Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781750 | XP_003616200.1 | 94.634 | 205 | 8 | 1 | 1 | 205 | 1 | 202 | 3.82e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781750 | G7KFX1 | 94.634 | 205 | 8 | 1 | 1 | 205 | 1 | 202 | 1.82e-132 | 379 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0753720 | Msa0781750 | 0.801857 | 7.386759e-49 | -8.615850e-47 |
| Msa0764130 | Msa0781750 | -0.804809 | 1.807160e-49 | -8.615850e-47 |
| Msa0781750 | Msa0843780 | -0.812314 | 4.511251e-51 | -8.615850e-47 |
| Msa0781750 | Msa0876190 | 0.804603 | 1.995632e-49 | -8.615850e-47 |
| Msa0781750 | Msa0879550 | -0.800678 | 1.287454e-48 | -8.615850e-47 |
| Msa0781750 | Msa0926890 | 0.800057 | 1.722601e-48 | -8.615850e-47 |
| Msa0781750 | Msa0927380 | 0.800548 | 1.368757e-48 | -8.615850e-47 |
| Msa0781750 | Msa0969520 | 0.812238 | 4.687139e-51 | -8.615850e-47 |
| Msa0781750 | Msa0993290 | 0.801536 | 8.596587e-49 | -8.615850e-47 |
| Msa0781750 | Msa0993600 | 0.801833 | 7.470355e-49 | -8.615850e-47 |
| Msa0781750 | Msa0997370 | 0.825904 | 3.635112e-54 | -8.615850e-47 |
| Msa0781750 | Msa1030970 | 0.802268 | 6.081274e-49 | -8.615850e-47 |
| Msa0781750 | Msa1043370 | 0.800175 | 1.630305e-48 | -8.615850e-47 |
| Msa0781750 | Msa1112690 | 0.830666 | 2.582780e-55 | -8.615850e-47 |
| Msa0781750 | Msa1121490 | 0.813748 | 2.187058e-51 | -8.615850e-47 |
| Msa0781750 | Msa1137570 | 0.800201 | 1.610895e-48 | -8.615850e-47 |
| Msa0781750 | Msa1148000 | 0.808829 | 2.554672e-50 | -8.615850e-47 |
| Msa0781750 | Msa1242670 | 0.825624 | 4.234078e-54 | -8.615850e-47 |
| Msa0781750 | Msa1276890 | 0.821376 | 4.172206e-53 | -8.615850e-47 |
| Msa0781750 | Msa1283840 | 0.804012 | 2.649153e-49 | -8.615850e-47 |
| Msa0781750 | Msa1284260 | 0.800841 | 1.192899e-48 | -8.615850e-47 |
| Msa0781750 | Msa1327050 | 0.818315 | 2.090175e-52 | -8.615850e-47 |
| Msa0781750 | Msa1346370 | 0.803781 | 2.959280e-49 | -8.615850e-47 |
| Msa0781750 | Msa1461300 | 0.809675 | 1.682581e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781750 | MtrunA17_Chr5g0434081 | 94.634 | 205 | 8 | 1 | 1 | 205 | 1 | 202 | 3.51e-136 | 379 |
| Msa0781750 | MtrunA17_Chr5g0443491 | 64.497 | 169 | 57 | 1 | 40 | 205 | 64 | 232 | 3.37e-69 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781750 | AT5G16550.1 | 51.176 | 170 | 74 | 2 | 39 | 205 | 77 | 240 | 3.74e-47 | 155 |
Find 63 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTGTGTTACACAATTA+AGG | 0.154601 | 5_2:-64336880 | Msa0781750:three_prime_UTR |
| TACCTTTATGCTTCTCCTTC+TGG | 0.191402 | 5_2:-64338519 | Msa0781750:CDS |
| GGCGGTAGCCGGAGGATTCT+TGG | 0.249151 | 5_2:-64338453 | Msa0781750:CDS |
| ACCAAACAGTGAGTGGGATT+TGG | 0.280277 | 5_2:+64336970 | None:intergenic |
| AACAGTCGAAATTACAAATA+TGG | 0.302623 | 5_2:+64338379 | None:intergenic |
| TTCAAATTATTCTGCTGCTT+GGG | 0.311168 | 5_2:-64337115 | Msa0781750:CDS |
| TCGACCTCTCCTTCTCATTT+CGG | 0.313356 | 5_2:-64339877 | Msa0781750:intron |
| CCAAACAGTGAGTGGGATTT+GGG | 0.313820 | 5_2:+64336971 | None:intergenic |
| CTAGAAGCTTCGGGAATATA+AGG | 0.325702 | 5_2:+64339948 | None:intergenic |
| TAATTTCGACTGTTGTGTTC+TGG | 0.343087 | 5_2:-64338370 | Msa0781750:CDS |
| CCCAAATCCCACTCACTGTT+TGG | 0.345488 | 5_2:-64336971 | Msa0781750:three_prime_UTR |
| TTAGTGACAGCAATATATAT+TGG | 0.354686 | 5_2:-64338416 | Msa0781750:CDS |
| TTCATTTCTTTGGCGGTAGC+CGG | 0.392141 | 5_2:-64338464 | Msa0781750:CDS |
| GTGTAGTTTCTAGAAGCTTC+GGG | 0.394632 | 5_2:+64339939 | None:intergenic |
