Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688850 | KAF5467254.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 36 | 165 | 4.84e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688850 | sp|P42798|R15A1_ARATH | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.02e-92 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688850 | A0A833XJQ8 | 99.231 | 130 | 1 | 0 | 1 | 130 | 36 | 165 | 2.31e-90 | 268 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0688850 | 0.830581 | 2.709986e-55 | -8.615850e-47 |
| Msa0002790 | Msa0688850 | 0.819142 | 1.356745e-52 | -8.615850e-47 |
| Msa0003780 | Msa0688850 | 0.835527 | 1.593123e-56 | -8.615850e-47 |
| Msa0022970 | Msa0688850 | 0.800707 | 1.270280e-48 | -8.615850e-47 |
| Msa0027260 | Msa0688850 | 0.824678 | 7.088492e-54 | -8.615850e-47 |
| Msa0032090 | Msa0688850 | 0.820416 | 6.940914e-53 | -8.615850e-47 |
| Msa0032580 | Msa0688850 | 0.807372 | 5.219232e-50 | -8.615850e-47 |
| Msa0040690 | Msa0688850 | 0.884041 | 2.688809e-71 | -8.615850e-47 |
| Msa0047160 | Msa0688850 | 0.812034 | 5.192905e-51 | -8.615850e-47 |
| Msa0048180 | Msa0688850 | 0.806207 | 9.201585e-50 | -8.615850e-47 |
| Msa0049370 | Msa0688850 | 0.801893 | 7.261440e-49 | -8.615850e-47 |
| Msa0074320 | Msa0688850 | 0.814137 | 1.795302e-51 | -8.615850e-47 |
| Msa0091880 | Msa0688850 | 0.806440 | 8.218967e-50 | -8.615850e-47 |
| Msa0094470 | Msa0688850 | 0.820702 | 5.964461e-53 | -8.615850e-47 |
| Msa0118710 | Msa0688850 | 0.832305 | 1.019508e-55 | -8.615850e-47 |
| Msa0608320 | Msa0688850 | 0.809705 | 1.657991e-50 | -8.615850e-47 |
| Msa0615440 | Msa0688850 | 0.845842 | 3.155341e-59 | -8.615850e-47 |
| Msa0621950 | Msa0688850 | 0.838246 | 3.222228e-57 | -8.615850e-47 |
| Msa0688850 | Msa0698490 | 0.847374 | 1.204474e-59 | -8.615850e-47 |
| Msa0688850 | Msa0698660 | 0.847797 | 9.213347e-60 | -8.615850e-47 |
| Msa0688850 | Msa0738100 | 0.825887 | 3.669145e-54 | -8.615850e-47 |
| Msa0688850 | Msa0780490 | 0.840355 | 9.142628e-58 | -8.615850e-47 |
| Msa0688850 | Msa0789930 | 0.801436 | 9.014449e-49 | -8.615850e-47 |
| Msa0688850 | Msa0817540 | 0.808543 | 2.941823e-50 | -8.615850e-47 |
| Msa0688850 | Msa0902760 | 0.809799 | 1.582705e-50 | -8.615850e-47 |
| Msa0688850 | Msa0953310 | 0.812891 | 3.374592e-51 | -8.615850e-47 |
| Msa0688850 | Msa1006840 | 0.840511 | 8.318889e-58 | -8.615850e-47 |
| Msa0688850 | Msa1012740 | 0.814045 | 1.881273e-51 | -8.615850e-47 |
| Msa0688850 | Msa1013400 | 0.805219 | 1.483665e-49 | -8.615850e-47 |
| Msa0688850 | Msa1019240 | 0.824633 | 7.262520e-54 | -8.615850e-47 |
| Msa0688850 | Msa1019260 | 0.827454 | 1.550657e-54 | -8.615850e-47 |
| Msa0688850 | Msa1043690 | 0.864592 | 1.088624e-64 | -8.615850e-47 |
| Msa0688850 | Msa1088490 | 0.802681 | 4.998468e-49 | -8.615850e-47 |
| Msa0688850 | Msa1093530 | 0.806698 | 7.251081e-50 | -8.615850e-47 |
| Msa0688850 | Msa1104140 | 0.858121 | 1.024090e-62 | -8.615850e-47 |
| Msa0688850 | Msa1104210 | 0.834706 | 2.566679e-56 | -8.615850e-47 |
| Msa0688850 | Msa1126510 | 0.811588 | 6.493552e-51 | -8.615850e-47 |
| Msa0688850 | Msa1135890 | 0.838039 | 3.644639e-57 | -8.615850e-47 |
| Msa0688850 | Msa1166860 | 0.823337 | 1.462266e-53 | -8.615850e-47 |
| Msa0688850 | Msa1166870 | 0.806923 | 6.496532e-50 | -8.615850e-47 |
| Msa0688850 | Msa1183450 | 0.819885 | 9.183112e-53 | -8.615850e-47 |
| Msa0688850 | Msa1207270 | 0.805703 | 1.174345e-49 | -8.615850e-47 |
| Msa0688850 | Msa1215820 | 0.826170 | 3.141627e-54 | -8.615850e-47 |
| Msa0688850 | Msa1265630 | 0.813451 | 2.542970e-51 | -8.615850e-47 |
| Msa0688850 | Msa1305050 | 0.824589 | 7.438229e-54 | -8.615850e-47 |
| Msa0688850 | Msa1363330 | 0.835342 | 1.774381e-56 | -8.615850e-47 |
| Msa0688850 | Msa1366180 | 0.816821 | 4.538147e-52 | -8.615850e-47 |
| Msa0688850 | Msa1374120 | 0.853704 | 2.004467e-61 | -8.615850e-47 |
| Msa0688850 | Msa1379760 | 0.827980 | 1.158866e-54 | -8.615850e-47 |
| Msa0688850 | Msa1382620 | 0.851626 | 7.853924e-61 | -8.615850e-47 |
| Msa0688850 | Msa1386600 | 0.835666 | 1.469579e-56 | -8.615850e-47 |
| Msa0688850 | Msa1394290 | 0.827842 | 1.251126e-54 | -8.615850e-47 |
| Msa0688850 | Msa1399530 | 0.810827 | 9.496213e-51 | -8.615850e-47 |
| Msa0688850 | Msa1432700 | 0.819873 | 9.241336e-53 | -8.615850e-47 |
| Msa0688850 | Msa1433310 | 0.822516 | 2.271578e-53 | -8.615850e-47 |
| Msa0688850 | Msa1448690 | 0.822658 | 2.105713e-53 | -8.615850e-47 |
| Msa0128860 | Msa0688850 | 0.825931 | 3.581251e-54 | -8.615850e-47 |
| Msa0133540 | Msa0688850 | 0.807888 | 4.056654e-50 | -8.615850e-47 |
| Msa0146340 | Msa0688850 | 0.819036 | 1.434063e-52 | -8.615850e-47 |
| Msa0163760 | Msa0688850 | 0.820747 | 5.823776e-53 | -8.615850e-47 |
| Msa0165660 | Msa0688850 | 0.822022 | 2.957960e-53 | -8.615850e-47 |
| Msa0167480 | Msa0688850 | 0.804318 | 2.288403e-49 | -8.615850e-47 |
| Msa0172970 | Msa0688850 | 0.803642 | 3.161692e-49 | -8.615850e-47 |
| Msa0174730 | Msa0688850 | 0.824012 | 1.016392e-53 | -8.615850e-47 |
