msa0848760 | Msa1466350 | 0.800254 | 1.571090e-48 | -8.615850e-47 |
| Msa0853480 | Msa1466350 | 0.812520 | 4.067856e-51 | -8.615850e-47 |
| Msa0860920 | Msa1466350 | 0.805900 | 1.067594e-49 | -8.615850e-47 |
| Msa0863250 | Msa1466350 | 0.803838 | 2.879245e-49 | -8.615850e-47 |
| Msa0864730 | Msa1466350 | 0.805664 | 1.197039e-49 | -8.615850e-47 |
| Msa0864750 | Msa1466350 | 0.807958 | 3.918644e-50 | -8.615850e-47 |
| Msa0882700 | Msa1466350 | 0.812435 | 4.246800e-51 | -8.615850e-47 |
| Msa0904630 | Msa1466350 | 0.804431 | 2.167140e-49 | -8.615850e-47 |
| Msa0944690 | Msa1466350 | 0.834211 | 3.418053e-56 | -8.615850e-47 |
| Msa0945960 | Msa1466350 | 0.802156 | 6.412311e-49 | -8.615850e-47 |
| Msa0964650 | Msa1466350 | 0.815410 | 9.380149e-52 | -8.615850e-47 |
| Msa0968780 | Msa1466350 | 0.841020 | 6.121257e-58 | -8.615850e-47 |
| Msa0973890 | Msa1466350 | 0.800048 | 1.730386e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGGAACACATTCAATTT+TGG | 0.182549 | tig0046659:+377 | Msa1466350:CDS |
| CTAAGAGAAGTACCGTTAAT+TGG | 0.227037 | tig0046659:-356 | None:intergenic |
| CTTTGATGTGTAGTTCTTTC+GGG | 0.236568 | tig0046659:-470 | None:intergenic |
| CTTCGTCGTCATCAGGTTCT+AGG | 0.291225 | tig0046659:+66 | Msa1466350:CDS |
| GAACTCTAAATTGTGACTTT+TGG | 0.313236 | tig0046659:+800 | Msa1466350:three_prime_UTR |
| CTCTATGGAGATTACTAAAT+AGG | 0.315945 | tig0046659:-511 | None:intergenic |
| GCTTTGATGTGTAGTTCTTT+CGG | 0.334131 | tig0046659:-471 | None:intergenic |
| ATCAAATGCGGGAACCTCTA+TGG | 0.338170 | tig0046659:-526 | None:intergenic |
| AGTGGTGATGACTGGTTAAT+TGG | 0.352807 | tig0046659:+107 | Msa1466350:CDS |
| TTAACGGTACTTCTCTTAGT+TGG | 0.363400 | tig0046659:+360 | Msa1466350:CDS |
| GTTCATTGCAGAGGTAGTTA+TGG | 0.424073 | tig0046659:+283 | Msa1466350:intron |
| AAATTGATTTAGTGTTTGTT+GGG | 0.430422 | tig0046659:+584 | Msa1466350:three_prime_UTR |
| TGGTTGTCCACAACTAAAAC+AGG | 0.430808 | tig0046659:-311 | None:intergenic |
| TAAGAGAAGTACCGTTAATT+GGG | 0.442189 | tig0046659:-355 | None:intergenic |
| AAAATTGATTTAGTGTTTGT+TGG | 0.443100 | tig0046659:+583 | Msa1466350:three_prime_UTR |
| TTTCTGAAAGACAGCTGAGC+AGG | 0.451510 | tig0046659:-653 | None:intergenic |
| AACAGATCTTCGTCGTCATC+AGG | 0.453544 | tig0046659:+59 | Msa1466350:CDS |
| TGTTTGAAAGAAAATTATAC+AGG | 0.453994 | tig0046659:-755 | None:intergenic |
| CAATCTGACGCCCGATGCCC+TGG | 0.458234 | tig0046659:-331 | None:intergenic |