| ATTGCTCTTGTTGCCTTGAC+AGG | 0.399432 | 5_2:-64338548 | Msa0781750:CDS |
| TACTACAGTTCCAATCTTGA+TGG | 0.404777 | 5_2:-64340183 | None:intergenic |
| AGTGTAGTTTCTAGAAGCTT+CGG | 0.407995 | 5_2:+64339938 | None:intergenic |
| GCCTGTGATCAGCTCCTAAT+CGG | 0.412103 | 5_2:+64337065 | None:intergenic |
| AATCGGAATGTTTGTGTGAA+TGG | 0.419383 | 5_2:+64337082 | None:intergenic |
| GTATTGTGTTACACAATTAA+GGG | 0.422615 | 5_2:-64336879 | Msa0781750:three_prime_UTR |
| TTTCAAATTATTCTGCTGCT+TGG | 0.425692 | 5_2:-64337116 | Msa0781750:CDS |
| CACTCACTGTTTGGTTTCGA+TGG | 0.430823 | 5_2:-64336962 | Msa0781750:three_prime_UTR |
| TTCACACAAACATTCCGATT+AGG | 0.462071 | 5_2:-64337079 | Msa0781750:exon |
| GTTATAATATGATCCTGCTC+TGG | 0.462470 | 5_2:+64336644 | None:intergenic |
| CAGAAACTTCTTCTGTTGAC+TGG | 0.466101 | 5_2:-64337000 | Msa0781750:three_prime_UTR |
| AACTGAAAAGATGGCAGAGA+AGG | 0.480760 | 5_2:-64340096 | Msa0781750:exon |
| AACCAGAAGGAGAAGCATAA+AGG | 0.481508 | 5_2:+64338517 | None:intergenic |
| ATAATACGAGCAGGATGGGT+TGG | 0.490556 | 5_2:-64337219 | Msa0781750:intron |
| AACCTTGTTATACTGCAAAT+CGG | 0.492270 | 5_2:-64339989 | Msa0781750:CDS |
| ACACTCGCCGTGTTCTTCGT+TGG | 0.496684 | 5_2:-64339920 | Msa0781750:CDS |
| TCCGATTAGGAGCTGATCAC+AGG | 0.508117 | 5_2:-64337066 | Msa0781750:exon |
| TTGATTGCTAGCAAGAGCCT+TGG | 0.508546 | 5_2:-64337177 | Msa0781750:CDS |
| GAAGGAGAAGCATAAAGGTA+AGG | 0.513668 | 5_2:+64338522 | None:intergenic |
| ATGGCTATTCTGATAACTGC+AGG | 0.535666 | 5_2:-64338341 | Msa0781750:intron |
| TTCGATCTGAACTGAAAAGA+TGG | 0.536345 | 5_2:-64340105 | Msa0781750:exon |
| AATGAAAAGAGAGACGATGA+TGG | 0.555975 | 5_2:+64338481 | None:intergenic |
| AAGATGGCAGAGAAGGAAAA+CGG | 0.561514 | 5_2:-64340089 | Msa0781750:CDS |
| TCAAATTATTCTGCTGCTTG+GGG | 0.566125 | 5_2:-64337114 | Msa0781750:CDS |
| TGTTAGCCTACGTAATTACC+TGG | 0.568456 | 5_2:-64336833 | Msa0781750:three_prime_UTR |
| GAAAAGAGCCAAGAATCCTC+CGG | 0.573357 | 5_2:+64338445 | None:intergenic |
| GTTCTTCGTTGGACTCGTCA+AGG | 0.574672 | 5_2:-64339909 | Msa0781750:CDS |
| CATCGAAACCAAACAGTGAG+TGG | 0.576080 | 5_2:+64336963 | None:intergenic |
| AGCTTAAGTTGTACAATACC+AGG | 0.580332 | 5_2:+64336815 | None:intergenic |
| ATTTCTTTGGCGGTAGCCGG+AGG | 0.583083 | 5_2:-64338461 | Msa0781750:CDS |
| AATGTTTGTGTGAATGGTTG+CGG | 0.584055 | 5_2:+64337088 | None:intergenic |
| CATTGATAGTTGCAACCAGA+AGG | 0.586472 | 5_2:+64338504 | None:intergenic |
| ATCCGATTTGCAGTATAACA+AGG | 0.587302 | 5_2:+64339987 | None:intergenic |
| TATTCAGTTGAAACCAGAGC+AGG | 0.596394 | 5_2:-64336657 | Msa0781750:three_prime_UTR |
| TGCAGTTATCAGAATAGCCA+TGG | 0.597543 | 5_2:+64338343 | None:intergenic |
| ATTAGGAGCTGATCACAGGC+AGG | 0.599270 | 5_2:-64337062 | Msa0781750:exon |
| GCAGTGTTGATAAGATATGC+TGG | 0.606844 | 5_2:-64336908 | Msa0781750:three_prime_UTR |
| AAAGGTAAGGAGTCCTGTCA+AGG | 0.607151 | 5_2:+64338535 | None:intergenic |
| ATCGAAACCAAACAGTGAGT+GGG | 0.619872 | 5_2:+64336964 | None:intergenic |
| GTAACCGAACCGAAATGAGA+AGG | 0.629050 | 5_2:+64339868 | None:intergenic |
| AAACACTCATTAAGCGTGAG+TGG | 0.633113 | 5_2:-64337147 | Msa0781750:CDS |
| CTTATGCATTGAGTTACATG+TGG | 0.636626 | 5_2:-64337037 | Msa0781750:three_prime_UTR |
| CGAACCGAAATGAGAAGGAG+AGG | 0.653048 | 5_2:+64339873 | None:intergenic |
| TGCATGAAACTGCATTTGTG+TGG | 0.662742 | 5_2:-64336792 | Msa0781750:three_prime_UTR |
| GGGAATATAAGGAGAGAGTG+AGG | 0.663880 | 5_2:+64339959 | None:intergenic |
