AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0764130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 33 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGAGGTCGTCGGGGATTG+GGG 0.228861 5_2:-23647897 None:intergenic
ACTCGAGGTCGTCGGGGATT+GGG 0.272803 5_2:-23647898 None:intergenic
GTCGTCGTAGCGTGCGTTCA+TGG 0.308557 5_2:+23648238 Msa0764130:intron
AGTAGAGATATGGGATTTCT+TGG 0.308881 5_2:+23647866 Msa0764130:exon
TTCTTACATTGTTTATCTAC+TGG 0.333765 5_2:+23651889 Msa0764130:CDS
ATCGCTCTCGCCTTCTGCTT+TGG 0.354959 5_2:+23647962 Msa0764130:CDS
AGCGGGATAGAGTAGAGATA+TGG 0.365339 5_2:+23647856 Msa0764130:exon
TATGGCTCAGATGATGCTTC+TGG 0.372354 5_2:+23651940 Msa0764130:CDS
AACTCGAGGTCGTCGGGGAT+TGG 0.372428 5_2:-23647899 None:intergenic
ATTCTTAATGCTGCACATAA+TGG 0.381497 5_2:+23648263 Msa0764130:CDS
AGCGCATCAGATTGTCGTTA+TGG 0.409289 5_2:+23651922 Msa0764130:CDS
GGAGATAACTCGAGGTCGTC+GGG 0.416866 5_2:-23647905 None:intergenic
TCGAGGTCGTCGGGGATTGG+GGG 0.444858 5_2:-23647896 None:intergenic
ATGGCACTACCGATCCTTCT+CGG 0.445701 5_2:+23648282 Msa0764130:CDS
CAACTATTTGTTACCCGAGA+AGG 0.474408 5_2:-23648296 None:intergenic
GCGGGATAGAGTAGAGATAT+GGG 0.488043 5_2:+23647857 Msa0764130:exon
TGGCACTACCGATCCTTCTC+GGG 0.498527 5_2:+23648283 Msa0764130:CDS
AAGCAGAAGGCGAGAGCGAT+CGG 0.498878 5_2:-23647959 None:intergenic
CTCGCCTTCTGCTTTGGTGT+AGG 0.509998 5_2:+23647968 Msa0764130:CDS
CTTGACTTCTTTGTACCATA+CGG 0.516923 5_2:-23648092 None:intergenic
TAGGTCATGTTACCTCCGTA+TGG 0.521416 5_2:+23648077 Msa0764130:intron
CGAGGTCGTCGGGGATTGGG+GGG 0.522647 5_2:-23647895 None:intergenic
CTGATGAAGCGAATTTGAGC+GGG 0.536765 5_2:-23647926 None:intergenic
TTACATTGTTTATCTACTGG+AGG 0.553435 5_2:+23651892 Msa0764130:CDS
GGGAGATAACTCGAGGTCGT+CGG 0.564364 5_2:-23647906 None:intergenic
ATTTGTTACCCGAGAAGGAT+CGG 0.572337 5_2:-23648291 None:intergenic
CTCAGATGATGCTTCTGGAA+TGG 0.589832 5_2:+23651945 Msa0764130:CDS
CCTTAAAATCGTAAACGACA+TGG 0.601425 5_2:-23648120 None:intergenic
ACATCCTACACCAAAGCAGA+AGG 0.604708 5_2:-23647972 None:intergenic
GACTTCTTTGTACCATACGG+AGG 0.618984 5_2:-23648089 None:intergenic
TCTGATGAAGCGAATTTGAG+CGG 0.624893 5_2:-23647927 None:intergenic
GAGATAACTCGAGGTCGTCG+GGG 0.698069 5_2:-23647904 None:intergenic
TTTGAGCGGGAGATAACTCG+AGG 0.703118 5_2:-23647913 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATAAAATTGTTGTA+TGG - chr5_2:23648903-23648922 None:intergenic 10.0%
!! GCATAAAATTTAATAAATAT+AGG - chr5_2:23651029-23651048 None:intergenic 10.0%
!! TGTAAAAAATTTAGAAAAAG+AGG + chr5_2:23648720-23648739 Msa0764130:intron 15.0%
!!! TGAATTAATTTGGAATTTTT+CGG - chr5_2:23649110-23649129 None:intergenic 15.0%
!! ATTGATAAAAAAAATTAGTG+TGG + chr5_2:23649182-23649201 Msa0764130:intron 15.0%
!!! ATGATATATAATTTTTGTGA+AGG + chr5_2:23649297-23649316 Msa0764130:intron 15.0%
!! AAAATTAGAATGTAATACTT+AGG + chr5_2:23649736-23649755 Msa0764130:intron 15.0%
!!! ATCATTTTTTAAATAAACCT+TGG + chr5_2:23650019-23650038 Msa0764130:intron 15.0%
!!! TCATTTTTTAAATAAACCTT+GGG + chr5_2:23650020-23650039 Msa0764130:intron 15.0%
!! TTTGATTAAGAAAAAAGAAA+AGG - chr5_2:23650067-23650086 None:intergenic 15.0%
!! AATTAGTTATTTGCAAAATA+TGG - chr5_2:23650118-23650137 None:intergenic 15.0%
!!! TTGATTTTAAGTTTGAAAAT+TGG - chr5_2:23650201-23650220 None:intergenic 15.0%