| TTGTGGACAACCAGGGCATC+GGG | 0.462191 | tig0046659:+321 | Msa1466350:CDS |
| TGAACCACTTAGGCCATCAC+TGG | 0.484550 | tig0046659:-429 | None:intergenic |
| CGTCAGATTGTCCCAATTAA+CGG | 0.488304 | tig0046659:+344 | Msa1466350:CDS |
| TAATATTTCTGTGGAGTGAA+TGG | 0.497580 | tig0046659:-711 | None:intergenic |
| GTTGTGGACAACCAGGGCAT+CGG | 0.502872 | tig0046659:+320 | Msa1466350:CDS |
| TTAAAACCAGTGGTGATGAC+TGG | 0.517463 | tig0046659:+99 | Msa1466350:CDS |
| CTATTTAGTAATCTCCATAG+AGG | 0.522599 | tig0046659:+512 | Msa1466350:three_prime_UTR |
| TTTGTTGGGGCAATGTTACT+CGG | 0.528217 | tig0046659:+598 | Msa1466350:three_prime_UTR |
| TTCAATTTCTTGAACCACTT+AGG | 0.535382 | tig0046659:-439 | None:intergenic |
| TTCGTCGTCATCAGGTTCTA+GGG | 0.548645 | tig0046659:+67 | Msa1466350:CDS |
| CATTGCAGAGGTAGTTATGG+AGG | 0.556291 | tig0046659:+286 | Msa1466350:intron |
| TACAAAAGCTAATATTTCTG+TGG | 0.563248 | tig0046659:-720 | None:intergenic |
| AATTGATTTAGTGTTTGTTG+GGG | 0.565006 | tig0046659:+585 | Msa1466350:three_prime_UTR |
| GGTCCATGTGCATAGTGAGC+AGG | 0.569388 | tig0046659:-831 | None:intergenic |
| AATTAACCAGTCATCACCAC+TGG | 0.576337 | tig0046659:-105 | None:intergenic |
| AAAAGTCTGATATCAAATGC+GGG | 0.579088 | tig0046659:-537 | None:intergenic |
| AATTCAGCTGCATCCAGTGA+TGG | 0.579381 | tig0046659:+416 | Msa1466350:CDS |
| GCATCCAGTGATGGCCTAAG+TGG | 0.582998 | tig0046659:+425 | Msa1466350:CDS |
| ACTGGAGGTGGACGATCAAG+TGG | 0.584590 | tig0046659:+23 | None:intergenic |
| ATTGCAGAGGTAGTTATGGA+GGG | 0.595367 | tig0046659:+287 | Msa1466350:intron |
| ATACCTGCTCACTATGCACA+TGG | 0.601321 | tig0046659:+828 | Msa1466350:three_prime_UTR |
| AAGTGGTTCAAGAAATTGAA+AGG | 0.601500 | tig0046659:+442 | Msa1466350:exon |
| TCATCAGGTTCTAGGGAGAG+AGG | 0.616285 | tig0046659:+74 | Msa1466350:CDS |
| CATACTTTGAAACAAACACA+TGG | 0.626477 | tig0046659:-852 | None:intergenic |
| GGTGATGACTGGTTAATTGG+AGG | 0.643911 | tig0046659:+110 | Msa1466350:CDS |
| TTGCAGAGGTAGTTATGGAG+GGG | 0.644021 | tig0046659:+288 | Msa1466350:intron |
| CTTTCAAACAAGCTTTCCCG+TGG | 0.646855 | tig0046659:+768 | Msa1466350:three_prime_UTR |
| TGCAGCTGAATTCTTGAACA+AGG | 0.665556 | tig0046659:-405 | None:intergenic |
| CTGGAGGTGGACGATCAAGT+GGG | 0.691338 | tig0046659:+24 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATGCAAATATATTTATT+CGG | + | tig0046659:869-888 | Msa1466350:three_prime_UTR | 15.0% |