| Msa0187690 | Msa0688850 | 0.814198 | 1.740415e-51 | -8.615850e-47 |
| Msa0187930 | Msa0688850 | 0.808818 | 2.568540e-50 | -8.615850e-47 |
| Msa0194540 | Msa0688850 | 0.801367 | 9.308688e-49 | -8.615850e-47 |
| Msa0443390 | Msa0688850 | 0.802893 | 4.520133e-49 | -8.615850e-47 |
| Msa0244780 | Msa0688850 | 0.820784 | 5.712798e-53 | -8.615850e-47 |
| Msa0264010 | Msa0688850 | 0.828339 | 9.496160e-55 | -8.615850e-47 |
| Msa0268130 | Msa0688850 | 0.807603 | 4.662149e-50 | -8.615850e-47 |
| Msa0289580 | Msa0688850 | 0.854240 | 1.404047e-61 | -8.615850e-47 |
| Msa0289610 | Msa0688850 | 0.859612 | 3.667403e-63 | -8.615850e-47 |
| Msa0298990 | Msa0688850 | 0.815591 | 8.545647e-52 | -8.615850e-47 |
| Msa0313100 | Msa0688850 | 0.804107 | 2.531141e-49 | -8.615850e-47 |
| Msa0321640 | Msa0688850 | 0.835200 | 1.927145e-56 | -8.615850e-47 |
| Msa0327300 | Msa0688850 | 0.850181 | 2.004722e-60 | -8.615850e-47 |
| Msa0327330 | Msa0688850 | 0.834867 | 2.337757e-56 | -8.615850e-47 |
| Msa0336010 | Msa0688850 | 0.804797 | 1.817919e-49 | -8.615850e-47 |
| Msa0483110 | Msa0688850 | 0.801658 | 8.116487e-49 | -8.615850e-47 |
| Msa0526540 | Msa0688850 | 0.832137 | 1.122398e-55 | -8.615850e-47 |
| Msa0571920 | Msa0688850 | 0.806080 | 9.786807e-50 | -8.615850e-47 |
| Msa0576940 | Msa0688850 | 0.840954 | 6.371176e-58 | -8.615850e-47 |
| Msa0588360 | Msa0688850 | 0.822453 | 2.349425e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688850 | MtrunA17_Chr4g0051921 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 4.54e-94 | 267 |
| Msa0688850 | MtrunA17_Chr1g0205971 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 4.54e-94 | 267 |
| Msa0688850 | MtrunA17_Chr4g0065831 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.23e-93 | 265 |
| Msa0688850 | MtrunA17_Chr8g0389371 | 52.000 | 125 | 60 | 0 | 6 | 130 | 5 | 129 | 7.69e-46 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688850 | AT5G59850.1 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.10e-93 | 265 |
| Msa0688850 | AT1G07770.2 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.10e-93 | 265 |
| Msa0688850 | AT1G07770.3 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.10e-93 | 265 |
| Msa0688850 | AT1G07770.1 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.10e-93 | 265 |
| Msa0688850 | AT3G46040.1 | 96.923 | 130 | 4 | 0 | 1 | 130 | 1 | 130 | 1.15e-91 | 261 |
| Msa0688850 | AT2G39590.1 | 91.538 | 130 | 11 | 0 | 1 | 130 | 1 | 130 | 4.79e-87 | 249 |
| Msa0688850 | AT4G29430.1 | 54.400 | 125 | 57 | 0 | 6 | 130 | 5 | 129 | 1.57e-47 | 149 |
| Msa0688850 | AT2G19720.1 | 53.600 | 125 | 58 | 0 | 6 | 130 | 5 | 129 | 1.77e-45 | 144 |
Find 44 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTGCTAAATTGAATTT+TGG | 0.078467 | 4_4:-55113493 | Msa0688850:three_prime_UTR |
| GGACTAACTAAAGAATTATT+TGG | 0.203202 | 4_4:+55113375 | None:intergenic |
| GTTGAGGCACTGGCGGAATT+AGG | 0.264861 | 4_4:+55115467 | None:intergenic |
| AAATTCTCAACATATGAAAT+TGG | 0.297912 | 4_4:+55113607 | None:intergenic |
| AGTGATTATCAAATTCCTTA+TGG | 0.311584 | 4_4:-55115196 | Msa0688850:CDS |
| CTAAGAAACTATTATGCTCT+TGG | 0.348622 | 4_4:-55113440 | Msa0688850:intron |
| TTTACATGGATATTGTAATC+TGG | 0.380843 | 4_4:-55113551 | Msa0688850:three_prime_UTR |
| TTGAGGCACTGGCGGAATTA+GGG | 0.392088 | 4_4:+55115468 | None:intergenic |
| TTGTGGTTGTAGGATACATT+GGG | 0.397768 | 4_4:-55115053 | Msa0688850:intron |
| GACTACCTCTGCTGGTATCA+TGG | 0.414748 | 4_4:-55113705 | Msa0688850:CDS |
| ACCACCAACATTCTTTCTCC+TGG | 0.414976 | 4_4:+55113670 | None:intergenic |
| CTGTCTCTGCGTTGAGGCAC+TGG | 0.420787 | 4_4:+55115457 | None:intergenic |
| GAAAGCGTCAAGTTATGATT+AGG | 0.452540 | 4_4:-55115230 | Msa0688850:CDS |
| TGGAGAAGAAGAACGGAGGC+CGG | 0.461327 | 4_4:+55115492 | None:intergenic |
| GGAGAAGAAGAACGGAGGCC+GGG | 0.474192 | 4_4:+55115493 | None:intergenic |
| AGCAGCTTACACAATTTCTC+TGG | 0.488633 | 4_4:-55115431 | Msa0688850:intron |
| ATGGATATTGTAATCTGGAT+AGG | 0.490423 | 4_4:-55113546 | Msa0688850:three_prime_UTR |
| AATGTTGGTGGTAAAGTGTT+GGG | 0.506719 | 4_4:-55113659 | Msa0688850:CDS |
| TTGAATATGTCGATGATCAC+AGG | 0.509301 | 4_4:-55115026 | Msa0688850:CDS |
| CTTGTGGTTGTAGGATACAT+TGG | 0.518199 | 4_4:-55115054 | Msa0688850:intron |
| AAAATTGTCGTCGAATTGAA+TGG | 0.519692 | 4_4:-55114997 | Msa0688850:CDS |
| GGCACTGGCGGAATTAGGGT+TGG | 0.523043 | 4_4:+55115472 | None:intergenic |
| AGATTGAAGGATGGACTGCT+AGG | 0.524175 | 4_4:-55114921 | Msa0688850:CDS |
| ATTGTCTTGACTACCTCTGC+TGG | 0.534592 | 4_4:-55113713 | Msa0688850:CDS |
| GAATGTTGGTGGTAAAGTGT+TGG | 0.537027 | 4_4:-55113660 | Msa0688850:CDS |
| TTAGGGTTGGAGAAGAAGAA+CGG | 0.545337 | 4_4:+55115485 | None:intergenic |
| TATGTCGATGATCACAGGTC+TGG | 0.547616 | 4_4:-55115021 | Msa0688850:CDS |
| TCATGGATCATGAAGAGGCC+AGG | 0.549802 | 4_4:-55113688 | Msa0688850:CDS |
| TTTAGCAGAAAAGATGGTGA+GGG | 0.569969 | 4_4:-55115304 | Msa0688850:intron |
| TAGGCTTCTTCCCTCAAGAC+AGG | 0.576488 | 4_4:-55114902 | Msa0688850:intron |