!!! AAAAATGTTTTTGTTTTTGT+TGG - chr5_2:23650224-23650243 None:intergenic 15.0%
!!! AACAAAAACAAAAACATTTT+TGG + chr5_2:23650223-23650242 Msa0764130:intron 15.0%
!!! TTTTATTTTAGTTGAATTGA+AGG - chr5_2:23650305-23650324 None:intergenic 15.0%
!! ACATAGTAATAATAATTCTT+TGG + chr5_2:23650798-23650817 Msa0764130:intron 15.0%
!! GTTAGTTATATATAATAGAT+TGG + chr5_2:23651417-23651436 Msa0764130:intron 15.0%
!! TGTTTGTTTGTTTGTATATT+TGG + chr5_2:23648216-23648235 Msa0764130:intron 20.0%
!!! TATCAATTGATAATACAAAG+AGG - chr5_2:23648351-23648370 None:intergenic 20.0%
!! GAAAAACGTATGAATTAATT+TGG - chr5_2:23649120-23649139 None:intergenic 20.0%
!!! GATTTTATGTTAAAAACTTG+TGG + chr5_2:23649227-23649246 Msa0764130:intron 20.0%
!! AAATTCACTATTAAAATGCA+TGG + chr5_2:23649422-23649441 Msa0764130:intron 20.0%
!!! TGTCTTTAAAATGTGTTAAA+AGG + chr5_2:23649487-23649506 Msa0764130:intron 20.0%
!! TTAAGAAACATGAAACAAAA+GGG - chr5_2:23649665-23649684 None:intergenic 20.0%
!!! GAAGTTTGTTCATATTTTTT+TGG - chr5_2:23649993-23650012 None:intergenic 20.0%
!! AAAGAAAAGGAAAATACAAT+GGG - chr5_2:23650054-23650073 None:intergenic 20.0%
!! AAAAGAAAAGGAAAATACAA+TGG - chr5_2:23650055-23650074 None:intergenic 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG - chr5_2:23650541-23650560 None:intergenic 20.0%
!! AAGAAAAAATAAGATATCAC+CGG + chr5_2:23650541-23650560 Msa0764130:intron 20.0%
!!! TAAATTTGAACCTTTTTAAC+CGG - chr5_2:23650563-23650582 None:intergenic 20.0%
!!! TGTTTTTTTTTTCTTGGTTT+TGG + chr5_2:23650843-23650862 Msa0764130:intron 20.0%
!!! GATGCAAAAGTATTAAAAAA+TGG - chr5_2:23651007-23651026 None:intergenic 20.0%
!!! ACTAATTTTTGAGAAAAGAA+TGG - chr5_2:23651384-23651403 None:intergenic 20.0%
!! AGTTATATATAATAGATTGG+AGG + chr5_2:23651420-23651439 Msa0764130:intron 20.0%
!! GTTATATATAATAGATTGGA+GGG + chr5_2:23651421-23651440 Msa0764130:intron 20.0%
!! GAAATATTGTTTATCTATCA+TGG + chr5_2:23651482-23651501 Msa0764130:intron 20.0%
!! ATAAACAATATGTTTAGATC+AGG - chr5_2:23651543-23651562 None:intergenic 20.0%
!!! AAACTTTTGAACATATATAG+AGG + chr5_2:23651585-23651604 Msa0764130:intron 20.0%
!! ATAGAATTCACAAATATACA+TGG - chr5_2:23651833-23651852 None:intergenic 20.0%
! GAAAAAGAATGAAAATGGAT+TGG - chr5_2:23648172-23648191 None:intergenic 25.0%
! TAGAGGAAAAAGAATGAAAA+TGG - chr5_2:23648177-23648196 None:intergenic 25.0%
! AAAAACTAAATATCAAAGCC+TGG - chr5_2:23648649-23648668 None:intergenic 25.0%
!!! AGGCTTTGATATTTAGTTTT+TGG + chr5_2:23648648-23648667 Msa0764130:intron 25.0%
! ACAGCAAGAAAACAATTAAA+AGG - chr5_2:23649060-23649079 None:intergenic 25.0%
!! TTTGTGGTCTTTTATGATAT+TGG + chr5_2:23649148-23649167 Msa0764130:intron 25.0%
! ATGAACTCAGATTGTAAAAT+GGG - chr5_2:23649468-23649487 None:intergenic 25.0%
! TTAAAATGTGTTAAAAGGTG+AGG + chr5_2:23649492-23649511 Msa0764130:intron 25.0%
! CTTAAGAAACATGAAACAAA+AGG - chr5_2:23649666-23649685 None:intergenic 25.0%
! TTAAAGTGCAAGAAATAAAG+TGG - chr5_2:23649706-23649725 None:intergenic 25.0%
!! TTCTAGCTATATATCTAAAG+TGG - chr5_2:23649894-23649913 None:intergenic 25.0%
! GTATGTTTAGATGAATGATT+AGG + chr5_2:23649943-23649962 Msa0764130:intron 25.0%
! AAGTATGATTAAGGTTCATT+TGG - chr5_2:23650092-23650111 None:intergenic 25.0%
! AAATGAACCTTAATCATACT+TGG + chr5_2:23650091-23650110 Msa0764130:intron 25.0%