| GACGAGTCCAACGAAGAACA+CGG | 0.673717 | 5_2:+64339913 | None:intergenic |
| TGTTGTGTTCTGGACAACCA+TGG | 0.680230 | 5_2:-64338360 | Msa0781750:CDS |
| ACAATACCAGGTAATTACGT+AGG | 0.690583 | 5_2:+64336827 | None:intergenic |
| TTGTGTACTTGTATGAACAA+AGG | 0.698711 | 5_2:-64336739 | Msa0781750:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATATTTATATTAACAA+TGG | - | chr5_2:64337133-64337152 | Msa0781750:CDS | 10.0% |
| !!! | ATTTTAATATGATTTTGTTT+TGG | + | chr5_2:64337233-64337252 | None:intergenic | 10.0% |
| !! | TAACTTTAAATTTATTAAAC+TGG | + | chr5_2:64339317-64339336 | None:intergenic | 10.0% |
| !!! | TAAATTAGTAATGTTTTTCA+GGG | - | chr5_2:64337256-64337275 | Msa0781750:intron | 15.0% |
| !! | CATTAAGAAAATTTAATCTA+TGG | + | chr5_2:64338593-64338612 | None:intergenic | 15.0% |
| !!! | CTAAATTAGTAATGTTTTTC+AGG | - | chr5_2:64337255-64337274 | Msa0781750:intron | 20.0% |
| !! | GCTTCTATATTTATTATATG+CGG | - | chr5_2:64337902-64337921 | Msa0781750:intron | 20.0% |
| !! | CTTCTATATTTATTATATGC+GGG | - | chr5_2:64337903-64337922 | Msa0781750:intron | 20.0% |
| !! | TGATGATTACACTAAAAATA+TGG | + | chr5_2:64338168-64338187 | None:intergenic | 20.0% |
| !! | CAATTAAAGAGAAAAGAAAA+AGG | + | chr5_2:64338521-64338540 | None:intergenic | 20.0% |
| !! | AATGACATGTAGATATAAAT+TGG | - | chr5_2:64338609-64338628 | Msa0781750:intron | 20.0% |
| !!! | TTTATTTTCTCCTTTTTTTC+TGG | - | chr5_2:64339547-64339566 | Msa0781750:intron | 20.0% |
| !!! | TCACATTTTTCTATTTATGA+TGG | + | chr5_2:64340131-64340150 | None:intergenic | 20.0% |
| !! | ATAGAAAAATGTGAAAACAT+CGG | - | chr5_2:64340137-64340156 | Msa0781750:five_prime_UTR | 20.0% |
| ! | TATTAACAATGGTTGTTCTA+AGG | - | chr5_2:64337144-64337163 | Msa0781750:CDS | 25.0% |
| !! | CACATCAGGATTTTAAATAA+AGG | + | chr5_2:64337709-64337728 | None:intergenic | 25.0% |
| ! | TGCAGTTAGTTAGTTATTTA+CGG | - | chr5_2:64337860-64337879 | Msa0781750:intron | 25.0% |
| ! | TAATCATCATGTCAAGAAAA+TGG | - | chr5_2:64338179-64338198 | Msa0781750:intron | 25.0% |
| ! | AATCATCATGTCAAGAAAAT+GGG | - | chr5_2:64338180-64338199 | Msa0781750:intron | 25.0% |
| !!! | TCCTTTTAGTTGAATGTTTA+TGG | - | chr5_2:64338216-64338235 | Msa0781750:intron | 25.0% |
| ! | ACCATAAACATTCAACTAAA+AGG | + | chr5_2:64338220-64338239 | None:intergenic | 25.0% |
| ! | TTAGTGACAGCAATATATAT+TGG | - | chr5_2:64338402-64338421 | Msa0781750:CDS | 25.0% |
| ! | AACAGTCGAAATTACAAATA+TGG | + | chr5_2:64338442-64338461 | None:intergenic | 25.0% |
| ! | TAAAGAGAAAAGAAAAAGGT+TGG | + | chr5_2:64338517-64338536 | None:intergenic | 25.0% |
| !! | TTTTTGCATGTAATTGTACA+TGG | - | chr5_2:64338866-64338885 | Msa0781750:intron | 25.0% |
| !! | TCATTTAATTTCCTAATGTG+CGG | + | chr5_2:64339091-64339110 | None:intergenic | 25.0% |
| !! | ATTTCAAACAGTCATGATTT+TGG | - | chr5_2:64339244-64339263 | Msa0781750:intron | 25.0% |
| !! | TTTCAAACAGTCATGATTTT+GGG | - | chr5_2:64339245-64339264 | Msa0781750:intron | 25.0% |
| ! | AATATGAAAATAATACGAGC+AGG | - | chr5_2:64339590-64339609 | Msa0781750:intron | 25.0% |
| ! | TGTATTGTGTTACACAATTA+AGG | - | chr5_2:64339938-64339957 | Msa0781750:CDS | 25.0% |
| ! | GTATTGTGTTACACAATTAA+GGG | - | chr5_2:64339939-64339958 | Msa0781750:CDS | 25.0% |
| ! | TAGAAAAATGTGAAAACATC+GGG | - | chr5_2:64340138-64340157 | Msa0781750:five_prime_UTR | 25.0% |
| !!! | CAACTGAATTTTGAGTTAGT+TGG | + | chr5_2:64336693-64336712 | None:intergenic | 30.0% |
| ! | AACCTTGTTATACTGCAAAT+CGG | - | chr5_2:64336829-64336848 | Msa0781750:three_prime_UTR | 30.0% |