| GCCAGGAGAAAGAATGTTGG+TGG | 0.584787 | 4_4:-55113671 | Msa0688850:CDS |
| TCTCTGCGTTGAGGCACTGG+CGG | 0.590324 | 4_4:+55115460 | None:intergenic |
| GTTGGTGTCAAAGAGATTGA+AGG | 0.610557 | 4_4:-55114934 | Msa0688850:CDS |
| CTTATGGTCATGCAAAAGCA+TGG | 0.625786 | 4_4:-55115180 | Msa0688850:intron |
| TGTGGTTGTAGGATACATTG+GGG | 0.634517 | 4_4:-55115052 | Msa0688850:intron |
| ATGATCCATGATACCAGCAG+AGG | 0.644078 | 4_4:+55113700 | None:intergenic |
| TGGTATCATGGATCATGAAG+AGG | 0.653772 | 4_4:-55113693 | Msa0688850:CDS |
| GAGGCCAGGAGAAAGAATGT+TGG | 0.655684 | 4_4:-55113674 | Msa0688850:CDS |
| GCTACACTGTCTCTGCGTTG+AGG | 0.657183 | 4_4:+55115451 | None:intergenic |
| AATGGTAGATTGAACAAGTG+TGG | 0.659687 | 4_4:-55114979 | Msa0688850:CDS |
| GTGTCAAAGAGATTGAAGGA+TGG | 0.661917 | 4_4:-55114930 | Msa0688850:CDS |
| ATGTACAATGCTGAGAAACG+TGG | 0.686253 | 4_4:-55115252 | Msa0688850:CDS |
| TTGACACCAACATCAAAACG+AGG | 0.729538 | 4_4:+55114946 | None:intergenic |
| GGGTTGGAGAAGAAGAACGG+AGG | 0.745686 | 4_4:+55115488 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAATATTAAAAGAT+GGG | + | chr4_4:55114957-55114976 | None:intergenic | 10.0% |
| !! | TAAATGAAAATATTAAAAGA+TGG | + | chr4_4:55114958-55114977 | None:intergenic | 10.0% |
| !! | AAATGAAAATATTAAAAGAT+GGG | + | chr4_4:55114957-55114976 | None:intergenic | 10.0% |
| !! | TAAATGAAAATATTAAAAGA+TGG | + | chr4_4:55114958-55114977 | None:intergenic | 10.0% |
| !!! | TTTTTATTCTGTTTAACTAT+TGG | + | chr4_4:55113382-55113401 | None:intergenic | 15.0% |
| !! | CTATAAAACAAACTTAAATA+AGG | + | chr4_4:55114344-55114363 | None:intergenic | 15.0% |
| !! | TAAACATTACAATTGAATAA+TGG | + | chr4_4:55115009-55115028 | None:intergenic | 15.0% |
| !!! | TCAGTTTTTTTTTTTTTACA+TGG | - | chr4_4:55115330-55115349 | Msa0688850:intron | 15.0% |
| !!! | TTTTTATTCTGTTTAACTAT+TGG | + | chr4_4:55113382-55113401 | None:intergenic | 15.0% |
| !! | CTATAAAACAAACTTAAATA+AGG | + | chr4_4:55114344-55114363 | None:intergenic | 15.0% |
| !! | TAAACATTACAATTGAATAA+TGG | + | chr4_4:55115009-55115028 | None:intergenic | 15.0% |
| !!! | TCAGTTTTTTTTTTTTTACA+TGG | - | chr4_4:55115330-55115349 | Msa0688850:intron | 15.0% |
| !! | AAATCAAAGAAATTCAGAAA+GGG | + | chr4_4:55113507-55113526 | None:intergenic | 20.0% |
| !! | CAAATTTATAAGACAAAACT+CGG | + | chr4_4:55114031-55114050 | None:intergenic | 20.0% |
| !!! | TCAAACTACTAACATTTTTA+TGG | + | chr4_4:55114064-55114083 | None:intergenic | 20.0% |
| !!! | TGATAGTTTAATTTACATGA+TGG | - | chr4_4:55114081-55114100 | Msa0688850:intron | 20.0% |
| !! | TCAAATAAGTTAATCCAAAT+AGG | + | chr4_4:55114135-55114154 | None:intergenic | 20.0% |
| !!! | CTTTCTAATTTATTTGCTTT+TGG | - | chr4_4:55114488-55114507 | Msa0688850:intron | 20.0% |
| !! | ATTAGAAATGATTCATGATT+AGG | + | chr4_4:55114725-55114744 | None:intergenic | 20.0% |
| !! | AAAATATTAAAAGATGGGAT+AGG | + | chr4_4:55114952-55114971 | None:intergenic | 20.0% |
| !! | TGTAATGTTTATATACTTGT+CGG | - | chr4_4:55115018-55115037 | Msa0688850:CDS | 20.0% |
| !! | AAATTCTCAACATATGAAAT+TGG | + | chr4_4:55115291-55115310 | None:intergenic | 20.0% |
| !! | AAATCAAAGAAATTCAGAAA+GGG | + | chr4_4:55113507-55113526 | None:intergenic | 20.0% |
| !! | CAAATTTATAAGACAAAACT+CGG | + | chr4_4:55114031-55114050 | None:intergenic | 20.0% |
| !!! | TCAAACTACTAACATTTTTA+TGG | + | chr4_4:55114064-55114083 | None:intergenic | 20.0% |
| !!! | TGATAGTTTAATTTACATGA+TGG | - | chr4_4:55114081-55114100 | Msa0688850:intron | 20.0% |
| !! | TCAAATAAGTTAATCCAAAT+AGG | + | chr4_4:55114135-55114154 | None:intergenic | 20.0% |
| !!! | CTTTCTAATTTATTTGCTTT+TGG | - | chr4_4:55114488-55114507 | Msa0688850:intron | 20.0% |
| !! | ATTAGAAATGATTCATGATT+AGG | + | chr4_4:55114725-55114744 | None:intergenic | 20.0% |
| !! | AAAATATTAAAAGATGGGAT+AGG | + | chr4_4:55114952-55114971 | None:intergenic | 20.0% |
| !! | TGTAATGTTTATATACTTGT+CGG | - | chr4_4:55115018-55115037 | Msa0688850:CDS | 20.0% |
| !! | AAATTCTCAACATATGAAAT+TGG | + | chr4_4:55115291-55115310 | None:intergenic | 20.0% |
| ! | AGTTAAACAGAATAAAAACC+CGG | - | chr4_4:55113384-55113403 | Msa0688850:three_prime_UTR | 25.0% |
| ! | CAAATCAAAGAAATTCAGAA+AGG | + | chr4_4:55113508-55113527 | None:intergenic | 25.0% |
| ! | CTTTCTGAATTTCTTTGATT+TGG | - | chr4_4:55113506-55113525 | Msa0688850:three_prime_UTR | 25.0% |
| !!! | GAAATTTTTAGCAGAAAAGA+TGG | - | chr4_4:55113585-55113604 | Msa0688850:three_prime_UTR | 25.0% |
| !!! | GAATTTGATAATCACTTTTG+AGG | + | chr4_4:55113695-55113714 | None:intergenic | 25.0% |
| ! | AGTGATTATCAAATTCCTTA+TGG | - | chr4_4:55113699-55113718 | Msa0688850:CDS | 25.0% |
| !!! | ATTTGTTGTTTGATTCATGT+AGG | - | chr4_4:55113757-55113776 | Msa0688850:intron | 25.0% |
| ! | GATAATATTGTATACTCTTG+TGG | - | chr4_4:55113825-55113844 | Msa0688850:intron | 25.0% |
| ! | TTGTTTGTTTCCTTATTATG+TGG | - | chr4_4:55114446-55114465 | Msa0688850:intron | 25.0% |
| ! | TGTTCTATTTCCACATAATA+AGG | + | chr4_4:55114459-55114478 | None:intergenic | 25.0% |