! GAAAATTGGAATTTGAAGAA+TGG - chr5_2:23650187-23650206 None:intergenic 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG - chr5_2:23650536-23650555 None:intergenic 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG - chr5_2:23650537-23650556 None:intergenic 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG - chr5_2:23650542-23650561 None:intergenic 25.0%
!!! CAAGTGTGTTTTTTTTTTCT+TGG + chr5_2:23650837-23650856 Msa0764130:intron 25.0%
!!! ATACTTTGAAACTGATGAAA+AGG + chr5_2:23650967-23650986 Msa0764130:intron 25.0%
!! TAATTTGCAAATGTAGTGAA+TGG + chr5_2:23651213-23651232 Msa0764130:intron 25.0%
!! TGAACATATATAGAGGTATA+AGG + chr5_2:23651592-23651611 Msa0764130:intron 25.0%
! TTAGAATAACCGAAATGAAA+AGG - chr5_2:23651651-23651670 None:intergenic 25.0%
!!! AAATGATGTTTGAAAGCATT+GGG + chr5_2:23651687-23651706 Msa0764130:intron 25.0%
!! GTCATTTAAAATTGAAAGTG+CGG + chr5_2:23651764-23651783 Msa0764130:intron 25.0%
!!! TTCATTGATTTTCCAATTGA+CGG - chr5_2:23651807-23651826 None:intergenic 25.0%
! TTCTTACATTGTTTATCTAC+TGG + chr5_2:23651889-23651908 Msa0764130:CDS 25.0%
! TCTCATTCCTTTTTCCTTTT+AGG + chr5_2:23648058-23648077 Msa0764130:intron 30.0%
AACATGACCTAAAAGGAAAA+AGG - chr5_2:23648068-23648087 None:intergenic 30.0%
GTTAGTTAGTTAGTTAGTAG+AGG - chr5_2:23648194-23648213 None:intergenic 30.0%
ATTCTTAATGCTGCACATAA+TGG + chr5_2:23648263-23648282 Msa0764130:CDS 30.0%
! NNTAAGGTCTCTGAAAGTTT+GGG - chr5_2:23648421-23648440 None:intergenic 30.0%
! NNNTAAGGTCTCTGAAAGTT+TGG - chr5_2:23648422-23648441 None:intergenic 30.0%
TTGTGTGAAGATTTGAATAG+AGG + chr5_2:23648676-23648695 Msa0764130:intron 30.0%
AGTATACGTGAAAGAAGAAA+AGG + chr5_2:23648854-23648873 Msa0764130:intron 30.0%
! AGAAAACAATTAAAAGGCAC+AGG - chr5_2:23649054-23649073 None:intergenic 30.0%
! CGTTTTTCTTCTATCTTTTG+TGG + chr5_2:23649132-23649151 Msa0764130:intron 30.0%
CAAGAATTGGAATCGAAATT+AGG - chr5_2:23649260-23649279 None:intergenic 30.0%
CTAATTTCGATTCCAATTCT+TGG + chr5_2:23649258-23649277 Msa0764130:intron 30.0%
TGAACTCAGATTGTAAAATG+GGG - chr5_2:23649467-23649486 None:intergenic 30.0%
CATGAACTCAGATTGTAAAA+TGG - chr5_2:23649469-23649488 None:intergenic 30.0%
AAATCCTACTACAAAATGCA+AGG - chr5_2:23649535-23649554 None:intergenic 30.0%
!! TCATTTTCGCTATGTTTTTG+TGG + chr5_2:23649570-23649589 Msa0764130:intron 30.0%
AAGAAATAAAGTGGAAATGG+AGG - chr5_2:23649697-23649716 None:intergenic 30.0%
TGCAAGAAATAAAGTGGAAA+TGG - chr5_2:23649700-23649719 None:intergenic 30.0%
CATTGTCCTTATTACATCAT+TGG - chr5_2:23649824-23649843 None:intergenic 30.0%
CAATGATGTAATAAGGACAA+TGG + chr5_2:23649822-23649841 Msa0764130:intron 30.0%
GCATGTTTAGATGTATGTTT+AGG + chr5_2:23649917-23649936 Msa0764130:intron 30.0%
ATATGGTCCAAGTATGATTA+AGG - chr5_2:23650101-23650120 None:intergenic 30.0%
!! ACATTTTTGGAAGAGAACTA+CGG + chr5_2:23650236-23650255 Msa0764130:intron 30.0%
TTTCTAAGTGAAGAATTGGA+GGG - chr5_2:23650346-23650365 None:intergenic 30.0%
AGAGTTTCTAAGTGAAGAAT+TGG - chr5_2:23650350-23650369 None:intergenic 30.0%
TTCTTCACTTAGAAACTCTT+AGG + chr5_2:23650351-23650370 Msa0764130:intron 30.0%
AAATTAAAGACGGTTCCTAT+AGG + chr5_2:23650423-23650442 Msa0764130:intron 30.0%
TAACGACTATAGTATCCTAT+AGG - chr5_2:23650441-23650460 None:intergenic 30.0%
ATAGGATACTATAGTCGTTA+CGG + chr5_2:23650441-23650460 Msa0764130:intron 30.0%
! TAAGATATCACCGGTTAAAA+AGG + chr5_2:23650550-23650569 Msa0764130:intron 30.0%
!! TGTGTTTTATCTTGGTTTTC+GGG - chr5_2:23650600-23650619 None:intergenic 30.0%