| !!! | ACTAAATCAATTTTACATCA+CGG | - | tig0046659:577-596 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTAGTGTTTGT+TGG | + | tig0046659:583-602 | Msa1466350:three_prime_UTR | 20.0% |
| !!! | AAATTGATTTAGTGTTTGTT+GGG | + | tig0046659:584-603 | Msa1466350:three_prime_UTR | 20.0% |
| !! | TGTTTGAAAGAAAATTATAC+AGG | - | tig0046659:758-777 | None:intergenic | 20.0% |
| !!! | ACTAAATCAATTTTACATCA+CGG | - | tig0046659:577-596 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTAGTGTTTGT+TGG | + | tig0046659:583-602 | Msa1466350:three_prime_UTR | 20.0% |
| !!! | AAATTGATTTAGTGTTTGTT+GGG | + | tig0046659:584-603 | Msa1466350:three_prime_UTR | 20.0% |
| !! | TGTTTGAAAGAAAATTATAC+AGG | - | tig0046659:758-777 | None:intergenic | 20.0% |
| ! | AGATTCGTTTGCTTTATATT+TGG | + | tig0046659:232-251 | Msa1466350:intron | 25.0% |
| ! | GATTCGTTTGCTTTATATTT+GGG | + | tig0046659:233-252 | Msa1466350:intron | 25.0% |
| ! | AAAAAGTCTGATATCAAATG+CGG | - | tig0046659:541-560 | None:intergenic | 25.0% |
| !! | AATTGATTTAGTGTTTGTTG+GGG | + | tig0046659:585-604 | Msa1466350:three_prime_UTR | 25.0% |
| !! | TACAAAAGCTAATATTTCTG+TGG | - | tig0046659:723-742 | None:intergenic | 25.0% |
| !!! | ACAGAAATATTAGCTTTTGT+AGG | + | tig0046659:722-741 | Msa1466350:three_prime_UTR | 25.0% |
| ! | AGATTCGTTTGCTTTATATT+TGG | + | tig0046659:232-251 | Msa1466350:intron | 25.0% |
| ! | GATTCGTTTGCTTTATATTT+GGG | + | tig0046659:233-252 | Msa1466350:intron | 25.0% |
| ! | AAAAAGTCTGATATCAAATG+CGG | - | tig0046659:541-560 | None:intergenic | 25.0% |
| !! | AATTGATTTAGTGTTTGTTG+GGG | + | tig0046659:585-604 | Msa1466350:three_prime_UTR | 25.0% |
| !! | TACAAAAGCTAATATTTCTG+TGG | - | tig0046659:723-742 | None:intergenic | 25.0% |
| !!! | ACAGAAATATTAGCTTTTGT+AGG | + | tig0046659:722-741 | Msa1466350:three_prime_UTR | 25.0% |
| !! | TAAGAGAAGTACCGTTAATT+GGG | - | tig0046659:358-377 | None:intergenic | 30.0% |
| ! | AGTTGGAACACATTCAATTT+TGG | + | tig0046659:377-396 | Msa1466350:CDS | 30.0% |
| TTCAATTTCTTGAACCACTT+AGG | - | tig0046659:442-461 | None:intergenic | 30.0% | |
| AAGTGGTTCAAGAAATTGAA+AGG | + | tig0046659:442-461 | Msa1466350:exon | 30.0% | |
| CTCTATGGAGATTACTAAAT+AGG | - | tig0046659:514-533 | None:intergenic | 30.0% | |
| CTATTTAGTAATCTCCATAG+AGG | + | tig0046659:512-531 | Msa1466350:three_prime_UTR | 30.0% | |