| !!! | CTAATAGGCTTTTAAAACTT+GGG | - | chr4_4:55114536-55114555 | Msa0688850:intron | 25.0% |
| !! | TTAGTAGGCTTTTAAATCTT+GGG | - | chr4_4:55114563-55114582 | Msa0688850:intron | 25.0% |
| ! | CTGACTTATACTTCATATAT+TGG | - | chr4_4:55114631-55114650 | Msa0688850:intron | 25.0% |
| ! | TAAATTCAAACCGTTCTTTA+TGG | - | chr4_4:55114754-55114773 | Msa0688850:intron | 25.0% |
| ! | ATAGATGATAGTCAAATAGT+CGG | + | chr4_4:55114815-55114834 | None:intergenic | 25.0% |
| ! | CCATTAAAGCATAATAAGAA+GGG | + | chr4_4:55114846-55114865 | None:intergenic | 25.0% |
| ! | CCTTCTTATTATGCTTTAAT+GGG | - | chr4_4:55114844-55114863 | Msa0688850:intron | 25.0% |
| ! | CTTCTTATTATGCTTTAATG+GGG | - | chr4_4:55114845-55114864 | Msa0688850:intron | 25.0% |
| ! | AATTGAATAATGGTTGCAAA+AGG | + | chr4_4:55114999-55115018 | None:intergenic | 25.0% |
| ! | TTTACATGGATATTGTAATC+TGG | - | chr4_4:55115344-55115363 | Msa0688850:intron | 25.0% |
| !! | TTCTGTGCTAAATTGAATTT+TGG | - | chr4_4:55115402-55115421 | Msa0688850:intron | 25.0% |
| !! | TCTGTGCTAAATTGAATTTT+GGG | - | chr4_4:55115403-55115422 | Msa0688850:intron | 25.0% |
| !!! | AATTGAATTTTGGGTAATCT+TGG | - | chr4_4:55115412-55115431 | Msa0688850:intron | 25.0% |
| ! | AGTTAAACAGAATAAAAACC+CGG | - | chr4_4:55113384-55113403 | Msa0688850:three_prime_UTR | 25.0% |
| ! | CAAATCAAAGAAATTCAGAA+AGG | + | chr4_4:55113508-55113527 | None:intergenic | 25.0% |
| ! | CTTTCTGAATTTCTTTGATT+TGG | - | chr4_4:55113506-55113525 | Msa0688850:three_prime_UTR | 25.0% |
| !!! | GAAATTTTTAGCAGAAAAGA+TGG | - | chr4_4:55113585-55113604 | Msa0688850:three_prime_UTR | 25.0% |
| !!! | GAATTTGATAATCACTTTTG+AGG | + | chr4_4:55113695-55113714 | None:intergenic | 25.0% |
| ! | AGTGATTATCAAATTCCTTA+TGG | - | chr4_4:55113699-55113718 | Msa0688850:CDS | 25.0% |
| !!! | ATTTGTTGTTTGATTCATGT+AGG | - | chr4_4:55113757-55113776 | Msa0688850:intron | 25.0% |
| ! | GATAATATTGTATACTCTTG+TGG | - | chr4_4:55113825-55113844 | Msa0688850:intron | 25.0% |
| ! | TTGTTTGTTTCCTTATTATG+TGG | - | chr4_4:55114446-55114465 | Msa0688850:intron | 25.0% |
| ! | TGTTCTATTTCCACATAATA+AGG | + | chr4_4:55114459-55114478 | None:intergenic | 25.0% |
| !!! | CTAATAGGCTTTTAAAACTT+GGG | - | chr4_4:55114536-55114555 | Msa0688850:intron | 25.0% |
| !! | TTAGTAGGCTTTTAAATCTT+GGG | - | chr4_4:55114563-55114582 | Msa0688850:intron | 25.0% |
| ! | CTGACTTATACTTCATATAT+TGG | - | chr4_4:55114631-55114650 | Msa0688850:intron | 25.0% |
| ! | TAAATTCAAACCGTTCTTTA+TGG | - | chr4_4:55114754-55114773 | Msa0688850:intron | 25.0% |
| ! | ATAGATGATAGTCAAATAGT+CGG | + | chr4_4:55114815-55114834 | None:intergenic | 25.0% |
| ! | CCATTAAAGCATAATAAGAA+GGG | + | chr4_4:55114846-55114865 | None:intergenic | 25.0% |
| ! | CCTTCTTATTATGCTTTAAT+GGG | - | chr4_4:55114844-55114863 | Msa0688850:intron | 25.0% |
| ! | CTTCTTATTATGCTTTAATG+GGG | - | chr4_4:55114845-55114864 | Msa0688850:intron | 25.0% |
| ! | AATTGAATAATGGTTGCAAA+AGG | + | chr4_4:55114999-55115018 | None:intergenic | 25.0% |
| ! | TTTACATGGATATTGTAATC+TGG | - | chr4_4:55115344-55115363 | Msa0688850:intron | 25.0% |
| !! | TTCTGTGCTAAATTGAATTT+TGG | - | chr4_4:55115402-55115421 | Msa0688850:intron | 25.0% |
| !! | TCTGTGCTAAATTGAATTTT+GGG | - | chr4_4:55115403-55115422 | Msa0688850:intron | 25.0% |
| !!! | AATTGAATTTTGGGTAATCT+TGG | - | chr4_4:55115412-55115431 | Msa0688850:intron | 25.0% |
| !! | TTGATAATCACTTTTGAGGA+TGG | + | chr4_4:55113691-55113710 | None:intergenic | 30.0% |
| TGTTTGATTCATGTAGGATT+AGG | - | chr4_4:55113763-55113782 | Msa0688850:intron | 30.0% | |
| AAAATTGTCGTCGAATTGAA+TGG | - | chr4_4:55113898-55113917 | Msa0688850:intron | 30.0% | |
| ! | ATCCATTGACATAAGTTTTG+TGG | - | chr4_4:55114159-55114178 | Msa0688850:intron | 30.0% |
| !! | TCCATTGACATAAGTTTTGT+GGG | - | chr4_4:55114160-55114179 | Msa0688850:intron | 30.0% |
| AGAACTTATGAAATCAGCTA+TGG | - | chr4_4:55114192-55114211 | Msa0688850:intron | 30.0% | |
| AAAAAAGCTGACAAAAGCTT+GGG | + | chr4_4:55114225-55114244 | None:intergenic | 30.0% | |
| AAAAAAAGCTGACAAAAGCT+TGG | + | chr4_4:55114226-55114245 | None:intergenic | 30.0% | |
| !!! | ATTTATTTGCTTTTGGTTCC+TGG | - | chr4_4:55114495-55114514 | Msa0688850:intron | 30.0% |
| TCCTGGAATACCTTTATATT+AGG | - | chr4_4:55114512-55114531 | Msa0688850:intron | 30.0% | |
| ACCTTTATATTAGGCCTAAT+AGG | - | chr4_4:55114521-55114540 | Msa0688850:intron | 30.0% | |
| !!! | CCAAGTTTTAAAAGCCTATT+AGG | + | chr4_4:55114538-55114557 | None:intergenic | 30.0% |
| !!! | CCTAATAGGCTTTTAAAACT+TGG | - | chr4_4:55114535-55114554 | Msa0688850:intron | 30.0% |
| ! | GTTAGTAGGCTTTTAAATCT+TGG | - | chr4_4:55114562-55114581 | Msa0688850:intron | 30.0% |
| !! | TTTAAATCTTGGGTTGGAAT+TGG | - | chr4_4:55114573-55114592 | Msa0688850:intron | 30.0% |
| CCCTTCTTATTATGCTTTAA+TGG | - | chr4_4:55114843-55114862 | Msa0688850:intron | 30.0% | |
| CCCATTAAAGCATAATAAGA+AGG | + | chr4_4:55114847-55114866 | None:intergenic | 30.0% | |
| GTTTCATTTGATCTTTCTTG+TGG | - | chr4_4:55115123-55115142 | Msa0688850:intron | 30.0% | |