!! CTGTGTTTTATCTTGGTTTT+CGG - chr5_2:23650601-23650620 None:intergenic 30.0%
!! TTGTGCTTATTTTTCTTCTC+CGG + chr5_2:23650894-23650913 Msa0764130:intron 30.0%
! ATGAAAAGGTATGTAGTACT+TGG + chr5_2:23650981-23651000 Msa0764130:intron 30.0%
!! CAGATTTGTTATACAGTACT+TGG + chr5_2:23651064-23651083 Msa0764130:intron 30.0%
! AAGTCAGTTTTCTCAACTAA+GGG + chr5_2:23651155-23651174 Msa0764130:intron 30.0%
TTTCATCCAAAACTTTCTTC+TGG + chr5_2:23651318-23651337 Msa0764130:intron 30.0%
AACACAAGCATAATGCATTT+AGG + chr5_2:23651460-23651479 Msa0764130:intron 30.0%
! GGTATTTCTCCTTTTCATTT+CGG + chr5_2:23651639-23651658 Msa0764130:intron 30.0%
! CAAATGATGTTTGAAAGCAT+TGG + chr5_2:23651686-23651705 Msa0764130:intron 30.0%
!!! TCATTGATTTTCCAATTGAC+GGG - chr5_2:23651806-23651825 None:intergenic 30.0%
GTCAATTGGAAAATCAATGA+AGG + chr5_2:23651806-23651825 Msa0764130:intron 30.0%
TTACATTGTTTATCTACTGG+AGG + chr5_2:23651892-23651911 Msa0764130:CDS 30.0%
AGTAGAGATATGGGATTTCT+TGG + chr5_2:23647866-23647885 Msa0764130:exon 35.0%
CTTGACTTCTTTGTACCATA+CGG - chr5_2:23648095-23648114 None:intergenic 35.0%
CCTTAAAATCGTAAACGACA+TGG - chr5_2:23648123-23648142 None:intergenic 35.0%
!! CCATGTCGTTTACGATTTTA+AGG + chr5_2:23648120-23648139 Msa0764130:CDS 35.0%
GAAAGAAGAAAAGGAACACT+TGG + chr5_2:23648863-23648882 Msa0764130:intron 35.0%
GTTTCATGGATCATGGATAT+GGG - chr5_2:23648968-23648987 None:intergenic 35.0%
! AATTAAAAGGCACAGGAATG+GGG - chr5_2:23649047-23649066 None:intergenic 35.0%
! CAATTAAAAGGCACAGGAAT+GGG - chr5_2:23649048-23649067 None:intergenic 35.0%
! ACAATTAAAAGGCACAGGAA+TGG - chr5_2:23649049-23649068 None:intergenic 35.0%
ATTTCGATTCCAATTCTTGG+TGG + chr5_2:23649261-23649280 Msa0764130:intron 35.0%
CAAGAATATCCACCAAGAAT+TGG - chr5_2:23649273-23649292 None:intergenic 35.0%
ATTGTAAAATGGGGACCAAA+GGG - chr5_2:23649458-23649477 None:intergenic 35.0%
! TGAACCTTGCATTTTGTAGT+AGG + chr5_2:23649528-23649547 Msa0764130:intron 35.0%
ATAAAGTGGAAATGGAGGAT+AGG - chr5_2:23649692-23649711 None:intergenic 35.0%
CAAGACCATAGAATGTATCT+AGG + chr5_2:23649798-23649817 Msa0764130:intron 35.0%
! ATTGGCCTAGATACATTCTA+TGG - chr5_2:23649806-23649825 None:intergenic 35.0%
TCTAGGCCAATGATGTAATA+AGG + chr5_2:23649815-23649834 Msa0764130:intron 35.0%
CATGAGATTTAGAAAAGGTG+AGG - chr5_2:23650144-23650163 None:intergenic 35.0%
! AAGGGCATGAGATTTAGAAA+AGG - chr5_2:23650149-23650168 None:intergenic 35.0%
TTTGAAGAATGGAGATTGAG+AGG - chr5_2:23650176-23650195 None:intergenic 35.0%
GTTTCTAAGTGAAGAATTGG+AGG - chr5_2:23650347-23650366 None:intergenic 35.0%
TAGGATACTATAGTCGTTAC+GGG + chr5_2:23650442-23650461 Msa0764130:intron 35.0%
!! AGTGCTACTGTGTTTTATCT+TGG - chr5_2:23650608-23650627 None:intergenic 35.0%
ATATTTGCTTTGTGAGAGTG+TGG + chr5_2:23650654-23650673 Msa0764130:intron 35.0%
TTCCTAACCATAATCACTAC+CGG + chr5_2:23650926-23650945 Msa0764130:intron 35.0%
TTCCAATTTCGATAACTTCC+CGG - chr5_2:23650948-23650967 None:intergenic 35.0%
TACAGTACTTGGTATACCAT+TGG + chr5_2:23651075-23651094 Msa0764130:intron 35.0%
! GGTATACCATTGGTAACATA+CGG + chr5_2:23651085-23651104 Msa0764130:intron 35.0%
! GAAGTCAGTTTTCTCAACTA+AGG + chr5_2:23651154-23651173 Msa0764130:intron 35.0%
GTTTATGCTATTCAGTTCAG+AGG - chr5_2:23651346-23651365 None:intergenic 35.0%
TGGAGGGAAATTAATTGCTT+TGG + chr5_2:23651437-23651456 Msa0764130:intron 35.0%