| AAAAGTCTGATATCAAATGC+GGG | - | tig0046659:540-559 | None:intergenic | 30.0% | |
| ! | TAATATTTCTGTGGAGTGAA+TGG | - | tig0046659:714-733 | None:intergenic | 30.0% |
| ! | GAACTCTAAATTGTGACTTT+TGG | + | tig0046659:800-819 | Msa1466350:three_prime_UTR | 30.0% |
| !! | CATACTTTGAAACAAACACA+TGG | - | tig0046659:855-874 | None:intergenic | 30.0% |
| !! | TAAGAGAAGTACCGTTAATT+GGG | - | tig0046659:358-377 | None:intergenic | 30.0% |
| ! | AGTTGGAACACATTCAATTT+TGG | + | tig0046659:377-396 | Msa1466350:CDS | 30.0% |
| TTCAATTTCTTGAACCACTT+AGG | - | tig0046659:442-461 | None:intergenic | 30.0% | |
| AAGTGGTTCAAGAAATTGAA+AGG | + | tig0046659:442-461 | Msa1466350:exon | 30.0% | |
| CTCTATGGAGATTACTAAAT+AGG | - | tig0046659:514-533 | None:intergenic | 30.0% | |
| CTATTTAGTAATCTCCATAG+AGG | + | tig0046659:512-531 | Msa1466350:three_prime_UTR | 30.0% | |
| AAAAGTCTGATATCAAATGC+GGG | - | tig0046659:540-559 | None:intergenic | 30.0% | |
| ! | TAATATTTCTGTGGAGTGAA+TGG | - | tig0046659:714-733 | None:intergenic | 30.0% |
| ! | GAACTCTAAATTGTGACTTT+TGG | + | tig0046659:800-819 | Msa1466350:three_prime_UTR | 30.0% |
| !! | CATACTTTGAAACAAACACA+TGG | - | tig0046659:855-874 | None:intergenic | 30.0% |
| ATTTCTTGTTACCTCCTGTT+TGG | - | tig0046659:179-198 | None:intergenic | 35.0% | |
| !! | CTAAGAGAAGTACCGTTAAT+TGG | - | tig0046659:359-378 | None:intergenic | 35.0% |
| TTAACGGTACTTCTCTTAGT+TGG | + | tig0046659:360-379 | Msa1466350:CDS | 35.0% | |
| CTTTGATGTGTAGTTCTTTC+GGG | - | tig0046659:473-492 | None:intergenic | 35.0% | |
| GCTTTGATGTGTAGTTCTTT+CGG | - | tig0046659:474-493 | None:intergenic | 35.0% | |
| ! | TAGAGTTCATTTTCGTACCA+CGG | - | tig0046659:788-807 | None:intergenic | 35.0% |
| ATTTCTTGTTACCTCCTGTT+TGG | - | tig0046659:179-198 | None:intergenic | 35.0% | |
| !! | CTAAGAGAAGTACCGTTAAT+TGG | - | tig0046659:359-378 | None:intergenic | 35.0% |
| TTAACGGTACTTCTCTTAGT+TGG | + | tig0046659:360-379 | Msa1466350:CDS | 35.0% | |
| CTTTGATGTGTAGTTCTTTC+GGG | - | tig0046659:473-492 | None:intergenic | 35.0% | |
| GCTTTGATGTGTAGTTCTTT+CGG | - | tig0046659:474-493 | None:intergenic | 35.0% | |
| ! | TAGAGTTCATTTTCGTACCA+CGG | - | tig0046659:788-807 | None:intergenic | 35.0% |
| !!! | GAGAGAGGTTTTAAAACCAG+TGG | + | tig0046659:89-108 | Msa1466350:CDS | 40.0% |
| ! | TTAAAACCAGTGGTGATGAC+TGG | + | tig0046659:99-118 | Msa1466350:CDS | 40.0% |