| !! | CATGATTTTAGCAACAGTAA+GGG | + | chr4_4:55115150-55115169 | None:intergenic | 30.0% |
| TTGCTAAAATCATGCAGTTT+GGG | - | chr4_4:55115156-55115175 | Msa0688850:intron | 30.0% | |
| !!! | AGTGTTGGGTTTTTTCTATT+AGG | - | chr4_4:55115250-55115269 | Msa0688850:CDS | 30.0% |
| !!! | GTGTTGGGTTTTTTCTATTA+GGG | - | chr4_4:55115251-55115270 | Msa0688850:CDS | 30.0% |
| !! | AGAATTTTGAGTGTTTGTGA+TGG | - | chr4_4:55115304-55115323 | Msa0688850:intron | 30.0% |
| ATGGATATTGTAATCTGGAT+AGG | - | chr4_4:55115349-55115368 | Msa0688850:intron | 30.0% | |
| CTAAGAAACTATTATGCTCT+TGG | - | chr4_4:55115455-55115474 | Msa0688850:five_prime_UTR | 30.0% | |
| !!! | CAATTTTGAAACACAAGCTA+GGG | + | chr4_4:55115482-55115501 | None:intergenic | 30.0% |
| !!! | ACAATTTTGAAACACAAGCT+AGG | + | chr4_4:55115483-55115502 | None:intergenic | 30.0% |
| !! | TTGATAATCACTTTTGAGGA+TGG | + | chr4_4:55113691-55113710 | None:intergenic | 30.0% |
| TGTTTGATTCATGTAGGATT+AGG | - | chr4_4:55113763-55113782 | Msa0688850:intron | 30.0% | |
| AAAATTGTCGTCGAATTGAA+TGG | - | chr4_4:55113898-55113917 | Msa0688850:intron | 30.0% | |
| ! | ATCCATTGACATAAGTTTTG+TGG | - | chr4_4:55114159-55114178 | Msa0688850:intron | 30.0% |
| !! | TCCATTGACATAAGTTTTGT+GGG | - | chr4_4:55114160-55114179 | Msa0688850:intron | 30.0% |
| AGAACTTATGAAATCAGCTA+TGG | - | chr4_4:55114192-55114211 | Msa0688850:intron | 30.0% | |
| AAAAAAGCTGACAAAAGCTT+GGG | + | chr4_4:55114225-55114244 | None:intergenic | 30.0% | |
| AAAAAAAGCTGACAAAAGCT+TGG | + | chr4_4:55114226-55114245 | None:intergenic | 30.0% | |
| !!! | ATTTATTTGCTTTTGGTTCC+TGG | - | chr4_4:55114495-55114514 | Msa0688850:intron | 30.0% |
| TCCTGGAATACCTTTATATT+AGG | - | chr4_4:55114512-55114531 | Msa0688850:intron | 30.0% | |
| ACCTTTATATTAGGCCTAAT+AGG | - | chr4_4:55114521-55114540 | Msa0688850:intron | 30.0% | |
| !!! | CCAAGTTTTAAAAGCCTATT+AGG | + | chr4_4:55114538-55114557 | None:intergenic | 30.0% |
| !!! | CCTAATAGGCTTTTAAAACT+TGG | - | chr4_4:55114535-55114554 | Msa0688850:intron | 30.0% |
| ! | GTTAGTAGGCTTTTAAATCT+TGG | - | chr4_4:55114562-55114581 | Msa0688850:intron | 30.0% |
| !! | TTTAAATCTTGGGTTGGAAT+TGG | - | chr4_4:55114573-55114592 | Msa0688850:intron | 30.0% |
| CCCTTCTTATTATGCTTTAA+TGG | - | chr4_4:55114843-55114862 | Msa0688850:intron | 30.0% | |
| CCCATTAAAGCATAATAAGA+AGG | + | chr4_4:55114847-55114866 | None:intergenic | 30.0% | |
| GTTTCATTTGATCTTTCTTG+TGG | - | chr4_4:55115123-55115142 | Msa0688850:intron | 30.0% | |
| !! | CATGATTTTAGCAACAGTAA+GGG | + | chr4_4:55115150-55115169 | None:intergenic | 30.0% |
| TTGCTAAAATCATGCAGTTT+GGG | - | chr4_4:55115156-55115175 | Msa0688850:intron | 30.0% | |
| !!! | AGTGTTGGGTTTTTTCTATT+AGG | - | chr4_4:55115250-55115269 | Msa0688850:CDS | 30.0% |
| !!! | GTGTTGGGTTTTTTCTATTA+GGG | - | chr4_4:55115251-55115270 | Msa0688850:CDS | 30.0% |
| !! | AGAATTTTGAGTGTTTGTGA+TGG | - | chr4_4:55115304-55115323 | Msa0688850:intron | 30.0% |
| ATGGATATTGTAATCTGGAT+AGG | - | chr4_4:55115349-55115368 | Msa0688850:intron | 30.0% | |
| CTAAGAAACTATTATGCTCT+TGG | - | chr4_4:55115455-55115474 | Msa0688850:five_prime_UTR | 30.0% | |
| !!! | CAATTTTGAAACACAAGCTA+GGG | + | chr4_4:55115482-55115501 | None:intergenic | 30.0% |
| !!! | ACAATTTTGAAACACAAGCT+AGG | + | chr4_4:55115483-55115502 | None:intergenic | 30.0% |
| ! | TTTTAGCAGAAAAGATGGTG+AGG | - | chr4_4:55113590-55113609 | Msa0688850:three_prime_UTR | 35.0% |
| TTTAGCAGAAAAGATGGTGA+GGG | - | chr4_4:55113591-55113610 | Msa0688850:three_prime_UTR | 35.0% | |
| !! | GAAAGCGTCAAGTTATGATT+AGG | - | chr4_4:55113665-55113684 | Msa0688850:CDS | 35.0% |
| TTGTATACTCTTGTGGTTGT+AGG | - | chr4_4:55113832-55113851 | Msa0688850:intron | 35.0% | |
| TTGTGGTTGTAGGATACATT+GGG | - | chr4_4:55113842-55113861 | Msa0688850:intron | 35.0% | |
| TTGAATATGTCGATGATCAC+AGG | - | chr4_4:55113869-55113888 | Msa0688850:intron | 35.0% | |
| AATGGTAGATTGAACAAGTG+TGG | - | chr4_4:55113916-55113935 | Msa0688850:intron | 35.0% | |
| !! | ATTAGTCCTCGTTTTGATGT+TGG | - | chr4_4:55113943-55113962 | Msa0688850:intron | 35.0% |
| TCCCACAAAACTTATGTCAA+TGG | + | chr4_4:55114164-55114183 | None:intergenic | 35.0% | |
| !! | ATAAGTTTTGTGGGACTGTT+TGG | - | chr4_4:55114169-55114188 | Msa0688850:intron | 35.0% |
| TATAGTTCCTAACTATCGAG+TGG | - | chr4_4:55114359-55114378 | Msa0688850:intron | 35.0% | |
| !! | GCCTAATATAAAGGTATTCC+AGG | + | chr4_4:55114516-55114535 | None:intergenic | 35.0% |
| GCCTATTAGGCCTAATATAA+AGG | + | chr4_4:55114525-55114544 | None:intergenic | 35.0% | |
| !!! | TAGGCTTTTAAAACTTGGGT+TGG | - | chr4_4:55114540-55114559 | Msa0688850:intron | 35.0% |
| !! | TAAAACTTGGGTTGGTTAGT+AGG | - | chr4_4:55114548-55114567 | Msa0688850:intron | 35.0% |
| ! | TAGGCTTTTAAATCTTGGGT+TGG | - | chr4_4:55114567-55114586 | Msa0688850:intron | 35.0% |
| CTTAAGTGAGTGAAACATCT+GGG | + | chr4_4:55114679-55114698 | None:intergenic | 35.0% | |
| CAGATGTTTCACTCACTTAA+GGG | - | chr4_4:55114678-55114697 | Msa0688850:intron | 35.0% | |