TTTAGATCAGGTAGACAGTA+CGG - chr5_2:23651531-23651550 None:intergenic 35.0%
ATGAACATTACAGAGATGCT+AGG + chr5_2:23651561-23651580 Msa0764130:intron 35.0%
TGAACATTACAGAGATGCTA+GGG + chr5_2:23651562-23651581 Msa0764130:intron 35.0%
AATGACCTTGTAATAGCCAA+AGG - chr5_2:23651727-23651746 None:intergenic 35.0%
ATAAAAAACCTCCCGTCAAT+TGG + chr5_2:23651792-23651811 Msa0764130:intron 35.0%
! CTATGAGTAGACATTTTGTC+TGG + chr5_2:23651849-23651868 Msa0764130:intron 35.0%
TCTGATGAAGCGAATTTGAG+CGG - chr5_2:23647930-23647949 None:intergenic 40.0%
! ATTTGTTACCCGAGAAGGAT+CGG - chr5_2:23648294-23648313 None:intergenic 40.0%
! CAACTATTTGTTACCCGAGA+AGG - chr5_2:23648299-23648318 None:intergenic 40.0%
ATGCAATGGTGAGAAAGAAG+GGG - chr5_2:23648566-23648585 None:intergenic 40.0%
CATGCAATGGTGAGAAAGAA+GGG - chr5_2:23648567-23648586 None:intergenic 40.0%
ACATGCAATGGTGAGAAAGA+AGG - chr5_2:23648568-23648587 None:intergenic 40.0%
ACGAACACTACAACATGCAA+TGG - chr5_2:23648580-23648599 None:intergenic 40.0%
GATTAGCAATGCATAGATCC+AGG + chr5_2:23648628-23648647 Msa0764130:intron 40.0%
GGTTTCATGGATCATGGATA+TGG - chr5_2:23648969-23648988 None:intergenic 40.0%
ATCATTGGGCTTAGGTTTCA+TGG - chr5_2:23648982-23649001 None:intergenic 40.0%
ACAAGACAATCATTGGGCTT+AGG - chr5_2:23648990-23649009 None:intergenic 40.0%
CATGGCACAAGACAATCATT+GGG - chr5_2:23648996-23649015 None:intergenic 40.0%
! ATTAAAAGGCACAGGAATGG+GGG - chr5_2:23649046-23649065 None:intergenic 40.0%
ATCTTGCAAAGCAAGCAACT+AGG - chr5_2:23649370-23649389 None:intergenic 40.0%
GATTGTAAAATGGGGACCAA+AGG - chr5_2:23649459-23649478 None:intergenic 40.0%
!! ACAATGGGATTTTGATCCCA+AGG - chr5_2:23650039-23650058 None:intergenic 40.0%
GAGATTTAGAAAAGGTGAGG+TGG - chr5_2:23650141-23650160 None:intergenic 40.0%
TTCTAAATCTCATGCCCTTG+AGG + chr5_2:23650150-23650169 Msa0764130:intron 40.0%
!! TTTTTGGAAGAGAACTACGG+TGG + chr5_2:23650239-23650258 Msa0764130:intron 40.0%
! GGTGGATTTGATCCCTTAAA+CGG + chr5_2:23650257-23650276 Msa0764130:intron 40.0%
GTGGATTTGATCCCTTAAAC+GGG + chr5_2:23650258-23650277 Msa0764130:intron 40.0%
GTATTTGCTTTGTGAGAGTG+TGG + chr5_2:23650712-23650731 Msa0764130:intron 40.0%
TTGTACTACTACTGGTGCAT+TGG + chr5_2:23650735-23650754 Msa0764130:intron 40.0%
TGTACTACTACTGGTGCATT+GGG + chr5_2:23650736-23650755 Msa0764130:intron 40.0%
TGGTTAGGAAATAACAGAGC+CGG - chr5_2:23650916-23650935 None:intergenic 40.0%
TCCTAACCATAATCACTACC+GGG + chr5_2:23650927-23650946 Msa0764130:intron 40.0%
TAACTTCCCGGTAGTGATTA+TGG - chr5_2:23650936-23650955 None:intergenic 40.0%
TACCGGGAAGTTATCGAAAT+TGG + chr5_2:23650943-23650962 Msa0764130:intron 40.0%
AAATTACAGCAGAACGTACC+TGG - chr5_2:23651120-23651139 None:intergenic 40.0%
ATACAACTCCTACAGATTGC+TGG + chr5_2:23651618-23651637 Msa0764130:intron 40.0%
GAGAAATACCAGCAATCTGT+AGG - chr5_2:23651629-23651648 None:intergenic 40.0%
TGTAATAGCCAAAGGATCTC+CGG - chr5_2:23651719-23651738 None:intergenic 40.0%
GAGATCCTTTGGCTATTACA+AGG + chr5_2:23651719-23651738 Msa0764130:intron 40.0%
!!! TTGACGGGAGGTTTTTTATC+TGG - chr5_2:23651791-23651810 None:intergenic 40.0%
! TTGATTTTCCAATTGACGGG+AGG - chr5_2:23651803-23651822 None:intergenic 40.0%
AGCGGGATAGAGTAGAGATA+TGG + chr5_2:23647856-23647875 Msa0764130:exon 45.0%
GCGGGATAGAGTAGAGATAT+GGG + chr5_2:23647857-23647876 Msa0764130:exon 45.0%