| AATTAACCAGTCATCACCAC+TGG | - | tig0046659:108-127 | None:intergenic | 40.0% | |
| ! | AGTGGTGATGACTGGTTAAT+TGG | + | tig0046659:107-126 | Msa1466350:CDS | 40.0% |
| ACAGATCTTCATCACCAAAC+AGG | + | tig0046659:162-181 | Msa1466350:intron | 40.0% | |
| CATCTGAATGTTCATTGCAG+AGG | + | tig0046659:274-293 | Msa1466350:intron | 40.0% | |
| GTTCATTGCAGAGGTAGTTA+TGG | + | tig0046659:283-302 | Msa1466350:intron | 40.0% | |
| ATTGCAGAGGTAGTTATGGA+GGG | + | tig0046659:287-306 | Msa1466350:intron | 40.0% | |
| TGGTTGTCCACAACTAAAAC+AGG | - | tig0046659:314-333 | None:intergenic | 40.0% | |
| !!! | TGTTTTAGTTGTGGACAACC+AGG | + | tig0046659:313-332 | Msa1466350:CDS | 40.0% |
| !!! | GTTTTAGTTGTGGACAACCA+GGG | + | tig0046659:314-333 | Msa1466350:CDS | 40.0% |
| CGTCAGATTGTCCCAATTAA+CGG | + | tig0046659:344-363 | Msa1466350:CDS | 40.0% | |
| TGCAGCTGAATTCTTGAACA+AGG | - | tig0046659:408-427 | None:intergenic | 40.0% | |
| TTTGTTGGGGCAATGTTACT+CGG | + | tig0046659:598-617 | Msa1466350:three_prime_UTR | 40.0% | |
| GCTGTCTTTCAGAAAAAGAC+AGG | + | tig0046659:661-680 | Msa1466350:three_prime_UTR | 40.0% | |
| ! | AGAGTTCATTTTCGTACCAC+GGG | - | tig0046659:787-806 | None:intergenic | 40.0% |
| !!! | GAGAGAGGTTTTAAAACCAG+TGG | + | tig0046659:89-108 | Msa1466350:CDS | 40.0% |
| ! | TTAAAACCAGTGGTGATGAC+TGG | + | tig0046659:99-118 | Msa1466350:CDS | 40.0% |
| AATTAACCAGTCATCACCAC+TGG | - | tig0046659:108-127 | None:intergenic | 40.0% | |
| ! | AGTGGTGATGACTGGTTAAT+TGG | + | tig0046659:107-126 | Msa1466350:CDS | 40.0% |
| ACAGATCTTCATCACCAAAC+AGG | + | tig0046659:162-181 | Msa1466350:intron | 40.0% | |
| CATCTGAATGTTCATTGCAG+AGG | + | tig0046659:274-293 | Msa1466350:intron | 40.0% | |
| GTTCATTGCAGAGGTAGTTA+TGG | + | tig0046659:283-302 | Msa1466350:intron | 40.0% | |
| ATTGCAGAGGTAGTTATGGA+GGG | + | tig0046659:287-306 | Msa1466350:intron | 40.0% | |
| TGGTTGTCCACAACTAAAAC+AGG | - | tig0046659:314-333 | None:intergenic | 40.0% | |
| !!! | TGTTTTAGTTGTGGACAACC+AGG | + | tig0046659:313-332 | Msa1466350:CDS | 40.0% |
| !!! | GTTTTAGTTGTGGACAACCA+GGG | + | tig0046659:314-333 | Msa1466350:CDS | 40.0% |
| CGTCAGATTGTCCCAATTAA+CGG | + | tig0046659:344-363 | Msa1466350:CDS | 40.0% | |
| TGCAGCTGAATTCTTGAACA+AGG | - | tig0046659:408-427 | None:intergenic | 40.0% | |
| TTTGTTGGGGCAATGTTACT+CGG | + | tig0046659:598-617 | Msa1466350:three_prime_UTR | 40.0% | |