| AAAATTTCACCCGAATAAGT+GGG | + | chr5_2:64337379-64337398 | None:intergenic | 30.0% | |
| CTACTTGACCAACAAAAAAA+GGG | - | chr5_2:64337409-64337428 | Msa0781750:intron | 30.0% | |
| TACTTGACCAACAAAAAAAG+GGG | - | chr5_2:64337410-64337429 | Msa0781750:intron | 30.0% | |
| ! | CAATTTTGCTTGTGATTAAC+CGG | - | chr5_2:64337465-64337484 | Msa0781750:intron | 30.0% |
| ! | AATTTTGCTTGTGATTAACC+GGG | - | chr5_2:64337466-64337485 | Msa0781750:intron | 30.0% |
| TTTGGAGGGAAAAAAAATAG+TGG | - | chr5_2:64337535-64337554 | Msa0781750:intron | 30.0% | |
| TGTGATCATTGATATTGTAC+AGG | - | chr5_2:64337588-64337607 | Msa0781750:intron | 30.0% | |
| TTATATCTCAGTCTAGATTG+TGG | - | chr5_2:64337671-64337690 | Msa0781750:intron | 30.0% | |
| AATTAGTCCTCGATGAATAT+TGG | - | chr5_2:64337759-64337778 | Msa0781750:intron | 30.0% | |
| TATTTATTATATGCGGGACT+TGG | - | chr5_2:64337909-64337928 | Msa0781750:intron | 30.0% | |
| ATTTATTATATGCGGGACTT+GGG | - | chr5_2:64337910-64337929 | Msa0781750:intron | 30.0% | |
| ATTAACAAAGAGCAACCAAA+TGG | + | chr5_2:64337989-64338008 | None:intergenic | 30.0% | |
| TTTGGTTGCTCTTTGTTAAT+CGG | - | chr5_2:64337989-64338008 | Msa0781750:intron | 30.0% | |
| TTCTTACACACAAATATTGC+AGG | + | chr5_2:64338059-64338078 | None:intergenic | 30.0% | |
| ! | CATTCTCAGTATTGAAATCA+TGG | - | chr5_2:64338083-64338102 | Msa0781750:intron | 30.0% |
| TTTACCATGTTCTCTTGAAT+TGG | + | chr5_2:64338120-64338139 | None:intergenic | 30.0% | |
| ATCATCATGTCAAGAAAATG+GGG | - | chr5_2:64338181-64338200 | Msa0781750:intron | 30.0% | |
| !!! | TGCTTCTTTTTTATGAAGAC+TGG | - | chr5_2:64338670-64338689 | Msa0781750:intron | 30.0% |
| ! | ATTATTTCAGATCGTCGATT+GGG | - | chr5_2:64338694-64338713 | Msa0781750:intron | 30.0% |
| TTCAAGCATCTTTCTATACA+GGG | + | chr5_2:64338736-64338755 | None:intergenic | 30.0% | |
| ATTCAAGCATCTTTCTATAC+AGG | + | chr5_2:64338737-64338756 | None:intergenic | 30.0% | |
| TTCTATACATACACACACTT+CGG | + | chr5_2:64338764-64338783 | None:intergenic | 30.0% | |
| !! | AAATAGGTTGATATTGACCT+CGG | - | chr5_2:64339052-64339071 | Msa0781750:intron | 30.0% |
| AATATTCCATCAGGTAATTC+TGG | + | chr5_2:64339172-64339191 | None:intergenic | 30.0% | |
| GAAAGAAAGAATATTCCATC+AGG | + | chr5_2:64339181-64339200 | None:intergenic | 30.0% | |
| TCAATCTCAACTCAACAAAT+TGG | - | chr5_2:64339199-64339218 | Msa0781750:intron | 30.0% | |
| TCAACTCAACAAATTGGAAA+TGG | - | chr5_2:64339205-64339224 | Msa0781750:intron | 30.0% | |
| !!! | AAGTTTTTAGCTTTCTGAGA+TGG | - | chr5_2:64339504-64339523 | Msa0781750:intron | 30.0% |
| TAGTGTTAGACCAGAAAAAA+AGG | + | chr5_2:64339560-64339579 | None:intergenic | 30.0% | |
| TTTCAAATTATTCTGCTGCT+TGG | - | chr5_2:64339702-64339721 | Msa0781750:intron | 30.0% | |
| ! | TTCAAATTATTCTGCTGCTT+GGG | - | chr5_2:64339703-64339722 | Msa0781750:intron | 30.0% |
| ! | ATTAAGGGTTGAAAAAGCAT+TGG | - | chr5_2:64339954-64339973 | Msa0781750:CDS | 30.0% |
| TTGTGTACTTGTATGAACAA+AGG | - | chr5_2:64340079-64340098 | Msa0781750:CDS | 30.0% | |
| !!! | CTGAATTTTGAGTTAGTTGG+AGG | + | chr5_2:64336690-64336709 | None:intergenic | 35.0% |
| TTCGATCTGAACTGAAAAGA+TGG | - | chr5_2:64336713-64336732 | Msa0781750:three_prime_UTR | 35.0% | |
| ! | ATCCGATTTGCAGTATAACA+AGG | + | chr5_2:64336834-64336853 | None:intergenic | 35.0% |
| ! | AGTGTAGTTTCTAGAAGCTT+CGG | + | chr5_2:64336883-64336902 | None:intergenic | 35.0% |
| TCTCATTAACTTAGCTTAGC+TGG | - | chr5_2:64337299-64337318 | Msa0781750:intron | 35.0% | |