CTGATGAAGCGAATTTGAGC+GGG - chr5_2:23647929-23647948 None:intergenic 45.0%
ACATCCTACACCAAAGCAGA+AGG - chr5_2:23647975-23647994 None:intergenic 45.0%
CGGAGGTAACATGACCTAAA+AGG - chr5_2:23648075-23648094 None:intergenic 45.0%
TAGGTCATGTTACCTCCGTA+TGG + chr5_2:23648077-23648096 Msa0764130:intron 45.0%
GACTTCTTTGTACCATACGG+AGG - chr5_2:23648092-23648111 None:intergenic 45.0%
GGAGTTTAAAAACTCCGACG+CGG + chr5_2:23648741-23648760 Msa0764130:intron 45.0%
! TGAGCAAAGATTTTCCGACG+CGG - chr5_2:23648785-23648804 None:intergenic 45.0%
TCTTTGCTCACCTGAGAAGA+AGG + chr5_2:23648795-23648814 Msa0764130:intron 45.0%
TGTTCATGAGTTGTGAGGGA+GGG + chr5_2:23648831-23648850 Msa0764130:intron 45.0%
TCCTTCTTTCACTTGACCCA+TGG + chr5_2:23648922-23648941 Msa0764130:intron 45.0%
ACCATGGGTCAAGTGAAAGA+AGG - chr5_2:23648926-23648945 None:intergenic 45.0%
TGGGTATGGGTCAAAACCAT+GGG - chr5_2:23648941-23648960 None:intergenic 45.0%
!! GATCATGGATATGGGTTGGT+GGG - chr5_2:23648960-23648979 None:intergenic 45.0%
CATGGATCATGGATATGGGT+TGG - chr5_2:23648964-23648983 None:intergenic 45.0%
GGCTTAGGTTTCATGGATCA+TGG - chr5_2:23648975-23648994 None:intergenic 45.0%
GCATGGCACAAGACAATCAT+TGG - chr5_2:23648997-23649016 None:intergenic 45.0%
GTATGTAGCAAAATGTGCCC+AGG - chr5_2:23649019-23649038 None:intergenic 45.0%
! TTAAAAGGCACAGGAATGGG+GGG - chr5_2:23649045-23649064 None:intergenic 45.0%
GCAACAAAACACATGCTTGG+GGG - chr5_2:23649088-23649107 None:intergenic 45.0%
GGCAACAAAACACATGCTTG+GGG - chr5_2:23649089-23649108 None:intergenic 45.0%
CGGCAACAAAACACATGCTT+GGG - chr5_2:23649090-23649109 None:intergenic 45.0%
TCGGCAACAAAACACATGCT+TGG - chr5_2:23649091-23649110 None:intergenic 45.0%
TTGCCTACGTACCCGTTTAA+GGG - chr5_2:23650272-23650291 None:intergenic 45.0%
GCGCGCGTAGAAATTAAAGA+CGG + chr5_2:23650413-23650432 Msa0764130:intron 45.0%
AGCAAAACCCTTGAGAATCG+AGG - chr5_2:23650505-23650524 None:intergenic 45.0%
! TTGTGAGAGTGTGGTTGTAC+TGG + chr5_2:23650663-23650682 Msa0764130:intron 45.0%
! TGTGAGAGTGTGGTTGTACT+GGG + chr5_2:23650664-23650683 Msa0764130:intron 45.0%
GAGTGTGGTTGTACTACTAC+TGG + chr5_2:23650727-23650746 Msa0764130:intron 45.0%
GTACTACTACTGGTGCATTG+GGG + chr5_2:23650737-23650756 Msa0764130:intron 45.0%
TACTACTACTGGTGCATTGG+GGG + chr5_2:23650738-23650757 Msa0764130:intron 45.0%
TCCCGGTAGTGATTATGGTT+AGG - chr5_2:23650931-23650950 None:intergenic 45.0%
! GAGGAGCCAGAAGAAAGTTT+TGG - chr5_2:23651327-23651346 None:intergenic 45.0%
!! TGAAAGCATTGGGTGATGAC+CGG + chr5_2:23651697-23651716 Msa0764130:intron 45.0%
AGCGCATCAGATTGTCGTTA+TGG + chr5_2:23651922-23651941 Msa0764130:CDS 45.0%
TATGGCTCAGATGATGCTTC+TGG + chr5_2:23651940-23651959 Msa0764130:CDS 45.0%
! CTCAGATGATGCTTCTGGAA+TGG + chr5_2:23651945-23651964 Msa0764130:CDS 45.0%
TTTGAGCGGGAGATAACTCG+AGG - chr5_2:23647916-23647935 None:intergenic 50.0%
ATGGCACTACCGATCCTTCT+CGG + chr5_2:23648282-23648301 Msa0764130:CDS 50.0%
GTTTAAAAACTCCGACGCGG+TGG + chr5_2:23648744-23648763 Msa0764130:intron 50.0%
TGCTCACCTGAGAAGAAGGT+AGG + chr5_2:23648799-23648818 Msa0764130:intron 50.0%
GCTCACCTGAGAAGAAGGTA+GGG + chr5_2:23648800-23648819 Msa0764130:intron 50.0%
CTCACCTGAGAAGAAGGTAG+GGG + chr5_2:23648801-23648820 Msa0764130:intron 50.0%
TCACCTGAGAAGAAGGTAGG+GGG + chr5_2:23648802-23648821 Msa0764130:intron 50.0%
GCGCTGTTCATGAGTTGTGA+GGG + chr5_2:23648827-23648846 Msa0764130:intron 50.0%