| GCTGTCTTTCAGAAAAAGAC+AGG | + | tig0046659:661-680 | Msa1466350:three_prime_UTR | 40.0% | |
| ! | AGAGTTCATTTTCGTACCAC+GGG | - | tig0046659:787-806 | None:intergenic | 40.0% |
| AACAGATCTTCGTCGTCATC+AGG | + | tig0046659:59-78 | Msa1466350:CDS | 45.0% | |
| TTCGTCGTCATCAGGTTCTA+GGG | + | tig0046659:67-86 | Msa1466350:CDS | 45.0% | |
| ! | GGTGATGACTGGTTAATTGG+AGG | + | tig0046659:110-129 | Msa1466350:CDS | 45.0% |
| ATTGGAGGTAGACGATCAAG+CGG | + | tig0046659:125-144 | Msa1466350:intron | 45.0% | |
| GATCTTCATCACCAAACAGG+AGG | + | tig0046659:165-184 | Msa1466350:intron | 45.0% | |
| TTGGGTGTGCGTATAACTCA+TGG | + | tig0046659:251-270 | Msa1466350:intron | 45.0% | |
| CATTGCAGAGGTAGTTATGG+AGG | + | tig0046659:286-305 | Msa1466350:intron | 45.0% | |
| TTGCAGAGGTAGTTATGGAG+GGG | + | tig0046659:288-307 | Msa1466350:intron | 45.0% | |
| AATTCAGCTGCATCCAGTGA+TGG | + | tig0046659:416-435 | Msa1466350:CDS | 45.0% | |
| ATCAAATGCGGGAACCTCTA+TGG | - | tig0046659:529-548 | None:intergenic | 45.0% | |
| ! | TTTCTGAAAGACAGCTGAGC+AGG | - | tig0046659:656-675 | None:intergenic | 45.0% |
| CTTTCAAACAAGCTTTCCCG+TGG | + | tig0046659:768-787 | Msa1466350:three_prime_UTR | 45.0% | |
| ATACCTGCTCACTATGCACA+TGG | + | tig0046659:828-847 | Msa1466350:three_prime_UTR | 45.0% | |
| AACAGATCTTCGTCGTCATC+AGG | + | tig0046659:59-78 | Msa1466350:CDS | 45.0% | |
| TTCGTCGTCATCAGGTTCTA+GGG | + | tig0046659:67-86 | Msa1466350:CDS | 45.0% | |
| ! | GGTGATGACTGGTTAATTGG+AGG | + | tig0046659:110-129 | Msa1466350:CDS | 45.0% |
| ATTGGAGGTAGACGATCAAG+CGG | + | tig0046659:125-144 | Msa1466350:intron | 45.0% | |
| GATCTTCATCACCAAACAGG+AGG | + | tig0046659:165-184 | Msa1466350:intron | 45.0% | |
| TTGGGTGTGCGTATAACTCA+TGG | + | tig0046659:251-270 | Msa1466350:intron | 45.0% | |
| CATTGCAGAGGTAGTTATGG+AGG | + | tig0046659:286-305 | Msa1466350:intron | 45.0% | |
| TTGCAGAGGTAGTTATGGAG+GGG | + | tig0046659:288-307 | Msa1466350:intron | 45.0% | |
| AATTCAGCTGCATCCAGTGA+TGG | + | tig0046659:416-435 | Msa1466350:CDS | 45.0% | |
| ATCAAATGCGGGAACCTCTA+TGG | - | tig0046659:529-548 | None:intergenic | 45.0% | |
| ! | TTTCTGAAAGACAGCTGAGC+AGG | - | tig0046659:656-675 | None:intergenic | 45.0% |
| CTTTCAAACAAGCTTTCCCG+TGG | + | tig0046659:768-787 | Msa1466350:three_prime_UTR | 45.0% | |
| ATACCTGCTCACTATGCACA+TGG | + | tig0046659:828-847 | Msa1466350:three_prime_UTR | 45.0% | |
| CTTCGTCGTCATCAGGTTCT+AGG | + | tig0046659:66-85 | Msa1466350:CDS | 50.0% | |