| CTCATTAACTTAGCTTAGCT+GGG | - | chr5_2:64337300-64337319 | Msa0781750:intron | 35.0% | |
| AATTTGCAACATGCAAGAGT+CGG | - | chr5_2:64337335-64337354 | Msa0781750:intron | 35.0% | |
| CAAAATTTCACCCGAATAAG+TGG | + | chr5_2:64337380-64337399 | None:intergenic | 35.0% | |
| ! | CACTTATTCGGGTGAAATTT+TGG | - | chr5_2:64337378-64337397 | Msa0781750:intron | 35.0% |
| !!! | CCTTTTTTTGTTGGTCAAGT+AGG | + | chr5_2:64337411-64337430 | None:intergenic | 35.0% |
| CCTACTTGACCAACAAAAAA+AGG | - | chr5_2:64337408-64337427 | Msa0781750:intron | 35.0% | |
| !!! | AATTGCACCCCTTTTTTTGT+TGG | + | chr5_2:64337420-64337439 | None:intergenic | 35.0% |
| ! | TGGTTGTCCATGAAACATTT+TGG | - | chr5_2:64337517-64337536 | Msa0781750:intron | 35.0% |
| ! | TTGTCCATGAAACATTTTGG+AGG | - | chr5_2:64337520-64337539 | Msa0781750:intron | 35.0% |
| ! | TGTCCATGAAACATTTTGGA+GGG | - | chr5_2:64337521-64337540 | Msa0781750:intron | 35.0% |
| TTTCCCTCCAAAATGTTTCA+TGG | + | chr5_2:64337527-64337546 | None:intergenic | 35.0% | |
| ATAGTGGTTGCATTAACGAT+TGG | - | chr5_2:64337551-64337570 | Msa0781750:intron | 35.0% | |
| TGATAGTCCAATATTCATCG+AGG | + | chr5_2:64337769-64337788 | None:intergenic | 35.0% | |
| TCTGGTGTTTATAAGCCATT+TGG | - | chr5_2:64337971-64337990 | Msa0781750:intron | 35.0% | |
| TCATTTCAGTTTCATCCTTC+TGG | - | chr5_2:64338025-64338044 | Msa0781750:intron | 35.0% | |
| TACACCAATTCAAGAGAACA+TGG | - | chr5_2:64338113-64338132 | Msa0781750:intron | 35.0% | |
| !! | TTTCTTTTTCACATTGCTGC+AGG | - | chr5_2:64338239-64338258 | Msa0781750:intron | 35.0% |
| AATGAAAAGAGAGACGATGA+TGG | + | chr5_2:64338340-64338359 | None:intergenic | 35.0% | |
| ! | CGTCTCTCTTTTCATTTCTT+TGG | - | chr5_2:64338344-64338363 | Msa0781750:CDS | 35.0% |
| ! | CTCTCTTTTCATTTCTTTGG+CGG | - | chr5_2:64338347-64338366 | Msa0781750:CDS | 35.0% |
| TAATTTCGACTGTTGTGTTC+TGG | - | chr5_2:64338448-64338467 | Msa0781750:CDS | 35.0% | |
| CATTATTTCAGATCGTCGAT+TGG | - | chr5_2:64338693-64338712 | Msa0781750:intron | 35.0% | |
| TCTATACATACACACACTTC+GGG | + | chr5_2:64338763-64338782 | None:intergenic | 35.0% | |
| TATGAAACATTGACACACAC+AGG | - | chr5_2:64338913-64338932 | Msa0781750:intron | 35.0% | |
| !! | CTGTTTTTCTGTGTTTGTGT+TGG | + | chr5_2:64338946-64338965 | None:intergenic | 35.0% |
| CAACACAAACACAGAAAAAC+AGG | - | chr5_2:64338944-64338963 | Msa0781750:intron | 35.0% | |
| GTCTCAGCACTCAAAATAAT+TGG | + | chr5_2:64339122-64339141 | None:intergenic | 35.0% | |
| TGAATACCAGAATTACCTGA+TGG | - | chr5_2:64339163-64339182 | Msa0781750:intron | 35.0% | |
| !! | ACAGTCATGATTTTGGGAAT+AGG | - | chr5_2:64339251-64339270 | Msa0781750:intron | 35.0% |
| AGTAGTTGATCTTCATCCAA+CGG | - | chr5_2:64339344-64339363 | Msa0781750:intron | 35.0% | |
| ! | TAGACCTAAGTTTTTGCAGT+CGG | + | chr5_2:64339380-64339399 | None:intergenic | 35.0% |
| TGAAAATAATACGAGCAGGA+TGG | - | chr5_2:64339594-64339613 | Msa0781750:intron | 35.0% | |
| GAAAATAATACGAGCAGGAT+GGG | - | chr5_2:64339595-64339614 | Msa0781750:intron | 35.0% | |
| ! | TTGGATTCTTTTGTACTGCA+TGG | - | chr5_2:64339618-64339637 | Msa0781750:intron | 35.0% |
| ! | ATGAGTGTTTTGCAAATCCA+AGG | + | chr5_2:64339661-64339680 | None:intergenic | 35.0% |
| ! | TCAAATTATTCTGCTGCTTG+GGG | - | chr5_2:64339704-64339723 | Msa0781750:intron | 35.0% |
| AATGTTTGTGTGAATGGTTG+CGG | + | chr5_2:64339733-64339752 | None:intergenic | 35.0% | |
| AATCGGAATGTTTGTGTGAA+TGG | + | chr5_2:64339739-64339758 | None:intergenic | 35.0% | |