| TTCAAACCGTTCTTTATGGT+TGG | - | chr4_4:55114758-55114777 | Msa0688850:intron | 35.0% | |
| TCAAACCGTTCTTTATGGTT+GGG | - | chr4_4:55114759-55114778 | Msa0688850:intron | 35.0% | |
| ATACACCCAACCATAAAGAA+CGG | + | chr4_4:55114767-55114786 | None:intergenic | 35.0% | |
| CTTATTATGCTTTAATGGGG+TGG | - | chr4_4:55114848-55114867 | Msa0688850:intron | 35.0% | |
| ACAAGCAACATAACATTCGA+TGG | + | chr4_4:55115101-55115120 | None:intergenic | 35.0% | |
| !! | GCATGATTTTAGCAACAGTA+AGG | + | chr4_4:55115151-55115170 | None:intergenic | 35.0% |
| GTTGCTAAAATCATGCAGTT+TGG | - | chr4_4:55115155-55115174 | Msa0688850:intron | 35.0% | |
| !! | AATGTTGGTGGTAAAGTGTT+GGG | - | chr4_4:55115236-55115255 | Msa0688850:CDS | 35.0% |
| ! | TTTTAGCAGAAAAGATGGTG+AGG | - | chr4_4:55113590-55113609 | Msa0688850:three_prime_UTR | 35.0% |
| TTTAGCAGAAAAGATGGTGA+GGG | - | chr4_4:55113591-55113610 | Msa0688850:three_prime_UTR | 35.0% | |
| !! | GAAAGCGTCAAGTTATGATT+AGG | - | chr4_4:55113665-55113684 | Msa0688850:CDS | 35.0% |
| TTGTATACTCTTGTGGTTGT+AGG | - | chr4_4:55113832-55113851 | Msa0688850:intron | 35.0% | |
| TTGTGGTTGTAGGATACATT+GGG | - | chr4_4:55113842-55113861 | Msa0688850:intron | 35.0% | |
| TTGAATATGTCGATGATCAC+AGG | - | chr4_4:55113869-55113888 | Msa0688850:intron | 35.0% | |
| AATGGTAGATTGAACAAGTG+TGG | - | chr4_4:55113916-55113935 | Msa0688850:intron | 35.0% | |
| !! | ATTAGTCCTCGTTTTGATGT+TGG | - | chr4_4:55113943-55113962 | Msa0688850:intron | 35.0% |
| TCCCACAAAACTTATGTCAA+TGG | + | chr4_4:55114164-55114183 | None:intergenic | 35.0% | |
| !! | ATAAGTTTTGTGGGACTGTT+TGG | - | chr4_4:55114169-55114188 | Msa0688850:intron | 35.0% |
| TATAGTTCCTAACTATCGAG+TGG | - | chr4_4:55114359-55114378 | Msa0688850:intron | 35.0% | |
| !! | GCCTAATATAAAGGTATTCC+AGG | + | chr4_4:55114516-55114535 | None:intergenic | 35.0% |
| GCCTATTAGGCCTAATATAA+AGG | + | chr4_4:55114525-55114544 | None:intergenic | 35.0% | |
| !!! | TAGGCTTTTAAAACTTGGGT+TGG | - | chr4_4:55114540-55114559 | Msa0688850:intron | 35.0% |
| !! | TAAAACTTGGGTTGGTTAGT+AGG | - | chr4_4:55114548-55114567 | Msa0688850:intron | 35.0% |
| ! | TAGGCTTTTAAATCTTGGGT+TGG | - | chr4_4:55114567-55114586 | Msa0688850:intron | 35.0% |
| CTTAAGTGAGTGAAACATCT+GGG | + | chr4_4:55114679-55114698 | None:intergenic | 35.0% | |
| CAGATGTTTCACTCACTTAA+GGG | - | chr4_4:55114678-55114697 | Msa0688850:intron | 35.0% | |
| TTCAAACCGTTCTTTATGGT+TGG | - | chr4_4:55114758-55114777 | Msa0688850:intron | 35.0% | |
| TCAAACCGTTCTTTATGGTT+GGG | - | chr4_4:55114759-55114778 | Msa0688850:intron | 35.0% | |
| ATACACCCAACCATAAAGAA+CGG | + | chr4_4:55114767-55114786 | None:intergenic | 35.0% | |
| CTTATTATGCTTTAATGGGG+TGG | - | chr4_4:55114848-55114867 | Msa0688850:intron | 35.0% | |
| ACAAGCAACATAACATTCGA+TGG | + | chr4_4:55115101-55115120 | None:intergenic | 35.0% | |
| !! | GCATGATTTTAGCAACAGTA+AGG | + | chr4_4:55115151-55115170 | None:intergenic | 35.0% |
| GTTGCTAAAATCATGCAGTT+TGG | - | chr4_4:55115155-55115174 | Msa0688850:intron | 35.0% | |
| !! | AATGTTGGTGGTAAAGTGTT+GGG | - | chr4_4:55115236-55115255 | Msa0688850:CDS | 35.0% |
| TTAGGGTTGGAGAAGAAGAA+CGG | + | chr4_4:55113413-55113432 | None:intergenic | 40.0% | |
| AGCAGCTTACACAATTTCTC+TGG | - | chr4_4:55113464-55113483 | Msa0688850:intron | 40.0% | |
| ATGTACAATGCTGAGAAACG+TGG | - | chr4_4:55113643-55113662 | Msa0688850:exon | 40.0% | |
| ! | CATGCTTTTGCATGACCATA+AGG | + | chr4_4:55113717-55113736 | None:intergenic | 40.0% |
| CTTATGGTCATGCAAAAGCA+TGG | - | chr4_4:55113715-55113734 | Msa0688850:CDS | 40.0% | |
| ! | TCATGCAAAAGCATGGTATG+TGG | - | chr4_4:55113722-55113741 | Msa0688850:CDS | 40.0% |
| !! | GTAGGATTAGGCTTTGTTAC+TGG | - | chr4_4:55113775-55113794 | Msa0688850:intron | 40.0% |
| CTTGTGGTTGTAGGATACAT+TGG | - | chr4_4:55113841-55113860 | Msa0688850:intron | 40.0% | |
| TGTGGTTGTAGGATACATTG+GGG | - | chr4_4:55113843-55113862 | Msa0688850:intron | 40.0% | |
| TTGACACCAACATCAAAACG+AGG | + | chr4_4:55113952-55113971 | None:intergenic | 40.0% | |
| !! | GTTGGTGTCAAAGAGATTGA+AGG | - | chr4_4:55113961-55113980 | Msa0688850:intron | 40.0% |
| GTGTCAAAGAGATTGAAGGA+TGG | - | chr4_4:55113965-55113984 | Msa0688850:intron | 40.0% | |
| !! | TTTTAGCTGACCTGTCTTGA+GGG | + | chr4_4:55114006-55114025 | None:intergenic | 40.0% |
| !!! | ATTTTAGCTGACCTGTCTTG+AGG | + | chr4_4:55114007-55114026 | None:intergenic | 40.0% |
| ATGATATGTGCTTCTGCTAC+AGG | - | chr4_4:55114318-55114337 | Msa0688850:intron | 40.0% | |
| AGAATGACCACTCGATAGTT+AGG | + | chr4_4:55114369-55114388 | None:intergenic | 40.0% | |
| CCTTAAGTGAGTGAAACATC+TGG | + | chr4_4:55114680-55114699 | None:intergenic | 40.0% | |
| CCAGATGTTTCACTCACTTA+AGG | - | chr4_4:55114677-55114696 | Msa0688850:intron | 40.0% | |
| CACTCACTTAAGGGACTATT+TGG | - | chr4_4:55114687-55114706 | Msa0688850:intron | 40.0% | |
| ATAGTCGGTATGCATAGAGT+GGG | + | chr4_4:55114800-55114819 | None:intergenic | 40.0% | |