CTGTTCATGAGTTGTGAGGG+AGG + chr5_2:23648830-23648849 Msa0764130:intron 50.0%
GTGGGTATGGGTCAAAACCA+TGG - chr5_2:23648942-23648961 None:intergenic 50.0%
!! GGATATGGGTTGGTGGGTAT+GGG - chr5_2:23648954-23648973 None:intergenic 50.0%
!! TGGATATGGGTTGGTGGGTA+TGG - chr5_2:23648955-23648974 None:intergenic 50.0%
!! GGATCATGGATATGGGTTGG+TGG - chr5_2:23648961-23648980 None:intergenic 50.0%
TGATTGTCTTGTGCCATGCC+TGG + chr5_2:23648998-23649017 Msa0764130:intron 50.0%
GATTGTCTTGTGCCATGCCT+GGG + chr5_2:23648999-23649018 Msa0764130:intron 50.0%
TAGCAAAATGTGCCCAGGCA+TGG - chr5_2:23649014-23649033 None:intergenic 50.0%
! TAAAAGGCACAGGAATGGGG+GGG - chr5_2:23649044-23649063 None:intergenic 50.0%
CATGGTCTATCACGTCCCTT+TGG + chr5_2:23649440-23649459 Msa0764130:intron 50.0%
AGTGGTGTGTGTGCATGTGT+CGG - chr5_2:23649876-23649895 None:intergenic 50.0%
TGGAGATTGAGAGGCCTCAA+GGG - chr5_2:23650167-23650186 None:intergenic 50.0%
ATGGAGATTGAGAGGCCTCA+AGG - chr5_2:23650168-23650187 None:intergenic 50.0%
GATCCCTTAAACGGGTACGT+AGG + chr5_2:23650266-23650285 Msa0764130:intron 50.0%
CTTGCCTACGTACCCGTTTA+AGG - chr5_2:23650273-23650292 None:intergenic 50.0%
CTTAAACGGGTACGTAGGCA+AGG + chr5_2:23650271-23650290 Msa0764130:intron 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG - chr5_2:23650470-23650489 None:intergenic 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG - chr5_2:23650477-23650496 None:intergenic 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG - chr5_2:23650482-23650501 None:intergenic 50.0%
AACCCTTGAGAATCGAGGTC+CGG - chr5_2:23650500-23650519 None:intergenic 50.0%
! GTGAGAGTGTGGTTGTACTG+GGG + chr5_2:23650665-23650684 Msa0764130:intron 50.0%
! TGAGAGTGTGGTTGTACTGG+GGG + chr5_2:23650666-23650685 Msa0764130:intron 50.0%
TGTGGTTGTACTGGGGGATT+GGG + chr5_2:23650672-23650691 Msa0764130:intron 50.0%
CCTGGACCGTATGTTACCAA+TGG - chr5_2:23651094-23651113 None:intergenic 50.0%
! CCATTGGTAACATACGGTCC+AGG + chr5_2:23651091-23651110 Msa0764130:intron 50.0%
ATCAGGTAGACAGTACGGCA+AGG - chr5_2:23651526-23651545 None:intergenic 50.0%
GAGATAACTCGAGGTCGTCG+GGG - chr5_2:23647907-23647926 None:intergenic 55.0%
GGAGATAACTCGAGGTCGTC+GGG - chr5_2:23647908-23647927 None:intergenic 55.0%
GGGAGATAACTCGAGGTCGT+CGG - chr5_2:23647909-23647928 None:intergenic 55.0%
AAGCAGAAGGCGAGAGCGAT+CGG - chr5_2:23647962-23647981 None:intergenic 55.0%
ATCGCTCTCGCCTTCTGCTT+TGG + chr5_2:23647962-23647981 Msa0764130:CDS 55.0%
! CTCGCCTTCTGCTTTGGTGT+AGG + chr5_2:23647968-23647987 Msa0764130:CDS 55.0%
TGGCACTACCGATCCTTCTC+GGG + chr5_2:23648283-23648302 Msa0764130:CDS 55.0%
! GCAAAGATTTTCCGACGCGG+TGG - chr5_2:23648782-23648801 None:intergenic 55.0%
GGCGCTGTTCATGAGTTGTG+AGG + chr5_2:23648826-23648845 Msa0764130:intron 55.0%
! AAAAGGCACAGGAATGGGGG+GGG - chr5_2:23649043-23649062 None:intergenic 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG - chr5_2:23649864-23649883 None:intergenic 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG - chr5_2:23650481-23650500 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG + chr5_2:23650478-23650497 Msa0764130:intron 55.0%
TCCCGGACCTCGATTCTCAA+GGG + chr5_2:23650495-23650514 Msa0764130:intron 55.0%
ACCCTTGAGAATCGAGGTCC+GGG - chr5_2:23650499-23650518 None:intergenic 55.0%
GTGTGGTTGTACTGGGGGAT+TGG + chr5_2:23650671-23650690 Msa0764130:intron 55.0%