| TTCACACAAACATTCCGATT+AGG | - | chr5_2:64339739-64339758 | Msa0781750:intron | 35.0% | |
| CTTATGCATTGAGTTACATG+TGG | - | chr5_2:64339781-64339800 | Msa0781750:intron | 35.0% | |
| ACAATACCAGGTAATTACGT+AGG | + | chr5_2:64339994-64340013 | None:intergenic | 35.0% | |
| ! | AGCTTAAGTTGTACAATACC+AGG | + | chr5_2:64340006-64340025 | None:intergenic | 35.0% |
| AACTGAAAAGATGGCAGAGA+AGG | - | chr5_2:64336722-64336741 | Msa0781750:three_prime_UTR | 40.0% | |
| AAGATGGCAGAGAAGGAAAA+CGG | - | chr5_2:64336729-64336748 | Msa0781750:three_prime_UTR | 40.0% | |
| CTAGAAGCTTCGGGAATATA+AGG | + | chr5_2:64336873-64336892 | None:intergenic | 40.0% | |
| ! | GTGTAGTTTCTAGAAGCTTC+GGG | + | chr5_2:64336882-64336901 | None:intergenic | 40.0% |
| TTAACTTAGCTTAGCTGGGA+AGG | - | chr5_2:64337304-64337323 | Msa0781750:intron | 40.0% | |
| ATTTGCAACATGCAAGAGTC+GGG | - | chr5_2:64337336-64337355 | Msa0781750:intron | 40.0% | |
| TCCTGGATTTCCCACTTATT+CGG | - | chr5_2:64337366-64337385 | Msa0781750:intron | 40.0% | |
| ! | ACCAATTTTCCCTACACCTA+CGG | + | chr5_2:64337501-64337520 | None:intergenic | 40.0% |
| GGTTGCATTAACGATTGGAA+TGG | - | chr5_2:64337556-64337575 | Msa0781750:intron | 40.0% | |
| GTTTCACAGTTAAGCACATC+AGG | + | chr5_2:64337723-64337742 | None:intergenic | 40.0% | |
| CGGAGTAGTTAGTTAGTATG+TGG | - | chr5_2:64337880-64337899 | Msa0781750:intron | 40.0% | |
| GTTGCTCTTTGTTAATCGGA+TGG | - | chr5_2:64337993-64338012 | Msa0781750:intron | 40.0% | |
| ! | TTTTTCACATTGCTGCAGGT+TGG | - | chr5_2:64338243-64338262 | Msa0781750:intron | 40.0% |
| ! | TTTTCACATTGCTGCAGGTT+GGG | - | chr5_2:64338244-64338263 | Msa0781750:intron | 40.0% |
| ! | GAAGGAGAAGCATAAAGGTA+AGG | + | chr5_2:64338299-64338318 | None:intergenic | 40.0% |
| TACCTTTATGCTTCTCCTTC+TGG | - | chr5_2:64338299-64338318 | Msa0781750:intron | 40.0% | |
| ! | AACCAGAAGGAGAAGCATAA+AGG | + | chr5_2:64338304-64338323 | None:intergenic | 40.0% |
| ! | CATTGATAGTTGCAACCAGA+AGG | + | chr5_2:64338317-64338336 | None:intergenic | 40.0% |
| TGCAGTTATCAGAATAGCCA+TGG | + | chr5_2:64338478-64338497 | None:intergenic | 40.0% | |
| ATGGCTATTCTGATAACTGC+AGG | - | chr5_2:64338477-64338496 | Msa0781750:CDS | 40.0% | |
| TACAGGGTAATGCAACAAAC+TGG | + | chr5_2:64338720-64338739 | None:intergenic | 40.0% | |
| ACACACACATACACACACTT+CGG | + | chr5_2:64338803-64338822 | None:intergenic | 40.0% | |
| CTATTTAGCATCAACACCTC+AGG | + | chr5_2:64339038-64339057 | None:intergenic | 40.0% | |
| !! | CTGAGGTGTTGATGCTAAAT+AGG | - | chr5_2:64339036-64339055 | Msa0781750:intron | 40.0% |
| TTCCTAATGTGCGGTGATTA+AGG | + | chr5_2:64339082-64339101 | None:intergenic | 40.0% | |
| ! | TTCACCGACTGCAAAAACTT+AGG | - | chr5_2:64339373-64339392 | Msa0781750:intron | 40.0% |
| ! | CATTGCATTTGACTTCAGAG+TGG | + | chr5_2:64339481-64339500 | None:intergenic | 40.0% |
| AAACACTCATTAAGCGTGAG+TGG | - | chr5_2:64339671-64339690 | Msa0781750:intron | 40.0% | |
| CAGAAACTTCTTCTGTTGAC+TGG | - | chr5_2:64339818-64339837 | Msa0781750:intron | 40.0% | |
| ATCGAAACCAAACAGTGAGT+GGG | + | chr5_2:64339857-64339876 | None:intergenic | 40.0% | |
| !! | GCAGTGTTGATAAGATATGC+TGG | - | chr5_2:64339910-64339929 | Msa0781750:CDS | 40.0% |
| ! | TGTTAGCCTACGTAATTACC+TGG | - | chr5_2:64339985-64340004 | Msa0781750:CDS | 40.0% |
| TGCATGAAACTGCATTTGTG+TGG | - | chr5_2:64340026-64340045 | Msa0781750:CDS | 40.0% | |
| TATTCAGTTGAAACCAGAGC+AGG | - | chr5_2:64340161-64340180 | Msa0781750:five_prime_UTR | 40.0% | |