| AATAGTCGGTATGCATAGAG+TGG | + | chr4_4:55114801-55114820 | None:intergenic | 40.0% | |
| GGTGGACGTAGAATATTCAT+TGG | - | chr4_4:55114866-55114885 | Msa0688850:intron | 40.0% | |
| CTGAAGTTGCTATCATCATC+TGG | - | chr4_4:55115071-55115090 | Msa0688850:intron | 40.0% | |
| TGGTATCATGGATCATGAAG+AGG | - | chr4_4:55115202-55115221 | Msa0688850:CDS | 40.0% | |
| !! | GAATGTTGGTGGTAAAGTGT+TGG | - | chr4_4:55115235-55115254 | Msa0688850:CDS | 40.0% |
| TTAGGGTTGGAGAAGAAGAA+CGG | + | chr4_4:55113413-55113432 | None:intergenic | 40.0% | |
| AGCAGCTTACACAATTTCTC+TGG | - | chr4_4:55113464-55113483 | Msa0688850:intron | 40.0% | |
| ATGTACAATGCTGAGAAACG+TGG | - | chr4_4:55113643-55113662 | Msa0688850:exon | 40.0% | |
| ! | CATGCTTTTGCATGACCATA+AGG | + | chr4_4:55113717-55113736 | None:intergenic | 40.0% |
| CTTATGGTCATGCAAAAGCA+TGG | - | chr4_4:55113715-55113734 | Msa0688850:CDS | 40.0% | |
| ! | TCATGCAAAAGCATGGTATG+TGG | - | chr4_4:55113722-55113741 | Msa0688850:CDS | 40.0% |
| !! | GTAGGATTAGGCTTTGTTAC+TGG | - | chr4_4:55113775-55113794 | Msa0688850:intron | 40.0% |
| CTTGTGGTTGTAGGATACAT+TGG | - | chr4_4:55113841-55113860 | Msa0688850:intron | 40.0% | |
| TGTGGTTGTAGGATACATTG+GGG | - | chr4_4:55113843-55113862 | Msa0688850:intron | 40.0% | |
| TTGACACCAACATCAAAACG+AGG | + | chr4_4:55113952-55113971 | None:intergenic | 40.0% | |
| !! | GTTGGTGTCAAAGAGATTGA+AGG | - | chr4_4:55113961-55113980 | Msa0688850:intron | 40.0% |
| GTGTCAAAGAGATTGAAGGA+TGG | - | chr4_4:55113965-55113984 | Msa0688850:intron | 40.0% | |
| !! | TTTTAGCTGACCTGTCTTGA+GGG | + | chr4_4:55114006-55114025 | None:intergenic | 40.0% |
| !!! | ATTTTAGCTGACCTGTCTTG+AGG | + | chr4_4:55114007-55114026 | None:intergenic | 40.0% |
| ATGATATGTGCTTCTGCTAC+AGG | - | chr4_4:55114318-55114337 | Msa0688850:intron | 40.0% | |
| AGAATGACCACTCGATAGTT+AGG | + | chr4_4:55114369-55114388 | None:intergenic | 40.0% | |
| CCTTAAGTGAGTGAAACATC+TGG | + | chr4_4:55114680-55114699 | None:intergenic | 40.0% | |
| CCAGATGTTTCACTCACTTA+AGG | - | chr4_4:55114677-55114696 | Msa0688850:intron | 40.0% | |
| CACTCACTTAAGGGACTATT+TGG | - | chr4_4:55114687-55114706 | Msa0688850:intron | 40.0% | |
| ATAGTCGGTATGCATAGAGT+GGG | + | chr4_4:55114800-55114819 | None:intergenic | 40.0% | |
| AATAGTCGGTATGCATAGAG+TGG | + | chr4_4:55114801-55114820 | None:intergenic | 40.0% | |
| GGTGGACGTAGAATATTCAT+TGG | - | chr4_4:55114866-55114885 | Msa0688850:intron | 40.0% | |
| CTGAAGTTGCTATCATCATC+TGG | - | chr4_4:55115071-55115090 | Msa0688850:intron | 40.0% | |
| TGGTATCATGGATCATGAAG+AGG | - | chr4_4:55115202-55115221 | Msa0688850:CDS | 40.0% | |
| !! | GAATGTTGGTGGTAAAGTGT+TGG | - | chr4_4:55115235-55115254 | Msa0688850:CDS | 40.0% |
| ! | GCAAAAGCATGGTATGTGGT+TGG | - | chr4_4:55113726-55113745 | Msa0688850:intron | 45.0% |
| TATGTCGATGATCACAGGTC+TGG | - | chr4_4:55113874-55113893 | Msa0688850:intron | 45.0% | |
| !! | AGATTGAAGGATGGACTGCT+AGG | - | chr4_4:55113974-55113993 | Msa0688850:intron | 45.0% |
| TAGTGCACAATATGCGTCTC+TGG | - | chr4_4:55114108-55114127 | Msa0688850:intron | 45.0% | |
| AGTGCACAATATGCGTCTCT+GGG | - | chr4_4:55114109-55114128 | Msa0688850:intron | 45.0% | |
| TCAAGACTCCAACGTCAATG+TGG | + | chr4_4:55114400-55114419 | None:intergenic | 45.0% | |
| !! | ATCTTGGGTTGGAATTGGAG+AGG | - | chr4_4:55114578-55114597 | Msa0688850:intron | 45.0% |
| !! | TCTTGGGTTGGAATTGGAGA+GGG | - | chr4_4:55114579-55114598 | Msa0688850:intron | 45.0% |
| AGGGGTTAACCAGAACAATC+CGG | - | chr4_4:55114598-55114617 | Msa0688850:intron | 45.0% | |
| !! | ATAAGTCAGAGAAGCACTGC+CGG | + | chr4_4:55114620-55114639 | None:intergenic | 45.0% |
| ATTGTCTTGACTACCTCTGC+TGG | - | chr4_4:55115182-55115201 | Msa0688850:CDS | 45.0% | |
| ATGATCCATGATACCAGCAG+AGG | + | chr4_4:55115198-55115217 | None:intergenic | 45.0% | |
| ACCACCAACATTCTTTCTCC+TGG | + | chr4_4:55115228-55115247 | None:intergenic | 45.0% | |
| ! | GCAAAAGCATGGTATGTGGT+TGG | - | chr4_4:55113726-55113745 | Msa0688850:intron | 45.0% |
| TATGTCGATGATCACAGGTC+TGG | - | chr4_4:55113874-55113893 | Msa0688850:intron | 45.0% | |
| !! | AGATTGAAGGATGGACTGCT+AGG | - | chr4_4:55113974-55113993 | Msa0688850:intron | 45.0% |
| TAGTGCACAATATGCGTCTC+TGG | - | chr4_4:55114108-55114127 | Msa0688850:intron | 45.0% | |
| AGTGCACAATATGCGTCTCT+GGG | - | chr4_4:55114109-55114128 | Msa0688850:intron | 45.0% | |
| TCAAGACTCCAACGTCAATG+TGG | + | chr4_4:55114400-55114419 | None:intergenic | 45.0% | |
| !! | ATCTTGGGTTGGAATTGGAG+AGG | - | chr4_4:55114578-55114597 | Msa0688850:intron | 45.0% |
| !! | TCTTGGGTTGGAATTGGAGA+GGG | - | chr4_4:55114579-55114598 | Msa0688850:intron | 45.0% |
| AGGGGTTAACCAGAACAATC+CGG | - | chr4_4:55114598-55114617 | Msa0688850:intron | 45.0% | |
| !! | ATAAGTCAGAGAAGCACTGC+CGG | + | chr4_4:55114620-55114639 | None:intergenic | 45.0% |
| ATTGTCTTGACTACCTCTGC+TGG | - | chr4_4:55115182-55115201 | Msa0688850:CDS | 45.0% | |
| ATGATCCATGATACCAGCAG+AGG | + | chr4_4:55115198-55115217 | None:intergenic | 45.0% | |