| !! | TCATCAGGTTCTAGGGAGAG+AGG | + | tig0046659:74-93 | Msa1466350:CDS | 50.0% |
| TTGGAGGTAGACGATCAAGC+GGG | + | tig0046659:126-145 | Msa1466350:intron | 50.0% | |
| TGAACCACTTAGGCCATCAC+TGG | - | tig0046659:432-451 | None:intergenic | 50.0% | |
| CTTCGTCGTCATCAGGTTCT+AGG | + | tig0046659:66-85 | Msa1466350:CDS | 50.0% | |
| !! | TCATCAGGTTCTAGGGAGAG+AGG | + | tig0046659:74-93 | Msa1466350:CDS | 50.0% |
| TTGGAGGTAGACGATCAAGC+GGG | + | tig0046659:126-145 | Msa1466350:intron | 50.0% | |
| TGAACCACTTAGGCCATCAC+TGG | - | tig0046659:432-451 | None:intergenic | 50.0% | |
| !!! | GGAGGGGCCTGTTTTAGTTG+TGG | + | tig0046659:304-323 | Msa1466350:CDS | 55.0% |
| GTTGTGGACAACCAGGGCAT+CGG | + | tig0046659:320-339 | Msa1466350:CDS | 55.0% | |
| ! | TTGTGGACAACCAGGGCATC+GGG | + | tig0046659:321-340 | Msa1466350:CDS | 55.0% |
| GCATCCAGTGATGGCCTAAG+TGG | + | tig0046659:425-444 | Msa1466350:CDS | 55.0% | |
| GGTCCATGTGCATAGTGAGC+AGG | - | tig0046659:834-853 | None:intergenic | 55.0% | |
| !!! | GGAGGGGCCTGTTTTAGTTG+TGG | + | tig0046659:304-323 | Msa1466350:CDS | 55.0% |
| GTTGTGGACAACCAGGGCAT+CGG | + | tig0046659:320-339 | Msa1466350:CDS | 55.0% | |
| ! | TTGTGGACAACCAGGGCATC+GGG | + | tig0046659:321-340 | Msa1466350:CDS | 55.0% |
| GCATCCAGTGATGGCCTAAG+TGG | + | tig0046659:425-444 | Msa1466350:CDS | 55.0% | |
| GGTCCATGTGCATAGTGAGC+AGG | - | tig0046659:834-853 | None:intergenic | 55.0% | |
| CAATCTGACGCCCGATGCCC+TGG | - | tig0046659:334-353 | None:intergenic | 65.0% | |
| CAATCTGACGCCCGATGCCC+TGG | - | tig0046659:334-353 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0046659 | gene | 32 | 889 | 32 | ID=Msa1466350;Name=Msa1466350 |
| tig0046659 | mRNA | 32 | 889 | 32 | ID=Msa1466350-mRNA-1;Parent=Msa1466350;Name=Msa1466350-mRNA-1;_AED=0.05;_eAED=0.19;_QI=0|0|0.5|1|1|0.5|2|429|88 |
| tig0046659 | exon | 32 | 131 | 32 | ID=Msa1466350-mRNA-1:exon:25057;Parent=Msa1466350-mRNA-1 |
| tig0046659 | exon | 294 | 889 | 294 | ID=Msa1466350-mRNA-1:exon:25058;Parent=Msa1466350-mRNA-1 |
| tig0046659 | CDS | 32 | 131 | 32 | ID=Msa1466350-mRNA-1:cds;Parent=Msa1466350-mRNA-1 |
| tig0046659 | CDS | 294 | 460 | 294 | ID=Msa1466350-mRNA-1:cds;Parent=Msa1466350-mRNA-1 |
| tig0046659 | three_prime_UTR | 461 | 889 | 461 | ID=Msa1466350-mRNA-1:three_prime_utr;Parent=Msa1466350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