| GGGAATATAAGGAGAGAGTG+AGG | + | chr5_2:64336862-64336881 | None:intergenic | 45.0% | |
| TCGACCTCTCCTTCTCATTT+CGG | - | chr5_2:64336941-64336960 | Msa0781750:three_prime_UTR | 45.0% | |
| CTCTCCTTCTCATTTCGGTT+CGG | - | chr5_2:64336946-64336965 | Msa0781750:three_prime_UTR | 45.0% | |
| GTAACCGAACCGAAATGAGA+AGG | + | chr5_2:64336953-64336972 | None:intergenic | 45.0% | |
| TTTGCAACATGCAAGAGTCG+GGG | - | chr5_2:64337337-64337356 | Msa0781750:intron | 45.0% | |
| CCTGGATTTCCCACTTATTC+GGG | - | chr5_2:64337367-64337386 | Msa0781750:intron | 45.0% | |
| TTGTTGGTCAAGTAGGCTAG+TGG | + | chr5_2:64337404-64337423 | None:intergenic | 45.0% | |
| ! | CCAATTTTCCCTACACCTAC+GGG | + | chr5_2:64337500-64337519 | None:intergenic | 45.0% |
| CTATAATGCGACTACAGCTG+AGG | + | chr5_2:64337629-64337648 | None:intergenic | 45.0% | |
| CTCAGTCTAGATTGTGGTTG+TGG | - | chr5_2:64337677-64337696 | Msa0781750:intron | 45.0% | |
| TCTAGATTGTGGTTGTGGAC+AGG | - | chr5_2:64337682-64337701 | Msa0781750:intron | 45.0% | |
| TTGCAGGAAACACAACCAGA+AGG | + | chr5_2:64338043-64338062 | None:intergenic | 45.0% | |
| ATTGCTCTTGTTGCCTTGAC+AGG | - | chr5_2:64338270-64338289 | Msa0781750:intron | 45.0% | |
| AAAGGTAAGGAGTCCTGTCA+AGG | + | chr5_2:64338286-64338305 | None:intergenic | 45.0% | |
| TTCATTTCTTTGGCGGTAGC+CGG | - | chr5_2:64338354-64338373 | Msa0781750:CDS | 45.0% | |
| GAAAAGAGCCAAGAATCCTC+CGG | + | chr5_2:64338376-64338395 | None:intergenic | 45.0% | |
| ! | TGTTGTGTTCTGGACAACCA+TGG | - | chr5_2:64338458-64338477 | Msa0781750:CDS | 45.0% |
| CACACACATACACACACTTC+GGG | + | chr5_2:64338802-64338821 | None:intergenic | 45.0% | |
| GTGTGTGTATGTGTGTGTTC+TGG | - | chr5_2:64338805-64338824 | Msa0781750:intron | 45.0% | |
| ATACACTGACAGTCTGACAC+CGG | - | chr5_2:64338988-64339007 | Msa0781750:intron | 45.0% | |
| TTAGCATCAACACCTCAGGT+TGG | + | chr5_2:64339034-64339053 | None:intergenic | 45.0% | |
| CTCCTTAATCACCGCACATT+AGG | - | chr5_2:64339077-64339096 | Msa0781750:intron | 45.0% | |
| ! | CATTTGACTTCAGAGTGGCA+AGG | + | chr5_2:64339476-64339495 | None:intergenic | 45.0% |
| ATAATACGAGCAGGATGGGT+TGG | - | chr5_2:64339599-64339618 | Msa0781750:intron | 45.0% | |
| TTGATTGCTAGCAAGAGCCT+TGG | - | chr5_2:64339641-64339660 | Msa0781750:intron | 45.0% | |
| CCAAACAGTGAGTGGGATTT+GGG | + | chr5_2:64339850-64339869 | None:intergenic | 45.0% | |
| ACCAAACAGTGAGTGGGATT+TGG | + | chr5_2:64339851-64339870 | None:intergenic | 45.0% | |
| CATCGAAACCAAACAGTGAG+TGG | + | chr5_2:64339858-64339877 | None:intergenic | 45.0% | |
| ! | CACTCACTGTTTGGTTTCGA+TGG | - | chr5_2:64339856-64339875 | Msa0781750:intron | 45.0% |
| GACGAGTCCAACGAAGAACA+CGG | + | chr5_2:64336908-64336927 | None:intergenic | 50.0% | |
| GTTCTTCGTTGGACTCGTCA+AGG | - | chr5_2:64336909-64336928 | Msa0781750:three_prime_UTR | 50.0% | |
| CGAACCGAAATGAGAAGGAG+AGG | + | chr5_2:64336948-64336967 | None:intergenic | 50.0% | |
| AAGAGTCGGGGTTTCAATCC+TGG | - | chr5_2:64337349-64337368 | Msa0781750:intron | 50.0% | |
| CCCGAATAAGTGGGAAATCC+AGG | + | chr5_2:64337370-64337389 | None:intergenic | 50.0% | |
| CCCGTAGGTGTAGGGAAAAT+TGG | - | chr5_2:64337497-64337516 | Msa0781750:intron | 50.0% | |
| ! | ATGTCGTGAGGGGGTGTAAT+GGG | + | chr5_2:64337940-64337959 | None:intergenic | 50.0% |
| CCAATAGTGATGTCGTGAGG+GGG | + | chr5_2:64337949-64337968 | None:intergenic | 50.0% | |
| CCCAATAGTGATGTCGTGAG+GGG | + | chr5_2:64337950-64337969 | None:intergenic | 50.0% | |
