AlfalfaGEDB | Msa0298200

M. sativa cultivar zhongmu-4 / Msa0298200

KEGG: K02975
GO: -
PFAM: PF03297.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298200	XP_003596834.1	100.000	107	0	0	1	107	1	107	7.03e-71	216

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298200	sp\|Q9SIK2\|RS252_ARATH	91.667	108	8	1	1	107	1	108	2.38e-52	162

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298200	B7FGM7	100.000	107	0	0	1	107	1	107	3.36e-71	216

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0298200	0.865514	5.588761e-65	-8.615850e-47
Msa0002790	Msa0298200	0.872790	2.426128e-67	-8.615850e-47
Msa0003780	Msa0298200	0.814529	1.471148e-51	-8.615850e-47
Msa0022970	Msa0298200	0.824888	6.324454e-54	-8.615850e-47
Msa0027260	Msa0298200	0.833599	4.860940e-56	-8.615850e-47
Msa0031510	Msa0298200	0.817756	2.795299e-52	-8.615850e-47
Msa0032780	Msa0298200	0.815933	7.171599e-52	-8.615850e-47
Msa0032810	Msa0298200	0.878363	2.984118e-69	-8.615850e-47
Msa0040690	Msa0298200	0.819685	1.020147e-52	-8.615850e-47
Msa0042280	Msa0298200	0.830317	3.143433e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298200	MtrunA17_Chr2g0321571	100.000	107	0	0	1	107	1	107	6.46e-75	216
Msa0298200	MtrunA17_Chr4g0035271	99.065	107	1	0	1	107	1	107	2.02e-74	215
Msa0298200	MtrunA17_Chr6g0455051	75.556	45	2	1	26	70	6	41	1.05e-16	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298200	AT2G21580.1	91.667	108	8	1	1	107	1	108	2.42e-53	162
Msa0298200	AT4G39200.1	88.889	108	11	1	1	107	1	108	9.22e-52	158
Msa0298200	AT2G21580.2	87.963	108	11	2	1	107	1	107	1.09e-51	158
Msa0298200	AT4G39200.2	87.037	108	12	2	1	107	1	107	4.24e-50	154
Msa0298200	AT4G34555.1	88.785	107	11	1	1	106	1	107	9.74e-50	153
Msa0298200	AT2G16360.1	85.714	105	14	1	2	105	2	106	3.04e-46	144

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Find 38 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAAAGGTTAACAACA+TGG	0.683005	2_3:+52124888	Msa0298200:CDS
AACATGGTCTTGTTTGATCA+AGG	0.477202	2_3:+52124904	Msa0298200:CDS
AAGAAGAAGAAATGGAGCAA+AGG	0.611863	2_3:+52124859	Msa0298200:CDS
AAGCCGGCGAAATCAGGAGG+AGG	0.614520	2_3:+52124829	Msa0298200:CDS
ACCACCACCGTCATCAAAGC+CGG	0.527384	2_3:+52124813	Msa0298200:CDS
AGACGATCAGAGAGGACTGA+AGG	0.570313	2_3:-52124976	None:intergenic
AGGAGTGATGAGTTTGTATT+TGG	0.207961	2_3:-52124956	None:intergenic
AGTCCTCTCTGATCGTCTCA+GGG	0.592148	2_3:+52124981	Msa0298200:CDS
ATACCCTGAGACGATCAGAG+AGG	0.757534	2_3:-52124984	None:intergenic
ATCAGAGATTTGATGGCAAG+AGG	0.560553	2_3:+52125114	Msa0298200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGGAAAGGAATTTGATGA+TGG	-	chr2_3:52124722-52124741	None:intergenic	30.0%
GAAAGCAAAAGAAGAAGAAA+TGG	+	chr2_3:52124851-52124870	Msa0298200:CDS	30.0%
CAAAGGTAAACAAAAGGAAA+AGG	+	chr2_3:52124876-52124895	Msa0298200:CDS	30.0%
AAAGGAAAAGGTTAACAACA+TGG	+	chr2_3:52124888-52124907	Msa0298200:CDS	30.0%
TAAGGAAAGGAATTTGATGA+TGG	-	chr2_3:52124722-52124741	None:intergenic	30.0%
GAAAGCAAAAGAAGAAGAAA+TGG	+	chr2_3:52124851-52124870	Msa0298200:CDS	30.0%
CAAAGGTAAACAAAAGGAAA+AGG	+	chr2_3:52124876-52124895	Msa0298200:CDS	30.0%
AAAGGAAAAGGTTAACAACA+TGG	+	chr2_3:52124888-52124907	Msa0298200:CDS	30.0%
CGAGATTTAGATCTAAGGAA+AGG	-	chr2_3:52124735-52124754	None:intergenic	35.0%
TGCAACGAGATTTAGATCTA+AGG	-	chr2_3:52124740-52124759	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	52124632	52125428	52124632	ID=Msa0298200;Name=Msa0298200
chr2_3	mRNA	52124632	52125428	52124632	ID=Msa0298200-mRNA-1;Parent=Msa0298200;Name=Msa0298200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=64\|1\|1\|1\|1\|1\|3\|228\|107
chr2_3	exon	52124632	52124698	52124632	ID=Msa0298200-mRNA-1:exon:16630;Parent=Msa0298200-mRNA-1
chr2_3	exon	52124796	52125002	52124796	ID=Msa0298200-mRNA-1:exon:16631;Parent=Msa0298200-mRNA-1
chr2_3	exon	52125087	52125428	52125087	ID=Msa0298200-mRNA-1:exon:16632;Parent=Msa0298200-mRNA-1
chr2_3	five_prime_UTR	52124632	52124695	52124632	ID=Msa0298200-mRNA-1:five_prime_utr;Parent=Msa0298200-mRNA-1
chr2_3	CDS	52124696	52124698	52124696	ID=Msa0298200-mRNA-1:cds;Parent=Msa0298200-mRNA-1
chr2_3	CDS	52124796	52125002	52124796	ID=Msa0298200-mRNA-1:cds;Parent=Msa0298200-mRNA-1
chr2_3	CDS	52125087	52125200	52125087	ID=Msa0298200-mRNA-1:cds;Parent=Msa0298200-mRNA-1
chr2_3	three_prime_UTR	52125201	52125428	52125201	ID=Msa0298200-mRNA-1:three_prime_utr;Parent=Msa0298200-mRNA-1

Gene Sequence	>Msa0298200 ATGGCACCGAAGAAGGCAGCACCACCACCGTCATCAAAGCCGGCGAAATCAGGAGGAGGAAAGCAAAAGAAGAAGAAATGGAGCAAAGGTAAACAAAAGGAAAAGGTTAACAACATGGTCTTGTTTGATCAAGGTACCTATGATAAGCTTCTCACTGAAGCTCCCAAATACAAACTCATCACTCCTTCAGTCCTCTCTGATCGTCTCAGGATTAATGGATCTTTGGCACGTCGTGCAATCAGAGATTTGATGGCAAGAGGATTGATTAGGTTGGTGTCTGCTCATTCTAGTCAGCAGATTTACACTAGAGCCACTAATACATAG
Protein sequence	>Msa0298200 MAPKKAAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMARGLIRLVSAHSSQQIYTRATNT*