| ACCACCAACATTCTTTCTCC+TGG | + | chr4_4:55115228-55115247 | None:intergenic | 45.0% | |
| !! | TTGAGGCACTGGCGGAATTA+GGG | + | chr4_4:55113430-55113449 | None:intergenic | 50.0% |
| TAGGCTTCTTCCCTCAAGAC+AGG | - | chr4_4:55113993-55114012 | Msa0688850:intron | 50.0% | |
| TATGCGTCTCTGGGCCTATT+TGG | - | chr4_4:55114118-55114137 | Msa0688850:intron | 50.0% | |
| TTTGCGCACCACATTGACGT+TGG | - | chr4_4:55114389-55114408 | Msa0688850:intron | 50.0% | |
| !! | CTTGGGTTGGAATTGGAGAG+GGG | - | chr4_4:55114580-55114599 | Msa0688850:intron | 50.0% |
| GACTACCTCTGCTGGTATCA+TGG | - | chr4_4:55115190-55115209 | Msa0688850:CDS | 50.0% | |
| TCATGGATCATGAAGAGGCC+AGG | - | chr4_4:55115207-55115226 | Msa0688850:CDS | 50.0% | |
| GAGGCCAGGAGAAAGAATGT+TGG | - | chr4_4:55115221-55115240 | Msa0688850:CDS | 50.0% | |
| GCCAGGAGAAAGAATGTTGG+TGG | - | chr4_4:55115224-55115243 | Msa0688850:CDS | 50.0% | |
| !! | TTGAGGCACTGGCGGAATTA+GGG | + | chr4_4:55113430-55113449 | None:intergenic | 50.0% |
| TAGGCTTCTTCCCTCAAGAC+AGG | - | chr4_4:55113993-55114012 | Msa0688850:intron | 50.0% | |
| TATGCGTCTCTGGGCCTATT+TGG | - | chr4_4:55114118-55114137 | Msa0688850:intron | 50.0% | |
| TTTGCGCACCACATTGACGT+TGG | - | chr4_4:55114389-55114408 | Msa0688850:intron | 50.0% | |
| !! | CTTGGGTTGGAATTGGAGAG+GGG | - | chr4_4:55114580-55114599 | Msa0688850:intron | 50.0% |
| GACTACCTCTGCTGGTATCA+TGG | - | chr4_4:55115190-55115209 | Msa0688850:CDS | 50.0% | |
| TCATGGATCATGAAGAGGCC+AGG | - | chr4_4:55115207-55115226 | Msa0688850:CDS | 50.0% | |
| GAGGCCAGGAGAAAGAATGT+TGG | - | chr4_4:55115221-55115240 | Msa0688850:CDS | 50.0% | |
| GCCAGGAGAAAGAATGTTGG+TGG | - | chr4_4:55115224-55115243 | Msa0688850:CDS | 50.0% | |
| TGGAGAAGAAGAACGGAGGC+CGG | + | chr4_4:55113406-55113425 | None:intergenic | 55.0% | |
| GGGTTGGAGAAGAAGAACGG+AGG | + | chr4_4:55113410-55113429 | None:intergenic | 55.0% | |
| !! | GTTGAGGCACTGGCGGAATT+AGG | + | chr4_4:55113431-55113450 | None:intergenic | 55.0% |
| GCTACACTGTCTCTGCGTTG+AGG | + | chr4_4:55113447-55113466 | None:intergenic | 55.0% | |
| !! | GAAGCACTGCCGGATTGTTC+TGG | + | chr4_4:55114610-55114629 | None:intergenic | 55.0% |
| TGGAGAAGAAGAACGGAGGC+CGG | + | chr4_4:55113406-55113425 | None:intergenic | 55.0% | |
| GGGTTGGAGAAGAAGAACGG+AGG | + | chr4_4:55113410-55113429 | None:intergenic | 55.0% | |
| !! | GTTGAGGCACTGGCGGAATT+AGG | + | chr4_4:55113431-55113450 | None:intergenic | 55.0% |
| GCTACACTGTCTCTGCGTTG+AGG | + | chr4_4:55113447-55113466 | None:intergenic | 55.0% | |
| !! | GAAGCACTGCCGGATTGTTC+TGG | + | chr4_4:55114610-55114629 | None:intergenic | 55.0% |
| GGAGAAGAAGAACGGAGGCC+GGG | + | chr4_4:55113405-55113424 | None:intergenic | 60.0% | |
| !! | GGCACTGGCGGAATTAGGGT+TGG | + | chr4_4:55113426-55113445 | None:intergenic | 60.0% |
| !! | TCTCTGCGTTGAGGCACTGG+CGG | + | chr4_4:55113438-55113457 | None:intergenic | 60.0% |
| CTGTCTCTGCGTTGAGGCAC+TGG | + | chr4_4:55113441-55113460 | None:intergenic | 60.0% | |
| GGAGAAGAAGAACGGAGGCC+GGG | + | chr4_4:55113405-55113424 | None:intergenic | 60.0% | |
| !! | GGCACTGGCGGAATTAGGGT+TGG | + | chr4_4:55113426-55113445 | None:intergenic | 60.0% |
| !! | TCTCTGCGTTGAGGCACTGG+CGG | + | chr4_4:55113438-55113457 | None:intergenic | 60.0% |
| CTGTCTCTGCGTTGAGGCAC+TGG | + | chr4_4:55113441-55113460 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 55113379 | 55115538 | 55113379 | ID=Msa0688850;Name=Msa0688850 |
| chr4_4 | mRNA | 55113379 | 55115538 | 55113379 | ID=Msa0688850-mRNA-1;Parent=Msa0688850;Name=Msa0688850-mRNA-1;_AED=0.16;_eAED=0.16;_QI=115|1|1|1|0.5|0.2|5|233|130 |
| chr4_4 | exon | 55113379 | 55113458 | 55113379 | ID=Msa0688850-mRNA-1:exon:14570;Parent=Msa0688850-mRNA-1 |
| chr4_4 | exon | 55113493 | 55113744 | 55113493 | ID=Msa0688850-mRNA-1:exon:14569;Parent=Msa0688850-mRNA-1 |
| chr4_4 | exon | 55114903 | 55115063 | 55114903 | ID=Msa0688850-mRNA-1:exon:14568;Parent=Msa0688850-mRNA-1 |
| chr4_4 | exon | 55115181 | 55115321 | 55115181 | ID=Msa0688850-mRNA-1:exon:14567;Parent=Msa0688850-mRNA-1 |
| chr4_4 | exon | 55115432 | 55115538 | 55115432 | ID=Msa0688850-mRNA-1:exon:14566;Parent=Msa0688850-mRNA-1 |
| chr4_4 | five_prime_UTR | 55115432 | 55115538 | 55115432 | ID=Msa0688850-mRNA-1:five_prime_utr;Parent=Msa0688850-mRNA-1 |
| chr4_4 | five_prime_UTR | 55115314 | 55115321 | 55115314 | ID=Msa0688850-mRNA-1:five_prime_utr;Parent=Msa0688850-mRNA-1 |
| chr4_4 | CDS | 55115181 | 55115313 | 55115181 | ID=Msa0688850-mRNA-1:cds;Parent=Msa0688850-mRNA-1 |
| chr4_4 | CDS | 55114903 | 55115063 | 55114903 | ID=Msa0688850-mRNA-1:cds;Parent=Msa0688850-mRNA-1 |
| chr4_4 | CDS | 55113646 | 55113744 | 55113646 | ID=Msa0688850-mRNA-1:cds;Parent=Msa0688850-mRNA-1 |
| chr4_4 | three_prime_UTR | 55113493 | 55113645 | 55113493 | ID=Msa0688850-mRNA-1:three_prime_utr;Parent=Msa0688850-mRNA-1 |
| chr4_4 | three_prime_UTR | 55113379 | 55113458 | 55113379 | ID=Msa0688850-mRNA-1:three_prime_utr;Parent=Msa0688850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