| CCCCTCACGACATCACTATT+GGG | - | chr5_2:64337947-64337966 | Msa0781750:intron | 50.0% | |
| GCCCAATAGTGATGTCGTGA+GGG | + | chr5_2:64337951-64337970 | None:intergenic | 50.0% | |
| AGCCCAATAGTGATGTCGTG+AGG | + | chr5_2:64337952-64337971 | None:intergenic | 50.0% | |
| ACGACATCACTATTGGGCTC+TGG | - | chr5_2:64337953-64337972 | Msa0781750:intron | 50.0% | |
| AGTCGGTGAATGTCAACCGT+TGG | + | chr5_2:64339363-64339382 | None:intergenic | 50.0% | |
| TCCGATTAGGAGCTGATCAC+AGG | - | chr5_2:64339752-64339771 | Msa0781750:intron | 50.0% | |
| GCCTGTGATCAGCTCCTAAT+CGG | + | chr5_2:64339756-64339775 | None:intergenic | 50.0% | |
| ATTAGGAGCTGATCACAGGC+AGG | - | chr5_2:64339756-64339775 | Msa0781750:intron | 50.0% | |
| CCCAAATCCCACTCACTGTT+TGG | - | chr5_2:64339847-64339866 | Msa0781750:intron | 50.0% | |
| ACACTCGCCGTGTTCTTCGT+TGG | - | chr5_2:64336898-64336917 | Msa0781750:three_prime_UTR | 55.0% | |
| ! | GATGTCGTGAGGGGGTGTAA+TGG | + | chr5_2:64337941-64337960 | None:intergenic | 55.0% |
| CCCCCTCACGACATCACTAT+TGG | - | chr5_2:64337946-64337965 | Msa0781750:intron | 55.0% | |
| ATTTCTTTGGCGGTAGCCGG+AGG | - | chr5_2:64338357-64338376 | Msa0781750:CDS | 55.0% | |
| !! | GCATCAACACCTCAGGTTGG+AGG | + | chr5_2:64339031-64339050 | None:intergenic | 55.0% |
| GCGGTGATTAAGGAGTTCCG+AGG | + | chr5_2:64339072-64339091 | None:intergenic | 55.0% | |
| TGCAGATGTAGCCACTGCAG+AGG | - | chr5_2:64339409-64339428 | Msa0781750:intron | 55.0% | |
| TAGCCACTGCAGAGGTTCTG+TGG | - | chr5_2:64339417-64339436 | Msa0781750:intron | 55.0% | |
| CTACCACAGAACCTCTGCAG+TGG | + | chr5_2:64339423-64339442 | None:intergenic | 55.0% | |
| TGTCGCAGCCCGTAGGTGTA+GGG | - | chr5_2:64337489-64337508 | Msa0781750:intron | 60.0% | |
| GGTGTGTGCGAGTGTCTGAC+CGG | + | chr5_2:64339010-64339029 | None:intergenic | 60.0% | |
| TCGCACACACCTCCAACCTG+AGG | - | chr5_2:64339019-64339038 | Msa0781750:intron | 60.0% | |
| GTGTCGCAGCCCGTAGGTGT+AGG | - | chr5_2:64337488-64337507 | Msa0781750:intron | 65.0% | |
| GGCGGTAGCCGGAGGATTCT+TGG | - | chr5_2:64338365-64338384 | Msa0781750:CDS | 65.0% | |
| ! | AACCGGGTGTCGCAGCCCGT+AGG | - | chr5_2:64337482-64337501 | Msa0781750:intron | 70.0% |
| ! | CACCTACGGGCTGCGACACC+CGG | + | chr5_2:64337487-64337506 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 64336650 | 64340190 | 64336650 | ID=Msa0781750;Name=Msa0781750 |
| chr5_2 | mRNA | 64336650 | 64340190 | 64336650 | ID=Msa0781750-mRNA-1;Parent=Msa0781750;Name=Msa0781750-mRNA-1;_AED=0.39;_eAED=0.39;_QI=82|1|1|1|1|1|3|430|205 |
| chr5_2 | exon | 64336650 | 64337228 | 64336650 | ID=Msa0781750-mRNA-1:exon:19239;Parent=Msa0781750-mRNA-1 |
| chr5_2 | exon | 64338342 | 64338579 | 64338342 | ID=Msa0781750-mRNA-1:exon:19238;Parent=Msa0781750-mRNA-1 |
| chr5_2 | exon | 64339878 | 64340190 | 64339878 | ID=Msa0781750-mRNA-1:exon:19237;Parent=Msa0781750-mRNA-1 |
| chr5_2 | five_prime_UTR | 64340109 | 64340190 | 64340109 | ID=Msa0781750-mRNA-1:five_prime_utr;Parent=Msa0781750-mRNA-1 |
| chr5_2 | CDS | 64339878 | 64340108 | 64339878 | ID=Msa0781750-mRNA-1:cds;Parent=Msa0781750-mRNA-1 |
| chr5_2 | CDS | 64338342 | 64338579 | 64338342 | ID=Msa0781750-mRNA-1:cds;Parent=Msa0781750-mRNA-1 |
| chr5_2 | CDS | 64337080 | 64337228 | 64337080 | ID=Msa0781750-mRNA-1:cds;Parent=Msa0781750-mRNA-1 |
| chr5_2 | three_prime_UTR | 64336650 | 64337079 | 64336650 | ID=Msa0781750-mRNA-1:three_prime_utr;Parent=Msa0781750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