GTGGTTGTACTGGGGGATTG+GGG + chr5_2:23650673-23650692 Msa0764130:intron 55.0%
TGGTTGTACTGGGGGATTGG+GGG + chr5_2:23650674-23650693 Msa0764130:intron 55.0%
AACATACGGTCCAGGACTCC+AGG + chr5_2:23651099-23651118 Msa0764130:intron 55.0%
GGTGATGACCGGAGATCCTT+TGG + chr5_2:23651708-23651727 Msa0764130:intron 55.0%
ACTCGAGGTCGTCGGGGATT+GGG - chr5_2:23647901-23647920 None:intergenic 60.0%
AACTCGAGGTCGTCGGGGAT+TGG - chr5_2:23647902-23647921 None:intergenic 60.0%
GTCGTCGTAGCGTGCGTTCA+TGG + chr5_2:23648238-23648257 Msa0764130:intron 60.0%
! AGATTTTCCGACGCGGTGGC+CGG - chr5_2:23648778-23648797 None:intergenic 60.0%
CCTGAGAAGAAGGTAGGGGG+CGG + chr5_2:23648805-23648824 Msa0764130:intron 60.0%
CTCCCGGACCTCGATTCTCA+AGG + chr5_2:23650494-23650513 Msa0764130:intron 60.0%
GCAGAACGTACCTGGAGTCC+TGG - chr5_2:23651112-23651131 None:intergenic 60.0%
TCGAGGTCGTCGGGGATTGG+GGG - chr5_2:23647899-23647918 None:intergenic 65.0%
CTCGAGGTCGTCGGGGATTG+GGG - chr5_2:23647900-23647919 None:intergenic 65.0%
CCGCCCCCTACCTTCTTCTC+AGG - chr5_2:23648808-23648827 None:intergenic 65.0%
CGGCAAGGACGACAGCAGTG+AGG - chr5_2:23651511-23651530 None:intergenic 65.0%
CGAGGTCGTCGGGGATTGGG+GGG - chr5_2:23647898-23647917 None:intergenic 70.0%
! TTTTCCGACGCGGTGGCCGG+CGG - chr5_2:23648775-23648794 None:intergenic 70.0%
! CGGCGGTGGCACCACCGCGT+CGG - chr5_2:23648758-23648777 None:intergenic 80.0%
!!! CGACGCGGTGGTGCCACCGC+CGG + chr5_2:23648756-23648775 Msa0764130:intron 80.0%
! GCCACCGCCGGCCACCGCGT+CGG + chr5_2:23648768-23648787 Msa0764130:intron 85.0%
! TCCGACGCGGTGGCCGGCGG+TGG - chr5_2:23648772-23648791 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 23647856 23652017 23647856 ID=Msa0764130;Name=Msa0764130
chr5_2 mRNA 23647856 23652017 23647856 ID=Msa0764130-mRNA-1;Parent=Msa0764130;Name=Msa0764130-mRNA-1;_AED=0.23;_eAED=0.23;_QI=19|0.66|0.5|0.75|0.66|0.75|4|0|132
chr5_2 exon 23647856 23647992 23647856 ID=Msa0764130-mRNA-1:exon:9743;Parent=Msa0764130-mRNA-1
chr5_2 exon 23648080 23648141 23648080 ID=Msa0764130-mRNA-1:exon:9744;Parent=Msa0764130-mRNA-1
chr5_2 exon 23648248 23648304 23648248 ID=Msa0764130-mRNA-1:exon:9745;Parent=Msa0764130-mRNA-1
chr5_2 exon 23651859 23652017 23651859 ID=Msa0764130-mRNA-1:exon:9746;Parent=Msa0764130-mRNA-1
chr5_2 five_prime_UTR 23647856 23647874 23647856 ID=Msa0764130-mRNA-1:five_prime_utr;Parent=Msa0764130-mRNA-1
chr5_2 CDS 23647875 23647992 23647875 ID=Msa0764130-mRNA-1:cds;Parent=Msa0764130-mRNA-1
chr5_2 CDS 23648080 23648141 23648080 ID=Msa0764130-mRNA-1:cds;Parent=Msa0764130-mRNA-1
chr5_2 CDS 23648248 23648304 23648248 ID=Msa0764130-mRNA-1:cds;Parent=Msa0764130-mRNA-1
chr5_2 CDS 23651859 23652017 23651859 ID=Msa0764130-mRNA-1:cds;Parent=Msa0764130-mRNA-1
Gene Sequence

>Msa0764130

ATGGGATTTCTTGGCTATGACCCCCCAATCCCCGACGACCTCGAGTTATCTCCCGCTCAAATTCGCTTCATCAGAATAACACATCCGATCGCTCTCGCCTTCTGCTTTGGTGTAGGATGTCATGTTACCTCCGTATGGTACAAAGAAGTCAAGTTCGACCATGTCGTTTACGATTTTAAGCGTGCGTTCATGGATATTCTTAATGCTGCACATAATGGCACTACCGATCCTTCTCGGACATTTTGTCTGGACTTCGTTGCTGCTTTCTTCTTACATTGTTTATCTACTGGAGGCATCATCAGCGCATCAGATTGTCGTTATGGCTCAGATGATGCTTCTGGAATGGTTATCAGTTCAGAATGTGCAGCAGTGCAATCGCGAAACACTGAGCAGAAA

Protein sequence

>Msa0764130

MGFLGYDPPIPDDLELSPAQIRFIRITHPIALAFCFGVGCHVTSVWYKEVKFDHVVYDFKRAFMDILNAAHNGTTDPSRTFCLDFVAAFFLHCLSTGGIISASDCRYGSDDASGMVISSECAAVQSRNTEQK